Animal-Genome cDNA 20110601C-000387


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000387
         (1656 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001075044.1| desmin [Bos taurus].                              494   e-139
Alignment   gi|NP_776394.2| vimentin [Bos taurus].                               353   2e-97
Alignment   gi|NP_001095848.1| peripherin [Bos taurus].                          332   8e-91
Alignment   gi|NP_776490.2| glial fibrillary acidic protein [Bos taurus].        323   3e-88
Alignment   gi|NP_001069426.1| alpha-internexin [Bos taurus].                    240   3e-63
Alignment   gi|NP_776546.1| neurofilament light polypeptide [Bos taurus].        229   4e-60
Alignment   gi|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide...   206   4e-53
Alignment   gi|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [B...   206   4e-53
Alignment   gi|XP_001252037.1| PREDICTED: neurofilament triplet M protein [...   206   4e-53
Alignment   gi|XP_002694652.1| PREDICTED: neurofilament, heavy polypeptide ...   188   1e-47

>ref|NP_001075044.1| desmin [Bos taurus].
          Length = 470

 Score =  494 bits (1271), Expect = e-139
 Identities = 259/279 (92%), Positives = 260/279 (93%)
 Frame = +2

Query: 80   ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
            A+LQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVH        
Sbjct: 192  AKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQ 251

Query: 260  XXXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
                       MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN
Sbjct: 252  AQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 311

Query: 440  DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
            DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE
Sbjct: 312  DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 371

Query: 620  EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
            EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET
Sbjct: 372  EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 431

Query: 800  SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL
Sbjct: 432  SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 470


>ref|NP_776394.2| vimentin [Bos taurus].
          Length = 466

 Score =  353 bits (907), Expect = 2e-97
 Identities = 177/279 (63%), Positives = 226/279 (81%), Gaps = 1/279 (0%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            +LQEE+  +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H         
Sbjct: 188  KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247

Query: 263  XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                      MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248  QIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307

Query: 443  ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            ALRQAKQE  EYR Q+Q+ TCE+DALKGTN+SL RQMRE+E+ F+ EA+ YQD I RL++
Sbjct: 308  ALRQAKQESNEYRRQVQTLTCEVDALKGTNESLERQMREMEENFSVEAANYQDTIGRLQD 367

Query: 623  EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
            EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI+LP+  FS+LN RET+
Sbjct: 368  EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETN 427

Query: 803  PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
             +     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 428  LDSLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 465


>ref|NP_001095848.1| peripherin [Bos taurus].
          Length = 469

 Score =  332 bits (850), Expect = 8e-91
 Identities = 173/282 (61%), Positives = 222/282 (78%), Gaps = 4/282 (1%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            RL+EE + +E+AE+NL  FR DVD ATL+R++LER+IESL +EI FLKK+H         
Sbjct: 181  RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQL 240

Query: 263  XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
                         +  KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK +DL+ AAN+N
Sbjct: 241  SVESQQVQHVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRN 300

Query: 437  NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
            ++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ   ARL
Sbjct: 301  HEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARL 360

Query: 617  EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
            EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ + 
Sbjct: 361  EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSIKT 420

Query: 797  TSPE-QRGSEVHTKKTVMIKTIETRDGE-VVSEATQQQHEVL 916
            T PE +   E H++K V+I+TIETRDGE VV+E+ ++QH  L
Sbjct: 421  TVPEVEPPQETHSRKMVLIRTIETRDGEQVVTESQKEQHSEL 462


>ref|NP_776490.2| glial fibrillary acidic protein [Bos taurus].
          Length = 428

 Score =  323 bits (828), Expect = 3e-88
 Identities = 161/279 (57%), Positives = 212/279 (75%), Gaps = 1/279 (0%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           +LQ+E   + EAENNLAA+R + D ATLAR+DLER+IESL EEI FL+K+H         
Sbjct: 150 KLQDETNQRLEAENNLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQE 209

Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                     MD++KPDLTAALR+IR QYE +A+ N+ EAEEWY+SK +DL  AA +N +
Sbjct: 210 QLAQQQVHVEMDVAKPDLTAALREIRTQYEAVASSNMHEAEEWYRSKFADLNDAAARNAE 269

Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            LRQAK E  +YR Q+Q+ TC++++L+GTN+SL RQMRE E+R A EA+ YQ+ +ARLEE
Sbjct: 270 LLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHAREAASYQEALARLEE 329

Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
           E + LKDEMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  RETS
Sbjct: 330 EGQSLKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 389

Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            + +  SE H K+ +++KT+E RDGEV+ E+ Q+  +V+
Sbjct: 390 LDTKSVSEGHLKRNIVVKTVEMRDGEVIKESKQEHKDVM 428


>ref|NP_001069426.1| alpha-internexin [Bos taurus].
          Length = 499

 Score =  240 bits (612), Expect = 3e-63
 Identities = 123/239 (51%), Positives = 174/239 (72%), Gaps = 3/239 (1%)
 Frame = +2

Query: 80  ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
           AR +EE + +E AE  L A + DVD ATLAR+DLE+++ESL +E+AF+++VH        
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 260 XXXXXXXXXXX---MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAAN 430
                         + ++KPDL++ALR+IRAQYE++AAKN+  AEEWYKSK ++L + A 
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLSSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 431 KNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIA 610
           ++ +A+R +++E+ EYR Q+Q+ T EI+ L+G N+SL RQ+ ELE+R ++E + YQDNI 
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVASYQDNIG 359

Query: 611 RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALN 787
           +LE ++R+ K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +    + S LN
Sbjct: 360 QLENDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLN 418


>ref|NP_776546.1| neurofilament light polypeptide [Bos taurus].
          Length = 555

 Score =  229 bits (585), Expect = 4e-60
 Identities = 133/301 (44%), Positives = 182/301 (60%), Gaps = 24/301 (7%)
 Frame = +2

Query: 80   ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
            AR +EE+  +E+AE  L   R   D A LAR +LE+RI+SL +EIAFLKKVH        
Sbjct: 176  ARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEIAFLKKVHEEEIAELQ 235

Query: 260  XXXXXXXXXXXMDMS-KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
                       MD+S KPDL+AAL+DIRAQYE +AAKN+  AEEW+KS+ + LT++A KN
Sbjct: 236  AQIQYAQISVEMDVSSKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKN 295

Query: 437  NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
             DA+R AK E+ E R  +++ T EI+A +G N++L +Q++ELED+  ++ S  QD I +L
Sbjct: 296  TDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKL 355

Query: 617  EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP----------- 763
            E E+R  K EMAR+L+EYQDLLNVKMALD+EIA YRKLLEGEE+R++             
Sbjct: 356  ENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLSFTSVGSLTTGYTQ 415

Query: 764  ------------IQTFSALNFRETSPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQH 907
                        +QT S L    + P    S V  ++  + +TIE    E   +    + 
Sbjct: 416  SSQVFGRSAYGGLQTSSYLMSARSFPSYYTSHVQEEQIEVEETIEAAKAEEAKDEPPSEG 475

Query: 908  E 910
            E
Sbjct: 476  E 476


>ref|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
          Length = 931

 Score =  206 bits (525), Expect = 4e-53
 Identities = 100/226 (44%), Positives = 158/226 (69%), Gaps = 1/226 (0%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           R +EE +L+++ E  + A R D++ ++L +++L+++++SL +E+AFL+  H         
Sbjct: 188 RFEEEARLRDDTEAAIRALRKDIEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLA 247

Query: 263 XXXXXXXXXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
                       D  K D++ AL++IR+Q E+ + +N+ +AEEW+K + + LT+AA +N 
Sbjct: 248 QIQASHITVERKDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNK 307

Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
           +A+R AK+E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R   + S YQD I +LE
Sbjct: 308 EAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLE 367

Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 757
            E+R  K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +
Sbjct: 368 NELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFS 413


>ref|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
          Length = 931

 Score =  206 bits (525), Expect = 4e-53
 Identities = 100/226 (44%), Positives = 158/226 (69%), Gaps = 1/226 (0%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           R +EE +L+++ E  + A R D++ ++L +++L+++++SL +E+AFL+  H         
Sbjct: 188 RFEEEARLRDDTEAAIRALRKDIEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLA 247

Query: 263 XXXXXXXXXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
                       D  K D++ AL++IR+Q E+ + +N+ +AEEW+K + + LT+AA +N 
Sbjct: 248 QIQASHITVERKDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNK 307

Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
           +A+R AK+E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R   + S YQD I +LE
Sbjct: 308 EAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLE 367

Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 757
            E+R  K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +
Sbjct: 368 NELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFS 413


>ref|XP_001252037.1| PREDICTED: neurofilament triplet M protein [Bos taurus].
          Length = 931

 Score =  206 bits (525), Expect = 4e-53
 Identities = 100/226 (44%), Positives = 158/226 (69%), Gaps = 1/226 (0%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           R +EE +L+++ E  + A R D++ ++L +++L+++++SL +E+AFL+  H         
Sbjct: 188 RFEEEARLRDDTEAAIRALRKDIEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLA 247

Query: 263 XXXXXXXXXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
                       D  K D++ AL++IR+Q E+ + +N+ +AEEW+K + + LT+AA +N 
Sbjct: 248 QIQASHITVERKDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNK 307

Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
           +A+R AK+E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R   + S YQD I +LE
Sbjct: 308 EAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLE 367

Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 757
            E+R  K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +
Sbjct: 368 NELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFS 413


>ref|XP_002694652.1| PREDICTED: neurofilament, heavy polypeptide 200kDa-like isoform 2
            [Bos taurus].
          Length = 1023

