Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000387
(1656 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001075044.1| desmin [Bos taurus]. 494 e-139
Alignment gi|NP_776394.2| vimentin [Bos taurus]. 353 2e-97
Alignment gi|NP_001095848.1| peripherin [Bos taurus]. 332 8e-91
Alignment gi|NP_776490.2| glial fibrillary acidic protein [Bos taurus]. 323 3e-88
Alignment gi|NP_001069426.1| alpha-internexin [Bos taurus]. 240 3e-63
Alignment gi|NP_776546.1| neurofilament light polypeptide [Bos taurus]. 229 4e-60
Alignment gi|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide... 206 4e-53
Alignment gi|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [B... 206 4e-53
Alignment gi|XP_001252037.1| PREDICTED: neurofilament triplet M protein [... 206 4e-53
Alignment gi|XP_002694652.1| PREDICTED: neurofilament, heavy polypeptide ... 188 1e-47
>ref|NP_001075044.1| desmin [Bos taurus].
Length = 470
Score = 494 bits (1271), Expect = e-139
Identities = 259/279 (92%), Positives = 260/279 (93%)
Frame = +2
Query: 80 ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
A+LQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVH
Sbjct: 192 AKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQ 251
Query: 260 XXXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN
Sbjct: 252 AQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 311
Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE
Sbjct: 312 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 371
Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET
Sbjct: 372 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 431
Query: 800 SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL
Sbjct: 432 SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 470
>ref|NP_776394.2| vimentin [Bos taurus].
Length = 466
Score = 353 bits (907), Expect = 2e-97
Identities = 177/279 (63%), Positives = 226/279 (81%), Gaps = 1/279 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQEE+ +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H
Sbjct: 188 KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248 QIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
ALRQAKQE EYR Q+Q+ TCE+DALKGTN+SL RQMRE+E+ F+ EA+ YQD I RL++
Sbjct: 308 ALRQAKQESNEYRRQVQTLTCEVDALKGTNESLERQMREMEENFSVEAANYQDTIGRLQD 367
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI+LP+ FS+LN RET+
Sbjct: 368 EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETN 427
Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
+ + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 428 LDSLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 465
>ref|NP_001095848.1| peripherin [Bos taurus].
Length = 469
Score = 332 bits (850), Expect = 8e-91
Identities = 173/282 (61%), Positives = 222/282 (78%), Gaps = 4/282 (1%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
RL+EE + +E+AE+NL FR DVD ATL+R++LER+IESL +EI FLKK+H
Sbjct: 181 RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQL 240
Query: 263 XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
+ KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK +DL+ AAN+N
Sbjct: 241 SVESQQVQHVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRN 300
Query: 437 NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ ARL
Sbjct: 301 HEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARL 360
Query: 617 EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ +
Sbjct: 361 EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSIKT 420
Query: 797 TSPE-QRGSEVHTKKTVMIKTIETRDGE-VVSEATQQQHEVL 916
T PE + E H++K V+I+TIETRDGE VV+E+ ++QH L
Sbjct: 421 TVPEVEPPQETHSRKMVLIRTIETRDGEQVVTESQKEQHSEL 462
>ref|NP_776490.2| glial fibrillary acidic protein [Bos taurus].
Length = 428
Score = 323 bits (828), Expect = 3e-88
Identities = 161/279 (57%), Positives = 212/279 (75%), Gaps = 1/279 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQ+E + EAENNLAA+R + D ATLAR+DLER+IESL EEI FL+K+H
Sbjct: 150 KLQDETNQRLEAENNLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQE 209
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
MD++KPDLTAALR+IR QYE +A+ N+ EAEEWY+SK +DL AA +N +
Sbjct: 210 QLAQQQVHVEMDVAKPDLTAALREIRTQYEAVASSNMHEAEEWYRSKFADLNDAAARNAE 269
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
LRQAK E +YR Q+Q+ TC++++L+GTN+SL RQMRE E+R A EA+ YQ+ +ARLEE
Sbjct: 270 LLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHAREAASYQEALARLEE 329
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
E + LKDEMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L RETS
Sbjct: 330 EGQSLKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 389
Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
+ + SE H K+ +++KT+E RDGEV+ E+ Q+ +V+
Sbjct: 390 LDTKSVSEGHLKRNIVVKTVEMRDGEVIKESKQEHKDVM 428
>ref|NP_001069426.1| alpha-internexin [Bos taurus].
Length = 499
Score = 240 bits (612), Expect = 3e-63
Identities = 123/239 (51%), Positives = 174/239 (72%), Gaps = 3/239 (1%)
Frame = +2
Query: 80 ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
AR +EE + +E AE L A + DVD ATLAR+DLE+++ESL +E+AF+++VH
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239
Query: 260 XXXXXXXXXXX---MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAAN 430
+ ++KPDL++ALR+IRAQYE++AAKN+ AEEWYKSK ++L + A
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLSSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299
Query: 431 KNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIA 610
++ +A+R +++E+ EYR Q+Q+ T EI+ L+G N+SL RQ+ ELE+R ++E + YQDNI
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVASYQDNIG 359
Query: 611 RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALN 787
+LE ++R+ K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R + + S LN
Sbjct: 360 QLENDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLN 418
>ref|NP_776546.1| neurofilament light polypeptide [Bos taurus].
Length = 555
Score = 229 bits (585), Expect = 4e-60
Identities = 133/301 (44%), Positives = 182/301 (60%), Gaps = 24/301 (7%)
Frame = +2
Query: 80 ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
AR +EE+ +E+AE L R D A LAR +LE+RI+SL +EIAFLKKVH
Sbjct: 176 ARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEIAFLKKVHEEEIAELQ 235
Query: 260 XXXXXXXXXXXMDMS-KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
MD+S KPDL+AAL+DIRAQYE +AAKN+ AEEW+KS+ + LT++A KN
Sbjct: 236 AQIQYAQISVEMDVSSKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKN 295
Query: 437 NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
DA+R AK E+ E R +++ T EI+A +G N++L +Q++ELED+ ++ S QD I +L
Sbjct: 296 TDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKL 355
Query: 617 EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP----------- 763
E E+R K EMAR+L+EYQDLLNVKMALD+EIA YRKLLEGEE+R++
Sbjct: 356 ENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLSFTSVGSLTTGYTQ 415
Query: 764 ------------IQTFSALNFRETSPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQH 907
+QT S L + P S V ++ + +TIE E + +
Sbjct: 416 SSQVFGRSAYGGLQTSSYLMSARSFPSYYTSHVQEEQIEVEETIEAAKAEEAKDEPPSEG 475
Query: 908 E 910
E
Sbjct: 476 E 476
>ref|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
Length = 931
Score = 206 bits (525), Expect = 4e-53
Identities = 100/226 (44%), Positives = 158/226 (69%), Gaps = 1/226 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
R +EE +L+++ E + A R D++ ++L +++L+++++SL +E+AFL+ H
Sbjct: 188 RFEEEARLRDDTEAAIRALRKDIEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLA 247
Query: 263 XXXXXXXXXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
D K D++ AL++IR+Q E+ + +N+ +AEEW+K + + LT+AA +N
Sbjct: 248 QIQASHITVERKDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNK 307
Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
+A+R AK+E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R + S YQD I +LE
Sbjct: 308 EAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLE 367
Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 757
E+R K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +
Sbjct: 368 NELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFS 413
>ref|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
Length = 931
Score = 206 bits (525), Expect = 4e-53
Identities = 100/226 (44%), Positives = 158/226 (69%), Gaps = 1/226 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
R +EE +L+++ E + A R D++ ++L +++L+++++SL +E+AFL+ H
Sbjct: 188 RFEEEARLRDDTEAAIRALRKDIEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLA 247
Query: 263 XXXXXXXXXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
D K D++ AL++IR+Q E+ + +N+ +AEEW+K + + LT+AA +N
Sbjct: 248 QIQASHITVERKDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNK 307
Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
+A+R AK+E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R + S YQD I +LE
Sbjct: 308 EAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLE 367
Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 757
E+R K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +
Sbjct: 368 NELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFS 413
>ref|XP_001252037.1| PREDICTED: neurofilament triplet M protein [Bos taurus].
Length = 931
Score = 206 bits (525), Expect = 4e-53
Identities = 100/226 (44%), Positives = 158/226 (69%), Gaps = 1/226 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
R +EE +L+++ E + A R D++ ++L +++L+++++SL +E+AFL+ H
Sbjct: 188 RFEEEARLRDDTEAAIRALRKDIEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLA 247
Query: 263 XXXXXXXXXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
D K D++ AL++IR+Q E+ + +N+ +AEEW+K + + LT+AA +N
Sbjct: 248 QIQASHITVERKDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNK 307
Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
+A+R AK+E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R + S YQD I +LE
Sbjct: 308 EAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLE 367
Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 757
E+R K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +
Sbjct: 368 NELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFS 413
>ref|XP_002694652.1| PREDICTED: neurofilament, heavy polypeptide 200kDa-like isoform 2
[Bos taurus].
