Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000396
(974 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus]. 288 9e-79
Alignment gi|XP_002696847.1| PREDICTED: IgM [Bos taurus]. 100 2e-21
Alignment gi|XP_002684044.1| PREDICTED: Ig heavy chain-like, partial [Bos... 100 3e-21
Alignment gi|XP_002696848.1| PREDICTED: IgM [Bos taurus]. 97 3e-20
Alignment gi|XP_002683686.1| PREDICTED: hypothetical protein [Bos taurus]. 80 3e-15
Alignment gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo... 73 4e-13
Alignment gi|XP_002694682.1| PREDICTED: hCG96018-like [Bos taurus]. 54 2e-07
Alignment gi|XP_002694688.1| PREDICTED: immunoglobulin iota chain-like, p... 50 3e-06
Alignment gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus]. 49 7e-06
Alignment gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus]. 49 7e-06
>ref|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].
Length = 487
Score = 288 bits (738), Expect(2) = 9e-79
Identities = 155/305 (50%), Positives = 195/305 (63%), Gaps = 16/305 (5%)
Frame = +2
Query: 86 WVVLFALL--QAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGL 259
W +LF L + V + +L ESG LV+P +L L+C SGF+ S Y + WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTASGFSLSSYGINWVRQAPGKAL 64
Query: 260 EWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLCFGGGS---- 427
E LA I + GG+T Y +++ R I++D S++ L ++S+ TEDTA Y C +
Sbjct: 65 ECLACI-TGGGNTAYNPALKSRLNITKDKSKSQVSLSLSSVTTEDTATYYCAKYSTDDCA 123
Query: 428 ---------FWGPGXXXXXXXXXXISPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTV 580
WG G SP IFPL+LG+++PAG VVI CLV+ FFPS PL+V
Sbjct: 124 CSSERNYIDAWGQGLLVTVSSESETSPSIFPLSLGNNDPAGQVVIGCLVQGFFPSAPLSV 183
Query: 581 TWSPSREGVIVRNFPPAQAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVPC 760
TW+ + + V VRNFP AG LYTMSSQLTLP CP Q + CQVQHLSK+S++V VPC
Sbjct: 184 TWNQNGDSVSVRNFPAVLAGSLYTMSSQLTLPASLCPKGQSVTCQVQHLSKASKTVAVPC 243
Query: 761 KVLPSDP-CPQCCKPSLSLQPPALADLLLGSNASPHCTLSGLKKSEGVSFTWQPSGGKGI 937
+ S C C+PSLS+QPPAL DLLLGSNAS CTLSGLK +EG SFTW P+GGK
Sbjct: 244 IIQDSSSCCVPNCEPSLSVQPPALEDLLLGSNASLTCTLSGLKSAEGASFTWNPTGGKTA 303
Query: 938 RQASP 952
Q SP
Sbjct: 304 VQGSP 308
Score = 24.3 bits (51), Expect(2) = 9e-79
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 943 GVPQRDSCGC 972
G P+RDSCGC
Sbjct: 306 GSPKRDSCGC 315
>ref|XP_002696847.1| PREDICTED: IgM [Bos taurus].
Length = 193
Score = 100 bits (249), Expect = 2e-21
Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 2/111 (1%)
Frame = +2
Query: 86 WVVLFALL--QAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGL 259
W +LF L + V + +L ESG LV+P +L L+C SGF+ S SV WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTVSGFSLSDNSVGWVRQAPGKAL 64
Query: 260 EWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
EWL I SGGST Y +++ R +I++DNS++ L ++S+ TEDTA Y C
Sbjct: 65 EWLGVI-YSGGSTGYNPALKSRLSITKDNSKSQVSLSLSSVTTEDTATYYC 114
>ref|XP_002684044.1| PREDICTED: Ig heavy chain-like, partial [Bos taurus].
Length = 121
Score = 100 bits (248), Expect = 3e-21
Identities = 53/111 (47%), Positives = 74/111 (66%), Gaps = 2/111 (1%)
Frame = +2
Query: 86 WVVLFALL--QAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGL 259
W +LF L + V + +L ESG LV+P +L L+C SGF+ S Y+V WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTISGFSLSSYAVGWVRQAPGKAL 64
Query: 260 EWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
EW+ I SSGGST +++ R +I++DNS++ L ++S+ TEDTA Y C
Sbjct: 65 EWVGGI-SSGGSTCLNPALKSRLSITKDNSKSQVSLSVSSVTTEDTATYYC 114
>ref|XP_002696848.1| PREDICTED: IgM [Bos taurus].
