Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000367
(1042 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013610.1| actin, gamma-enteric smooth muscle [Bos taur... 591 e-174
Alignment gi|NP_001029674.1| actin, aortic smooth muscle [Bos taurus]. 585 e-173
Alignment gi|NP_001029757.1| actin, alpha cardiac muscle 1 [Bos taurus]. 580 e-171
Alignment gi|NP_776650.1| actin, alpha skeletal muscle [Bos taurus]. 580 e-171
Alignment gi|NP_001028790.1| actin, cytoplasmic 2 [Bos taurus]. 558 e-164
Alignment gi|NP_776404.2| actin, cytoplasmic 1 [Bos taurus]. 554 e-163
Alignment gi|XP_002696363.1| PREDICTED: beta actin-like [Bos taurus]. 538 e-157
Alignment gi|XP_001249299.2| PREDICTED: beta actin [Bos taurus]. 538 e-157
Alignment gi|NP_001096808.1| beta-centractin [Bos taurus]. 322 6e-89
Alignment gi|NP_001180177.1| alpha-centractin [Bos taurus]. 320 3e-88
>ref|NP_001013610.1| actin, gamma-enteric smooth muscle [Bos taurus].
Length = 376
Score = 591 bits (1524), Expect(2) = e-174
Identities = 291/294 (98%), Positives = 292/294 (99%)
Frame = +2
Query: 110 MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM 469
SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM 120
Query: 470 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 649
TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD
Sbjct: 121 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 180
Query: 650 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 829
LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS
Sbjct: 181 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 240
Query: 830 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 294
Score = 41.6 bits (96), Expect(2) = e-174
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 292 KDLYANNVLSGGTTMYPGI 310
>ref|NP_001029674.1| actin, aortic smooth muscle [Bos taurus].
Length = 377
Score = 585 bits (1508), Expect(2) = e-173
Identities = 290/295 (98%), Positives = 292/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCEEE-TTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MCEEE +TALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCEEEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 41.6 bits (96), Expect(2) = e-173
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 293 KDLYANNVLSGGTTMYPGI 311
>ref|NP_001029757.1| actin, alpha cardiac muscle 1 [Bos taurus].
Length = 377
Score = 580 bits (1496), Expect(2) = e-171
Identities = 288/295 (97%), Positives = 291/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCE-EETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MC+ EETTALVCDNGSGL KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHH+FYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 41.6 bits (96), Expect(2) = e-171
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 293 KDLYANNVLSGGTTMYPGI 311
>ref|NP_776650.1| actin, alpha skeletal muscle [Bos taurus].
Length = 377
Score = 580 bits (1496), Expect(2) = e-171
Identities = 288/295 (97%), Positives = 291/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCEE-ETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MC+E ETTALVCDNGSGL KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHH+FYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 40.8 bits (94), Expect(2) = e-171
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNV+SGGTTMYPGI
Sbjct: 293 KDLYANNVMSGGTTMYPGI 311
>ref|NP_001028790.1| actin, cytoplasmic 2 [Bos taurus].
Length = 375
Score = 558 bits (1437), Expect(2) = e-164
Identities = 271/292 (92%), Positives = 280/292 (95%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
EEE ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDL 293
Score = 39.3 bits (90), Expect(2) = e-164
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 291 KDLYANTVLSGGTTMYPGI 309
>ref|NP_776404.2| actin, cytoplasmic 1 [Bos taurus].
Length = 375
Score = 554 bits (1428), Expect(2) = e-163
Identities = 268/292 (91%), Positives = 280/292 (95%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
+++ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDL 293
Score = 39.3 bits (90), Expect(2) = e-163
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 291 KDLYANTVLSGGTTMYPGI 309
>ref|XP_002696363.1| PREDICTED: beta actin-like [Bos taurus].
Length = 376
Score = 538 bits (1385), Expect(2) = e-157
Identities = 255/294 (86%), Positives = 277/294 (94%)
Frame = +2
Query: 110 MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
M ++E +ALV DNGSG+CKAGF GDDAPRAVFPS+VGRPRHQGVMVGMGQKD YVGDEAQ
Sbjct: 1 MSDDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQ 60
Query: 290 SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM 469
SKRGILTLKYPIEHG++TNWDDMEKIWHH+FYNELRVAP+EHP LLTEAPLNPK NREKM
Sbjct: 61 SKRGILTLKYPIEHGVVTNWDDMEKIWHHTFYNELRVAPDEHPILLTEAPLNPKINREKM 120
Query: 470 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 649
TQIMFE FN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLD
Sbjct: 121 TQIMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLD 180
Query: 650 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 829
LAGRDLTDYLMKILTERGYSF TTAEREIVRD+KEKLCYVALDFE EM + A+SSSLE+S
Sbjct: 181 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDVKEKLCYVALDFEQEMVSTAASSSLERS 240
Query: 830 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
YELPDGQVITIGNERFRCPE +FQPSF+G+ES+GIHETT+NSIMKCD+DI + L
Sbjct: 241 YELPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHETTFNSIMKCDVDIRKDL 294
Score = 37.7 bits (86), Expect(2) = e-157
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGG+TMYPGI
Sbjct: 292 KDLYANTVLSGGSTMYPGI 310
>ref|XP_001249299.2| PREDICTED: beta actin [Bos taurus].
Length = 376
Score = 538 bits (1385), Expect(2) = e-157
Identities = 255/294 (86%), Positives = 277/294 (94%)
Frame = +2
Query: 110 MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
M ++E +ALV DNGSG+CKAGF GDDAPRAVFPS+VGRPRHQGVMVGMGQKD YVGDEAQ
Sbjct: 1 MSDDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQ 60
Query: 290 SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM 469
SKRGILTLKYPIEHG++TNWDDMEKIWHH+FYNELRVAP+EHP LLTEAPLNPK NREKM
Sbjct: 61 SKRGILTLKYPIEHGVVTNWDDMEKIWHHTFYNELRVAPDEHPILLTEAPLNPKINREKM 120
Query: 470 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 649
TQIMFE FN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLD
Sbjct: 121 TQIMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLD 180
Query: 650 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 829
LAGRDLTDYLMKILTERGYSF TTAEREIVRD+KEKLCYVALDFE EM + A+SSSLE+S
Sbjct: 181 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDVKEKLCYVALDFEQEMVSTAASSSLERS 240
Query: 830 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
YELPDGQVITIGNERFRCPE +FQPSF+G+ES+GIHETT+NSIMKCD+DI + L
Sbjct: 241 YELPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHETTFNSIMKCDVDIRKDL 294
Score = 37.7 bits (86), Expect(2) = e-157
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGG+TMYPGI
Sbjct: 292 KDLYANTVLSGGSTMYPGI 310
>ref|NP_001096808.1| beta-centractin [Bos taurus].
Length = 376
Score = 322 bits (825), Expect(2) = 6e-89
Identities = 150/287 (52%), Positives = 210/287 (73%), Gaps = 1/287 (0%)
Frame = +2
Query: 134 LVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 313
+V DNGSG+ KAGFAGD P+ FP+ VGRP+H VM G + D ++G +A+ RG+L +
Sbjct: 12 VVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAEEHRGLLAI 71
Query: 314 KYPIEHGIITNWDDMEKIWHHSFY-NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 490
+YP+EHG++ +W+DME+IW + + ++L+ EEHP LLTEAPLNP NREK ++ FET
Sbjct: 72 RYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFET 131
Query: 491 FNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLT 670
FNVPA+++++QAVLSLYA+GRTTG+VLDSGDGVTH VP+YEG+A+PH+IMR+D+AGRD++
Sbjct: 132 FNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPVYEGFAMPHSIMRVDIAGRDVS 191
Query: 671 DYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQ 850
YL +L + G F T+AE E+VR IKE+ CY++++ + + A + Y LPDG
Sbjct: 192 RYLRLLLRKEGADFHTSAEFEVVRTIKERACYLSINPQKDEALETE----KVQYTLPDGS 247
Query: 851 VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
+ +G RFR PE LFQP IG ES G+HE +I K D+D+ + L
Sbjct: 248 TLNVGPARFRAPELLFQPDLIGDESEGLHEVLVFAIHKSDMDLRRTL 294
Score = 25.0 bits (53), Expect(2) = 6e-89
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPG 1037
+ L+AN +LSGG+T++ G
Sbjct: 292 RTLFANIMLSGGSTLFKG 309
>ref|NP_001180177.1| alpha-centractin [Bos taurus].