Length = 1023
Score = 188 bits (477), Expect = 1e-47
Identities = 110/291 (37%), Positives = 167/291 (57%), Gaps = 15/291 (5%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
RL +E + +EEAE A A AR++L+++ ++L EE +L++ H
Sbjct: 179 RLDDEARQREEAEAATRALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLG 238
Query: 263 XXXXXXXXXXM----DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAAN 430
D K D+T+ALR+IRAQ E ++ ++EEW++ ++ L++AA
Sbjct: 239 QIQSSSAAQTQAEARDALKCDVTSALREIRAQLEGHTVQSTLQSEEWFRVRLDRLSEAAK 298
Query: 431 KNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIA 610
N DA+R A++E+ EYR Q+Q+ T E++ LK T DSL RQ ELEDR ++ + YQ+ I
Sbjct: 299 VNTDAMRSAQEEISEYRRQLQARTTELETLKSTKDSLERQRSELEDRHQADIASYQEAIQ 358
Query: 611 RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRI-----------N 757
+L+ E+R+ K EMA LREYQDLLNVKMALD+EIA YRKLLEGEE RI
Sbjct: 359 QLDAELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPSPFLLPEG 418
Query: 758 LPIQTFSALNFRETSPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHE 910
LP + + + S E+ ++K +I +T + +V E T+++ +
Sbjct: 419 LPKIPSVSTHIKVKSEEKIKMVEKSEKETVIVEEQTEEVQVTEEVTEEEEK 469
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,760,837
Number of extensions: 1733235
Number of successful extensions: 8771
Number of sequences better than 1.0e-05: 115
Number of HSP's gapped: 8578
Number of HSP's successfully gapped: 116
Length of query: 552
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 445
Effective length of database: 14,140,958
Effective search space: 6292726310
Effective search space used: 6292726310
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000387
(1656 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012394.1| desmin [Canis lupus familiaris]. 492 e-139
Alignment gi|XP_856478.1| PREDICTED: similar to vimentin isoform 12 [Cani... 355 9e-98
Alignment gi|XP_535175.2| PREDICTED: similar to vimentin isoform 1 [Canis... 355 9e-98
Alignment gi|XP_856433.1| PREDICTED: similar to vimentin isoform 11 [Cani... 350 2e-96
Alignment gi|XP_856390.1| PREDICTED: similar to vimentin isoform 10 [Cani... 350 2e-96
Alignment gi|XP_534812.2| PREDICTED: similar to peripherin isoform 1 [Can... 330 2e-90
Alignment gi|XP_848378.1| PREDICTED: similar to Glial fibrillary acidic p... 325 1e-88
Alignment gi|XP_861904.1| PREDICTED: similar to peripherin isoform 3 [Can... 323 4e-88
Alignment gi|XP_856348.1| PREDICTED: similar to vimentin isoform 9 [Canis... 323 4e-88
Alignment gi|XP_856267.1| PREDICTED: similar to vimentin isoform 7 [Canis... 322 9e-88
>ref|NP_001012394.1| desmin [Canis lupus familiaris].
Length = 469
Score = 492 bits (1266), Expect = e-139
Identities = 257/279 (92%), Positives = 260/279 (93%)
Frame = +2
Query: 80 ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
A+LQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVH
Sbjct: 191 AKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQ 250
Query: 260 XXXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN
Sbjct: 251 AQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 310
Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRE+EDRFASEASGYQDNIARLE
Sbjct: 311 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMREMEDRFASEASGYQDNIARLE 370
Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQT+SALNFRET
Sbjct: 371 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTYSALNFRET 430
Query: 800 SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL
Sbjct: 431 SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 469
>ref|XP_856478.1| PREDICTED: similar to vimentin isoform 12 [Canis familiaris].
Length = 466
Score = 355 bits (910), Expect = 9e-98
Identities = 179/279 (64%), Positives = 225/279 (80%), Gaps = 1/279 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQEE+ +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H
Sbjct: 188 KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248 QIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
ALRQAKQE EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308 ALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 367
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI LP+ FS+LN RET+
Sbjct: 368 EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETN 427
Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
+ + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 428 LDSLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 465
>ref|XP_535175.2| PREDICTED: similar to vimentin isoform 1 [Canis familiaris].
Length = 466
Score = 355 bits (910), Expect = 9e-98
Identities = 179/279 (64%), Positives = 225/279 (80%), Gaps = 1/279 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQEE+ +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H
Sbjct: 188 KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248 QIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
ALRQAKQE EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308 ALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 367
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI LP+ FS+LN RET+
Sbjct: 368 EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETN 427
Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
+ + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 428 LDSLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 465
>ref|XP_856433.1| PREDICTED: similar to vimentin isoform 11 [Canis familiaris].
Length = 460
Score = 350 bits (899), Expect = 2e-96
Identities = 179/279 (64%), Positives = 225/279 (80%), Gaps = 1/279 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQEE+ +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H
Sbjct: 188 KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEAQIQDQH 247
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248 VQID------MDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 301
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
ALRQAKQE EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 302 ALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 361
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI LP+ FS+LN RET+
Sbjct: 362 EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETN 421
Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
+ + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 422 LDSLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 459
>ref|XP_856390.1| PREDICTED: similar to vimentin isoform 10 [Canis familiaris].
Length = 465
Score = 350 bits (899), Expect = 2e-96
Identities = 177/276 (64%), Positives = 222/276 (80%), Gaps = 1/276 (0%)
Frame = +2
Query: 92 EEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXX 271
EE+ +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H
Sbjct: 190 EEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQ 249
Query: 272 XXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALR 451
MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALR
Sbjct: 250 DQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALR 309
Query: 452 QAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIR 631
QAKQE EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++EI+
Sbjct: 310 QAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQ 369
Query: 632 HLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQ 811
++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI LP+ FS+LN RET+ +
Sbjct: 370 NMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDS 429
Query: 812 RG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
+ H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 430 LPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 464
>ref|XP_534812.2| PREDICTED: similar to peripherin isoform 1 [Canis familiaris].
Length = 469
Score = 330 bits (846), Expect = 2e-90
Identities = 171/281 (60%), Positives = 220/281 (78%), Gaps = 3/281 (1%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
RL+EE + +E+AE+NL FR DVD ATL+R++LER+IESL +EI FLKK+H
Sbjct: 181 RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQV 240
Query: 263 XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
+ KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK DL+ AAN+N
Sbjct: 241 SVESQQVQQVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYGDLSDAANRN 300
Query: 437 NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ ARL
Sbjct: 301 HEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARL 360
Query: 617 EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ +
Sbjct: 361 EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSMKT 420
Query: 797 TSPE-QRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
+ PE + + H++K V+IKTIETRDGEVV+E+ ++Q L
Sbjct: 421 SVPEVEPPQDSHSRKMVLIKTIETRDGEVVTESQKEQRSDL 461
>ref|XP_848378.1| PREDICTED: similar to Glial fibrillary acidic protein, astrocyte
(GFAP) isoform 2 [Canis familiaris].
Length = 433
Score = 325 bits (832), Expect = 1e-88
Identities = 161/279 (57%), Positives = 214/279 (76%), Gaps = 1/279 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+ Q+E L+ EAENNLA++R + D ATLAR+DLER+IESL EEI FL+K+H
Sbjct: 155 KFQDETNLRLEAENNLASYRQEADEATLARLDLERKIESLEEEIRFLRKIHDEEVQELQE 214
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
+D++KPDLTAALR+IR QYE +A+ N+ EAEEWY+SK +DLT AA +N +
Sbjct: 215 QLARQQVHVELDVAKPDLTAALREIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAE 274
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
LRQAK E +YR Q+Q+ TC++++L+GTN+SL RQMRE E+R A EA+ YQ+ +ARLEE
Sbjct: 275 LLRQAKHEANDYRRQLQTLTCDLESLRGTNESLERQMREQEERHAREAASYQEALARLEE 334
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
E ++LKDEMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L RETS
Sbjct: 335 EGQNLKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 394
Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
+ + SE H K+ +++KT+E RDGEV+ E+ Q+ EV+
Sbjct: 395 LDTKSVSEGHLKRNIVVKTVEMRDGEVIKESKQEHKEVM 433
>ref|XP_861904.1| PREDICTED: similar to peripherin isoform 3 [Canis familiaris].
Length = 453
Score = 323 bits (827), Expect = 4e-88
Identities = 167/269 (62%), Positives = 212/269 (78%), Gaps = 3/269 (1%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
RL+EE + +E+AE+NL FR DVD ATL+R++LER+IESL +EI FLKK+H
Sbjct: 181 RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQV 240
Query: 263 XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
+ KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK DL+ AAN+N
Sbjct: 241 SVESQQVQQVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYGDLSDAANRN 300
Query: 437 NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ ARL
Sbjct: 301 HEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARL 360
Query: 617 EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ +
Sbjct: 361 EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSMKT 420
Query: 797 TSPE-QRGSEVHTKKTVMIKTIETRDGEV 880
+ PE + + H++K V+IKTIETRDGEV
Sbjct: 421 SVPEVEPPQDSHSRKMVLIKTIETRDGEV 449
>ref|XP_856348.1| PREDICTED: similar to vimentin isoform 9 [Canis familiaris].