Length = 259
Score = 96.7 bits (239), Expect = 3e-20
Identities = 50/111 (45%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Frame = +2
Query: 86 WVVLFALL--QAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGL 259
W +LF L + V + +L ESG LV+P +L L+C SGF+ S V WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTVSGFSLSSNGVGWVRQAPGKAL 64
Query: 260 EWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
EW+ ID+ G TYY +++ R +I++DNS++ L ++S+ EDTA Y C
Sbjct: 65 EWVGGIDND-GDTYYNPALKSRLSITKDNSKSQVSLSVSSVTPEDTATYYC 114
>ref|XP_002683686.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 226
Score = 80.1 bits (196), Expect = 3e-15
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 4/114 (3%)
Frame = +2
Query: 86 WVVLFALLQAVQG---EEKLVESGGGLVQPGGSLRLSCVGSGFTF-SKYSVRWVRQAPGK 253
W +L L+ QG + +L ESG L++ +L L+C GSG++ S Y W+RQAPGK
Sbjct: 4 WGLLLCLVTGPQGVLSQVQLQESGPELIKSSQTLSLTCAGSGYSITSDYGRNWIRQAPGK 63
Query: 254 GLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLCF 415
GLE + + +G TYY+ S++ +I RD +N LQ++S+ TEDTA +C+
Sbjct: 64 GLEQMGCMYYNG-DTYYSPSIKSHTSICRDTPKNQFSLQLSSVPTEDTA--MCY 114
>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
Length = 235
Score = 72.8 bits (177), Expect = 4e-13
Identities = 58/196 (29%), Positives = 81/196 (41%), Gaps = 10/196 (5%)
Frame = +2
Query: 167 GGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDN 346
G + ++C GS Y V W +Q PG GL+ + Y D Y V RF+ S+
Sbjct: 34 GQRVSITCSGSSTNIGIYGVNWYQQVPGSGLKTIIYEDK-----YRPSGVPDRFSGSK-- 86
Query: 347 SQNTAYLQMNSLRTEDTARYLCFGGG-----SFWGPGXXXXXXXXXXISPKIFPLTLGSS 511
S NTA L +NSL+ ED A Y C G + +G G P + +
Sbjct: 87 SGNTATLTINSLQAEDEADYFCAAGDYSVNTAVFGGGTTLTVLGQPKSPPSVTLFPPSTE 146
Query: 512 EPAG-YVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPA----QAGGLYTMSSQLTLP 676
E G + CL+ DF+P +TV W + I RN Q+ Y SS L+L
Sbjct: 147 ELNGNKATLVCLISDFYPGS-VTVVWK-ADGSTITRNVETTRASKQSNSKYAASSYLSLT 204
Query: 677 VEQCPADQILKCQVQH 724
+ C+V H
Sbjct: 205 SSDWKSKGSYSCEVTH 220
>ref|XP_002694682.1| PREDICTED: hCG96018-like [Bos taurus].
Length = 150
Score = 53.9 bits (128), Expect = 2e-07
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 167 GGSLRLSC-VGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRD 343
G S RLSC + SG+ S YS+ W +Q G L +L S + V RF+ S+D
Sbjct: 34 GASARLSCTLSSGYNVSNYSIYWYQQKAGNPLRYLLRFKSDSDK-HQGSGVPSRFSGSKD 92
Query: 344 NSQNTAYLQMNSLRTEDTARYLC 412
S N L ++ L+ ED A Y C
Sbjct: 93 ASTNAGLLLISGLQPEDEADYYC 115
>ref|XP_002694688.1| PREDICTED: immunoglobulin iota chain-like, partial [Bos taurus].