 Score =  188 bits (477), Expect = 1e-47
 Identities = 110/291 (37%), Positives = 167/291 (57%), Gaps = 15/291 (5%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            RL +E + +EEAE    A       A  AR++L+++ ++L EE  +L++ H         
Sbjct: 179  RLDDEARQREEAEAATRALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLG 238

Query: 263  XXXXXXXXXXM----DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAAN 430
                           D  K D+T+ALR+IRAQ E    ++  ++EEW++ ++  L++AA 
Sbjct: 239  QIQSSSAAQTQAEARDALKCDVTSALREIRAQLEGHTVQSTLQSEEWFRVRLDRLSEAAK 298

Query: 431  KNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIA 610
             N DA+R A++E+ EYR Q+Q+ T E++ LK T DSL RQ  ELEDR  ++ + YQ+ I 
Sbjct: 299  VNTDAMRSAQEEISEYRRQLQARTTELETLKSTKDSLERQRSELEDRHQADIASYQEAIQ 358

Query: 611  RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRI-----------N 757
            +L+ E+R+ K EMA  LREYQDLLNVKMALD+EIA YRKLLEGEE RI            
Sbjct: 359  QLDAELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPSPFLLPEG 418

Query: 758  LPIQTFSALNFRETSPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHE 910
            LP     + + +  S E+      ++K  +I   +T + +V  E T+++ +
Sbjct: 419  LPKIPSVSTHIKVKSEEKIKMVEKSEKETVIVEEQTEEVQVTEEVTEEEEK 469


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,760,837
Number of extensions: 1733235
Number of successful extensions: 8771
Number of sequences better than 1.0e-05: 115
Number of HSP's gapped: 8578
Number of HSP's successfully gapped: 116
Length of query: 552
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 445
Effective length of database: 14,140,958
Effective search space: 6292726310
Effective search space used: 6292726310
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000387
         (1656 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001012394.1| desmin [Canis lupus familiaris].                  492   e-139
Alignment   gi|XP_856478.1| PREDICTED: similar to vimentin isoform 12 [Cani...   355   9e-98
Alignment   gi|XP_535175.2| PREDICTED: similar to vimentin isoform 1 [Canis...   355   9e-98
Alignment   gi|XP_856433.1| PREDICTED: similar to vimentin isoform 11 [Cani...   350   2e-96
Alignment   gi|XP_856390.1| PREDICTED: similar to vimentin isoform 10 [Cani...   350   2e-96
Alignment   gi|XP_534812.2| PREDICTED: similar to peripherin isoform 1 [Can...   330   2e-90
Alignment   gi|XP_848378.1| PREDICTED: similar to Glial fibrillary acidic p...   325   1e-88
Alignment   gi|XP_861904.1| PREDICTED: similar to peripherin isoform 3 [Can...   323   4e-88
Alignment   gi|XP_856348.1| PREDICTED: similar to vimentin isoform 9 [Canis...   323   4e-88
Alignment   gi|XP_856267.1| PREDICTED: similar to vimentin isoform 7 [Canis...   322   9e-88

>ref|NP_001012394.1| desmin [Canis lupus familiaris].
          Length = 469

 Score =  492 bits (1266), Expect = e-139
 Identities = 257/279 (92%), Positives = 260/279 (93%)
 Frame = +2

Query: 80   ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
            A+LQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVH        
Sbjct: 191  AKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQ 250

Query: 260  XXXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
                       MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN
Sbjct: 251  AQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 310

Query: 440  DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
            DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRE+EDRFASEASGYQDNIARLE
Sbjct: 311  DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMREMEDRFASEASGYQDNIARLE 370

Query: 620  EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
            EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQT+SALNFRET
Sbjct: 371  EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTYSALNFRET 430

Query: 800  SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL
Sbjct: 431  SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 469


>ref|XP_856478.1| PREDICTED: similar to vimentin isoform 12 [Canis familiaris].
          Length = 466

 Score =  355 bits (910), Expect = 9e-98
 Identities = 179/279 (64%), Positives = 225/279 (80%), Gaps = 1/279 (0%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            +LQEE+  +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H         
Sbjct: 188  KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247

Query: 263  XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                      MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248  QIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307

Query: 443  ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            ALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308  ALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 367

Query: 623  EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
            EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI LP+  FS+LN RET+
Sbjct: 368  EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETN 427

Query: 803  PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
             +     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 428  LDSLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 465


>ref|XP_535175.2| PREDICTED: similar to vimentin isoform 1 [Canis familiaris].
          Length = 466

 Score =  355 bits (910), Expect = 9e-98
 Identities = 179/279 (64%), Positives = 225/279 (80%), Gaps = 1/279 (0%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            +LQEE+  +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H         
Sbjct: 188  KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247

Query: 263  XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                      MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248  QIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307

Query: 443  ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            ALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308  ALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 367

Query: 623  EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
            EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI LP+  FS+LN RET+
Sbjct: 368  EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETN 427

Query: 803  PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
             +     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 428  LDSLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 465


>ref|XP_856433.1| PREDICTED: similar to vimentin isoform 11 [Canis familiaris].
          Length = 460

 Score =  350 bits (899), Expect = 2e-96
 Identities = 179/279 (64%), Positives = 225/279 (80%), Gaps = 1/279 (0%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            +LQEE+  +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H         
Sbjct: 188  KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEAQIQDQH 247

Query: 263  XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                      MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248  VQID------MDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 301

Query: 443  ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            ALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 302  ALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 361

Query: 623  EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
            EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI LP+  FS+LN RET+
Sbjct: 362  EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETN 421

Query: 803  PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
             +     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 422  LDSLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 459


>ref|XP_856390.1| PREDICTED: similar to vimentin isoform 10 [Canis familiaris].
          Length = 465

 Score =  350 bits (899), Expect = 2e-96
 Identities = 177/276 (64%), Positives = 222/276 (80%), Gaps = 1/276 (0%)
 Frame = +2

Query: 92   EEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXX 271
            EE+  +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H            
Sbjct: 190  EEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQ 249

Query: 272  XXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALR 451
                   MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALR
Sbjct: 250  DQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALR 309

Query: 452  QAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIR 631
            QAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++EI+
Sbjct: 310  QAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQ 369

Query: 632  HLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQ 811
            ++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI LP+  FS+LN RET+ + 
Sbjct: 370  NMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDS 429

Query: 812  RG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
                + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 430  LPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 464


>ref|XP_534812.2| PREDICTED: similar to peripherin isoform 1 [Canis familiaris].
          Length = 469

 Score =  330 bits (846), Expect = 2e-90
 Identities = 171/281 (60%), Positives = 220/281 (78%), Gaps = 3/281 (1%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            RL+EE + +E+AE+NL  FR DVD ATL+R++LER+IESL +EI FLKK+H         
Sbjct: 181  RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQV 240

Query: 263  XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
                         +  KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK  DL+ AAN+N
Sbjct: 241  SVESQQVQQVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYGDLSDAANRN 300

Query: 437  NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
            ++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ   ARL
Sbjct: 301  HEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARL 360

Query: 617  EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
            EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ + 
Sbjct: 361  EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSMKT 420

Query: 797  TSPE-QRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            + PE +   + H++K V+IKTIETRDGEVV+E+ ++Q   L
Sbjct: 421  SVPEVEPPQDSHSRKMVLIKTIETRDGEVVTESQKEQRSDL 461


>ref|XP_848378.1| PREDICTED: similar to Glial fibrillary acidic protein, astrocyte
           (GFAP) isoform 2 [Canis familiaris].
          Length = 433

 Score =  325 bits (832), Expect = 1e-88
 Identities = 161/279 (57%), Positives = 214/279 (76%), Gaps = 1/279 (0%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           + Q+E  L+ EAENNLA++R + D ATLAR+DLER+IESL EEI FL+K+H         
Sbjct: 155 KFQDETNLRLEAENNLASYRQEADEATLARLDLERKIESLEEEIRFLRKIHDEEVQELQE 214

Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                     +D++KPDLTAALR+IR QYE +A+ N+ EAEEWY+SK +DLT AA +N +
Sbjct: 215 QLARQQVHVELDVAKPDLTAALREIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAE 274

Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            LRQAK E  +YR Q+Q+ TC++++L+GTN+SL RQMRE E+R A EA+ YQ+ +ARLEE
Sbjct: 275 LLRQAKHEANDYRRQLQTLTCDLESLRGTNESLERQMREQEERHAREAASYQEALARLEE 334

Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
           E ++LKDEMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  RETS
Sbjct: 335 EGQNLKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 394

Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            + +  SE H K+ +++KT+E RDGEV+ E+ Q+  EV+
Sbjct: 395 LDTKSVSEGHLKRNIVVKTVEMRDGEVIKESKQEHKEVM 433


>ref|XP_861904.1| PREDICTED: similar to peripherin isoform 3 [Canis familiaris].
          Length = 453

 Score =  323 bits (827), Expect = 4e-88
 Identities = 167/269 (62%), Positives = 212/269 (78%), Gaps = 3/269 (1%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           RL+EE + +E+AE+NL  FR DVD ATL+R++LER+IESL +EI FLKK+H         
Sbjct: 181 RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQV 240

Query: 263 XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
                        +  KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK  DL+ AAN+N
Sbjct: 241 SVESQQVQQVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYGDLSDAANRN 300

Query: 437 NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
           ++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ   ARL
Sbjct: 301 HEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARL 360

Query: 617 EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
           EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ + 
Sbjct: 361 EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSMKT 420