Length = 458
Score = 323 bits (827), Expect = 4e-88
Identities = 169/279 (60%), Positives = 214/279 (76%), Gaps = 1/279 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQEE+ +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H
Sbjct: 188 KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248 QIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
ALRQAKQE EYR Q S+ N+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308 ALRQAKQESNEYRRQPFSFL--------QNESLERQMREMEENFAVEAANYQDTIGRLQD 359
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI LP+ FS+LN RET+
Sbjct: 360 EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETN 419
Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
+ + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 420 LDSLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 457
>ref|XP_856267.1| PREDICTED: similar to vimentin isoform 7 [Canis familiaris].
Length = 433
Score = 322 bits (824), Expect = 9e-88
Identities = 160/237 (67%), Positives = 194/237 (81%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQEE+ +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H
Sbjct: 188 KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248 QIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
ALRQAKQE EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308 ALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 367
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR 793
EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI LP+ FS+LN R
Sbjct: 368 EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLR 424
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,638,742
Number of extensions: 1798506
Number of successful extensions: 9663
Number of sequences better than 1.0e-05: 118
Number of HSP's gapped: 9355
Number of HSP's successfully gapped: 126
Length of query: 552
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 444
Effective length of database: 15,274,216
Effective search space: 6781751904
Effective search space used: 6781751904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000387
(1656 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001918.3| desmin [Homo sapiens]. 493 e-139
Alignment gi|NP_003371.2| vimentin [Homo sapiens]. 357 2e-98
Alignment gi|NP_006253.2| peripherin [Homo sapiens]. 335 1e-91
Alignment gi|NP_002046.1| glial fibrillary acidic protein isoform 1 [Homo... 324 2e-88
Alignment gi|NP_001124491.1| glial fibrillary acidic protein isoform 2 [H... 289 6e-78
Alignment gi|NP_001229305.1| glial fibrillary acidic protein isoform 3 [H... 288 1e-77
Alignment gi|NP_116116.1| alpha-internexin [Homo sapiens]. 242 6e-64
Alignment gi|NP_006149.2| neurofilament light polypeptide [Homo sapiens]. 232 9e-61
Alignment gi|NP_005373.2| neurofilament medium polypeptide isoform 1 [Hom... 208 1e-53
Alignment gi|NP_066554.2| neurofilament heavy polypeptide [Homo sapiens]. 193 3e-49
>ref|NP_001918.3| desmin [Homo sapiens].
Length = 470
Score = 493 bits (1268), Expect = e-139
Identities = 258/279 (92%), Positives = 260/279 (93%)
Frame = +2
Query: 80 ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
A+LQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVH
Sbjct: 192 AKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQ 251
Query: 260 XXXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN
Sbjct: 252 AQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 311
Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE
Sbjct: 312 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 371
Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQT+SALNFRET
Sbjct: 372 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTYSALNFRET 431
Query: 800 SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL
Sbjct: 432 SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 470
>ref|NP_003371.2| vimentin [Homo sapiens].
Length = 466
Score = 357 bits (915), Expect = 2e-98
Identities = 179/279 (64%), Positives = 226/279 (81%), Gaps = 1/279 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQEE+ +EEAEN L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H
Sbjct: 188 KLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQA 247
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
+D+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248 QIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
ALRQAKQE EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308 ALRQAKQESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 367
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI+LP+ FS+LN RET+
Sbjct: 368 EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETN 427
Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
+ + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 428 LDSLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 465
>ref|NP_006253.2| peripherin [Homo sapiens].
Length = 470
Score = 335 bits (858), Expect = 1e-91
Identities = 173/281 (61%), Positives = 222/281 (79%), Gaps = 3/281 (1%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
RL+EE + +E+AE+NL FR DVD ATL+R++LER+IESL +EI FLKK+H
Sbjct: 182 RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQV 241
Query: 263 XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
+ KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK +DL+ AAN+N
Sbjct: 242 SVESQQVQQVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRN 301
Query: 437 NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ ARL
Sbjct: 302 HEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARL 361
Query: 617 EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++LN +
Sbjct: 362 EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLNIKT 421
Query: 797 TSPE-QRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
T PE + + H++KTV+IKTIETR+GEVV+E+ ++Q L
Sbjct: 422 TVPEVEPPQDSHSRKTVLIKTIETRNGEVVTESQKEQRSEL 462
>ref|NP_002046.1| glial fibrillary acidic protein isoform 1 [Homo sapiens].
Length = 432
Score = 324 bits (830), Expect = 2e-88
Identities = 161/279 (57%), Positives = 213/279 (76%), Gaps = 1/279 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQ+E L+ EAENNLAA+R + D ATLAR+DLER+IESL EEI FL+K+H
Sbjct: 154 KLQDETNLRLEAENNLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQE 213
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
+D++KPDLTAAL++IR QYE +A+ N+ EAEEWY+SK +DLT AA +N +
Sbjct: 214 QLARQQVHVELDVAKPDLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAE 273
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
LRQAK E +YR Q+QS TC++++L+GTN+SL RQMRE E+R EA+ YQ+ +ARLEE
Sbjct: 274 LLRQAKHEANDYRRQLQSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALARLEE 333
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
E + LKDEMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L RETS
Sbjct: 334 EGQSLKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 393
Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
+ + SE H K+ +++KT+E RDGEV+ E+ Q+ +V+
Sbjct: 394 LDTKSVSEGHLKRNIVVKTVEMRDGEVIKESKQEHKDVM 432
>ref|NP_001124491.1| glial fibrillary acidic protein isoform 2 [Homo sapiens].
Length = 431
Score = 289 bits (739), Expect = 6e-78
Identities = 148/271 (54%), Positives = 196/271 (72%), Gaps = 3/271 (1%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQ+E L+ EAENNLAA+R + D ATLAR+DLER+IESL EEI FL+K+H
Sbjct: 154 KLQDETNLRLEAENNLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQE 213
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
+D++KPDLTAAL++IR QYE +A+ N+ EAEEWY+SK +DLT AA +N +
Sbjct: 214 QLARQQVHVELDVAKPDLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAE 273
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
LRQAK E +YR Q+QS TC++++L+GTN+SL RQMRE E+R EA+ YQ+ +ARLEE
Sbjct: 274 LLRQAKHEANDYRRQLQSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALARLEE 333
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR--- 793
E + LKDEMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L R
Sbjct: 334 EGQSLKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRGGK 393
Query: 794 ETSPEQRGSEVHTKKTVMIKTIETRDGEVVS 886
T + K++ I+ I + ++V+
Sbjct: 394 STKDGENHKVTRYLKSLTIRVIPIQAHQIVN 424
>ref|NP_001229305.1| glial fibrillary acidic protein isoform 3 [Homo sapiens].
Length = 438
Score = 288 bits (736), Expect = 1e-77
Identities = 143/237 (60%), Positives = 183/237 (77%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQ+E L+ EAENNLAA+R + D ATLAR+DLER+IESL EEI FL+K+H
Sbjct: 154 KLQDETNLRLEAENNLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQE 213
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
+D++KPDLTAAL++IR QYE +A+ N+ EAEEWY+SK +DLT AA +N +
Sbjct: 214 QLARQQVHVELDVAKPDLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAE 273
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
LRQAK E +YR Q+QS TC++++L+GTN+SL RQMRE E+R EA+ YQ+ +ARLEE
Sbjct: 274 LLRQAKHEANDYRRQLQSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALARLEE 333
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR 793
E + LKDEMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L R
Sbjct: 334 EGQSLKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIR 390
>ref|NP_116116.1| alpha-internexin [Homo sapiens].
Length = 499
Score = 242 bits (618), Expect = 6e-64
Identities = 124/239 (51%), Positives = 175/239 (73%), Gaps = 3/239 (1%)
Frame = +2
Query: 80 ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
AR +EE + +E AE L A + DVD ATLAR+DLE+++ESL +E+AF+++VH
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239
Query: 260 XXXXXXXXXXX---MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAAN 430
+ ++KPDLT+ALR+IRAQYE++AAKN+ AEEWYKSK ++L + A
Sbjct: 240 ATLQASSQAAAEVDVTVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299
Query: 431 KNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIA 610
++ +A+R +++E+ EYR Q+Q+ T EI+ L+G N+SL RQ+ ELE+R ++E +GYQD+I
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVAGYQDSIG 359
Query: 611 RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALN 787
+LE ++R+ K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R + + S LN
Sbjct: 360 QLENDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLN 418
>ref|NP_006149.2| neurofilament light polypeptide [Homo sapiens].