Length = 376
Score = 320 bits (819), Expect(2) = 3e-88
Identities = 150/287 (52%), Positives = 211/287 (73%), Gaps = 1/287 (0%)
Frame = +2
Query: 134 LVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 313
+V DNGSG+ KAGFAGD P+ FP+ VGRP+H VM G + D ++G +A+ RG+L++
Sbjct: 12 VVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGPKAEEHRGLLSI 71
Query: 314 KYPIEHGIITNWDDMEKIWHHSFY-NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 490
+YP+EHGI+ +W+DME+IW + + ++L+ EEHP LLTEAPLNP+ NRE+ ++ FET
Sbjct: 72 RYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKNRERAAEVFFET 131
Query: 491 FNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLT 670
FNVPA+++++QAVLSLYA+GRTTG+VLDSGDGVTH VPIYEG+A+PH+IMR+D+AGRD++
Sbjct: 132 FNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVS 191
Query: 671 DYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQ 850
+L L + GY F +++E EIV+ IKE+ CY++++ + + + Y LPDG
Sbjct: 192 RFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKA----QYYLPDGS 247
Query: 851 VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
I IG RFR PE LF+P IG ES GIHE +I K D+D+ + L
Sbjct: 248 TIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTL 294
Score = 25.0 bits (53), Expect(2) = 3e-88
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPG 1037
+ L++N VLSGG+T++ G
Sbjct: 292 RTLFSNIVLSGGSTLFKG 309
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,955,116
Number of extensions: 1215393
Number of successful extensions: 5021
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 4951
Number of HSP's successfully gapped: 60
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000367
(1042 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533002.2| PREDICTED: similar to Actin, gamma-enteric smoo... 591 e-174
Alignment gi|XP_534781.2| PREDICTED: similar to Actin, aortic smooth musc... 585 e-173
Alignment gi|XP_535424.1| PREDICTED: similar to Actin, alpha cardiac (Alp... 580 e-171
Alignment gi|NP_001182774.1| actin, cytoplasmic 1 [Canis lupus familiaris]. 552 e-162
Alignment gi|XP_533132.2| PREDICTED: hypothetical protein XP_533132 [Cani... 552 e-162
Alignment gi|XP_861856.1| PREDICTED: similar to cytoplasmic beta-actin is... 541 e-159
Alignment gi|XP_544346.1| PREDICTED: similar to Actin, cytoplasmic 1 (Bet... 538 e-157
Alignment gi|NP_001003349.1| beta-actin-like [Canis lupus familiaris]. 510 e-149
Alignment gi|XP_536888.2| PREDICTED: similar to cytoplasmic beta-actin is... 503 e-147
Alignment gi|XP_861827.1| PREDICTED: similar to cytoplasmic beta-actin is... 513 e-145
>ref|XP_533002.2| PREDICTED: similar to Actin, gamma-enteric smooth muscle (Smooth
muscle gamma actin) (Alpha-actin 3) [Canis familiaris].
Length = 376
Score = 591 bits (1524), Expect(2) = e-174
Identities = 291/294 (98%), Positives = 292/294 (99%)
Frame = +2
Query: 110 MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM 469
SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM 120
Query: 470 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 649
TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD
Sbjct: 121 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 180
Query: 650 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 829
LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS
Sbjct: 181 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 240
Query: 830 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 294
Score = 41.6 bits (96), Expect(2) = e-174
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 292 KDLYANNVLSGGTTMYPGI 310
>ref|XP_534781.2| PREDICTED: similar to Actin, aortic smooth muscle (Alpha-actin 2)
[Canis familiaris].
Length = 377
Score = 585 bits (1508), Expect(2) = e-173
Identities = 290/295 (98%), Positives = 292/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCEEE-TTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MCEEE +TALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCEEEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 41.6 bits (96), Expect(2) = e-173
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 293 KDLYANNVLSGGTTMYPGI 311
>ref|XP_535424.1| PREDICTED: similar to Actin, alpha cardiac (Alpha-cardiac actin)
isoform 3 [Canis familiaris].
Length = 377
Score = 580 bits (1496), Expect(2) = e-171
Identities = 288/295 (97%), Positives = 291/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCE-EETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MC+ EETTALVCDNGSGL KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHH+FYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 41.6 bits (96), Expect(2) = e-171
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 293 KDLYANNVLSGGTTMYPGI 311
>ref|NP_001182774.1| actin, cytoplasmic 1 [Canis lupus familiaris].
Length = 375
Score = 552 bits (1422), Expect(2) = e-162
Identities = 267/292 (91%), Positives = 279/292 (95%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
+++ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCPE LFQPSF+ MES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLSMESCGIHETTFNSIMKCDVDIRKDL 293
Score = 39.3 bits (90), Expect(2) = e-162
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 291 KDLYANTVLSGGTTMYPGI 309
>ref|XP_533132.2| PREDICTED: hypothetical protein XP_533132 [Canis familiaris].
Length = 375
Score = 552 bits (1422), Expect(2) = e-162
Identities = 268/292 (91%), Positives = 278/292 (95%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
EEE ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNW+DMEKIWHH+FYNELRVAPEEHP LLTEAPLNPK N EKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWEDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKTNGEKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDL 293
Score = 39.3 bits (90), Expect(2) = e-162
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 291 KDLYANTVLSGGTTMYPGI 309
>ref|XP_861856.1| PREDICTED: similar to cytoplasmic beta-actin isoform 9 [Canis
familiaris].
Length = 376
Score = 541 bits (1395), Expect(2) = e-159
Identities = 265/293 (90%), Positives = 277/293 (94%), Gaps = 1/293 (0%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
+++ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFI-GMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCPE LF F+ GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPEALFHFCFLPGMESCGIHETTFNSIMKCDVDIRKDL 294
Score = 39.3 bits (90), Expect(2) = e-159
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 292 KDLYANTVLSGGTTMYPGI 310
>ref|XP_544346.1| PREDICTED: similar to Actin, cytoplasmic 1 (Beta-actin 1) [Canis
familiaris].
Length = 376
Score = 538 bits (1385), Expect(2) = e-157
Identities = 254/294 (86%), Positives = 279/294 (94%)
Frame = +2
Query: 110 MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
M ++E +ALV DNGSG+CKAGF GDDAPRAVFPS+VGRPRHQGVMVGMGQKD YVGDEAQ
Sbjct: 1 MTDDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQ 60
Query: 290 SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM 469
SKRGILTLKYPIEHG++TNWDDMEKIWHH+FYNELRVAP+EHP LLTEAPLNPK NREKM
Sbjct: 61 SKRGILTLKYPIEHGVVTNWDDMEKIWHHTFYNELRVAPDEHPILLTEAPLNPKINREKM 120
Query: 470 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 649
TQIMFE FN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLD
Sbjct: 121 TQIMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLD 180
Query: 650 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 829
LAGRDLTDYLMKILTERGY+F TTAEREIVRD+KEKLCYVALDFE EM +AA+SSSLE+S
Sbjct: 181 LAGRDLTDYLMKILTERGYNFTTTAEREIVRDVKEKLCYVALDFEQEMGSAAASSSLERS 240
Query: 830 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
YELPDGQVIT+GNERFRCPE++FQPSF+G+ES+GIHETT+NSIMKCD+DI + L
Sbjct: 241 YELPDGQVITLGNERFRCPESIFQPSFLGIESSGIHETTFNSIMKCDVDIRKDL 294
Score = 36.6 bits (83), Expect(2) = e-157
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGG+TMYPGI
Sbjct: 292 KDLYANIVLSGGSTMYPGI 310
>ref|NP_001003349.1| beta-actin-like [Canis lupus familiaris].
Length = 375
Score = 510 bits (1313), Expect(2) = e-149
Identities = 251/292 (85%), Positives = 264/292 (90%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
++E ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMV MGQKDSYVGDEAQSK
Sbjct: 2 DDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVRMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEE P LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEAPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKE+ ASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEEALLRRPGLRAGDGHGASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCP+ LFQPSF+GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPKALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDL 293
Score = 39.3 bits (90), Expect(2) = e-149
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 291 KDLYANTVLSGGTTMYPGI 309
>ref|XP_536888.2| PREDICTED: similar to cytoplasmic beta-actin isoform 1 [Canis
familiaris].
Length = 361
Score = 503 bits (1294), Expect(2) = e-147
Identities = 251/292 (85%), Positives = 262/292 (89%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
+++ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQ F P GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQ-----------SSFCFLP---GMESCGIHETTFNSIMKCDVDIRKDL 279
Score = 39.3 bits (90), Expect(2) = e-147
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 277 KDLYANTVLSGGTTMYPGI 295
>ref|XP_861827.1| PREDICTED: similar to cytoplasmic beta-actin isoform 8 [Canis
familiaris].
Length = 282
Score = 513 bits (1320), Expect = e-145
Identities = 249/271 (91%), Positives = 258/271 (95%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
+++ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESA 928
LPDGQVITIGNERFRCPE LFQPSF+ A
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLAWNPA 272
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,759,135
Number of extensions: 1253037
Number of successful extensions: 4941
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 4878
Number of HSP's successfully gapped: 86
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000367
(1042 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001606.1| actin, gamma-enteric smooth muscle isoform 1 pr... 591 e-174
Alignment gi|NP_001604.1| actin, aortic smooth muscle [Homo sapiens]. 585 e-173
Alignment gi|NP_001135417.1| actin, aortic smooth muscle [Homo sapiens]. 585 e-173
Alignment gi|NP_005150.1| actin, alpha cardiac muscle 1 proprotein [Homo ... 580 e-171
Alignment gi|NP_001091.1| actin, alpha skeletal muscle [Homo sapiens]. 580 e-171
Alignment gi|NP_001186883.1| actin, cytoplasmic 2 [Homo sapiens]. 558 e-164
Alignment gi|NP_001605.1| actin, cytoplasmic 2 [Homo sapiens]. 558 e-164
Alignment gi|NP_001092.1| actin, cytoplasmic 1 [Homo sapiens]. 554 e-163
Alignment gi|NP_001017992.1| beta-actin-like protein 2 [Homo sapiens]. 530 e-155
Alignment gi|NP_001077007.1| POTE ankyrin domain family member E [Homo sa... 517 e-151
>ref|NP_001606.1| actin, gamma-enteric smooth muscle isoform 1 precursor [Homo
sapiens].