Query: 797 TSPE-QRGSEVHTKKTVMIKTIETRDGEV 880
           + PE +   + H++K V+IKTIETRDGEV
Sbjct: 421 SVPEVEPPQDSHSRKMVLIKTIETRDGEV 449


>ref|XP_856348.1| PREDICTED: similar to vimentin isoform 9 [Canis familiaris].
          Length = 458

 Score =  323 bits (827), Expect = 4e-88
 Identities = 169/279 (60%), Positives = 214/279 (76%), Gaps = 1/279 (0%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           +LQEE+  +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H         
Sbjct: 188 KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247

Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                     MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248 QIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307

Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
           ALRQAKQE  EYR Q  S+          N+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308 ALRQAKQESNEYRRQPFSFL--------QNESLERQMREMEENFAVEAANYQDTIGRLQD 359

Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
           EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI LP+  FS+LN RET+
Sbjct: 360 EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETN 419

Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            +     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 420 LDSLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 457


>ref|XP_856267.1| PREDICTED: similar to vimentin isoform 7 [Canis familiaris].
          Length = 433

 Score =  322 bits (824), Expect = 9e-88
 Identities = 160/237 (67%), Positives = 194/237 (81%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           +LQEE+  +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H         
Sbjct: 188 KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247

Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                     MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248 QIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307

Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
           ALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308 ALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 367

Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR 793
           EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI LP+  FS+LN R
Sbjct: 368 EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLR 424


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,638,742
Number of extensions: 1798506
Number of successful extensions: 9663
Number of sequences better than 1.0e-05: 118
Number of HSP's gapped: 9355
Number of HSP's successfully gapped: 126
Length of query: 552
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 444
Effective length of database: 15,274,216
Effective search space: 6781751904
Effective search space used: 6781751904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000387
         (1656 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001918.3| desmin [Homo sapiens].                               493   e-139
Alignment   gi|NP_003371.2| vimentin [Homo sapiens].                             357   2e-98
Alignment   gi|NP_006253.2| peripherin [Homo sapiens].                           335   1e-91
Alignment   gi|NP_002046.1| glial fibrillary acidic protein isoform 1 [Homo...   324   2e-88
Alignment   gi|NP_001124491.1| glial fibrillary acidic protein isoform 2 [H...   289   6e-78
Alignment   gi|NP_001229305.1| glial fibrillary acidic protein isoform 3 [H...   288   1e-77
Alignment   gi|NP_116116.1| alpha-internexin [Homo sapiens].                     242   6e-64
Alignment   gi|NP_006149.2| neurofilament light polypeptide [Homo sapiens].      232   9e-61
Alignment   gi|NP_005373.2| neurofilament medium polypeptide isoform 1 [Hom...   208   1e-53
Alignment   gi|NP_066554.2| neurofilament heavy polypeptide [Homo sapiens].      193   3e-49

>ref|NP_001918.3| desmin [Homo sapiens].
          Length = 470

 Score =  493 bits (1268), Expect = e-139
 Identities = 258/279 (92%), Positives = 260/279 (93%)
 Frame = +2

Query: 80   ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
            A+LQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVH        
Sbjct: 192  AKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQ 251

Query: 260  XXXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
                       MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN
Sbjct: 252  AQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 311

Query: 440  DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
            DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE
Sbjct: 312  DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 371

Query: 620  EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
            EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQT+SALNFRET
Sbjct: 372  EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTYSALNFRET 431

Query: 800  SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL
Sbjct: 432  SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 470


>ref|NP_003371.2| vimentin [Homo sapiens].
          Length = 466

 Score =  357 bits (915), Expect = 2e-98
 Identities = 179/279 (64%), Positives = 226/279 (81%), Gaps = 1/279 (0%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            +LQEE+  +EEAEN L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H         
Sbjct: 188  KLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQA 247

Query: 263  XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                      +D+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248  QIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307

Query: 443  ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            ALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308  ALRQAKQESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 367

Query: 623  EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
            EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI+LP+  FS+LN RET+
Sbjct: 368  EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETN 427

Query: 803  PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
             +     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 428  LDSLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 465


>ref|NP_006253.2| peripherin [Homo sapiens].
          Length = 470

 Score =  335 bits (858), Expect = 1e-91
 Identities = 173/281 (61%), Positives = 222/281 (79%), Gaps = 3/281 (1%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            RL+EE + +E+AE+NL  FR DVD ATL+R++LER+IESL +EI FLKK+H         
Sbjct: 182  RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQV 241

Query: 263  XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
                         +  KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK +DL+ AAN+N
Sbjct: 242  SVESQQVQQVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRN 301

Query: 437  NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
            ++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ   ARL
Sbjct: 302  HEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARL 361

Query: 617  EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
            EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++LN + 
Sbjct: 362  EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLNIKT 421

Query: 797  TSPE-QRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            T PE +   + H++KTV+IKTIETR+GEVV+E+ ++Q   L
Sbjct: 422  TVPEVEPPQDSHSRKTVLIKTIETRNGEVVTESQKEQRSEL 462


>ref|NP_002046.1| glial fibrillary acidic protein isoform 1 [Homo sapiens].
          Length = 432

 Score =  324 bits (830), Expect = 2e-88
 Identities = 161/279 (57%), Positives = 213/279 (76%), Gaps = 1/279 (0%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           +LQ+E  L+ EAENNLAA+R + D ATLAR+DLER+IESL EEI FL+K+H         
Sbjct: 154 KLQDETNLRLEAENNLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQE 213

Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                     +D++KPDLTAAL++IR QYE +A+ N+ EAEEWY+SK +DLT AA +N +
Sbjct: 214 QLARQQVHVELDVAKPDLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAE 273

Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            LRQAK E  +YR Q+QS TC++++L+GTN+SL RQMRE E+R   EA+ YQ+ +ARLEE
Sbjct: 274 LLRQAKHEANDYRRQLQSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALARLEE 333

Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
           E + LKDEMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  RETS
Sbjct: 334 EGQSLKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 393

Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            + +  SE H K+ +++KT+E RDGEV+ E+ Q+  +V+
Sbjct: 394 LDTKSVSEGHLKRNIVVKTVEMRDGEVIKESKQEHKDVM 432


>ref|NP_001124491.1| glial fibrillary acidic protein isoform 2 [Homo sapiens].
          Length = 431

 Score =  289 bits (739), Expect = 6e-78
 Identities = 148/271 (54%), Positives = 196/271 (72%), Gaps = 3/271 (1%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           +LQ+E  L+ EAENNLAA+R + D ATLAR+DLER+IESL EEI FL+K+H         
Sbjct: 154 KLQDETNLRLEAENNLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQE 213

Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                     +D++KPDLTAAL++IR QYE +A+ N+ EAEEWY+SK +DLT AA +N +
Sbjct: 214 QLARQQVHVELDVAKPDLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAE 273

Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            LRQAK E  +YR Q+QS TC++++L+GTN+SL RQMRE E+R   EA+ YQ+ +ARLEE
Sbjct: 274 LLRQAKHEANDYRRQLQSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALARLEE 333

Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR--- 793
           E + LKDEMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  R   
Sbjct: 334 EGQSLKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRGGK 393

Query: 794 ETSPEQRGSEVHTKKTVMIKTIETRDGEVVS 886
            T   +        K++ I+ I  +  ++V+
Sbjct: 394 STKDGENHKVTRYLKSLTIRVIPIQAHQIVN 424


>ref|NP_001229305.1| glial fibrillary acidic protein isoform 3 [Homo sapiens].
          Length = 438

 Score =  288 bits (736), Expect = 1e-77
 Identities = 143/237 (60%), Positives = 183/237 (77%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           +LQ+E  L+ EAENNLAA+R + D ATLAR+DLER+IESL EEI FL+K+H         
Sbjct: 154 KLQDETNLRLEAENNLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQE 213

Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                     +D++KPDLTAAL++IR QYE +A+ N+ EAEEWY+SK +DLT AA +N +
Sbjct: 214 QLARQQVHVELDVAKPDLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAE 273

Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            LRQAK E  +YR Q+QS TC++++L+GTN+SL RQMRE E+R   EA+ YQ+ +ARLEE
Sbjct: 274 LLRQAKHEANDYRRQLQSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALARLEE 333

Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR 793
           E + LKDEMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  R
Sbjct: 334 EGQSLKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIR 390


>ref|NP_116116.1| alpha-internexin [Homo sapiens].
          Length = 499

 Score =  242 bits (618), Expect = 6e-64
 Identities = 124/239 (51%), Positives = 175/239 (73%), Gaps = 3/239 (1%)
 Frame = +2

Query: 80  ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
           AR +EE + +E AE  L A + DVD ATLAR+DLE+++ESL +E+AF+++VH        
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 260 XXXXXXXXXXX---MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAAN 430
                         + ++KPDLT+ALR+IRAQYE++AAKN+  AEEWYKSK ++L + A 
Sbjct: 240 ATLQASSQAAAEVDVTVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 431 KNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIA 610
           ++ +A+R +++E+ EYR Q+Q+ T EI+ L+G N+SL RQ+ ELE+R ++E +GYQD+I 
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVAGYQDSIG 359

Query: 611 RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALN 787
           +LE ++R+ K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +    + S LN
Sbjct: 360 QLENDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLN 418


>ref|NP_006149.2| neurofilament light polypeptide [Homo sapiens].
          Length = 543

 Score =  232 bits (591), Expect = 9e-61
 Identities = 131/300 (43%), Positives = 182/300 (60%), Gaps = 23/300 (7%)
 Frame = +2

Query: 80   ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
            AR +EE+  +E+AE  L   R   D A LAR +LE+RI+SL +EI+FLKKVH        
Sbjct: 176  ARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEISFLKKVHEEEIAELQ 235

Query: 260  XXXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
                       MD++KPDL+AAL+DIRAQYE +AAKN+  AEEW+KS+ + LT++A KN 
Sbjct: 236  AQIQYAQISVEMDVTKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKNT 295

Query: 440  DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
            DA+R AK E+ E R  +++ T EI+A +G N++L +Q++ELED+  ++ S  QD I +LE
Sbjct: 296  DAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKLE 355

Query: 620  EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP------------ 763
             E+R  K EMAR+L+EYQDLLNVKMALD+EIA YRKLLEGEE+R++              
Sbjct: 356  NELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLSFTSVGSITSGYSQS 415

Query: 764  -----------IQTFSALNFRETSPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHE 910
                       +QT S L    + P    S V  ++  + +TIE    E   +    + E
Sbjct: 416  SQVFGRSAYGGLQTSSYLMSTRSFPSYYTSHVQEEQIEVEETIEAAKAEEAKDEPPSEGE 475


>ref|NP_005373.2| neurofilament medium polypeptide isoform 1 [Homo sapiens].
          Length = 916

 Score =  208 bits (530), Expect = 1e-53
 Identities = 109/278 (39%), Positives = 177/278 (63%), Gaps = 2/278 (0%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            R +EE +L+++ E  + A R D++ A+L +++L+++++SL +E+AFL+  H         
Sbjct: 188  RFEEEARLRDDTEAAIRALRKDIEEASLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLA 247

Query: 263  XXXXXXXXXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
                        D  K D++ AL++IR+Q E+ + +N+ +AEEW+K + + LT+AA +N 
Sbjct: 248  QIQASHITVERKDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNK 307

Query: 440  DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
            +A+R AK+E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R   + S YQD I +LE
Sbjct: 308  EAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLE 367

Query: 620  EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
             E+R  K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +    + +   +   
Sbjct: 368  NELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTFAGSITGPLYTHR 427

Query: 800  SPEQRGSEVHTKKTVMIK-TIETRDGEVVSEATQQQHE 910
             P    S++   K    K  ++ +  E + E T+ + E
Sbjct: 428  PPITISSKIQKPKVEAPKLKVQHKFVEEIIEETKVEDE 465


>ref|NP_066554.2| neurofilament heavy polypeptide [Homo sapiens].
          Length = 1020

 Score =  193 bits (491), Expect = 3e-49
 Identities = 117/288 (40%), Positives = 164/288 (56%), Gaps = 11/288 (3%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            RL +E + +EEAE    A       A  AR+DL+++ ++L EE  +L++ H         
Sbjct: 184  RLDDEARQREEAEAAARALARFAQEAEAARVDLQKKAQALQEECGYLRRHHQEEVGELLG 243

Query: 263  XXXXXXXXXXM------DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQA 424
                             D  K D+T+ALR+IRAQ E  A ++  ++EEW++ ++  L++A
Sbjct: 244  QIQGSGAAQAQMQAETRDALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVRLDRLSEA 303

Query: 425  ANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDN 604
            A  N DA+R A++E+ EYR Q+Q+ T E++ALK T DSL RQ  ELEDR  ++ + YQ+ 
Sbjct: 304  AKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKDSLERQRSELEDRHQADIASYQEA 363

Query: 605  IARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSAL 784
            I +L+ E+R+ K EMA  LREYQDLLNVKMALD+EIA YRKLLEGEE RI      FS  
Sbjct: 364  IQQLDAELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPIPFSLP 423

Query: 785  NFRETSPEQRGSEVHTKKTVMIKTIETRDGEVV-----SEATQQQHEV 913
                  P    + +  K    IK +E  + E V     +E TQ   EV
Sbjct: 424  EGLPKIPSV-STHIKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEV 470


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,122,714
Number of extensions: 1739889
Number of successful extensions: 8953
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 8779
Number of HSP's successfully gapped: 90
Length of query: 552
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 444
Effective length of database: 14,737,052
Effective search space: 6543251088
Effective search space used: 6543251088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000387
         (1656 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034173.1| desmin [Mus musculus].                               491   e-139
Alignment   gi|NP_035831.2| vimentin [Mus musculus].                             357   1e-98
Alignment   gi|NP_001157061.1| peripherin isoform 3 [Mus musculus].              328   1e-89
Alignment   gi|NP_034407.2| glial fibrillary acidic protein isoform 2 [Mus ...   320   2e-87
Alignment   gi|NP_001157060.1| peripherin isoform 2 [Mus musculus].              318   1e-86
Alignment   gi|NP_038667.2| peripherin isoform 1 [Mus musculus].                 313   3e-85
Alignment   gi|NP_001124492.1| glial fibrillary acidic protein isoform 1 [M...   287   2e-77
Alignment   gi|NP_666212.3| alpha-internexin [Mus musculus].                     241   9e-64
Alignment   gi|NP_035040.1| neurofilament light polypeptide [Mus musculus].      230   2e-60
Alignment   gi|NP_032717.2| neurofilament medium polypeptide [Mus musculus].     205   1e-52

>ref|NP_034173.1| desmin [Mus musculus].
          Length = 469

 Score =  491 bits (1265), Expect = e-139
 Identities = 257/279 (92%), Positives = 260/279 (93%)
 Frame = +2

Query: 80   ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
            A+LQEEIQL+EEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVH        
Sbjct: 191  AKLQEEIQLREEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQ 250

Query: 260  XXXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
                       MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN
Sbjct: 251  AQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 310

Query: 440  DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
            DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEA+GYQDNIARLE
Sbjct: 311  DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEANGYQDNIARLE 370

Query: 620  EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
            EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET
Sbjct: 371  EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 430

Query: 800  SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL
Sbjct: 431  SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 469


>ref|NP_035831.2| vimentin [Mus musculus].
          Length = 466

 Score =  357 bits (917), Expect = 1e-98
 Identities = 180/279 (64%), Positives = 227/279 (81%), Gaps = 1/279 (0%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            +LQEE+  +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H         
Sbjct: 188  KLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247

Query: 263  XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                      +D+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248  QIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307

Query: 443  ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            ALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308  ALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDTIGRLQD 367

Query: 623  EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
            EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI+LP+ TFS+LN RET+
Sbjct: 368  EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPTFSSLNLRETN 427

Query: 803  PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
             E     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 428  LESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 465


>ref|NP_001157061.1| peripherin isoform 3 [Mus musculus].
          Length = 475

 Score =  328 bits (840), Expect = 1e-89
 Identities = 172/282 (60%), Positives = 219/282 (77%), Gaps = 4/282 (1%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            RL+EE + +E+AE+NL  FR DVD ATL+R++LER+IESL +EI FLKK+H         
Sbjct: 186  RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQV 245

Query: 263  XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
                         +  KP+LTAALRDIRAQYE IAAKN+ EAEEWYKSK +DL+ AAN+N
Sbjct: 246  SVESQQVQQVEVEATVKPELTAALRDIRAQYENIAAKNLQEAEEWYKSKYADLSDAANRN 305

Query: 437  NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
            ++ALRQAKQEM E R QIQS  CE+D L+GTN++L+RQ+RELE++FA EA GYQ   ARL
Sbjct: 306  HEALRQAKQEMNESRRQIQSLMCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARL 365

Query: 617  EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
            EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ + 
Sbjct: 366  EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSLKT 425

Query: 797  TSPEQRG-SEVHTKKTVMIKTIETRDGE-VVSEATQQQHEVL 916
            T PE     + H+KK V+I+TIETRDGE VV+E+ ++QH  L
Sbjct: 426  TVPEMEPLQDSHSKKMVLIRTIETRDGEKVVTESQKEQHSDL 467


>ref|NP_034407.2| glial fibrillary acidic protein isoform 2 [Mus musculus].
          Length = 430

 Score =  320 bits (821), Expect = 2e-87
 Identities = 157/279 (56%), Positives = 213/279 (76%), Gaps = 1/279 (0%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           +LQ+E  L+ EAENNLAA+R + D ATLAR+DLER++ESL EEI FL+K++         
Sbjct: 151 KLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELRE 210

Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                     MD++KPDLTAALR+IR QYE +A  N+ E EEWY+SK +DLT AA++N +
Sbjct: 211 QLAQQQVHVEMDVAKPDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAE 270

Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            LRQAK E  +YR Q+Q+ TC++++L+GTN+SL RQMRE E+R A E++ YQ+ +ARLEE
Sbjct: 271 LLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEE 330

Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
           E + LK+EMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  RETS
Sbjct: 331 EGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 390

Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            + +  SE H K+ +++KT+E RDGEV+ ++ Q+  +V+
Sbjct: 391 LDTKSVSEGHLKRNIVVKTVEMRDGEVIKDSKQEHKDVV 429


>ref|NP_001157060.1| peripherin isoform 2 [Mus musculus].
          Length = 506

 Score =  318 bits (814), Expect = 1e-86
 Identities = 173/313 (55%), Positives = 220/313 (70%), Gaps = 35/313 (11%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            RL+EE + +E+AE+NL  FR DVD ATL+R++LER+IESL +EI FLKK+H         
Sbjct: 186  RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQV 245

Query: 263  XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKV---------- 406
                         +  KP+LTAALRDIRAQYE IAAKN+ EAEEWYKSKV          
Sbjct: 246  SVESQQVQQVEVEATVKPELTAALRDIRAQYENIAAKNLQEAEEWYKSKVREHWGNPGGP 305