Length = 543
Score = 232 bits (591), Expect = 9e-61
Identities = 131/300 (43%), Positives = 182/300 (60%), Gaps = 23/300 (7%)
Frame = +2
Query: 80 ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
AR +EE+ +E+AE L R D A LAR +LE+RI+SL +EI+FLKKVH
Sbjct: 176 ARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEISFLKKVHEEEIAELQ 235
Query: 260 XXXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
MD++KPDL+AAL+DIRAQYE +AAKN+ AEEW+KS+ + LT++A KN
Sbjct: 236 AQIQYAQISVEMDVTKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKNT 295
Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
DA+R AK E+ E R +++ T EI+A +G N++L +Q++ELED+ ++ S QD I +LE
Sbjct: 296 DAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKLE 355
Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP------------ 763
E+R K EMAR+L+EYQDLLNVKMALD+EIA YRKLLEGEE+R++
Sbjct: 356 NELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLSFTSVGSITSGYSQS 415
Query: 764 -----------IQTFSALNFRETSPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHE 910
+QT S L + P S V ++ + +TIE E + + E
Sbjct: 416 SQVFGRSAYGGLQTSSYLMSTRSFPSYYTSHVQEEQIEVEETIEAAKAEEAKDEPPSEGE 475
>ref|NP_005373.2| neurofilament medium polypeptide isoform 1 [Homo sapiens].
Length = 916
Score = 208 bits (530), Expect = 1e-53
Identities = 109/278 (39%), Positives = 177/278 (63%), Gaps = 2/278 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
R +EE +L+++ E + A R D++ A+L +++L+++++SL +E+AFL+ H
Sbjct: 188 RFEEEARLRDDTEAAIRALRKDIEEASLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLA 247
Query: 263 XXXXXXXXXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
D K D++ AL++IR+Q E+ + +N+ +AEEW+K + + LT+AA +N
Sbjct: 248 QIQASHITVERKDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNK 307
Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
+A+R AK+E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R + S YQD I +LE
Sbjct: 308 EAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLE 367
Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
E+R K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R + + + +
Sbjct: 368 NELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTFAGSITGPLYTHR 427
Query: 800 SPEQRGSEVHTKKTVMIK-TIETRDGEVVSEATQQQHE 910
P S++ K K ++ + E + E T+ + E
Sbjct: 428 PPITISSKIQKPKVEAPKLKVQHKFVEEIIEETKVEDE 465
>ref|NP_066554.2| neurofilament heavy polypeptide [Homo sapiens].
Length = 1020
Score = 193 bits (491), Expect = 3e-49
Identities = 117/288 (40%), Positives = 164/288 (56%), Gaps = 11/288 (3%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
RL +E + +EEAE A A AR+DL+++ ++L EE +L++ H
Sbjct: 184 RLDDEARQREEAEAAARALARFAQEAEAARVDLQKKAQALQEECGYLRRHHQEEVGELLG 243
Query: 263 XXXXXXXXXXM------DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQA 424
D K D+T+ALR+IRAQ E A ++ ++EEW++ ++ L++A
Sbjct: 244 QIQGSGAAQAQMQAETRDALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVRLDRLSEA 303
Query: 425 ANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDN 604
A N DA+R A++E+ EYR Q+Q+ T E++ALK T DSL RQ ELEDR ++ + YQ+
Sbjct: 304 AKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKDSLERQRSELEDRHQADIASYQEA 363
Query: 605 IARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSAL 784
I +L+ E+R+ K EMA LREYQDLLNVKMALD+EIA YRKLLEGEE RI FS
Sbjct: 364 IQQLDAELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPIPFSLP 423
Query: 785 NFRETSPEQRGSEVHTKKTVMIKTIETRDGEVV-----SEATQQQHEV 913
P + + K IK +E + E V +E TQ EV
Sbjct: 424 EGLPKIPSV-STHIKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEV 470
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,122,714
Number of extensions: 1739889
Number of successful extensions: 8953
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 8779
Number of HSP's successfully gapped: 90
Length of query: 552
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 444
Effective length of database: 14,737,052
Effective search space: 6543251088
Effective search space used: 6543251088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000387
(1656 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034173.1| desmin [Mus musculus]. 491 e-139
Alignment gi|NP_035831.2| vimentin [Mus musculus]. 357 1e-98
Alignment gi|NP_001157061.1| peripherin isoform 3 [Mus musculus]. 328 1e-89
Alignment gi|NP_034407.2| glial fibrillary acidic protein isoform 2 [Mus ... 320 2e-87
Alignment gi|NP_001157060.1| peripherin isoform 2 [Mus musculus]. 318 1e-86
Alignment gi|NP_038667.2| peripherin isoform 1 [Mus musculus]. 313 3e-85
Alignment gi|NP_001124492.1| glial fibrillary acidic protein isoform 1 [M... 287 2e-77
Alignment gi|NP_666212.3| alpha-internexin [Mus musculus]. 241 9e-64
Alignment gi|NP_035040.1| neurofilament light polypeptide [Mus musculus]. 230 2e-60
Alignment gi|NP_032717.2| neurofilament medium polypeptide [Mus musculus]. 205 1e-52
>ref|NP_034173.1| desmin [Mus musculus].
Length = 469
Score = 491 bits (1265), Expect = e-139
Identities = 257/279 (92%), Positives = 260/279 (93%)
Frame = +2
Query: 80 ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
A+LQEEIQL+EEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVH
Sbjct: 191 AKLQEEIQLREEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQ 250
Query: 260 XXXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN
Sbjct: 251 AQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 310
Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEA+GYQDNIARLE
Sbjct: 311 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEANGYQDNIARLE 370
Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET
Sbjct: 371 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 430
Query: 800 SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL
Sbjct: 431 SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 469
>ref|NP_035831.2| vimentin [Mus musculus].
Length = 466
Score = 357 bits (917), Expect = 1e-98
Identities = 180/279 (64%), Positives = 227/279 (81%), Gaps = 1/279 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQEE+ +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H
Sbjct: 188 KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
+D+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248 QIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
ALRQAKQE EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308 ALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDTIGRLQD 367
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI+LP+ TFS+LN RET+
Sbjct: 368 EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPTFSSLNLRETN 427
Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
E + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 428 LESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 465
>ref|NP_001157061.1| peripherin isoform 3 [Mus musculus].
Length = 475
Score = 328 bits (840), Expect = 1e-89
Identities = 172/282 (60%), Positives = 219/282 (77%), Gaps = 4/282 (1%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
RL+EE + +E+AE+NL FR DVD ATL+R++LER+IESL +EI FLKK+H
Sbjct: 186 RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQV 245
Query: 263 XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
+ KP+LTAALRDIRAQYE IAAKN+ EAEEWYKSK +DL+ AAN+N
Sbjct: 246 SVESQQVQQVEVEATVKPELTAALRDIRAQYENIAAKNLQEAEEWYKSKYADLSDAANRN 305
Query: 437 NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
++ALRQAKQEM E R QIQS CE+D L+GTN++L+RQ+RELE++FA EA GYQ ARL
Sbjct: 306 HEALRQAKQEMNESRRQIQSLMCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARL 365
Query: 617 EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ +
Sbjct: 366 EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSLKT 425
Query: 797 TSPEQRG-SEVHTKKTVMIKTIETRDGE-VVSEATQQQHEVL 916
T PE + H+KK V+I+TIETRDGE VV+E+ ++QH L
Sbjct: 426 TVPEMEPLQDSHSKKMVLIRTIETRDGEKVVTESQKEQHSDL 467
>ref|NP_034407.2| glial fibrillary acidic protein isoform 2 [Mus musculus].
Length = 430
Score = 320 bits (821), Expect = 2e-87
Identities = 157/279 (56%), Positives = 213/279 (76%), Gaps = 1/279 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQ+E L+ EAENNLAA+R + D ATLAR+DLER++ESL EEI FL+K++
Sbjct: 151 KLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELRE 210
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
MD++KPDLTAALR+IR QYE +A N+ E EEWY+SK +DLT AA++N +
Sbjct: 211 QLAQQQVHVEMDVAKPDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAE 270
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
LRQAK E +YR Q+Q+ TC++++L+GTN+SL RQMRE E+R A E++ YQ+ +ARLEE
Sbjct: 271 LLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEE 330
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
E + LK+EMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L RETS
Sbjct: 331 EGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 390
Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
+ + SE H K+ +++KT+E RDGEV+ ++ Q+ +V+
Sbjct: 391 LDTKSVSEGHLKRNIVVKTVEMRDGEVIKDSKQEHKDVV 429
>ref|NP_001157060.1| peripherin isoform 2 [Mus musculus].
Length = 506
Score = 318 bits (814), Expect = 1e-86
Identities = 173/313 (55%), Positives = 220/313 (70%), Gaps = 35/313 (11%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
RL+EE + +E+AE+NL FR DVD ATL+R++LER+IESL +EI FLKK+H
Sbjct: 186 RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQV 245
Query: 263 XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKV---------- 406
+ KP+LTAALRDIRAQYE IAAKN+ EAEEWYKSKV
Sbjct: 246 SVESQQVQQVEVEATVKPELTAALRDIRAQYENIAAKNLQEAEEWYKSKVREHWGNPGGP 305
Query: 407 ----------------------SDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDAL 520
+DL+ AAN+N++ALRQAKQEM E R QIQS CE+D L
Sbjct: 306 RVGRHWEWRCASQPGLSATAQYADLSDAANRNHEALRQAKQEMNESRRQIQSLMCEVDGL 365
Query: 521 KGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMAL 700
+GTN++L+RQ+RELE++FA EA GYQ ARLEEE+R LK+EMARHLREYQ+LLNVKMAL
Sbjct: 366 RGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMAL 425
Query: 701 DVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGE 877
D+EIATYRKLLEGEESRI++P+ +F++L+ + T PE + H+KK V+I+TIETRDGE
Sbjct: 426 DIEIATYRKLLEGEESRISVPVHSFASLSLKTTVPEMEPLQDSHSKKMVLIRTIETRDGE 485
Query: 878 VVSEATQQQHEVL 916
VV+E+ ++QH L
Sbjct: 486 VVTESQKEQHSDL 498
>ref|NP_038667.2| peripherin isoform 1 [Mus musculus].