Length = 376
Score = 591 bits (1524), Expect(2) = e-174
Identities = 291/294 (98%), Positives = 292/294 (99%)
Frame = +2
Query: 110 MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM 469
SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM 120
Query: 470 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 649
TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD
Sbjct: 121 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 180
Query: 650 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 829
LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS
Sbjct: 181 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 240
Query: 830 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 294
Score = 41.6 bits (96), Expect(2) = e-174
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 292 KDLYANNVLSGGTTMYPGI 310
>ref|NP_001604.1| actin, aortic smooth muscle [Homo sapiens].
Length = 377
Score = 585 bits (1508), Expect(2) = e-173
Identities = 290/295 (98%), Positives = 292/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCEEE-TTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MCEEE +TALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCEEEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 41.6 bits (96), Expect(2) = e-173
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 293 KDLYANNVLSGGTTMYPGI 311
>ref|NP_001135417.1| actin, aortic smooth muscle [Homo sapiens].
Length = 377
Score = 585 bits (1508), Expect(2) = e-173
Identities = 290/295 (98%), Positives = 292/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCEEE-TTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MCEEE +TALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCEEEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 41.6 bits (96), Expect(2) = e-173
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 293 KDLYANNVLSGGTTMYPGI 311
>ref|NP_005150.1| actin, alpha cardiac muscle 1 proprotein [Homo sapiens].
Length = 377
Score = 580 bits (1496), Expect(2) = e-171
Identities = 288/295 (97%), Positives = 291/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCE-EETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MC+ EETTALVCDNGSGL KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHH+FYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 41.6 bits (96), Expect(2) = e-171
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 293 KDLYANNVLSGGTTMYPGI 311
>ref|NP_001091.1| actin, alpha skeletal muscle [Homo sapiens].
Length = 377
Score = 580 bits (1496), Expect(2) = e-171
Identities = 288/295 (97%), Positives = 291/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCEE-ETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MC+E ETTALVCDNGSGL KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHH+FYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 40.8 bits (94), Expect(2) = e-171
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNV+SGGTTMYPGI
Sbjct: 293 KDLYANNVMSGGTTMYPGI 311
>ref|NP_001186883.1| actin, cytoplasmic 2 [Homo sapiens].
Length = 375
Score = 558 bits (1437), Expect(2) = e-164
Identities = 271/292 (92%), Positives = 280/292 (95%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
EEE ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDL 293
Score = 39.3 bits (90), Expect(2) = e-164
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 291 KDLYANTVLSGGTTMYPGI 309
>ref|NP_001605.1| actin, cytoplasmic 2 [Homo sapiens].
Length = 375
Score = 558 bits (1437), Expect(2) = e-164
Identities = 271/292 (92%), Positives = 280/292 (95%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
EEE ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDL 293
Score = 39.3 bits (90), Expect(2) = e-164
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 291 KDLYANTVLSGGTTMYPGI 309
>ref|NP_001092.1| actin, cytoplasmic 1 [Homo sapiens].
Length = 375
Score = 554 bits (1428), Expect(2) = e-163
Identities = 268/292 (91%), Positives = 280/292 (95%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
+++ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDL 293
Score = 39.3 bits (90), Expect(2) = e-163
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 291 KDLYANTVLSGGTTMYPGI 309
>ref|NP_001017992.1| beta-actin-like protein 2 [Homo sapiens].
Length = 376
Score = 530 bits (1364), Expect(2) = e-155
Identities = 251/294 (85%), Positives = 275/294 (93%)
Frame = +2
Query: 110 MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
M + E +ALV DNGSG+CKAGF GDDAPRAVFPS++GRPRHQGVMVGMGQKD YVGDEAQ
Sbjct: 1 MTDNELSALVVDNGSGMCKAGFGGDDAPRAVFPSMIGRPRHQGVMVGMGQKDCYVGDEAQ 60
Query: 290 SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM 469
SKRG+LTLKYPIEHG++TNWDDMEKIW+H+FYNELRVAP+EHP LLTEAPLNPK NREKM
Sbjct: 61 SKRGVLTLKYPIEHGVVTNWDDMEKIWYHTFYNELRVAPDEHPILLTEAPLNPKINREKM 120
Query: 470 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 649
TQIMFE FN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLD
Sbjct: 121 TQIMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHIVPIYEGYALPHAILRLD 180
Query: 650 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 829
LAGRDLTDYLMKILTERGY+F TTAEREIVRD+KEKLCYVALDFE EM AA+SSS E+S
Sbjct: 181 LAGRDLTDYLMKILTERGYNFTTTAEREIVRDVKEKLCYVALDFEQEMVRAAASSSPERS 240
Query: 830 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
YELPDGQVITIGNERFRCPE +FQPSF+G+ES+GIHETT+NSIMKCD+DI + L
Sbjct: 241 YELPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHETTFNSIMKCDVDIRKDL 294
Score = 37.7 bits (86), Expect(2) = e-155
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGG+TMYPGI
Sbjct: 292 KDLYANTVLSGGSTMYPGI 310
>ref|NP_001077007.1| POTE ankyrin domain family member E [Homo sapiens].
Length = 1075
Score = 517 bits (1331), Expect(2) = e-151
Identities = 255/296 (86%), Positives = 270/296 (91%)
Frame = +2
Query: 104 LTMCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 283
LTM +++T LV DNGSG+CKAGFAGDDAPRAVFPSIVGRPR QG+M GM QK+SYVG E
Sbjct: 699 LTM-DDDTAVLVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRQQGMMGGMHQKESYVGKE 757
Query: 284 AQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANRE 463
AQSKRGILTLKYP+EHGIITNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANRE
Sbjct: 758 AQSKRGILTLKYPMEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 817
Query: 464 KMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMR 643
KMTQIMFETFN PAMYVAIQAV SLY SGRTTGIV+DSGDGVTH VPIYEG ALPHA +R
Sbjct: 818 KMTQIMFETFNTPAMYVAIQAVPSLYTSGRTTGIVMDSGDGVTHTVPIYEGNALPHATLR 877
Query: 644 LDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE 823
LDLAGR+L DYLMKILTERGY F T AEREIVRDIKEKLCYVALDFE EMATAASSSSLE
Sbjct: 878 LDLAGRELPDYLMKILTERGYRFTTMAEREIVRDIKEKLCYVALDFEQEMATAASSSSLE 937
Query: 824 KSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
KSYELPDGQVITIGNERFRCPE LFQP F+GMES GIHETT+NSIMK D+DI + L
Sbjct: 938 KSYELPDGQVITIGNERFRCPEALFQPCFLGMESCGIHETTFNSIMKSDVDIRKDL 993
Score = 36.6 bits (83), Expect(2) = e-151
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LY N VLSGGTTMYPG+
Sbjct: 991 KDLYTNTVLSGGTTMYPGM 1009
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,006,671
Number of extensions: 1235994
Number of successful extensions: 4984
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 4917
Number of HSP's successfully gapped: 67
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000367
(1042 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033740.2| actin, gamma-enteric smooth muscle [Mus musculu... 591 e-175
Alignment gi|NP_031418.1| actin, aortic smooth muscle [Mus musculus]. 585 e-173
Alignment gi|NP_033738.1| actin, alpha cardiac muscle 1 [Mus musculus]. 580 e-171
Alignment gi|NP_033736.1| actin, alpha skeletal muscle [Mus musculus]. 580 e-171
Alignment gi|XP_003084637.1| PREDICTED: actin, cytoplasmic 2-like [Mus mu... 558 e-164
Alignment gi|NP_033739.1| actin, cytoplasmic 2 [Mus musculus]. 558 e-164
Alignment gi|NP_031419.1| actin, cytoplasmic 1 [Mus musculus]. 554 e-163
Alignment gi|NP_780706.1| beta-actin-like protein 2 [Mus musculus]. 538 e-157
Alignment gi|XP_003086416.1| PREDICTED: actin, cytoplasmic 2-like [Mus mu... 401 e-112
Alignment gi|NP_666219.1| beta-centractin [Mus musculus]. 323 2e-89
>ref|NP_033740.2| actin, gamma-enteric smooth muscle [Mus musculus].
Length = 376
Score = 591 bits (1524), Expect(2) = e-175
Identities = 291/294 (98%), Positives = 292/294 (99%)
Frame = +2
Query: 110 MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM 469
SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM 120
Query: 470 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 649
TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD
Sbjct: 121 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 180
Query: 650 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 829
LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS
Sbjct: 181 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 240
Query: 830 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 294
Score = 41.6 bits (96), Expect(2) = e-175
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 292 KDLYANNVLSGGTTMYPGI 310
>ref|NP_031418.1| actin, aortic smooth muscle [Mus musculus].