Query: 407  ----------------------SDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDAL 520
                                  +DL+ AAN+N++ALRQAKQEM E R QIQS  CE+D L
Sbjct: 306  RVGRHWEWRCASQPGLSATAQYADLSDAANRNHEALRQAKQEMNESRRQIQSLMCEVDGL 365

Query: 521  KGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMAL 700
            +GTN++L+RQ+RELE++FA EA GYQ   ARLEEE+R LK+EMARHLREYQ+LLNVKMAL
Sbjct: 366  RGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMAL 425

Query: 701  DVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGE 877
            D+EIATYRKLLEGEESRI++P+ +F++L+ + T PE     + H+KK V+I+TIETRDGE
Sbjct: 426  DIEIATYRKLLEGEESRISVPVHSFASLSLKTTVPEMEPLQDSHSKKMVLIRTIETRDGE 485

Query: 878  VVSEATQQQHEVL 916
            VV+E+ ++QH  L
Sbjct: 486  VVTESQKEQHSDL 498


>ref|NP_038667.2| peripherin isoform 1 [Mus musculus].
          Length = 507

 Score =  313 bits (802), Expect = 3e-85
 Identities = 173/314 (55%), Positives = 220/314 (70%), Gaps = 36/314 (11%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            RL+EE + +E+AE+NL  FR DVD ATL+R++LER+IESL +EI FLKK+H         
Sbjct: 186  RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQV 245

Query: 263  XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKV---------- 406
                         +  KP+LTAALRDIRAQYE IAAKN+ EAEEWYKSKV          
Sbjct: 246  SVESQQVQQVEVEATVKPELTAALRDIRAQYENIAAKNLQEAEEWYKSKVREHWGNPGGP 305

Query: 407  ----------------------SDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDAL 520
                                  +DL+ AAN+N++ALRQAKQEM E R QIQS  CE+D L
Sbjct: 306  RVGRHWEWRCASQPGLSATAQYADLSDAANRNHEALRQAKQEMNESRRQIQSLMCEVDGL 365

Query: 521  KGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMAL 700
            +GTN++L+RQ+RELE++FA EA GYQ   ARLEEE+R LK+EMARHLREYQ+LLNVKMAL
Sbjct: 366  RGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMAL 425

Query: 701  DVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGE 877
            D+EIATYRKLLEGEESRI++P+ +F++L+ + T PE     + H+KK V+I+TIETRDGE
Sbjct: 426  DIEIATYRKLLEGEESRISVPVHSFASLSLKTTVPEMEPLQDSHSKKMVLIRTIETRDGE 485

Query: 878  -VVSEATQQQHEVL 916
             VV+E+ ++QH  L
Sbjct: 486  KVVTESQKEQHSDL 499


>ref|NP_001124492.1| glial fibrillary acidic protein isoform 1 [Mus musculus].
          Length = 428

 Score =  287 bits (734), Expect = 2e-77
 Identities = 143/250 (57%), Positives = 190/250 (76%), Gaps = 2/250 (0%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           +LQ+E  L+ EAENNLAA+R + D ATLAR+DLER++ESL EEI FL+K++         
Sbjct: 151 KLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELRE 210

Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                     MD++KPDLTAALR+IR QYE +A  N+ E EEWY+SK +DLT AA++N +
Sbjct: 211 QLAQQQVHVEMDVAKPDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAE 270

Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            LRQAK E  +YR Q+Q+ TC++++L+GTN+SL RQMRE E+R A E++ YQ+ +ARLEE
Sbjct: 271 LLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEE 330

Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR--E 796
           E + LK+EMARHL+EYQDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  R  +
Sbjct: 331 EGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRGGK 390

Query: 797 TSPEQRGSEV 826
           ++ E  G +V
Sbjct: 391 STKEGEGQKV 400


>ref|NP_666212.3| alpha-internexin [Mus musculus].
          Length = 501

 Score =  241 bits (616), Expect = 9e-64
 Identities = 124/239 (51%), Positives = 175/239 (73%), Gaps = 3/239 (1%)
 Frame = +2

Query: 80  ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
           AR +EE + +E AE  L A + DVD ATLAR+DLE+++ESL +E+AF+++VH        
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 260 XXXXXXXXXXX---MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAAN 430
                         + ++KPDLT+ALR+IRAQYE++AAKN+  AEEWYKSK ++L + A 
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 431 KNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIA 610
           ++ +A+R +++E+ EYR Q+Q+ T EI+ L+G N+SL RQ+ ELE+R ++E +GYQD+I 
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVAGYQDSIG 359

Query: 611 RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALN 787
           +LE ++R+ K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +    + S LN
Sbjct: 360 QLESDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTGGLSISGLN 418


>ref|NP_035040.1| neurofilament light polypeptide [Mus musculus].
          Length = 543

 Score =  230 bits (587), Expect = 2e-60
 Identities = 133/301 (44%), Positives = 183/301 (60%), Gaps = 24/301 (7%)
 Frame = +2

Query: 80   ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
            AR +EE+  +E+AE  L   R   D A LAR +LE+RI+SL +EIAFLKKVH        
Sbjct: 176  ARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEIAFLKKVHEEEIAELQ 235

Query: 260  XXXXXXXXXXXMDMS-KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
                       MD+S KPDL+AAL+DIRAQYE +AAKN+  AEEW+KS+ + LT++A KN
Sbjct: 236  AQIQYAQISVEMDVSSKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKN 295

Query: 437  NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
             DA+R AK E+ E R  +++ T EI+A +G N++L +Q++ELED+  ++ S  QD I +L
Sbjct: 296  TDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKL 355

Query: 617  EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP----------- 763
            E E+R  K EMAR+L+EYQDLLNVKMALD+EIA YRKLLEGEE+R++             
Sbjct: 356  ENELRSTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLSFTSVGSITSGYSQ 415

Query: 764  ------------IQTFSALNFRETSPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQH 907
                        +Q+ S L    + P    S V  ++T + +TIE    E   +    + 
Sbjct: 416  SSQVFGRSAYSGLQSSSYLMSARSFPAYYTSHVQEEQTEVEETIEATKAEEAKDEPPSEG 475

Query: 908  E 910
            E
Sbjct: 476  E 476


>ref|NP_032717.2| neurofilament medium polypeptide [Mus musculus].
          Length = 848

 Score =  205 bits (521), Expect = 1e-52
 Identities = 99/226 (43%), Positives = 157/226 (69%), Gaps = 1/226 (0%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           R +EE +L+++ E  + A R D++ +++ +++L+++++SL +E+AFL+  H         
Sbjct: 186 RFEEEARLRDDTEAAIRALRKDIEESSMVKVELDKKVQSLQDEVAFLRSNHEEEVADLLA 245

Query: 263 XXXXXXXXXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
                       D  K D++ AL++IR+Q E  + +N+ +AEEW+K + + LT+AA +N 
Sbjct: 246 QIQASHITVERKDYLKTDISTALKEIRSQLECHSDQNMHQAEEWFKCRYAKLTEAAEQNK 305

Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
           +A+R AK+E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R   + S YQD I +LE
Sbjct: 306 EAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLE 365

Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 757
            E+R  K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +
Sbjct: 366 NELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFS 411


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,085,366
Number of extensions: 1428679
Number of successful extensions: 7035
Number of sequences better than 1.0e-05: 90
Number of HSP's gapped: 6854
Number of HSP's successfully gapped: 90
Length of query: 552
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 446
Effective length of database: 12,433,743
Effective search space: 5545449378
Effective search space used: 5545449378
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000387
         (1656 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001001535.1| desmin [Sus scrofa].                              494   e-140
Alignment   gi|XP_003130769.2| PREDICTED: vimentin-like [Sus scrofa].            356   2e-98
Alignment   gi|XP_003126170.2| PREDICTED: peripherin-like [Sus scrofa].          334   8e-92
Alignment   gi|XP_003126153.1| PREDICTED: peripherin [Sus scrofa].               334   8e-92
Alignment   gi|XP_003131377.1| PREDICTED: glial fibrillary acidic protein [...   323   2e-88
Alignment   gi|XP_001929355.2| PREDICTED: alpha-internexin, partial [Sus sc...   240   2e-63
Alignment   gi|XP_003132861.1| PREDICTED: neurofilament light polypeptide-l...   229   3e-60
Alignment   gi|XP_001928806.2| PREDICTED: neurofilament heavy polypeptide [...   192   6e-49
Alignment   gi|XP_001925857.2| PREDICTED: neurofilament medium polypeptide-...   191   8e-49
Alignment   gi|NP_001153087.1| keratin, type II cytoskeletal 8 [Sus scrofa].     171   8e-43

>ref|NP_001001535.1| desmin [Sus scrofa].
          Length = 471

 Score =  494 bits (1271), Expect = e-140
 Identities = 259/279 (92%), Positives = 260/279 (93%)
 Frame = +2

Query: 80   ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
            A+LQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVH        
Sbjct: 193  AKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQ 252

Query: 260  XXXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
                       MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN
Sbjct: 253  AQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 312

Query: 440  DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
            DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE
Sbjct: 313  DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 372

Query: 620  EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
            EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET
Sbjct: 373  EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 432

Query: 800  SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL
Sbjct: 433  SPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 471


>ref|XP_003130769.2| PREDICTED: vimentin-like [Sus scrofa].
          Length = 466

 Score =  356 bits (914), Expect = 2e-98
 Identities = 180/279 (64%), Positives = 225/279 (80%), Gaps = 1/279 (0%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            +LQEE   +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H         
Sbjct: 188  KLQEETLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQA 247

Query: 263  XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                      MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NND
Sbjct: 248  QIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307

Query: 443  ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            ALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++
Sbjct: 308  ALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 367