Length = 169
Score = 50.1 bits (118), Expect = 3e-06
Identities = 33/87 (37%), Positives = 41/87 (47%)
Frame = +2
Query: 167 GGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDN 346
G + ++C GS V W +Q PG L Y G T A V RF+ SR
Sbjct: 37 GQRVSITCTGSSSNVGNGYVSWFQQIPGSAPRTLIY-----GDTSRASGVPDRFSGSR-- 89
Query: 347 SQNTAYLQMNSLRTEDTARYLCFGGGS 427
S NTA L ++SL+ ED A Y C G S
Sbjct: 90 SGNTATLTISSLQAEDEADYFCAAGDS 116
>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 48.9 bits (115), Expect = 7e-06
Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 10/229 (4%)
Frame = +2
Query: 92 VLFALLQAVQGEEKLVESGGGL-VQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWL 268
+L L +G+ ++ +S L G + ++C S +K + W +Q PGK + L
Sbjct: 10 LLLLWLPGKEGDIQVTQSPSSLSASLGDRVSITCQASQSIDTKLA--WYQQKPGKAPKLL 67
Query: 269 AYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLCFGGG---SFWGP 439
Y S + +F+ S + T L ++SL+ +D A Y C + +G
Sbjct: 68 IYAIPRSPSWF-----PSQFSGSGFGADFT--LTISSLKADDIATYYCLSRNCCVNTFGQ 120
Query: 440 GXXXXXXXXXXISPKIFPLTLGSSE-PAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVR 616
G P +F + G V + CLV DF+P + + V W
Sbjct: 121 GTKVEIKRSDA-EPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKD-INVKWKVDGVTQSSS 178
Query: 617 NFPPA-----QAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSV 748
NF + Y++SS LTLP + + C+V H S ++ V
Sbjct: 179 NFQNSFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLV 227
>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 48.9 bits (115), Expect = 7e-06
Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 10/229 (4%)
Frame = +2
Query: 92 VLFALLQAVQGEEKLVESGGGL-VQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWL 268
+L L +G+ ++ +S L G + ++C S +K + W +Q PGK + L
Sbjct: 10 LLLLWLPGKEGDIQVTQSPSSLSASLGDRVSITCQASQSIDTKLA--WYQQKPGKAPKLL 67
Query: 269 AYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLCFGGG---SFWGP 439
Y S + +F+ S + T L ++SL+ +D A Y C + +G
Sbjct: 68 IYAIPRSPSWF-----PSQFSGSGFGADFT--LTISSLKADDIATYYCLSRNCCVNTFGQ 120
Query: 440 GXXXXXXXXXXISPKIFPLTLGSSE-PAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVR 616
G P +F + G V + CLV DF+P + + V W
Sbjct: 121 GTKVEIKRSDA-EPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKD-INVKWKVDGVTQSSS 178
Query: 617 NFPPA-----QAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSV 748
NF + Y++SS LTLP + + C+V H S ++ V
Sbjct: 179 NFQNSFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLV 227
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,998,845
Number of extensions: 1684257
Number of successful extensions: 8707
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 8538
Number of HSP's successfully gapped: 11
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000396
(974 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III regi... 184 1e-46
Alignment gi|XP_848432.1| PREDICTED: similar to Ig heavy chain V-III regi... 180 2e-45
Alignment gi|XP_848935.1| PREDICTED: similar to Ig heavy chain V-III regi... 179 5e-45
Alignment gi|XP_848877.1| PREDICTED: similar to Ig heavy chain V-III regi... 178 8e-45
Alignment gi|XP_848616.1| PREDICTED: similar to Ig heavy chain V-III regi... 178 8e-45
Alignment gi|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III regi... 176 2e-44
Alignment gi|XP_848796.1| PREDICTED: similar to Ig heavy chain V-III regi... 176 2e-44
Alignment gi|XP_848599.1| PREDICTED: similar to Ig heavy chain V-III regi... 176 4e-44
Alignment gi|XP_848486.1| PREDICTED: similar to Ig heavy chain V-III regi... 173 3e-43
Alignment gi|XP_849354.1| PREDICTED: similar to Ig heavy chain V-III regi... 172 6e-43
>ref|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 142
Score = 184 bits (467), Expect = 1e-46
Identities = 93/139 (66%), Positives = 110/139 (79%), Gaps = 5/139 (3%)