Length = 377
Score = 585 bits (1508), Expect(2) = e-173
Identities = 290/295 (98%), Positives = 292/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCEEE-TTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MCEEE +TALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCEEEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 41.6 bits (96), Expect(2) = e-173
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 293 KDLYANNVLSGGTTMYPGI 311
>ref|NP_033738.1| actin, alpha cardiac muscle 1 [Mus musculus].
Length = 377
Score = 580 bits (1496), Expect(2) = e-171
Identities = 288/295 (97%), Positives = 291/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCE-EETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MC+ EETTALVCDNGSGL KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHH+FYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 41.6 bits (96), Expect(2) = e-171
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 293 KDLYANNVLSGGTTMYPGI 311
>ref|NP_033736.1| actin, alpha skeletal muscle [Mus musculus].
Length = 377
Score = 580 bits (1496), Expect(2) = e-171
Identities = 288/295 (97%), Positives = 291/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCEE-ETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MC+E ETTALVCDNGSGL KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHH+FYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 40.8 bits (94), Expect(2) = e-171
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNV+SGGTTMYPGI
Sbjct: 293 KDLYANNVMSGGTTMYPGI 311
>ref|XP_003084637.1| PREDICTED: actin, cytoplasmic 2-like [Mus musculus].
Length = 389
Score = 558 bits (1437), Expect(2) = e-164
Identities = 271/292 (92%), Positives = 280/292 (95%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
EEE ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDL 293
Score = 39.3 bits (90), Expect(2) = e-164
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 291 KDLYANTVLSGGTTMYPGI 309
>ref|NP_033739.1| actin, cytoplasmic 2 [Mus musculus].
Length = 375
Score = 558 bits (1437), Expect(2) = e-164
Identities = 271/292 (92%), Positives = 280/292 (95%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
EEE ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDL 293
Score = 39.3 bits (90), Expect(2) = e-164
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 291 KDLYANTVLSGGTTMYPGI 309
>ref|NP_031419.1| actin, cytoplasmic 1 [Mus musculus].
Length = 375
Score = 554 bits (1428), Expect(2) = e-163
Identities = 268/292 (91%), Positives = 280/292 (95%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
+++ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDL 293
Score = 39.3 bits (90), Expect(2) = e-163
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 291 KDLYANTVLSGGTTMYPGI 309
>ref|NP_780706.1| beta-actin-like protein 2 [Mus musculus].
Length = 376
Score = 538 bits (1386), Expect(2) = e-157
Identities = 256/294 (87%), Positives = 277/294 (94%)
Frame = +2
Query: 110 MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
M ++E TALV DNGSG+CKAGF GDDAPRAVFPS+VGRPRHQGVMVGMGQKD YVGDEAQ
Sbjct: 1 MVDDELTALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQ 60
Query: 290 SKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKM 469
SKRGILTLKYPIEHG++TNWDDMEKIW+H+FYNELRVAP+EHP LLTEAPLNPK NREKM
Sbjct: 61 SKRGILTLKYPIEHGVVTNWDDMEKIWYHTFYNELRVAPDEHPILLTEAPLNPKINREKM 120
Query: 470 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 649
TQIMFE FN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLD
Sbjct: 121 TQIMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLD 180
Query: 650 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 829
LAGRDLTDYLMKILTERGY+F TTAEREIVRD+KEKLCYVALDFE EM TAA+SSSLE+S
Sbjct: 181 LAGRDLTDYLMKILTERGYNFTTTAEREIVRDVKEKLCYVALDFEQEMVTAAASSSLERS 240
Query: 830 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
YELPDGQVITIGNERFRCPE +FQPSF+G+ES GIHETT+NSIMKCD+DI + L
Sbjct: 241 YELPDGQVITIGNERFRCPEAIFQPSFLGIESRGIHETTFNSIMKCDVDIRKDL 294
Score = 36.2 bits (82), Expect(2) = e-157
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+L+AN VLSGG+TMYPGI
Sbjct: 292 KDLFANTVLSGGSTMYPGI 310
>ref|XP_003086416.1| PREDICTED: actin, cytoplasmic 2-like [Mus musculus].
Length = 240
Score = 401 bits (1030), Expect = e-112
Identities = 201/234 (85%), Positives = 208/234 (88%)
Frame = +2
Query: 29 HTSPQSLGEGPLLPSVLQPPVHSAALTMCEEETTALVCDNGSGLCKAGFAGDDAPRAVFP 208
HT P + LL + PP S EEE ALV DNGSG+CKAGFAGDDAPRAVFP
Sbjct: 7 HTPPPAYTA--LLAAPPSPPRPSPIAM--EEEIAALVIDNGSGMCKAGFAGDDAPRAVFP 62
Query: 209 SIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYN 388
SIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHH+FYN
Sbjct: 63 SIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN 122
Query: 389 ELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIV 568
ELRVAPEEHP LLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 123 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 182
Query: 569 LDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAER 730
+DSGDGVTH VPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSF TTAER
Sbjct: 183 MDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAER 236
>ref|NP_666219.1| beta-centractin [Mus musculus].
Length = 376
Score = 323 bits (828), Expect(2) = 2e-89
Identities = 151/287 (52%), Positives = 211/287 (73%), Gaps = 1/287 (0%)
Frame = +2
Query: 134 LVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 313
+V DNGSG+ KAGFAGD P+ FP+ VGRP+H VM G + D ++G +A+ RG+LT+
Sbjct: 12 VVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAEEHRGLLTI 71
Query: 314 KYPIEHGIITNWDDMEKIWHHSFY-NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 490
+YP+EHG++ +W+DME+IW + + ++L+ EEHP LLTEAPLNP NREK ++ FET
Sbjct: 72 RYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFET 131
Query: 491 FNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLT 670
FNVPA+++++QAVLSLYA+GRTTG+VLDSGDGVTH VPIYEG+A+PH+IMR+D+AGRD++
Sbjct: 132 FNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVS 191
Query: 671 DYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQ 850
YL +L + G F T+AE E+VR IKE+ CY++++ + + A + Y LPDG
Sbjct: 192 RYLRLLLRKEGADFHTSAEFEVVRTIKERACYLSINPQKDEALETE----KVQYTLPDGS 247
Query: 851 VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
+ +G RFR PE LFQP +G ES G+HE +I K D+D+ + L
Sbjct: 248 TLDVGPARFRAPELLFQPDLVGDESEGLHEVLAFAIHKSDMDLRRTL 294
Score = 25.0 bits (53), Expect(2) = 2e-89
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPG 1037
+ L++N VLSGG+T++ G
Sbjct: 292 RTLFSNIVLSGGSTLFKG 309
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,526,955
Number of extensions: 1030279
Number of successful extensions: 4027
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 3955
Number of HSP's successfully gapped: 51
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000367
(1042 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001158122.1| actin, aortic smooth muscle [Sus scrofa]. 585 e-173
Alignment gi|NP_001163988.1| actin, alpha cardiac muscle 1 [Sus scrofa]. 580 e-171
Alignment gi|NP_001161267.1| actin, alpha skeletal muscle [Sus scrofa]. 580 e-171
Alignment gi|XP_003121682.1| PREDICTED: actin, alpha cardiac muscle 1-lik... 578 e-171
Alignment gi|XP_003357976.1| PREDICTED: actin, cytoplasmic 2 [Sus scrofa]. 558 e-164
Alignment gi|XP_003124328.1| PREDICTED: actin, cytoplasmic 1 [Sus scrofa]. 554 e-163
Alignment gi|XP_003353462.1| PREDICTED: actin, alpha cardiac muscle 1-lik... 469 e-138
Alignment gi|XP_003354819.1| PREDICTED: actin, gamma-enteric smooth muscl... 417 e-122
Alignment gi|XP_001928912.1| PREDICTED: alpha-centractin [Sus scrofa]. 320 2e-88
Alignment gi|XP_003125076.2| PREDICTED: actin, gamma-enteric smooth muscl... 281 7e-82
>ref|NP_001158122.1| actin, aortic smooth muscle [Sus scrofa].
Length = 377
Score = 585 bits (1508), Expect(2) = e-173
Identities = 290/295 (98%), Positives = 292/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCEEE-TTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MCEEE +TALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCEEEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 41.6 bits (96), Expect(2) = e-173
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 293 KDLYANNVLSGGTTMYPGI 311
>ref|NP_001163988.1| actin, alpha cardiac muscle 1 [Sus scrofa].
Length = 377
Score = 580 bits (1496), Expect(2) = e-171
Identities = 288/295 (97%), Positives = 291/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCE-EETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MC+ EETTALVCDNGSGL KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHH+FYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 41.6 bits (96), Expect(2) = e-171
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 293 KDLYANNVLSGGTTMYPGI 311
>ref|NP_001161267.1| actin, alpha skeletal muscle [Sus scrofa].
Length = 377
Score = 580 bits (1496), Expect(2) = e-171
Identities = 288/295 (97%), Positives = 291/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCEE-ETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MC+E ETTALVCDNGSGL KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHH+FYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 40.8 bits (94), Expect(2) = e-171
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNV+SGGTTMYPGI
Sbjct: 293 KDLYANNVMSGGTTMYPGI 311
>ref|XP_003121682.1| PREDICTED: actin, alpha cardiac muscle 1-like isoform 1 [Sus
scrofa].