Query: 623  EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
            EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI+LP+  FS+LN RET+
Sbjct: 368  EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETN 427

Query: 803  PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
             E     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 428  LESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 465


>ref|XP_003126170.2| PREDICTED: peripherin-like [Sus scrofa].
          Length = 469

 Score =  334 bits (857), Expect = 8e-92
 Identities = 172/281 (61%), Positives = 222/281 (79%), Gaps = 3/281 (1%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            RL+EE + +E+AE+NL  FR DVD ATL+R++LER+IESL +EI FLKK+H         
Sbjct: 181  RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQM 240

Query: 263  XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
                         +  KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK +DL+ AAN+N
Sbjct: 241  SVESQQVQQFEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRN 300

Query: 437  NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
            ++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ   A+L
Sbjct: 301  HEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAAKL 360

Query: 617  EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
            EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ + 
Sbjct: 361  EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSIKT 420

Query: 797  TSPE-QRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            T PE +   E+H++K V+IKTIETRDGEVV+E+ ++Q   L
Sbjct: 421  TVPEVEPPQEIHSRKMVLIKTIETRDGEVVTESQKEQRSEL 461


>ref|XP_003126153.1| PREDICTED: peripherin [Sus scrofa].
          Length = 469

 Score =  334 bits (857), Expect = 8e-92
 Identities = 172/281 (61%), Positives = 222/281 (79%), Gaps = 3/281 (1%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            RL+EE + +E+AE+NL  FR DVD ATL+R++LER+IESL +EI FLKK+H         
Sbjct: 181  RLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQM 240

Query: 263  XXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
                         +  KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK +DL+ AAN+N
Sbjct: 241  SVESQQVQQFEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRN 300

Query: 437  NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
            ++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ   A+L
Sbjct: 301  HEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAAKL 360

Query: 617  EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRE 796
            EEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ + 
Sbjct: 361  EEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSIKT 420

Query: 797  TSPE-QRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            T PE +   E+H++K V+IKTIETRDGEVV+E+ ++Q   L
Sbjct: 421  TVPEVEPPQEIHSRKMVLIKTIETRDGEVVTESQKEQRSEL 461


>ref|XP_003131377.1| PREDICTED: glial fibrillary acidic protein [Sus scrofa].
          Length = 428

 Score =  323 bits (827), Expect = 2e-88
 Identities = 160/279 (57%), Positives = 211/279 (75%), Gaps = 1/279 (0%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           +LQ+E  L+ EAENNLA +R + D ATLAR+DLER+IESL EEI FL+K+H         
Sbjct: 150 KLQDETNLRLEAENNLATYRQEADEATLARLDLERKIESLEEEIRFLRKIHDEEVRELQE 209

Query: 263 XXXXXXXXXXMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNND 442
                     MD++KPDLTAALR+IR QYE +A  N+ EAEEWY+SK +DLT AA +N +
Sbjct: 210 QLAQQQVHVEMDVTKPDLTAALREIRTQYEAVATSNMQEAEEWYRSKFADLTDAAARNAE 269

Query: 443 ALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEE 622
            LRQAK E  +YR Q+Q+ TC++++L+GTN+SL RQMRE E+R A EA+ YQ+ + RLEE
Sbjct: 270 LLRQAKHEANDYRRQLQALTCDVESLRGTNESLERQMREQEERHAREAASYQEALTRLEE 329

Query: 623 EIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 802
           E + LKDEMARHL+EYQ+LLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  RETS
Sbjct: 330 EGQSLKDEMARHLQEYQELLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 389

Query: 803 PEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 916
            + +  SE H K+ +++KT+E RDGEV+ E+ Q+  +V+
Sbjct: 390 LDTKSVSEGHLKRNIVVKTVEMRDGEVIKESKQEHKDVV 428


>ref|XP_001929355.2| PREDICTED: alpha-internexin, partial [Sus scrofa].
          Length = 477

 Score =  240 bits (612), Expect = 2e-63
 Identities = 123/239 (51%), Positives = 174/239 (72%), Gaps = 3/239 (1%)
 Frame = +2

Query: 80  ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
           AR +EE + +E AE  L A + DVD ATLAR+DLE+++ESL +E+AF+++VH        
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 260 XXXXXXXXXXX---MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAAN 430
                         + ++KPDL++ALR+IRAQYE++AAKN+  AEEWYKSK ++L + A 
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLSSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 431 KNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIA 610
           ++ +A+R +++E+ EYR Q+Q+ T EI+ L+G N+SL RQ+ ELE+R ++E + YQDNI 
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVASYQDNIG 359

Query: 611 RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALN 787
           +LE ++R+ K EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +    + S LN
Sbjct: 360 QLENDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLN 418


>ref|XP_003132861.1| PREDICTED: neurofilament light polypeptide-like isoform 2 [Sus
            scrofa].
          Length = 544

 Score =  229 bits (585), Expect = 3e-60
 Identities = 133/301 (44%), Positives = 182/301 (60%), Gaps = 24/301 (7%)
 Frame = +2

Query: 80   ARLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 259
            AR +EE+  +E+AE  L   R   D A LAR +LE+RI+SL +EIAFLKKVH        
Sbjct: 176  ARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEIAFLKKVHEEEIAELQ 235

Query: 260  XXXXXXXXXXXMDMS-KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKN 436
                       MD+S KPDL+AAL+DIRAQYE +AAKN+  AEEW+KS+ + LT++A KN
Sbjct: 236  AQIQYAQISVEMDVSSKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKN 295

Query: 437  NDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARL 616
             DA+R AK E+ E R  +++ T EI+A +G N++L +Q++ELED+  ++ S  QD I +L
Sbjct: 296  TDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKL 355

Query: 617  EEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP----------- 763
            E E+R  K EMAR+L+EYQDLLNVKMALD+EIA YRKLLEGEE+R++             
Sbjct: 356  ENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLSFTSVGSLTTGYSQ 415

Query: 764  ------------IQTFSALNFRETSPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQH 907
                        +QT S L    + P    S V  ++  + +TIE    E   +    + 
Sbjct: 416  SSQVFGRSAYGGLQTSSYLMSTRSFPSYYTSHVQEEQIEVEETIEAAKAEEAKDEPPSEG 475

Query: 908  E 910
            E
Sbjct: 476  E 476


>ref|XP_001928806.2| PREDICTED: neurofilament heavy polypeptide [Sus scrofa].
          Length = 1049

 Score =  192 bits (487), Expect = 6e-49
 Identities = 113/281 (40%), Positives = 163/281 (58%), Gaps = 8/281 (2%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            RL +E + +EEAE    A       A  AR++L+++ ++L EE  +L++ H         
Sbjct: 179  RLDDEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLG 238

Query: 263  XXXXXXXXXXM------DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQA 424
                             D  K D+T+ALR+IRAQ E  A ++  ++EEW++ ++  L++A
Sbjct: 239  QIQGSSAAQTQAQAEARDALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVRLDRLSEA 298

Query: 425  ANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDN 604
            A  N DA+R A++E+ EYR Q+Q+ T E++ALK T DSL RQ  ELEDR  ++ + YQ+ 
Sbjct: 299  AKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKDSLERQRSELEDRHQADIASYQEA 358

Query: 605  IARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSAL 784
            I +L+ E+R+ K EMA  LREYQDLLNVKMALD+EIA YRKLLEGEE RI      FS  
Sbjct: 359  IQQLDAELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPSPFSLP 418

Query: 785  NFRETSPEQRGSEVHTKKTVMIKTIETRDGE--VVSEATQQ 901
                  P    + +  K    IK +E  + E  +V E T++
Sbjct: 419  EGLPKIP-SISTHIKVKSEEKIKVVEKSEKETVIVEEQTEE 458


>ref|XP_001925857.2| PREDICTED: neurofilament medium polypeptide-like isoform 1 [Sus
           scrofa].
          Length = 412

 Score =  191 bits (486), Expect = 8e-49
 Identities = 93/215 (43%), Positives = 148/215 (68%), Gaps = 1/215 (0%)
 Frame = +2

Query: 83  RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
           R +EE +L+++ E  + A R D++ A+L +++L+++++SL +E+AFL+  H         
Sbjct: 188 RFEEEARLRDDTEAAIRALRKDIEEASLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLA 247

Query: 263 XXXXXXXXXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
                       D  K D+++AL++IR+Q E  + +N+ +AEEW+K + + LT+AA +N 
Sbjct: 248 QIQASHITVERKDYLKTDISSALKEIRSQLECHSDQNMHQAEEWFKCRYAKLTEAAEQNK 307

Query: 440 DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
           +A+R AK+E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R   + S YQD I +LE
Sbjct: 308 EAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLE 367

Query: 620 EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYR 724
            E+R  K EMARHLREYQDLLNVKMALD+EIA YR
Sbjct: 368 NELRGTKWEMARHLREYQDLLNVKMALDIEIAAYR 402


>ref|NP_001153087.1| keratin, type II cytoskeletal 8 [Sus scrofa].
          Length = 489

 Score =  171 bits (434), Expect = 8e-43
 Identities = 108/300 (36%), Positives = 156/300 (52%), Gaps = 29/300 (9%)
 Frame = +2

Query: 83   RLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXX 262
            + +EEIQ + + EN     + DVD A + +++LE R+E L +EI F ++++         
Sbjct: 186  KYEEEIQKRTDMENEFVIIKKDVDEAYMNKVELESRLEGLTDEINFYRQLYEEEIREMQS 245