Frame = +2
Query: 35 SVIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFS 214
S IR E+R ME + WV L A+L+ VQGE +LVESGG LV+PGGSLRLSCV SGFTFS
Sbjct: 3 SGIRVENRRLNMESFVGWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFS 62
Query: 215 KYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTED 394
Y++ WVRQAPGKGL+W+AYI+S G STYYAD+V+GRFTISRDN++NT YLQMNSLR+ED
Sbjct: 63 SYAMSWVRQAPGKGLQWVAYINSGGSSTYYADAVKGRFTISRDNARNTLYLQMNSLRSED 122
Query: 395 TARYLC-----FGGGSFWG 436
TA Y C F GS+ G
Sbjct: 123 TAVYYCPKDTVFSPGSYLG 141
>ref|XP_848432.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 267
Score = 180 bits (457), Expect = 2e-45
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = +2
Query: 50 EHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVR 229
EHR ME L+WV L +L+ VQGE +LVESGG LV+PGGSLRLSCV SGFTFS Y +
Sbjct: 104 EHRQRTMESALSWVFLVTILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSYHMS 163
Query: 230 WVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYL 409
WVRQAPGKGL+W+AYI+S G ST YAD+V+GRFTISRDN++NT YLQMNSLR EDTA Y
Sbjct: 164 WVRQAPGKGLQWVAYINSGGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYY 223
Query: 410 CFGG 421
C G
Sbjct: 224 CAKG 227
>ref|XP_848935.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 315
Score = 179 bits (453), Expect = 5e-45
Identities = 87/126 (69%), Positives = 98/126 (77%)
Frame = +2
Query: 35 SVIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFS 214
SVIR +HR ME L WV L A+LQ VQGE +LVESGG L +PGGSLRLSCV SG TFS
Sbjct: 156 SVIRTQHRQITMESVLGWVFLVAILQGVQGEVQLVESGGDLAKPGGSLRLSCVASGLTFS 215
Query: 215 KYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTED 394
YS+ WVRQAPGKGL+W+ I G STYY D+V+GRFTISRDN++NT YLQMNSLR ED
Sbjct: 216 SYSMSWVRQAPGKGLQWVTAISYDGSSTYYTDAVKGRFTISRDNARNTVYLQMNSLRAED 275
Query: 395 TARYLC 412
TA Y C
Sbjct: 276 TAVYYC 281
>ref|XP_848877.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 250
Score = 178 bits (451), Expect = 8e-45
Identities = 86/125 (68%), Positives = 99/125 (79%)
Frame = +2
Query: 38 VIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSK 217
+IR + R ME L+WV L A+LQ VQGE +LVESGG LV+PGGSLRLSCV SGFTFS
Sbjct: 108 LIRTQQRQTTMESVLSWVFLVAILQGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSN 167
Query: 218 YSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDT 397
Y + WVRQAPGKGL+W+A I G STYY D+V+GRFTISRDN++NT YLQMNSLR EDT
Sbjct: 168 YDMSWVRQAPGKGLQWVAAISYDGSSTYYTDAVKGRFTISRDNARNTVYLQMNSLRAEDT 227
Query: 398 ARYLC 412
A Y C
Sbjct: 228 AVYYC 232
Score = 133 bits (335), Expect(2) = 2e-31
Identities = 63/89 (70%), Positives = 73/89 (82%)
Frame = +2
Query: 146 GGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGR 325
G LV+PGGSLRLSCV SGFTFS+Y++ WV QAPGKGL+W+A I SSG STYY D+V+GR
Sbjct: 10 GEDLVKPGGSLRLSCVTSGFTFSRYAMSWVGQAPGKGLQWVAAISSSGSSTYYVDAVKGR 69
Query: 326 FTISRDNSQNTAYLQMNSLRTEDTARYLC 412
FTIS DN++N YLQMNSLR ED A Y C
Sbjct: 70 FTISIDNAKNMVYLQMNSLRAEDIAVYYC 98
Score = 21.6 bits (44), Expect(2) = 2e-31
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 123 VRRSWWSLEEAWCSLGG 173
V+ SWWSL E GG
Sbjct: 2 VKCSWWSLGEDLVKPGG 18
>ref|XP_848616.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 186
Score = 178 bits (451), Expect = 8e-45
Identities = 89/130 (68%), Positives = 102/130 (78%)
Frame = +2
Query: 38 VIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSK 217
VIR +HR ME L+WV L A+LQ VQGE +LVESGG LV+P GSLRLSCV SGFTFS
Sbjct: 22 VIRTQHRQITMESVLSWVFLVAILQGVQGEVQLVESGGDLVKPAGSLRLSCVASGFTFSS 81
Query: 218 YSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDT 397
YS+ WVRQAP KGL+ +A I+S G STYY D+V+GRFTISRDN++NT YLQMNSLR EDT
Sbjct: 82 YSMSWVRQAPEKGLQLVAGINSGGSSTYYTDAVKGRFTISRDNAKNTVYLQMNSLRAEDT 141