Length = 377
Score = 578 bits (1491), Expect(2) = e-171
Identities = 287/295 (97%), Positives = 291/295 (98%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCE-EETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MC+ EETTALVCDNGSGL KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
QSKRGILTLKYPIEHGIITNWDDMEKIWHH+FYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLC+VALDFENEMATAASSSSLEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCHVALDFENEMATAASSSSLEK 240
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 295
Score = 41.6 bits (96), Expect(2) = e-171
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 293 KDLYANNVLSGGTTMYPGI 311
>ref|XP_003357976.1| PREDICTED: actin, cytoplasmic 2 [Sus scrofa].
Length = 375
Score = 558 bits (1437), Expect(2) = e-164
Identities = 271/292 (92%), Positives = 280/292 (95%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
EEE ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDL 293
Score = 39.3 bits (90), Expect(2) = e-164
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 291 KDLYANTVLSGGTTMYPGI 309
>ref|XP_003124328.1| PREDICTED: actin, cytoplasmic 1 [Sus scrofa].
Length = 375
Score = 554 bits (1428), Expect(2) = e-163
Identities = 268/292 (91%), Positives = 280/292 (95%)
Frame = +2
Query: 116 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
+++ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 475
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 476 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 655
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 656 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 835
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 836 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DI + L
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDL 293
Score = 39.3 bits (90), Expect(2) = e-163
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYAN VLSGGTTMYPGI
Sbjct: 291 KDLYANTVLSGGTTMYPGI 309
>ref|XP_003353462.1| PREDICTED: actin, alpha cardiac muscle 1-like isoform 2 [Sus
scrofa].
Length = 334
Score = 469 bits (1208), Expect(2) = e-138
Identities = 244/295 (82%), Positives = 248/295 (84%), Gaps = 1/295 (0%)
Frame = +2
Query: 110 MCE-EETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 286
MC+ EETTALVCDNGSGL KAGFAGDDAPRAVFPSIVGRPRHQ
Sbjct: 1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQ----------------- 43
Query: 287 QSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 466
IWHH+FYNELRVAPEEHPTLLTEAPLNPKANREK
Sbjct: 44 --------------------------IWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 77
Query: 467 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 646
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL
Sbjct: 78 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 137
Query: 647 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 826
DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLC+VALDFENEMATAASSSSLEK
Sbjct: 138 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCHVALDFENEMATAASSSSLEK 197
Query: 827 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 198 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDL 252
Score = 41.6 bits (96), Expect(2) = e-138
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 250 KDLYANNVLSGGTTMYPGI 268
>ref|XP_003354819.1| PREDICTED: actin, gamma-enteric smooth muscle-like [Sus scrofa].
Length = 313
Score = 417 bits (1072), Expect(2) = e-122
Identities = 207/211 (98%), Positives = 209/211 (99%)
Frame = +2
Query: 359 EKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSL 538
E+IWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSL
Sbjct: 36 EQIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSL 95
Query: 539 YASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVT 718
YASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVT
Sbjct: 96 YASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVT 155
Query: 719 TAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLF 898
TAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLF
Sbjct: 156 TAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLF 215
Query: 899 QPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
QPSFIGMESAGIHETTYNSIMKCDIDI + L
Sbjct: 216 QPSFIGMESAGIHETTYNSIMKCDIDIRKDL 246
Score = 41.6 bits (96), Expect(2) = e-122
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 244 KDLYANNVLSGGTTMYPGI 262
>ref|XP_001928912.1| PREDICTED: alpha-centractin [Sus scrofa].
Length = 376
Score = 320 bits (819), Expect(2) = 2e-88
Identities = 150/287 (52%), Positives = 211/287 (73%), Gaps = 1/287 (0%)
Frame = +2
Query: 134 LVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 313
+V DNGSG+ KAGFAGD P+ FP+ VGRP+H VM G + D ++G +A+ RG+L++
Sbjct: 12 VVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGPKAEEHRGLLSI 71
Query: 314 KYPIEHGIITNWDDMEKIWHHSFY-NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 490
+YP+EHGI+ +W+DME+IW + + ++L+ EEHP LLTEAPLNP+ NRE+ ++ FET
Sbjct: 72 RYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKNRERAAEVFFET 131
Query: 491 FNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLT 670
FNVPA+++++QAVLSLYA+GRTTG+VLDSGDGVTH VPIYEG+A+PH+IMR+D+AGRD++
Sbjct: 132 FNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVS 191
Query: 671 DYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQ 850
+L L + GY F +++E EIV+ IKE+ CY++++ + + + Y LPDG
Sbjct: 192 RFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKA----QYYLPDGS 247
Query: 851 VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIPQKL 991
I IG RFR PE LF+P IG ES GIHE +I K D+D+ + L
Sbjct: 248 TIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTL 294
Score = 25.0 bits (53), Expect(2) = 2e-88
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPG 1037
+ L++N VLSGG+T++ G
Sbjct: 292 RTLFSNIVLSGGSTLFKG 309
>ref|XP_003125076.2| PREDICTED: actin, gamma-enteric smooth muscle-like [Sus scrofa].
Length = 268
Score = 281 bits (719), Expect(2) = 7e-82
Identities = 140/143 (97%), Positives = 141/143 (98%)
Frame = +2
Query: 563 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVR 742
IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVR
Sbjct: 44 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVR 103
Query: 743 DIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGME 922
DIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGME
Sbjct: 104 DIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGME 163
Query: 923 SAGIHETTYNSIMKCDIDIPQKL 991
SAGIHETTYNSIMKCDIDI + L
Sbjct: 164 SAGIHETTYNSIMKCDIDIRKDL 186
Score = 41.6 bits (96), Expect(2) = 7e-82
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 984 KNLYANNVLSGGTTMYPGI 1040
K+LYANNVLSGGTTMYPGI
Sbjct: 184 KDLYANNVLSGGTTMYPGI 202
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,393,438
Number of extensions: 781351
Number of successful extensions: 3287
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 3245
Number of HSP's successfully gapped: 48
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000367
(1042 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 379 e-102
Sscrofa_Chr12 327 7e-87
Sscrofa_Chr01 325 3e-86
Sscrofa_Chr14 317 7e-84
Sscrofa_Chr16 283 9e-74
Sscrofa_Chr13 88 1e-14
>Sscrofa_Chr03
|| Length = 144787322
Score = 379 bits (191), Expect = e-102
Identities = 194/195 (99%)
Strand = Plus / Minus