Length = 507
Score = 313 bits (802), Expect = 3e-85
Identities = 173/314 (55%), Positives = 220/314 (70%), Gaps = 36/314 (11%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
RL+EE + +E+AE+NL FR DVD ATL+R++LER+IESL +EI FLKK+H
Sbjct: 186 RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQV 245
Query: 263 XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKV---------- 406
+ KP+LTAALRDIRAQYE IAAKN+ EAEEWYKSKV
Sbjct: 246 SVESQQVQQVEVEATVKPELTAALRDIRAQYENIAAKNLQEAEEWYKSKVREHWGNPGGP 305
Query: 407 ----------------------SDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDAL 520
+DL+ AAN+N++ALRQAKQEM E R QIQS CE+D L
Sbjct: 306 RVGRHWEWRCASQPGLSATAQYADLSDAANRNHEALRQAKQEMNESRRQIQSLMCEVDGL 365
Query: 521 KGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMAL 700
+GTN++L+RQ+RELE++FA EA GYQ ARLEEE+R LK+EMARHLREYQ+LLNVKMAL
Sbjct: 366 RGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMAL 425
Query: 701 DVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGE 877
D+EIATYRKLLEGEESRI++P+ +F++L+ + T PE + H+KK V+I+TIETRDGE
Sbjct: 426 DIEIATYRKLLEGEESRISVPVHSFASLSLKTTVPEMEPLQDSHSKKMVLIRTIETRDGE 485
Query: 878 -VVSEATQQQHEVL 916
VV+E+ ++QH L
Sbjct: 486 KVVTESQKEQHSDL 499
>ref|NP_001124492.1| glial fibrillary acidic protein isoform 1 [Mus musculus].
Length = 428
Score = 287 bits (734), Expect = 2e-77
Identities = 143/250 (57%), Positives = 190/250 (76%), Gaps = 2/250 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQ+E L+ EAENNLAA+R + D ATLAR+DLER++ESL EEI FL+K++
Sbjct: 151 KLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELRE 210
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
MD++KPDLTAALR+IR QYE +A N+ E EEWY+SK +DLT AA++N +
Sbjct: 211 QLAQQQVHVEMDVAKPDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAE 270
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
LRQAK E +YR Q+Q+ TC++++L+GTN+SL RQMRE E+R A E++ YQ+ +ARLEE
Sbjct: 271 LLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEE 330
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR--E 796
E + LK+EMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L R +
Sbjct: 331 EGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRGGK 390
Query: 797 TSPEQRGSEV 826
++ E G +V
Sbjct: 391 STKEGEGQKV 400
>ref|NP_666212.3| alpha-internexin [Mus musculus].
Length = 501
Score = 241 bits (616), Expect = 9e-64
Identities = 124/239 (51%), Positives = 175/239 (73%), Gaps = 3/239 (1%)
Frame = +2
Query: 80 ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
AR +EE + +E AE L A + DVD ATLAR+DLE+++ESL +E+AF+++VH
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239
Query: 260 XXXXXXXXXXX---MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAAN 430
+ ++KPDLT+ALR+IRAQYE++AAKN+ AEEWYKSK ++L + A
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299
Query: 431 KNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIA 610
++ +A+R +++E+ EYR Q+Q+ T EI+ L+G N+SL RQ+ ELE+R ++E +GYQD+I
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVAGYQDSIG 359
Query: 611 RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALN 787
+LE ++R+ K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R + + S LN
Sbjct: 360 QLESDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTGGLSISGLN 418
>ref|NP_035040.1| neurofilament light polypeptide [Mus musculus].
Length = 543
Score = 230 bits (587), Expect = 2e-60
Identities = 133/301 (44%), Positives = 183/301 (60%), Gaps = 24/301 (7%)
Frame = +2
Query: 80 ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
AR +EE+ +E+AE L R D A LAR +LE+RI+SL +EIAFLKKVH
Sbjct: 176 ARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEIAFLKKVHEEEIAELQ 235
Query: 260 XXXXXXXXXXXMDMS-KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
MD+S KPDL+AAL+DIRAQYE +AAKN+ AEEW+KS+ + LT++A KN
Sbjct: 236 AQIQYAQISVEMDVSSKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKN 295
Query: 437 NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
DA+R AK E+ E R +++ T EI+A +G N++L +Q++ELED+ ++ S QD I +L
Sbjct: 296 TDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKL 355
Query: 617 EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP----------- 763
E E+R K EMAR+L+EYQDLLNVKMALD+EIA YRKLLEGEE+R++
Sbjct: 356 ENELRSTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLSFTSVGSITSGYSQ 415
Query: 764 ------------IQTFSALNFRETSPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQH 907
+Q+ S L + P S V ++T + +TIE E + +
Sbjct: 416 SSQVFGRSAYSGLQSSSYLMSARSFPAYYTSHVQEEQTEVEETIEATKAEEAKDEPPSEG 475
Query: 908 E 910
E
Sbjct: 476 E 476
>ref|NP_032717.2| neurofilament medium polypeptide [Mus musculus].
Length = 848
Score = 205 bits (521), Expect = 1e-52
Identities = 99/226 (43%), Positives = 157/226 (69%), Gaps = 1/226 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
R +EE +L+++ E + A R D++ +++ +++L+++++SL +E+AFL+ H
Sbjct: 186 RFEEEARLRDDTEAAIRALRKDIEESSMVKVELDKKVQSLQDEVAFLRSNHEEEVADLLA 245
Query: 263 XXXXXXXXXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
D K D++ AL++IR+Q E + +N+ +AEEW+K + + LT+AA +N
Sbjct: 246 QIQASHITVERKDYLKTDISTALKEIRSQLECHSDQNMHQAEEWFKCRYAKLTEAAEQNK 305
Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
+A+R AK+E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R + S YQD I +LE
Sbjct: 306 EAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLE 365
Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 757
E+R K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +
Sbjct: 366 NELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFS 411
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,085,366
Number of extensions: 1428679
Number of successful extensions: 7035
Number of sequences better than 1.0e-05: 90
Number of HSP's gapped: 6854
Number of HSP's successfully gapped: 90
Length of query: 552
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 446
Effective length of database: 12,433,743
Effective search space: 5545449378
Effective search space used: 5545449378
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000387
(1656 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001535.1| desmin [Sus scrofa]. 494 e-140
Alignment gi|XP_003130769.2| PREDICTED: vimentin-like [Sus scrofa]. 356 2e-98
Alignment gi|XP_003126170.2| PREDICTED: peripherin-like [Sus scrofa]. 334 8e-92
Alignment gi|XP_003126153.1| PREDICTED: peripherin [Sus scrofa]. 334 8e-92
Alignment gi|XP_003131377.1| PREDICTED: glial fibrillary acidic protein [... 323 2e-88
Alignment gi|XP_001929355.2| PREDICTED: alpha-internexin, partial [Sus sc... 240 2e-63
Alignment gi|XP_003132861.1| PREDICTED: neurofilament light polypeptide-l... 229 3e-60
Alignment gi|XP_001928806.2| PREDICTED: neurofilament heavy polypeptide [... 192 6e-49
Alignment gi|XP_001925857.2| PREDICTED: neurofilament medium polypeptide-... 191 8e-49
Alignment gi|NP_001153087.1| keratin, type II cytoskeletal 8 [Sus scrofa]. 171 8e-43
>ref|NP_001001535.1| desmin [Sus scrofa].
Length = 471
Score = 494 bits (1271), Expect = e-140
Identities = 259/279 (92%), Positives = 260/279 (93%)
Frame = +2
Query: 80 ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
A+LQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVH
Sbjct: 193 AKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQ 252
Query: 260 XXXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN
Sbjct: 253 AQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 312
Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE
Sbjct: 313 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 372
Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET
Sbjct: 373 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 432
Query: 800 SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL
Sbjct: 433 SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 471
>ref|XP_003130769.2| PREDICTED: vimentin-like [Sus scrofa].
Length = 466
Score = 356 bits (914), Expect = 2e-98
Identities = 180/279 (64%), Positives = 225/279 (80%), Gaps = 1/279 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQEE +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H
Sbjct: 188 KLQEETLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248 QIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
ALRQAKQE EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308 ALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 367
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI+LP+ FS+LN RET+
Sbjct: 368 EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETN 427
Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
E + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 428 LESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 465
>ref|XP_003126170.2| PREDICTED: peripherin-like [Sus scrofa].