Query: 263  XXXXXXXXXXMDMSKP-DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNN 439
                      MD S+  DL   + +++AQYE IA ++ +EAE  Y+ K  +L   A K+ 
Sbjct: 246  QISDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAETMYQIKYEELQSLAGKHG 305

Query: 440  DALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLE 619
            D LR+ K E+ E    I     EI+ LKG   SL   + + E R        Q  +A LE
Sbjct: 306  DDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAVKDAQAKLAELE 365

Query: 620  EEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRET 799
              +R  K +MAR LREYQ+L+NVK+ALDVEIATYRKLLEGEESR+   +Q  S ++ + T
Sbjct: 366  AALRTAKQDMARQLREYQELMNVKLALDVEIATYRKLLEGEESRLESGMQNMS-IHTKTT 424

Query: 800  SPEQRGSEVHT----------------------------KKTVMIKTIETRDGEVVSEAT 895
            S    G    T                             K V++K IETRDG++VSE++
Sbjct: 425  SGYSGGVTYGTPGFNYSLSSYQSGGLGSVGGSGSFSRTSSKAVVVKKIETRDGKLVSESS 484


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,345,063
Number of extensions: 1126248
Number of successful extensions: 6301
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 6165
Number of HSP's successfully gapped: 65
Length of query: 552
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 448
Effective length of database: 8,754,644
Effective search space: 3922080512
Effective search space used: 3922080512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000387
         (1656 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                        1138   0.0  
Sscrofa_Chr05                                                         139   6e-30
Sscrofa_Chr12                                                         131   1e-27
Sscrofa_Chr10                                                          94   3e-16
Sscrofa_Chr14                                                          64   3e-07

>Sscrofa_Chr15 
||          Length = 157681621

 Score = 1138 bits (574), Expect = 0.0
 Identities = 666/700 (95%), Gaps = 4/700 (0%)
 Strand = Plus / Plus

                                                                             
Query: 876       aggtcgtcagtgaggccacacagcagcaacacgaggtgctctaaagccagagacccttct 935
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134566508 aggtcgtcagtgaggccacacagcagcaacacgaggtgctctaaagccagagacccttct 134566567

                                                                             
Query: 936       gccaccagagaccgtcctcagccctaccctcactgcctcctgaagccagccttcttccat 995
                 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 134566568 gccaccagagaccgtcctcagccctaccctcactgcctcctgaagccagcctccttccat 134566627

                                                                             
Query: 996       cccagggcaccacacccagccacagtgctcccctcacagcctcccacccctgctcactga 1055
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134566628 cccagggcaccacacccagccacagtgctcccctcacagcctcccacccctgctcactga 134566687

                                                                             
Query: 1056      ccacccgtcatggtccccataggggacatggcccattcccgcctgggcacaaggag--nn 1113
                 ||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
Sbjct: 134566688 ccacccgtcatggtccccacaggggacatagcccattcccgcctgggcacagggagcccc 134566747

                                                                             
Query: 1114      nnnnnnnnnnnnactgtgtgaggtctggatgttggaagtgagtgagcctggcccttggcc 1173
                             ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134566748 cccccgccccccactgtgtgaggtctggatgttggaagtgagtgagcctggcccttggcc 134566807

                                                                             
Query: 1174      gcccttggagtgtgctgggcagggctgggatggagccgagcacagcagtgaccctgcccc 1233
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134566808 gcccttggagtgtgctgggcagggctgggatggagccgagcacagcagtgaccctgcccc 134566867

                                                                             
Query: 1234      tcccacctctgtggcctcaggctctaccctctggctttggagaaggctccagagcagggt 1293
                 ||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct: 134566868 tcccacctctgtggcctcaggctgtagcctctggctttgaagaaggctccagagcagggt 134566927

                                                                             
Query: 1294      gtagggaccccgcagagtcaagttcaaatcccgcggacctccccgnnnnnnnntttcccc 1353
                 ||||||||||||||||||||||||||||||| |||||||||||||        |||||||
Sbjct: 134566928 gtagggaccccgcagagtcaagttcaaatcctgcggacctccccg-ccccccctttcccc 134566986

                                                                             
Query: 1354      agtctgagtcagagagaaagggcagagtcttcagcaagccaggcaggtaactggggacct 1413
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134566987 agtctgagtcagagagaaagggcagagtcttcagcaagccaggcaggtaactggggacct 134567046

                                                                             
Query: 1414      agccaccacctcccatggagaccggagggcttgaaattgacccatggtcccttactttcc 1473
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134567047 agccaccacctcccatggagaccggagggcttgaaattgacccatggtcccttactttcc 134567106

                                                                             
Query: 1474      cagggtgggcttagaaagcaggggctgcaagagggaatccccgaaggtgccagatgtggg 1533
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134567107 cagggtgggcttagaaagcaggggctgcaagagggaatccccgaaggtgccagatgtggg 134567166

                                                         
Query: 1534      agcaggaaagtcagaaggagaacagggtgggcgagacgct 1573
                 ||||||| |||||||||||| |||||||||||||||||||
Sbjct: 134567167 agcaggagagtcagaaggag-acagggtgggcgagacgct 134567205



 Score =  440 bits (222), Expect = e-120
 Identities = 222/222 (100%)
 Strand = Plus / Plus

                                                                             
Query: 530       aacgattccctgatgaggcagatgcgggagctggaggaccgctttgctagtgaggccagc 589
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134563259 aacgattccctgatgaggcagatgcgggagctggaggaccgctttgctagtgaggccagc 134563318

                                                                             
Query: 590       ggctaccaggacaacatcgcacgcctggaggaggagatccgacacctcaaggatgagatg 649
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134563319 ggctaccaggacaacatcgcacgcctggaggaggagatccgacacctcaaggatgagatg 134563378

                                                                             
Query: 650       gcccgccacctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggag 709
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134563379 gcccgccacctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggag 134563438

                                                           
Query: 710       attgccacctaccggaagctgctggagggcgaggagagccgg 751
                 ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134563439 attgccacctaccggaagctgctggagggcgaggagagccgg 134563480



 Score =  323 bits (163), Expect = 2e-85
 Identities = 166/167 (99%)
 Strand = Plus / Plus

                                                                             
Query: 240       aggagatccgagaactgcaggcccagcttcaggaacaacaggtccaggtggagatggaca 299
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562412 aggagatccgagaactgcaggcccagcttcaggaacaacaggtccaggtggagatggaca 134562471

                                                                             
Query: 300       tgtccaagccagacctcaccgccgccctcagggacatccgggctcagtacgagaccatcg 359
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562472 tgtccaagccagacctcaccgccgccctcagggacatccgggctcagtacgagaccatcg 134562531

                                                                
Query: 360       cggctaagaacatctcggaagccgaagagtggtacaagtcaaaggtg 406
                 |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 134562532 cggctaagaacatctcagaagccgaagagtggtacaagtcaaaggtg 134562578



 Score =  281 bits (142), Expect = 6e-73
 Identities = 145/146 (99%)
 Strand = Plus / Plus

                                                                             
Query: 1         gcccattccctgggcagcccccagacagtcttcttcattgccacttttgtccctaccgtc 60
                 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134561935 gcccattctctgggcagcccccagacagtcttcttcattgccacttttgtccctaccgtc 134561994

                                                                             
Query: 61        tgtccttctgtctgtctcggccaggctgcaagaggaaattcagctgaaagaagaagccga 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134561995 tgtccttctgtctgtctcggccaggctgcaagaggaaattcagctgaaagaagaagccga 134562054

                                           
Query: 121       gaacaatttggctgccttccgagcgg 146
                 ||||||||||||||||||||||||||
Sbjct: 134562055 gaacaatttggctgccttccgagcgg 134562080



 Score =  254 bits (128), Expect = 1e-64
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                             
Query: 402       aggtgtccgacctgacccaggcagccaataagaacaatgatgcactgcgccaggccaagc 461
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562740 aggtgtccgacctgacccaggcagccaataagaacaatgatgcactgcgccaggccaagc 134562799

                                                                             
Query: 462       aggagatgatggagtatcgccatcagatccagtcctacacctgcgagatcgatgccctca 521
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562800 aggagatgatggagtatcgccatcagatccagtcctacacctgcgagatcgatgccctca 134562859

                         
Query: 522       agggcact 529
                 ||||||||
Sbjct: 134562860 agggcact 134562867



 Score =  194 bits (98), Expect = 1e-46
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                             
Query: 145       ggatgtggatgcagccactctagctcgaattgacctggagcgcaggatcgaatctctcaa 204
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562201 ggatgtggatgcagccactctagctcgaattgacctggagcgcaggatcgaatctctcaa 134562260

                                                       
Query: 205       cgaggaaatcgcgttccttaagaaagtacacgaagagg 242
                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 134562261 cgaggaaatcgcgttccttaagaaagtacacgaagagg 134562298



 Score =  172 bits (87), Expect = 4e-40
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                             
Query: 793       agaaacaagccctgagcaaaggggttctgaggtccataccaagaagacagtgatgatcaa 852
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134566202 agaaacaagccctgagcaaaggggttctgaggtccataccaagaagacagtgatgatcaa 134566261

                                            
Query: 853       gaccatcgagacccgggatggggaggt 879
                 |||||||||||||||||||||||||||
Sbjct: 134566262 gaccatcgagacccgggatggggaggt 134566288



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                              
Query: 750       ggatcaacctccctatccagaccttctctgccctcaacttccgag 794
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134564651 ggatcaacctccctatccagaccttctctgccctcaacttccgag 134564695


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  139 bits (70), Expect = 6e-30
 Identities = 121/138 (87%)
 Strand = Plus / Plus