Query: 721 agctgaacgagaaatcgtgcgagacatcaaggagaagctgtgctatgtggccctggactt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72256575 agctgaacgagaaatcgtgcgagacatcaaggagaagctgtgctatgtggccctggactt 72256516
Query: 781 tgagaacgagatggccacggcagcctcctcttcctccctggagaagagctatgagctgcc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72256515 tgagaacgagatggccacggcagcctcctcttcctccctggagaagagctatgagctgcc 72256456
Query: 841 ggacggacaggtcatcaccatcggcaatgagcgcttccgctgcccggagaccctcttcca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72256455 ggacggacaggtcatcaccatcggcaatgagcgcttccgctgcccggagaccctcttcca 72256396
Query: 901 gccttccttcatcgg 915
||| |||||||||||
Sbjct: 72256395 gccctccttcatcgg 72256381
Score = 331 bits (167), Expect = 4e-88
Identities = 371/439 (84%)
Strand = Plus / Minus
Query: 472 ccagatcatgttcgaaaccttcaatgtccctgccatgtacgttgccattcaagctgtgct 531
||||||||||||||| |||||||| ||| ||||||||||| ||||| || || |||||
Sbjct: 4730916 ccagatcatgttcgagaccttcaacaccccagccatgtacgtggccatccaggccgtgct 4730857
Query: 532 ctccctctatgcttccggccgcacaacaggcatcgtcctggattccggggatggcgtcac 591
||||| || || || |||||||| || |||||||| |||| ||||| || || |||||
Sbjct: 4730856 gtccctgtacgcctctggccgcaccactggcatcgtgatggactccggagacggggtcac 4730797
Query: 592 ccacaatgtccctatctatgagggatacgcactgccccacgccatcatgcgcctggatct 651
||||| || || ||||| ||||| ||||| ||||||||||||||| |||| ||||| ||
Sbjct: 4730796 ccacacggtgcccatctacgaggggtacgccctgccccacgccatcctgcgtctggacct 4730737
Query: 652 ggctggccgcgacctcacggactacctcatgaagatcctcacagagagaggctactcctt 711
||||||||| ||||| || |||||||||||||||||||| || ||| | |||||| |||
Sbjct: 4730736 ggctggccgggacctgaccgactacctcatgaagatcctgacggagcggggctacagctt 4730677
Query: 712 tgtgaccacagctgaacgagaaatcgtgcgagacatcaaggagaagctgtgctatgtggc 771
||||| || || || || |||||||| ||||||||||||||||||||||| || ||
Sbjct: 4730676 caccaccacggccgagcgggagatcgtgcgggacatcaaggagaagctgtgctacgtcgc 4730617
Query: 772 cctggactttgagaacgagatggccacggcagcctcctcttcctccctggagaagagcta 831
||||||||| ||| | ||||||||||| || || ||||| ||||||||||||||||||||
Sbjct: 4730616 cctggacttcgagcaggagatggccactgccgcgtcctcctcctccctggagaagagcta 4730557
Query: 832 tgagctgccggacggacaggtcatcaccatcggcaatgagcgcttccgctgcccggagac 891
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 4730556 cgagctgcccgacggccaggtcatcaccatcggcaacgagcgcttccgctgccccgaggc 4730497
Query: 892 cctcttccagccttccttc 910
||||||||||| ||||||
Sbjct: 4730496 gctcttccagccctccttc 4730478
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 559 aggcatcgtcctggattccggggatggcgtcacccacaatgtccctatctatgagggata 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72257788 aggcatcgtcctggattccggggatggcgtcacccacaatgtccctatctatgagggata 72257729
Query: 619 cgcactgccccacgccatcatgcgcctggatctggctggccgcgacctcacggactacct 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72257728 cgcactgccccacgccatcatgcgcctggatctggctggccgcgacctcacggactacct 72257669
Query: 679 catgaagatcctcacagagagaggctactcctttgtgaccacag 722
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72257668 catgaagatcctcacagagagaggctactcctttgtgaccacag 72257625
Score = 228 bits (115), Expect = 5e-57
Identities = 211/243 (86%)
Strand = Plus / Minus
Query: 233 cagggtgtaatggtgggaatgggccagaaagacagctacgtgggggatgaggctcagagc 292
||||| || |||||||| ||||||||||| ||| |||||||||||| ||||| ||||||
Sbjct: 4731602 cagggcgtgatggtgggcatgggccagaaggactcctacgtgggggacgaggcccagagc 4731543
Query: 293 aagcgagggatcctaactctcaaataccccattgaacacggcatcatcaccaactgggat 352
||| |||| ||||| || ||||| |||||||| || ||||||||| |||||||||||||
Sbjct: 4731542 aagagaggcatcctgaccctcaagtaccccatcgagcacggcatcgtcaccaactgggac 4731483
Query: 353 gacatggagaagatctggcaccactccttctacaacgagctgcgggtagcacctgaggag 412
|||||||||||||||||||||||| ||||||||||||||||||| || || || ||||||
Sbjct: 4731482 gacatggagaagatctggcaccacaccttctacaacgagctgcgtgtggcccccgaggag 4731423
Query: 413 caccccaccctgctcacggaggcccccctaaatcccaaggccaacagggagaagatgacc 472
|||||| ||||| || ||||||||||| || ||||| |||||| | ||||||||||||
Sbjct: 4731422 caccccgtgctgctgaccgaggcccccctgaaccccaaagccaaccgtgagaagatgacc 4731363
Query: 473 cag 475
|||
Sbjct: 4731362 cag 4731360
Score = 224 bits (113), Expect = 8e-56
Identities = 126/129 (97%), Gaps = 1/129 (0%)
Strand = Plus / Minus
Query: 914 ggcatggagtcagctggaattcatgaaacaacctacaattccatcatgaagtgtgacatt 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72255344 ggcatggagtcagctggaattcatgaaacaacctacaattccatcatgaagtgtgacatt 72255285
Query: 974 gacatcccccaaaaacttatacgccaacaacgtcctctctgggggtaccactatgtatcc 1033
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72255284 gacat-ccgcaaagacttatacgccaacaacgtcctctctgggggtaccactatgtatcc 72255226
Query: 1034 tggcattgc 1042
|||||||||
Sbjct: 72255225 tggcattgc 72255217
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 363 agatctggcaccactccttctacaacgagctgcgggtagcacctgaggagcaccccaccc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72310107 agatctggcaccactccttctacaacgagctgcgggtagcacctgaggagcaccccaccc 72310048
Query: 423 tgctcacggaggcccccctaaatcccaaggccaacagggagaagatgacccag 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72310047 tgctcacggaggcccccctaaatcccaaggccaacagggagaagatgacccag 72309995
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 474 agatcatgttcgaaaccttcaatgtccctgccatgtacgttgccattcaagctgtgctct 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72309801 agatcatgttcgaaaccttcaatgtccctgccatgtacgttgccattcaagctgtgctct 72309742
Query: 534 ccctctatgcttccggccgcacaacagg 561
||||||||||||||||||||||||||||
Sbjct: 72309741 ccctctatgcttccggccgcacaacagg 72309714
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 1 tatattgctctgatatttctgccaaagacacaccagccctcagtcactgggagaaggacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72322817 tatattgctctgatatttctgccaaagacacaccagccctcagtcactgggagaaggacc 72322758
Query: 61 tctcttaccctcggtg 76
||||||||||||||||
Sbjct: 72322757 tctcttaccctcggtg 72322742
Score = 75.8 bits (38), Expect = 4e-11
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 143 gacaatggctctggcctgtgcaaggctggcttcgcaggagatgacgctccccgggccgtc 202
||||| ||||| ||| |||||||||| ||||| || || || || |||||||||||||||
Sbjct: 4731824 gacaacggctccggcatgtgcaaggccggctttgcgggcgacgatgctccccgggccgtc 4731765
Query: 203 tttccttccatcgtgggtcgccctcgccaccagg 236
|| || ||||||||||| ||||| || |||||||
Sbjct: 4731764 ttcccctccatcgtggggcgcccccgacaccagg 4731731
>Sscrofa_Chr12
|| Length = 63588571
Score = 327 bits (165), Expect = 7e-87
Identities = 288/329 (87%)
Strand = Plus / Plus
Query: 143 gacaatggctctggcctgtgcaaggctggcttcgcaggagatgacgctccccgggccgtc 202
||||||||||| ||| ||||||| |||||||| || || |||||||| |||||||||||
Sbjct: 1163723 gacaatggctccggcatgtgcaaagctggctttgctggggatgacgccccccgggccgtg 1163782
Query: 203 tttccttccatcgtgggtcgccctcgccaccagggtgtaatggtgggaatgggccagaaa 262
|| || |||||||| || || || || ||||||||||| |||||||| |||||||||||
Sbjct: 1163783 ttcccgtccatcgtcgggcgtccccgacaccagggtgtcatggtgggcatgggccagaag 1163842
Query: 263 gacagctacgtgggggatgaggctcagagcaagcgagggatcctaactctcaaatacccc 322
|||||||||||||| || ||||||||||||||||| || ||||| || ||||| ||||||
Sbjct: 1163843 gacagctacgtgggcgacgaggctcagagcaagcggggcatcctgaccctcaagtacccc 1163902
Query: 323 attgaacacggcatcatcaccaactgggatgacatggagaagatctggcaccactccttc 382
|| |||||||||||| ||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct: 1163903 atcgaacacggcatcgtcaccaactgggacgacatggagaagatctggcatcacaccttc 1163962