Length = 469
Score = 334 bits (857), Expect = 8e-92
Identities = 172/281 (61%), Positives = 222/281 (79%), Gaps = 3/281 (1%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
RL+EE + +E+AE+NL FR DVD ATL+R++LER+IESL +EI FLKK+H
Sbjct: 181 RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQM 240
Query: 263 XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
+ KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK +DL+ AAN+N
Sbjct: 241 SVESQQVQQFEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRN 300
Query: 437 NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ A+L
Sbjct: 301 HEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAAKL 360
Query: 617 EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ +
Sbjct: 361 EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSIKT 420
Query: 797 TSPE-QRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
T PE + E+H++K V+IKTIETRDGEVV+E+ ++Q L
Sbjct: 421 TVPEVEPPQEIHSRKMVLIKTIETRDGEVVTESQKEQRSEL 461
>ref|XP_003126153.1| PREDICTED: peripherin [Sus scrofa].
Length = 469
Score = 334 bits (857), Expect = 8e-92
Identities = 172/281 (61%), Positives = 222/281 (79%), Gaps = 3/281 (1%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
RL+EE + +E+AE+NL FR DVD ATL+R++LER+IESL +EI FLKK+H
Sbjct: 181 RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQM 240
Query: 263 XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
+ KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK +DL+ AAN+N
Sbjct: 241 SVESQQVQQFEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRN 300
Query: 437 NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ A+L
Sbjct: 301 HEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAAKL 360
Query: 617 EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ +
Sbjct: 361 EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSIKT 420
Query: 797 TSPE-QRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
T PE + E+H++K V+IKTIETRDGEVV+E+ ++Q L
Sbjct: 421 TVPEVEPPQEIHSRKMVLIKTIETRDGEVVTESQKEQRSEL 461
>ref|XP_003131377.1| PREDICTED: glial fibrillary acidic protein [Sus scrofa].
Length = 428
Score = 323 bits (827), Expect = 2e-88
Identities = 160/279 (57%), Positives = 211/279 (75%), Gaps = 1/279 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+LQ+E L+ EAENNLA +R + D ATLAR+DLER+IESL EEI FL+K+H
Sbjct: 150 KLQDETNLRLEAENNLATYRQEADEATLARLDLERKIESLEEEIRFLRKIHDEEVRELQE 209
Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
MD++KPDLTAALR+IR QYE +A N+ EAEEWY+SK +DLT AA +N +
Sbjct: 210 QLAQQQVHVEMDVTKPDLTAALREIRTQYEAVATSNMQEAEEWYRSKFADLTDAAARNAE 269
Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
LRQAK E +YR Q+Q+ TC++++L+GTN+SL RQMRE E+R A EA+ YQ+ + RLEE
Sbjct: 270 LLRQAKHEANDYRRQLQALTCDVESLRGTNESLERQMREQEERHAREAASYQEALTRLEE 329
Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
E + LKDEMARHL+EYQ+LLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L RETS
Sbjct: 330 EGQSLKDEMARHLQEYQELLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 389
Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
+ + SE H K+ +++KT+E RDGEV+ E+ Q+ +V+
Sbjct: 390 LDTKSVSEGHLKRNIVVKTVEMRDGEVIKESKQEHKDVV 428
>ref|XP_001929355.2| PREDICTED: alpha-internexin, partial [Sus scrofa].
Length = 477
Score = 240 bits (612), Expect = 2e-63
Identities = 123/239 (51%), Positives = 174/239 (72%), Gaps = 3/239 (1%)
Frame = +2
Query: 80 ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
AR +EE + +E AE L A + DVD ATLAR+DLE+++ESL +E+AF+++VH
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239
Query: 260 XXXXXXXXXXX---MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAAN 430
+ ++KPDL++ALR+IRAQYE++AAKN+ AEEWYKSK ++L + A
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLSSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299
Query: 431 KNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIA 610
++ +A+R +++E+ EYR Q+Q+ T EI+ L+G N+SL RQ+ ELE+R ++E + YQDNI
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVASYQDNIG 359
Query: 611 RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALN 787
+LE ++R+ K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R + + S LN
Sbjct: 360 QLENDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLN 418
>ref|XP_003132861.1| PREDICTED: neurofilament light polypeptide-like isoform 2 [Sus
scrofa].
Length = 544
Score = 229 bits (585), Expect = 3e-60
Identities = 133/301 (44%), Positives = 182/301 (60%), Gaps = 24/301 (7%)
Frame = +2
Query: 80 ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
AR +EE+ +E+AE L R D A LAR +LE+RI+SL +EIAFLKKVH
Sbjct: 176 ARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEIAFLKKVHEEEIAELQ 235
Query: 260 XXXXXXXXXXXMDMS-KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
MD+S KPDL+AAL+DIRAQYE +AAKN+ AEEW+KS+ + LT++A KN
Sbjct: 236 AQIQYAQISVEMDVSSKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKN 295
Query: 437 NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
DA+R AK E+ E R +++ T EI+A +G N++L +Q++ELED+ ++ S QD I +L
Sbjct: 296 TDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKL 355
Query: 617 EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP----------- 763
E E+R K EMAR+L+EYQDLLNVKMALD+EIA YRKLLEGEE+R++
Sbjct: 356 ENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLSFTSVGSLTTGYSQ 415
Query: 764 ------------IQTFSALNFRETSPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQH 907
+QT S L + P S V ++ + +TIE E + +
Sbjct: 416 SSQVFGRSAYGGLQTSSYLMSTRSFPSYYTSHVQEEQIEVEETIEAAKAEEAKDEPPSEG 475
Query: 908 E 910
E
Sbjct: 476 E 476
>ref|XP_001928806.2| PREDICTED: neurofilament heavy polypeptide [Sus scrofa].
Length = 1049
Score = 192 bits (487), Expect = 6e-49
Identities = 113/281 (40%), Positives = 163/281 (58%), Gaps = 8/281 (2%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
RL +E + +EEAE A A AR++L+++ ++L EE +L++ H
Sbjct: 179 RLDDEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLG 238
Query: 263 XXXXXXXXXXM------DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQA 424
D K D+T+ALR+IRAQ E A ++ ++EEW++ ++ L++A
Sbjct: 239 QIQGSSAAQTQAQAEARDALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVRLDRLSEA 298
Query: 425 ANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDN 604
A N DA+R A++E+ EYR Q+Q+ T E++ALK T DSL RQ ELEDR ++ + YQ+
Sbjct: 299 AKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKDSLERQRSELEDRHQADIASYQEA 358
Query: 605 IARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSAL 784
I +L+ E+R+ K EMA LREYQDLLNVKMALD+EIA YRKLLEGEE RI FS
Sbjct: 359 IQQLDAELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPSPFSLP 418
Query: 785 NFRETSPEQRGSEVHTKKTVMIKTIETRDGE--VVSEATQQ 901
P + + K IK +E + E +V E T++
Sbjct: 419 EGLPKIP-SISTHIKVKSEEKIKVVEKSEKETVIVEEQTEE 458
>ref|XP_001925857.2| PREDICTED: neurofilament medium polypeptide-like isoform 1 [Sus
scrofa].
Length = 412
Score = 191 bits (486), Expect = 8e-49
Identities = 93/215 (43%), Positives = 148/215 (68%), Gaps = 1/215 (0%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
R +EE +L+++ E + A R D++ A+L +++L+++++SL +E+AFL+ H
Sbjct: 188 RFEEEARLRDDTEAAIRALRKDIEEASLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLA 247
Query: 263 XXXXXXXXXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
D K D+++AL++IR+Q E + +N+ +AEEW+K + + LT+AA +N
Sbjct: 248 QIQASHITVERKDYLKTDISSALKEIRSQLECHSDQNMHQAEEWFKCRYAKLTEAAEQNK 307
Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
+A+R AK+E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R + S YQD I +LE
Sbjct: 308 EAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLE 367
Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYR 724
E+R K EMARHLREYQDLLNVKMALD+EIA YR
Sbjct: 368 NELRGTKWEMARHLREYQDLLNVKMALDIEIAAYR 402
>ref|NP_001153087.1| keratin, type II cytoskeletal 8 [Sus scrofa].