                                                                            
Query: 614      ctggaggaggagatccgacacctcaaggatgagatggcccgccacctgcgcgagtaccag 673
                |||||||||||| | || || || ||||| ||||||||  | |||||||| |||||||||
Sbjct: 15693967 ctggaggaggagctgcggcagctaaaggaagagatggcgagacacctgcgagagtaccag 15694026

                                                                            
Query: 674      gacctgctcaatgtcaagatggccctggatgtggagattgccacctaccggaagctgctg 733
                || || ||||| |||||||||||||||||  | ||||| |||||||||||||||||||||
Sbjct: 15694027 gagctcctcaacgtcaagatggccctggacatcgagatcgccacctaccggaagctgctg 15694086

                                  
Query: 734      gagggcgaggagagccgg 751
                ||||||||||||||||||
Sbjct: 15694087 gagggcgaggagagccgg 15694104



 Score =  107 bits (54), Expect = 2e-20
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                            
Query: 659      ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
                ||||| ||||||||||| ||| | ||||||||| |||||||||| |||||||| ||||||
Sbjct: 18664283 ctgcgtgagtaccaggaactgatgaatgtcaagctggccctggacgtggagatcgccacc 18664224

                                              
Query: 719      taccggaagctgctggagggcgaggagagc 748
                ||||| |||||||||||||| |||||||||
Sbjct: 18664223 taccgcaagctgctggagggagaggagagc 18664194



 Score =  101 bits (51), Expect = 1e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                            
Query: 659      ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
                ||||| || |||||||| ||| | ||||||||| ||||||||||||||||||| ||||||
Sbjct: 18571185 ctgcgtgactaccaggagctgatgaatgtcaagctggccctggatgtggagatcgccacc 18571126

                                           
Query: 719      taccggaagctgctggagggcgaggag 745
                ||||| ||||| |||||||||||||||
Sbjct: 18571125 taccgcaagctcctggagggcgaggag 18571099



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                            
Query: 659      ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
                ||||| || |||||||| ||| | || |||||| ||||  ||||||||||||||||||||
Sbjct: 18428262 ctgcgtgactaccaggagctgatgaacgtcaagctggctttggatgtggagattgccacc 18428203

                                           
Query: 719      taccggaagctgctggagggcgaggag 745
                ||||| |||||||||||||||||||||
Sbjct: 18428202 taccgcaagctgctggagggcgaggag 18428176



 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                            
Query: 659      ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
                ||||| ||||||||||| ||| | || |||||| ||||||||||  | ||||| ||||||
Sbjct: 18157338 ctgcgtgagtaccaggagctgatgaacgtcaagctggccctggacatcgagatcgccacc 18157397

                                           
Query: 719      taccggaagctgctggagggcgaggag 745
                ||||| |||||||||||||||||||||
Sbjct: 18157398 taccgcaagctgctggagggcgaggag 18157424



 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                            
Query: 659      ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
                ||||| ||||||||||| ||| | || |||||| ||||||||||  | ||||| ||||||
Sbjct: 18263481 ctgcgtgagtaccaggagctgatgaacgtcaagctggccctggacatcgagatcgccacc 18263422

                                           
Query: 719      taccggaagctgctggagggcgaggag 745
                ||||| |||||||||||||||||||||
Sbjct: 18263421 taccgcaagctgctggagggcgaggag 18263395



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 688      caagatggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 745
                |||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 18186996 caagctggccctggacgtggagattgccacctacaggaagctgctggaaggcgaggag 18187053



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 688      caagatggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 745
                |||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 18204730 caagctggccctggacgtggagattgccacctacaggaagctgctggaaggcgaggag 18204787



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 688      caagatggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 745
                |||| |||||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 18370133 caagctggccctggacgtggagatcgccacctacaggaagctgctggagggcgaggag 18370190



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                            
Query: 659      ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
                ||||||||||||||||| ||| | |   | ||| ||||||||||||||||||| ||||||
Sbjct: 18618907 ctgcgcgagtaccaggagctgatgagcttgaagctggccctggatgtggagatcgccacc 18618848

                                          
Query: 719      taccggaagctgctggagggcgagga 744
                ||||| | ||||||||||||||||||
Sbjct: 18618847 taccgcaggctgctggagggcgagga 18618822



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                            
Query: 686      gtcaagatggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 745
                |||||| |||||||||| |||||||| ||||||||||| |||||||||||| | ||||||
Sbjct: 18603865 gtcaagctggccctggacgtggagatcgccacctaccgaaagctgctggagagtgaggag 18603806

                   
Query: 746      agc 748
                |||
Sbjct: 18603805 agc 18603803



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                     
Query: 693      tggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 745
                |||||||||| |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 18385550 tggccctggacgtggagatcgccacctaccgcaagctgctagagggcgaggag 18385498



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                               
Query: 705      tggagattgccacctaccggaagctgctggagggcgaggagagccgg 751
                ||||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct: 18409742 tggagatcgccacctaccgcaagctgctggagggcgaggagtgccgg 18409696



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 693      tggccctggatgtggagattgccacctaccggaagctgctggagggcgaggagagccgg 751
                ||||||||||  | ||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct: 18442942 tggccctggacatcgagatcgccacctaccgcaagctgctggagggcgaggagtgccgg 18442884



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                               
Query: 699      tggatgtggagattgccacctaccggaagctgctggagggcgaggag 745
                |||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 18523713 tggacgtggagatcgccacctaccgcaagctgctggagggcgaggag 18523667



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 87/105 (82%)
 Strand = Plus / Plus

                                                                            
Query: 647      atggcccgccacctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtg 706
                ||||| ||||| ||||| ||||||||||| ||| | ||||||||| ||||||||||  | 
Sbjct: 18013707 atggcgcgccagctgcgtgagtaccaggagctgatgaatgtcaagttggccctggacatc 18013766

                                                             
Query: 707      gagattgccacctaccggaagctgctggagggcgaggagagccgg 751
                ||||| ||||||||| ||   ||||| || |||||||||| ||||
Sbjct: 18013767 gagatcgccacctacaggcgcctgctagaaggcgaggagatccgg 18013811



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                             
Query: 707      gagattgccacctaccggaagctgctggagggcgaggagagccgg 751
                ||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct: 18586283 gagatcgccacctaccgcaagctgctggagggcgaggagtgccgg 18586239



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                               
Query: 705      tggagattgccacctaccggaagctgctggagggcgaggagagccgg 751
                ||||||| ||||||||||| |||||||||||| |||||||| |||||
Sbjct: 18479994 tggagatcgccacctaccgcaagctgctggagagcgaggagtgccgg 18479948



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                            
Query: 329      agggacatccgggctcagtacgagaccatcgcggctaagaacatctcggaagccgaagag 388
                ||||||||||| || |||||||||| ||| ||||| |||||| |   ||| || ||||||
Sbjct: 15693495 agggacatccgcgcccagtacgagagcattgcggcgaagaaccttcaggaggcagaagag 15693554

                                  
Query: 389      tggtacaagtcaaaggtg 406
                ||||||||||| ||||||
Sbjct: 15693555 tggtacaagtccaaggtg 15693572



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                            
Query: 659      ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 718
                ||||| ||||||||||| ||  | | ||||| | ||| ||||||| | ||||| ||||| 
Sbjct: 18124037 ctgcgtgagtaccaggagctcatgattgtcaggctgggcctggattttgagatcgccact 18123978

                                              
Query: 719      taccggaagctgctggagggcgaggagagc 748
                ||||| |||||||||||| |||||||||||
Sbjct: 18123977 taccgcaagctgctggagagcgaggagagc 18123948


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  131 bits (66), Expect = 1e-27
 Identities = 105/118 (88%)
 Strand = Plus / Plus

                                                                            
Query: 634      cctcaaggatgagatggcccgccacctgcgcgagtaccaggacctgctcaatgtcaagat 693
                ||||||||| |||||||||||||||||||  ||||||||||| |||||||| || ||| |
Sbjct: 18705863 cctcaaggacgagatggcccgccacctgcaggagtaccaggagctgctcaacgttaagct 18705922

                                                                          
Query: 694      ggccctggatgtggagattgccacctaccggaagctgctggagggcgaggagagccgg 751
                |||||||||  | ||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct: 18705923 ggccctggacatcgagatcgccacctacaggaagctgctggagggcgaggagaaccgg 18705980


>Sscrofa_Chr10 
||          Length = 79102373

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                            
Query: 638      aaggatgagatggcccgccacctgcgcgagtaccaggacctgctcaatgtcaagatggcc 697
                ||||| ||||||||||| ||||| || || ||||| |||||||| |||||||||||||| 
Sbjct: 48232776 aaggaagagatggcccgtcaccttcgtgaataccaagacctgctgaatgtcaagatggct 48232835

                                                                   
Query: 698      ctggatgtggagattgccacctaccggaagctgctggagggcgaggagagc 748
                || ||  | ||||||||||||||| ||||||||||||| || || ||||||
Sbjct: 48232836 ctcgacattgagattgccacctacaggaagctgctggaaggagaagagagc 48232886


>Sscrofa_Chr14 
||          Length = 153851969

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                                
Query: 665      gagtaccaggacctgctcaatgtcaagatggc 696
                ||||||||||||||||||||||||||||||||
Sbjct: 49579373 gagtaccaggacctgctcaatgtcaagatggc 49579404


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,192,493
Number of extensions: 377
Number of successful extensions: 377
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 34
Length of query: 1656
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1634
Effective length of database: 2,808,408,574
Effective search space: 4588939609916
Effective search space used: 4588939609916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)