Query: 383 tacaacgagctgcgggtagcacctgaggagcaccccaccctgctcacggaggccccccta 442
|||||||||||||| || || || |||||||||||| ||||||||||||||||||||
Sbjct: 1163963 tacaacgagctgcgcgtggcccccgaggagcaccccgtgctgctcacggaggcccccctg 1164022
Query: 443 aatcccaaggccaacagggagaagatgac 471
|| |||||||||||| | |||||||||||
Sbjct: 1164023 aaccccaaggccaaccgtgagaagatgac 1164051
Score = 317 bits (160), Expect = 7e-84
Identities = 370/440 (84%)
Strand = Plus / Plus
Query: 471 cccagatcatgttcgaaaccttcaatgtccctgccatgtacgttgccattcaagctgtgc 530
|||||||||||||||| |||||||| || ||||||||||| ||||| || || ||||
Sbjct: 1164341 cccagatcatgttcgagaccttcaacacgccggccatgtacgtggccatccaggccgtgc 1164400
Query: 531 tctccctctatgcttccggccgcacaacaggcatcgtcctggattccggggatggcgtca 590
| ||||| || || || |||||||| || ||||| ||| |||| || |||||||| ||||
Sbjct: 1164401 tgtccctgtacgcctctggccgcaccactggcattgtcatggactctggggatggggtca 1164460
Query: 591 cccacaatgtccctatctatgagggatacgcactgccccacgccatcatgcgcctggatc 650
|||||| || || ||||| ||||| ||||| ||||||||||||||| |||| ||||| |
Sbjct: 1164461 cccacacggtgcccatctacgaggggtacgccctgccccacgccatcctgcgtctggacc 1164520
Query: 651 tggctggccgcgacctcacggactacctcatgaagatcctcacagagagaggctactcct 710
|||||||||| ||||| || ||||||||||||||||||||||| ||| | |||||| ||
Sbjct: 1164521 tggctggccgggacctgaccgactacctcatgaagatcctcacggagcggggctacagct 1164580
Query: 711 ttgtgaccacagctgaacgagaaatcgtgcgagacatcaaggagaagctgtgctatgtgg 770
| ||||| || || || || |||||||| ||||||||||||||||| ||||| || |
Sbjct: 1164581 tcaccaccacggccgagcgggagatcgtgcgggacatcaaggagaagctctgctacgtcg 1164640
Query: 771 ccctggactttgagaacgagatggccacggcagcctcctcttcctccctggagaagagct 830
|||||||||| ||| | ||||||||||| || || ||||| |||||||||||||||||||
Sbjct: 1164641 ccctggacttcgagcaggagatggccaccgccgcgtcctcctcctccctggagaagagct 1164700
Query: 831 atgagctgccggacggacaggtcatcaccatcggcaatgagcgcttccgctgcccggaga 890
| |||||||| ||||| |||||||||||||||||||| ||||||||||| || || |||
Sbjct: 1164701 acgagctgcccgacggccaggtcatcaccatcggcaacgagcgcttccggtgtccagagg 1164760
Query: 891 ccctcttccagccttccttc 910
| ||||||||||| ||||||
Sbjct: 1164761 cgctcttccagccctccttc 1164780
>Sscrofa_Chr01
|| Length = 315321322
Score = 325 bits (164), Expect = 3e-86
Identities = 281/320 (87%)
Strand = Plus / Plus
Query: 242 atggtgggaatgggccagaaagacagctacgtgggggatgaggctcagagcaagcgaggg 301
|||||||| ||||| ||||| || ||||||||| || ||||| ||||||||||||||
Sbjct: 152414269 atggtgggtatgggtcagaaggattcctacgtgggtgacgaggcccagagcaagcgaggt 152414328
Query: 302 atcctaactctcaaataccccattgaacacggcatcatcaccaactgggatgacatggag 361
|| || || ||||| || |||||||| || ||||||||||||||||||||||||||||||
Sbjct: 152414329 attctgaccctcaagtatcccattgagcatggcatcatcaccaactgggatgacatggag 152414388
Query: 362 aagatctggcaccactccttctacaacgagctgcgggtagcacctgaggagcaccccacc 421
||||||||||||||| |||||||||||||||| || ||||| || ||||||||||| ||
Sbjct: 152414389 aagatctggcaccacaccttctacaacgagctccgtgtagcccccgaggagcaccctact 152414448
Query: 422 ctgctcacggaggcccccctaaatcccaaggccaacagggagaagatgacccagatcatg 481
|||||||| ||||||||||| || |||||||||||| | |||||||||||||||||||||
Sbjct: 152414449 ctgctcactgaggcccccctgaaccccaaggccaaccgcgagaagatgacccagatcatg 152414508
Query: 482 ttcgaaaccttcaatgtccctgccatgtacgttgccattcaagctgtgctctccctctat 541
|| |||||||||||||||||||||||||| || ||||| || || ||||| |||||||||
Sbjct: 152414509 tttgaaaccttcaatgtccctgccatgtatgtggccatccaggcggtgctgtccctctat 152414568
Query: 542 gcttccggccgcacaacagg 561
||||| ||||| || |||||
Sbjct: 152414569 gcttctggccgtaccacagg 152414588
Score = 176 bits (89), Expect = 2e-41
Identities = 167/193 (86%)
Strand = Plus / Plus
Query: 720 cagctgaacgagaaatcgtgcgagacatcaaggagaagctgtgctatgtggccctggact 779
||||||| || ||||| || || ||||| || ||||||||||||||||| |||||||| |
Sbjct: 152415580 cagctgagcgtgaaattgttcgtgacattaaagagaagctgtgctatgttgccctggatt 152415639
Query: 780 ttgagaacgagatggccacggcagcctcctcttcctccctggagaagagctatgagctgc 839
||||||| |||||||| || || || || || |||||| |||||||||||||||| ||||
Sbjct: 152415640 ttgagaatgagatggctacagctgcttcttcctcctccttggagaagagctatgaactgc 152415699
Query: 840 cggacggacaggtcatcaccatcggcaatgagcgcttccgctgcccggagaccctcttcc 899
| || || ||||||||||| || ||||||||||||||||||||||| ||||| |||||||
Sbjct: 152415700 ctgatggccaggtcatcactattggcaatgagcgcttccgctgccctgagacgctcttcc 152415759
Query: 900 agccttccttcat 912
|||| ||||||||
Sbjct: 152415760 agccctccttcat 152415772
Score = 127 bits (64), Expect = 1e-26
Identities = 139/164 (84%)
Strand = Plus / Plus
Query: 557 acaggcatcgtcctggattccggggatggcgtcacccacaatgtccctatctatgaggga 616
|||||||| || || || || ||||||||||| |||||||| ||||| || || |||||
Sbjct: 152415233 acaggcattgttctagactctggggatggcgtaacccacaacgtccccatttacgagggc 152415292
Query: 617 tacgcactgccccacgccatcatgcgcctggatctggctggccgcgacctcacggactac 676
|| || |||| || ||||||||||| |||||||||||||| || || ||||| ||||||
Sbjct: 152415293 tatgccttgccacatgccatcatgcgtctggatctggctggtcgggatctcactgactac 152415352
Query: 677 ctcatgaagatcctcacagagagaggctactcctttgtgaccac 720
||||||||||||||||| ||| | |||||||||||||| |||||
Sbjct: 152415353 ctcatgaagatcctcactgagcgtggctactcctttgtcaccac 152415396
Score = 99.6 bits (50), Expect = 3e-18
Identities = 101/118 (85%)
Strand = Plus / Plus
Query: 119 gaggagaccaccgcgcttgtgtgtgacaatggctctggcctgtgcaaggctggcttcgca 178
|||||||||||||| || ||||| ||||| ||||| || ||| |||||||||||||||
Sbjct: 152412984 gaggagaccaccgccctggtgtgcgacaacggctccgggctggtaaaggctggcttcgca 152413043
Query: 179 ggagatgacgctccccgggccgtctttccttccatcgtgggtcgccctcgccaccagg 236
|| || ||||||||||| || ||||| ||||||||||| || ||||| ||||||||||
Sbjct: 152413044 ggcgacgacgctccccgcgcggtcttcccttccatcgtaggccgcccgcgccaccagg 152413101
>Sscrofa_Chr14
|| Length = 153851969
Score = 317 bits (160), Expect = 7e-84
Identities = 280/320 (87%)
Strand = Plus / Plus
Query: 233 cagggtgtaatggtgggaatgggccagaaagacagctacgtgggggatgaggctcagagc 292
||||| || |||||||| ||||| |||||||| ||||||||| || ||||||||||||
Sbjct: 65237534 cagggcgtcatggtgggtatgggtcagaaagattcctacgtgggcgacgaggctcagagc 65237593
Query: 293 aagcgagggatcctaactctcaaataccccattgaacacggcatcatcaccaactgggat 352
||| |||| ||||| || ||||| |||||||| || |||||||||||||||||||||||
Sbjct: 65237594 aagagaggtatcctgaccctcaagtaccccatcgagcacggcatcatcaccaactgggac 65237653
Query: 353 gacatggagaagatctggcaccactccttctacaacgagctgcgggtagcacctgaggag 412
|||||||||||||||||||||||| |||||||||||||||| ||||| || || ||||||
Sbjct: 65237654 gacatggagaagatctggcaccacaccttctacaacgagctccgggtggcccccgaggag 65237713
Query: 413 caccccaccctgctcacggaggcccccctaaatcccaaggccaacagggagaagatgacc 472
||||||||||||||||| ||||||||||| || |||||||||||| | |||||||||||
Sbjct: 65237714 caccccaccctgctcaccgaggcccccctcaaccccaaggccaaccgcgagaagatgact 65237773
Query: 473 cagatcatgttcgaaaccttcaatgtccctgccatgtacgttgccattcaagctgtgctc 532
||||||||||| || |||||||| || || ||||||||||| ||||| || || |||||
Sbjct: 65237774 cagatcatgtttgagaccttcaacgtgcccgccatgtacgtggccatccaggcagtgctg 65237833
Query: 533 tccctctatgcttccggccg 552
|||||||| || ||||||||
Sbjct: 65237834 tccctctacgcctccggccg 65237853
Score = 254 bits (128), Expect = 8e-65
Identities = 179/196 (91%)
Strand = Plus / Plus
Query: 720 cagctgaacgagaaatcgtgcgagacatcaaggagaagctgtgctatgtggccctggact 779
||||||| || || |||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 65238240 cagctgagcgcgagatcgtgcgcgacatcaaggagaagctatgctacgtggccctggact 65238299
Query: 780 ttgagaacgagatggccacggcagcctcctcttcctccctggagaagagctatgagctgc 839