Length = 489
Score = 171 bits (434), Expect = 8e-43
Identities = 108/300 (36%), Positives = 156/300 (52%), Gaps = 29/300 (9%)
Frame = +2
Query: 83 RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
+ +EEIQ + + EN + DVD A + +++LE R+E L +EI F ++++
Sbjct: 186 KYEEEIQKRTDMENEFVIIKKDVDEAYMNKVELESRLEGLTDEINFYRQLYEEEIREMQS 245
Query: 263 XXXXXXXXXXMDMSKP-DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
MD S+ DL + +++AQYE IA ++ +EAE Y+ K +L A K+
Sbjct: 246 QISDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAETMYQIKYEELQSLAGKHG 305
Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
D LR+ K E+ E I EI+ LKG SL + + E R Q +A LE
Sbjct: 306 DDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAVKDAQAKLAELE 365
Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
+R K +MAR LREYQ+L+NVK+ALDVEIATYRKLLEGEESR+ +Q S ++ + T
Sbjct: 366 AALRTAKQDMARQLREYQELMNVKLALDVEIATYRKLLEGEESRLESGMQNMS-IHTKTT 424
Query: 800 SPEQRGSEVHT----------------------------KKTVMIKTIETRDGEVVSEAT 895
S G T K V++K IETRDG++VSE++
Sbjct: 425 SGYSGGVTYGTPGFNYSLSSYQSGGLGSVGGSGSFSRTSSKAVVVKKIETRDGKLVSESS 484
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,345,063
Number of extensions: 1126248
Number of successful extensions: 6301
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 6165
Number of HSP's successfully gapped: 65
Length of query: 552
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 448
Effective length of database: 8,754,644
Effective search space: 3922080512
Effective search space used: 3922080512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000387
(1656 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1138 0.0
Sscrofa_Chr05 139 6e-30
Sscrofa_Chr12 131 1e-27
Sscrofa_Chr10 94 3e-16
Sscrofa_Chr14 64 3e-07
>Sscrofa_Chr15
|| Length = 157681621
Score = 1138 bits (574), Expect = 0.0
Identities = 666/700 (95%), Gaps = 4/700 (0%)
Strand = Plus / Plus
Query: 876 aggtcgtcagtgaggccacacagcagcaacacgaggtgctctaaagccagagacccttct 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134566508 aggtcgtcagtgaggccacacagcagcaacacgaggtgctctaaagccagagacccttct 134566567
Query: 936 gccaccagagaccgtcctcagccctaccctcactgcctcctgaagccagccttcttccat 995
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 134566568 gccaccagagaccgtcctcagccctaccctcactgcctcctgaagccagcctccttccat 134566627
Query: 996 cccagggcaccacacccagccacagtgctcccctcacagcctcccacccctgctcactga 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134566628 cccagggcaccacacccagccacagtgctcccctcacagcctcccacccctgctcactga 134566687
Query: 1056 ccacccgtcatggtccccataggggacatggcccattcccgcctgggcacaaggag--nn 1113
||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||
Sbjct: 134566688 ccacccgtcatggtccccacaggggacatagcccattcccgcctgggcacagggagcccc 134566747
Query: 1114 nnnnnnnnnnnnactgtgtgaggtctggatgttggaagtgagtgagcctggcccttggcc 1173
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134566748 cccccgccccccactgtgtgaggtctggatgttggaagtgagtgagcctggcccttggcc 134566807
Query: 1174 gcccttggagtgtgctgggcagggctgggatggagccgagcacagcagtgaccctgcccc 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134566808 gcccttggagtgtgctgggcagggctgggatggagccgagcacagcagtgaccctgcccc 134566867
Query: 1234 tcccacctctgtggcctcaggctctaccctctggctttggagaaggctccagagcagggt 1293
||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct: 134566868 tcccacctctgtggcctcaggctgtagcctctggctttgaagaaggctccagagcagggt 134566927
Query: 1294 gtagggaccccgcagagtcaagttcaaatcccgcggacctccccgnnnnnnnntttcccc 1353
||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 134566928 gtagggaccccgcagagtcaagttcaaatcctgcggacctccccg-ccccccctttcccc 134566986
Query: 1354 agtctgagtcagagagaaagggcagagtcttcagcaagccaggcaggtaactggggacct 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134566987 agtctgagtcagagagaaagggcagagtcttcagcaagccaggcaggtaactggggacct 134567046
Query: 1414 agccaccacctcccatggagaccggagggcttgaaattgacccatggtcccttactttcc 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134567047 agccaccacctcccatggagaccggagggcttgaaattgacccatggtcccttactttcc 134567106
Query: 1474 cagggtgggcttagaaagcaggggctgcaagagggaatccccgaaggtgccagatgtggg 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134567107 cagggtgggcttagaaagcaggggctgcaagagggaatccccgaaggtgccagatgtggg 134567166
Query: 1534 agcaggaaagtcagaaggagaacagggtgggcgagacgct 1573
||||||| |||||||||||| |||||||||||||||||||
Sbjct: 134567167 agcaggagagtcagaaggag-acagggtgggcgagacgct 134567205
Score = 440 bits (222), Expect = e-120
Identities = 222/222 (100%)
Strand = Plus / Plus
Query: 530 aacgattccctgatgaggcagatgcgggagctggaggaccgctttgctagtgaggccagc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134563259 aacgattccctgatgaggcagatgcgggagctggaggaccgctttgctagtgaggccagc 134563318
Query: 590 ggctaccaggacaacatcgcacgcctggaggaggagatccgacacctcaaggatgagatg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134563319 ggctaccaggacaacatcgcacgcctggaggaggagatccgacacctcaaggatgagatg 134563378
Query: 650 gcccgccacctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggag 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134563379 gcccgccacctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggag 134563438
Query: 710 attgccacctaccggaagctgctggagggcgaggagagccgg 751
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134563439 attgccacctaccggaagctgctggagggcgaggagagccgg 134563480
Score = 323 bits (163), Expect = 2e-85
Identities = 166/167 (99%)
Strand = Plus / Plus
Query: 240 aggagatccgagaactgcaggcccagcttcaggaacaacaggtccaggtggagatggaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562412 aggagatccgagaactgcaggcccagcttcaggaacaacaggtccaggtggagatggaca 134562471
Query: 300 tgtccaagccagacctcaccgccgccctcagggacatccgggctcagtacgagaccatcg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562472 tgtccaagccagacctcaccgccgccctcagggacatccgggctcagtacgagaccatcg 134562531
Query: 360 cggctaagaacatctcggaagccgaagagtggtacaagtcaaaggtg 406
|||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 134562532 cggctaagaacatctcagaagccgaagagtggtacaagtcaaaggtg 134562578
Score = 281 bits (142), Expect = 6e-73
Identities = 145/146 (99%)
Strand = Plus / Plus
Query: 1 gcccattccctgggcagcccccagacagtcttcttcattgccacttttgtccctaccgtc 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134561935 gcccattctctgggcagcccccagacagtcttcttcattgccacttttgtccctaccgtc 134561994
Query: 61 tgtccttctgtctgtctcggccaggctgcaagaggaaattcagctgaaagaagaagccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134561995 tgtccttctgtctgtctcggccaggctgcaagaggaaattcagctgaaagaagaagccga 134562054
Query: 121 gaacaatttggctgccttccgagcgg 146
||||||||||||||||||||||||||
Sbjct: 134562055 gaacaatttggctgccttccgagcgg 134562080
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 402 aggtgtccgacctgacccaggcagccaataagaacaatgatgcactgcgccaggccaagc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562740 aggtgtccgacctgacccaggcagccaataagaacaatgatgcactgcgccaggccaagc 134562799
Query: 462 aggagatgatggagtatcgccatcagatccagtcctacacctgcgagatcgatgccctca 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562800 aggagatgatggagtatcgccatcagatccagtcctacacctgcgagatcgatgccctca 134562859
Query: 522 agggcact 529
||||||||
Sbjct: 134562860 agggcact 134562867
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 145 ggatgtggatgcagccactctagctcgaattgacctggagcgcaggatcgaatctctcaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562201 ggatgtggatgcagccactctagctcgaattgacctggagcgcaggatcgaatctctcaa 134562260
Query: 205 cgaggaaatcgcgttccttaagaaagtacacgaagagg 242
||||||||||||||||||||||||||||||||||||||
Sbjct: 134562261 cgaggaaatcgcgttccttaagaaagtacacgaagagg 134562298
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 793 agaaacaagccctgagcaaaggggttctgaggtccataccaagaagacagtgatgatcaa 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134566202 agaaacaagccctgagcaaaggggttctgaggtccataccaagaagacagtgatgatcaa 134566261
Query: 853 gaccatcgagacccgggatggggaggt 879
|||||||||||||||||||||||||||
Sbjct: 134566262 gaccatcgagacccgggatggggaggt 134566288
Score = 89.7 bits (45), Expect = 5e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 750 ggatcaacctccctatccagaccttctctgccctcaacttccgag 794
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134564651 ggatcaacctccctatccagaccttctctgccctcaacttccgag 134564695
>Sscrofa_Chr05
|| Length = 111506441
Score = 139 bits (70), Expect = 6e-30
Identities = 121/138 (87%)
Strand = Plus / Plus
Query: 614 ctggaggaggagatccgacacctcaaggatgagatggcccgccacctgcgcgagtaccag 673
|||||||||||| | || || || ||||| |||||||| | |||||||| |||||||||
Sbjct: 15693967 ctggaggaggagctgcggcagctaaaggaagagatggcgagacacctgcgagagtaccag 15694026
Query: 674 gacctgctcaatgtcaagatggccctggatgtggagattgccacctaccggaagctgctg 733
|| || ||||| ||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct: 15694027 gagctcctcaacgtcaagatggccctggacatcgagatcgccacctaccggaagctgctg 15694086
Query: 734 gagggcgaggagagccgg 751
||||||||||||||||||
Sbjct: 15694087 gagggcgaggagagccgg 15694104
Score = 107 bits (54), Expect = 2e-20
Identities = 81/90 (90%)
Strand = Plus / Minus
Query: 659 ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
||||| ||||||||||| ||| | ||||||||| |||||||||| |||||||| ||||||
Sbjct: 18664283 ctgcgtgagtaccaggaactgatgaatgtcaagctggccctggacgtggagatcgccacc 18664224
Query: 719 taccggaagctgctggagggcgaggagagc 748
||||| |||||||||||||| |||||||||
Sbjct: 18664223 taccgcaagctgctggagggagaggagagc 18664194
Score = 101 bits (51), Expect = 1e-18
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 659 ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
||||| || |||||||| ||| | ||||||||| ||||||||||||||||||| ||||||
Sbjct: 18571185 ctgcgtgactaccaggagctgatgaatgtcaagctggccctggatgtggagatcgccacc 18571126
Query: 719 taccggaagctgctggagggcgaggag 745
||||| ||||| |||||||||||||||
Sbjct: 18571125 taccgcaagctcctggagggcgaggag 18571099
Score = 93.7 bits (47), Expect = 3e-16
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 659 ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
||||| || |||||||| ||| | || |||||| |||| ||||||||||||||||||||
Sbjct: 18428262 ctgcgtgactaccaggagctgatgaacgtcaagctggctttggatgtggagattgccacc 18428203
Query: 719 taccggaagctgctggagggcgaggag 745
||||| |||||||||||||||||||||
Sbjct: 18428202 taccgcaagctgctggagggcgaggag 18428176
Score = 85.7 bits (43), Expect = 7e-14
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 659 ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
||||| ||||||||||| ||| | || |||||| |||||||||| | ||||| ||||||
Sbjct: 18157338 ctgcgtgagtaccaggagctgatgaacgtcaagctggccctggacatcgagatcgccacc 18157397
Query: 719 taccggaagctgctggagggcgaggag 745
||||| |||||||||||||||||||||
Sbjct: 18157398 taccgcaagctgctggagggcgaggag 18157424
Score = 85.7 bits (43), Expect = 7e-14
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 659 ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
||||| ||||||||||| ||| | || |||||| |||||||||| | ||||| ||||||
Sbjct: 18263481 ctgcgtgagtaccaggagctgatgaacgtcaagctggccctggacatcgagatcgccacc 18263422
Query: 719 taccggaagctgctggagggcgaggag 745
||||| |||||||||||||||||||||
Sbjct: 18263421 taccgcaagctgctggagggcgaggag 18263395
Score = 83.8 bits (42), Expect = 3e-13
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 688 caagatggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 745
|||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 18186996 caagctggccctggacgtggagattgccacctacaggaagctgctggaaggcgaggag 18187053
Score = 83.8 bits (42), Expect = 3e-13
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 688 caagatggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 745
|||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 18204730 caagctggccctggacgtggagattgccacctacaggaagctgctggaaggcgaggag 18204787
Score = 83.8 bits (42), Expect = 3e-13
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 688 caagatggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 745
|||| |||||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 18370133 caagctggccctggacgtggagatcgccacctacaggaagctgctggagggcgaggag 18370190
Score = 83.8 bits (42), Expect = 3e-13
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 659 ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
||||||||||||||||| ||| | | | ||| ||||||||||||||||||| ||||||
Sbjct: 18618907 ctgcgcgagtaccaggagctgatgagcttgaagctggccctggatgtggagatcgccacc 18618848
Query: 719 taccggaagctgctggagggcgagga 744
||||| | ||||||||||||||||||
Sbjct: 18618847 taccgcaggctgctggagggcgagga 18618822
Score = 77.8 bits (39), Expect = 2e-11
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 686 gtcaagatggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 745
|||||| |||||||||| |||||||| ||||||||||| |||||||||||| | ||||||
Sbjct: 18603865 gtcaagctggccctggacgtggagatcgccacctaccgaaagctgctggagagtgaggag 18603806
Query: 746 agc 748
|||
Sbjct: 18603805 agc 18603803
Score = 73.8 bits (37), Expect = 3e-10
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 693 tggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 745
|||||||||| |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 18385550 tggccctggacgtggagatcgccacctaccgcaagctgctagagggcgaggag 18385498
Score = 69.9 bits (35), Expect = 4e-09
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 705 tggagattgccacctaccggaagctgctggagggcgaggagagccgg 751
||||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct: 18409742 tggagatcgccacctaccgcaagctgctggagggcgaggagtgccgg 18409696
Score = 69.9 bits (35), Expect = 4e-09
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 693 tggccctggatgtggagattgccacctaccggaagctgctggagggcgaggagagccgg 751
|||||||||| | ||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct: 18442942 tggccctggacatcgagatcgccacctaccgcaagctgctggagggcgaggagtgccgg 18442884
Score = 69.9 bits (35), Expect = 4e-09
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 699 tggatgtggagattgccacctaccggaagctgctggagggcgaggag 745
|||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 18523713 tggacgtggagatcgccacctaccgcaagctgctggagggcgaggag 18523667
Score = 65.9 bits (33), Expect = 7e-08
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 647 atggcccgccacctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtg 706
||||| ||||| ||||| ||||||||||| ||| | ||||||||| |||||||||| |
Sbjct: 18013707 atggcgcgccagctgcgtgagtaccaggagctgatgaatgtcaagttggccctggacatc 18013766
Query: 707 gagattgccacctaccggaagctgctggagggcgaggagagccgg 751
||||| ||||||||| || ||||| || |||||||||| ||||
Sbjct: 18013767 gagatcgccacctacaggcgcctgctagaaggcgaggagatccgg 18013811
Score = 65.9 bits (33), Expect = 7e-08
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 707 gagattgccacctaccggaagctgctggagggcgaggagagccgg 751
||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct: 18586283 gagatcgccacctaccgcaagctgctggagggcgaggagtgccgg 18586239
Score = 61.9 bits (31), Expect = 1e-06
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 705 tggagattgccacctaccggaagctgctggagggcgaggagagccgg 751
||||||| ||||||||||| |||||||||||| |||||||| |||||
Sbjct: 18479994 tggagatcgccacctaccgcaagctgctggagagcgaggagtgccgg 18479948
Score = 60.0 bits (30), Expect = 4e-06
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 329 agggacatccgggctcagtacgagaccatcgcggctaagaacatctcggaagccgaagag 388
||||||||||| || |||||||||| ||| ||||| |||||| | ||| || ||||||
Sbjct: 15693495 agggacatccgcgcccagtacgagagcattgcggcgaagaaccttcaggaggcagaagag 15693554
Query: 389 tggtacaagtcaaaggtg 406
||||||||||| ||||||
Sbjct: 15693555 tggtacaagtccaaggtg 15693572
Score = 60.0 bits (30), Expect = 4e-06
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 659 ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
||||| ||||||||||| || | | ||||| | ||| ||||||| | ||||| |||||
Sbjct: 18124037 ctgcgtgagtaccaggagctcatgattgtcaggctgggcctggattttgagatcgccact 18123978
Query: 719 taccggaagctgctggagggcgaggagagc 748
||||| |||||||||||| |||||||||||
Sbjct: 18123977 taccgcaagctgctggagagcgaggagagc 18123948
>Sscrofa_Chr12
|| Length = 63588571
Score = 131 bits (66), Expect = 1e-27
Identities = 105/118 (88%)
Strand = Plus / Plus
Query: 634 cctcaaggatgagatggcccgccacctgcgcgagtaccaggacctgctcaatgtcaagat 693
||||||||| ||||||||||||||||||| ||||||||||| |||||||| || ||| |
Sbjct: 18705863 cctcaaggacgagatggcccgccacctgcaggagtaccaggagctgctcaacgttaagct 18705922
Query: 694 ggccctggatgtggagattgccacctaccggaagctgctggagggcgaggagagccgg 751
||||||||| | ||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct: 18705923 ggccctggacatcgagatcgccacctacaggaagctgctggagggcgaggagaaccgg 18705980
>Sscrofa_Chr10
|| Length = 79102373
Score = 93.7 bits (47), Expect = 3e-16
Identities = 95/111 (85%)
Strand = Plus / Plus
Query: 638 aaggatgagatggcccgccacctgcgcgagtaccaggacctgctcaatgtcaagatggcc 697
||||| ||||||||||| ||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 48232776 aaggaagagatggcccgtcaccttcgtgaataccaagacctgctgaatgtcaagatggct 48232835
Query: 698 ctggatgtggagattgccacctaccggaagctgctggagggcgaggagagc 748
|| || | ||||||||||||||| ||||||||||||| || || ||||||
Sbjct: 48232836 ctcgacattgagattgccacctacaggaagctgctggaaggagaagagagc 48232886
>Sscrofa_Chr14
|| Length = 153851969
Score = 63.9 bits (32), Expect = 3e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 665 gagtaccaggacctgctcaatgtcaagatggc 696
||||||||||||||||||||||||||||||||
Sbjct: 49579373 gagtaccaggacctgctcaatgtcaagatggc 49579404
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,192,493
Number of extensions: 377
Number of successful extensions: 377
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 34
Length of query: 1656
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1634
Effective length of database: 2,808,408,574
Effective search space: 4588939609916
Effective search space used: 4588939609916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)