| ||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||
Sbjct: 65238300 tcgagaacgagatggccaccgccgcctcctcctcctccctggagaagagctacgagctgc 65238359
Query: 840 cggacggacaggtcatcaccatcggcaatgagcgcttccgctgcccggagaccctcttcc 899
| ||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 65238360 cagacggccaggtcatcaccatcggcaacgagcgcttccgctgcccggaaacgctcttcc 65238419
Query: 900 agccttccttcatcgg 915
|||| |||||||||||
Sbjct: 65238420 agccctccttcatcgg 65238435
Score = 224 bits (113), Expect = 8e-56
Identities = 158/173 (91%)
Strand = Plus / Minus
Query: 743 gacatcaaggagaagctgtgctatgtggccctggactttgagaacgagatggccacggca 802
|||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 109858818 gacatcaaggagaagctgtgctatgtagccctggactttgaaaatgagatggccactgcc 109858759
Query: 803 gcctcctcttcctccctggagaagagctatgagctgccggacggacaggtcatcaccatc 862
|| ||||| |||||||||||||||||||| |||||||| ||||| ||||| |||||||||
Sbjct: 109858758 gcgtcctcctcctccctggagaagagctacgagctgcctgacgggcaggtgatcaccatc 109858699
Query: 863 ggcaatgagcgcttccgctgcccggagaccctcttccagccttccttcatcgg 915
|| || |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 109858698 gggaacgagcgcttccgctgcccggagaccctgttccagccctccttcatcgg 109858646
Score = 161 bits (81), Expect = 9e-37
Identities = 144/165 (87%)
Strand = Plus / Plus
Query: 558 caggcatcgtcctggattccggggatggcgtcacccacaatgtccctatctatgagggat 617
|||||||||| || || || || || |||||||||||||| || || ||||||||||| |
Sbjct: 65237981 caggcatcgtgctcgactctggcgacggcgtcacccacaacgtgcccatctatgagggct 65238040
Query: 618 acgcactgccccacgccatcatgcgcctggatctggctggccgcgacctcacggactacc 677
|||| ||||| |||||||||||||||||||| ||||| |||||||| ||||| |||||||
Sbjct: 65238041 acgcgctgccacacgccatcatgcgcctggacctggccggccgcgatctcaccgactacc 65238100
Query: 678 tcatgaagatcctcacagagagaggctactcctttgtgaccacag 722
| |||||||||||||| ||| | ||||||||||| ||||||||||
Sbjct: 65238101 tgatgaagatcctcaccgagcgtggctactccttcgtgaccacag 65238145
Score = 133 bits (67), Expect = 2e-28
Identities = 139/163 (85%)
Strand = Plus / Minus
Query: 558 caggcatcgtcctggattccggggatggcgtcacccacaatgtccctatctatgagggat 617
||||||| || ||||| || || ||||| ||||||||||| || || || || ||||| |
Sbjct: 109860453 caggcattgtgctggactctggagatggtgtcacccacaacgtgcccatttacgagggct 109860394
Query: 618 acgcactgccccacgccatcatgcgcctggatctggctggccgcgacctcacggactacc 677
|||| |||||||||||||||||||| ||||| ||||| ||||| || ||||| |||||||
Sbjct: 109860393 acgccctgccccacgccatcatgcgtctggacctggcgggccgagatctcaccgactacc 109860334
Query: 678 tcatgaagatcctcacagagagaggctactcctttgtgaccac 720
||||||||||||| || ||| | ||||||||||| ||||||||
Sbjct: 109860333 tcatgaagatcctgacggagcgtggctactccttcgtgaccac 109860291
Score = 105 bits (53), Expect = 5e-20
Identities = 98/113 (86%)
Strand = Plus / Minus
Query: 363 agatctggcaccactccttctacaacgagctgcgggtagcacctgaggagcaccccaccc 422
|||||||||||||||| |||||||| ||||| || || || || || ||||| || ||||
Sbjct: 109863454 agatctggcaccactctttctacaatgagcttcgtgttgccccagaagagcatccgaccc 109863395
Query: 423 tgctcacggaggcccccctaaatcccaaggccaacagggagaagatgacccag 475
||||||| ||||| ||||| || |||||||||||| |||||||||||||||||
Sbjct: 109863394 tgctcaccgaggcacccctgaaccccaaggccaaccgggagaagatgacccag 109863342
Score = 101 bits (51), Expect = 7e-19
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 242 atggtgggaatgggccagaaagacagctacgtgggggatgaggctcagagcaagcgaggg 301
|||||||||||||| || ||||||||||||||||| || || || || ||||| ||||
Sbjct: 109866042 atggtgggaatgggacaaaaagacagctacgtgggtgacgaagcccaaagcaaaagagga 109865983
Query: 302 atcctaactctcaaataccccattgaacacggcatcatcaccaactgggatgacatgga 360
||||| || | || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 109865982 atcctgaccttgaagtacccaatagaacacggcatcatcaccaactgggatgacatgga 109865924
Score = 81.8 bits (41), Expect = 7e-13
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 116 gaagaggagaccaccgcgcttgtgtgtgacaatggctctggcctgtgcaaggctggcttc 175
||||| ||||||||||| |||||||| ||||||||||| |||||| || || ||||||
Sbjct: 65237311 gaagacgagaccaccgcccttgtgtgcgacaatggctccggcctggtgaaagccggcttc 65237370
Query: 176 gcaggagatgacgctccccgggccgtctttccttccatcgtgggtcgccctcgccaccag 235
|| || || ||||| || |||| || || || ||||||||||| |||||||||||||||
Sbjct: 65237371 gccggtgacgacgcccctagggctgtgttcccgtccatcgtgggccgccctcgccaccag 65237430
Query: 236 g 236
|
Sbjct: 65237431 g 65237431
>Sscrofa_Chr16
|| Length = 86898991
Score = 283 bits (143), Expect = 9e-74
Identities = 449/551 (81%)
Strand = Plus / Minus
Query: 230 caccagggtgtaatggtgggaatgggccagaaagacagctacgtgggggatgaggctcag 289
|||||||| || ||||| || ||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 38871056 caccagggcgtcatggtaggcatgggccagaaggactgctatgtgggggatgaagcccag 38870997
Query: 290 agcaagcgagggatcctaactctcaaataccccattgaacacggcatcatcaccaactgg 349
|||||| | || ||||| || || || || |||||||| || || | |||||||||||
Sbjct: 38870996 agcaagaggggcatcctgaccctgaagtatcccattgagcatggagtggtcaccaactgg 38870937
Query: 350 gatgacatggagaagatctggcaccactccttctacaacgagctgcgggtagcacctgag 409
||||||||||||||||||||||||||| | |||||||| ||||| || || ||||| ||
Sbjct: 38870936 gatgacatggagaagatctggcaccacactttctacaatgagctccgtgtggcaccagat 38870877
Query: 410 gagcaccccaccctgctcacggaggcccccctaaatcccaaggccaacagggagaagatg 469
|||||||||| ||| ||||| ||||||||||| || |||||| |||| | ||||| |||
Sbjct: 38870876 gagcaccccatcctcctcaccgaggcccccctcaaccccaagatcaaccgagagaaaatg 38870817
Query: 470 acccagatcatgttcgaaaccttcaatgtccctgccatgtacgttgccattcaagctgtg 529
|| |||||||||||||| | ||||| ||||||||||| || || || || ||||||
Sbjct: 38870816 actcagatcatgttcgaggctttcaacacacctgccatgtatgtggctatccaggctgtg 38870757
Query: 530 ctctccctctatgcttccggccgcacaacaggcatcgtcctggattccggggatggcgtc 589
| ||||||||||| || ||||| || || |||||||| ||||||| |||||||| |||
Sbjct: 38870756 ttatccctctatgcctcgggccggaccactggcatcgtgatggattctggggatggggtc 38870697
Query: 590 acccacaatgtccctatctatgagggatacgcactgccccacgccatcatgcgcctggat 649
|| |||| || || |||||||| || ||||| |||||||| |||||| | || |||||
Sbjct: 38870696 actcacacagtgcccatctatgaaggctacgccctgccccatgccatcctccgtctggac 38870637
Query: 650 ctggctggccgcgacctcacggactacctcatgaagatcctcacagagagaggctactcc 709
||||||||| | ||||| || |||||||||||||||||||| || || |||||||| |
Sbjct: 38870636 ctggctggcagagacctgactgactacctcatgaagatcctgacggaacgaggctacaac 38870577
Query: 710 tttgtgaccacagctgaacgagaaatcgtgcgagacatcaaggagaagctgtgctatgtg 769
||| |||||||| || || || || || || || |||| |||||||||||||| |||
Sbjct: 38870576 tttaccaccacagccgagcgggagattgtccgcgatgtcaaagagaagctgtgctacgtg 38870517
Query: 770 gccctggactt 780
|||||||||||
Sbjct: 38870516 gccctggactt 38870506
>Sscrofa_Chr13
|| Length = 218635234
Score = 87.7 bits (44), Expect = 1e-14
Identities = 70/78 (89%), Gaps = 3/78 (3%)
Strand = Plus / Minus
Query: 339 tcaccaactgggatgacatggagaagatctggcaccactccttctacaacgagctgcggg 398
|||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |
Sbjct: 154029056 tcaccaactgggatgacatggagaagatctggcaccacac---ctacaatgagctgcgtg 154029000
Query: 399 tagcacctgaggagcacc 416
| || |||||||||||||
Sbjct: 154028999 tggcccctgaggagcacc 154028982
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,249,215
Number of extensions: 190
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 27
Length of query: 1042
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1021
Effective length of database: 2,808,413,156
Effective search space: 2867389832276
Effective search space used: 2867389832276
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)