Query: 398 ARYLCFGGGS 427
A Y C GS
Sbjct: 142 AMYYCAEAGS 151
>ref|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 162
Score = 176 bits (447), Expect = 2e-44
Identities = 86/124 (69%), Positives = 101/124 (81%)
Frame = +2
Query: 41 IRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKY 220
IR E+R M+ L WV L A+L+ VQGE +LVESGG LV+PGGSLRLSCV SGFTFS Y
Sbjct: 4 IRTEYRQLTMKLVLGWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSY 63
Query: 221 SVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTA 400
++ WVRQAPGKGL+W+A+I SG ST YAD+V+GRFTISRDN++NT YLQMNSLR EDTA
Sbjct: 64 NMGWVRQAPGKGLQWVAWIYDSGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTA 123
Query: 401 RYLC 412
Y C
Sbjct: 124 VYYC 127
>ref|XP_848796.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 244
Score = 176 bits (447), Expect = 2e-44
Identities = 85/123 (69%), Positives = 98/123 (79%)
Frame = +2
Query: 44 RKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYS 223
+ EH+ ME L WV L A+L+ VQ E +LVESGG LV+P GSLRLSCV SGFTFS Y
Sbjct: 70 KTEHKQLTMESVLCWVFLVAILKGVQSEVQLVESGGDLVKPVGSLRLSCVASGFTFSSYD 129
Query: 224 VRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTAR 403
+ WVRQAPGKGL+W+AYI S G STYYAD+V+GRFTISRDN++NT YLQMNSLR EDTA
Sbjct: 130 MNWVRQAPGKGLQWVAYISSGGSSTYYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAM 189
Query: 404 YLC 412
Y C
Sbjct: 190 YYC 192
>ref|XP_848599.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 201
Score = 176 bits (445), Expect = 4e-44
Identities = 88/133 (66%), Positives = 101/133 (75%)
Frame = +2
Query: 41 IRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKY 220
IR+E R ME L+WV L +L+ VQ E +LVESGG LV+P GSLRLSCV SGFTFS Y
Sbjct: 40 IRRELRKLTMESVLSWVFLVTILKGVQCEVQLVESGGDLVKPEGSLRLSCVVSGFTFSSY 99
Query: 221 SVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTA 400
+ WVRQAPGKGL+W+AYI S G ST Y D+V+GRFTISRDN++NT YLQMNSLRTEDTA
Sbjct: 100 DMSWVRQAPGKGLQWVAYISSDGRSTSYTDAVKGRFTISRDNAKNTLYLQMNSLRTEDTA 159
Query: 401 RYLCFGGGSFWGP 439
Y C G W P
Sbjct: 160 VYYCAAGSLGWFP 172
>ref|XP_848486.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 239
Score = 173 bits (438), Expect = 3e-43
Identities = 86/126 (68%), Positives = 100/126 (79%)
Frame = +2
Query: 35 SVIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFS 214
S I EHR M L+WV L A+++ VQGE +LVESGG LV+PGGSLRLSCV SGFTFS
Sbjct: 57 SGIWTEHRQLTMTSVLSWVFLAAIVKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFS 116
Query: 215 KYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTED 394
Y + WVRQAPGKGLEW+A I SG +TYYA++V+GRFTISRDN++N AYLQMNSLR ED
Sbjct: 117 NYEMYWVRQAPGKGLEWVARIYESGSTTYYAEAVKGRFTISRDNAKNMAYLQMNSLRAED 176
Query: 395 TARYLC 412
TA Y C
Sbjct: 177 TAVYYC 182
>ref|XP_849354.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 350
Score = 172 bits (435), Expect = 6e-43
Identities = 83/125 (66%), Positives = 100/125 (80%)
Frame = +2
Query: 38 VIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSK 217
+IR + + +ME L WV L A+L+ VQGE +LVE GG LV+PGGSLRLSCV SGFTFS
Sbjct: 132 LIRTQRKQTSMESVLGWVFLVAILKGVQGELQLVELGGDLVKPGGSLRLSCVASGFTFSS 191
Query: 218 YSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDT 397
Y++ WV QAPGKGL+W+A I SSG STY+ D+V+GRFTISRDN++NT YLQMNSLR EDT
Sbjct: 192 YAMSWVCQAPGKGLQWVAAISSSGSSTYHVDAVKGRFTISRDNAKNTVYLQMNSLRAEDT 251
Query: 398 ARYLC 412
A Y C
Sbjct: 252 AVYYC 256
Score = 153 bits (387), Expect = 2e-37
Identities = 75/115 (65%), Positives = 89/115 (77%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
ME L+ V L A+L+ VQGE LVESGG LV+P GSLR SCV SGFTFS Y + WVRQAP
Sbjct: 1 MESALHRVSLVAILKGVQGEVPLVESGGELVKPEGSLRFSCVASGFTFSSYWISWVRQAP 60
Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
GKGL W++ I+ G +TY+AD+V+GRFTISRDN++NT YLQMNSLR E T Y C
Sbjct: 61 GKGLHWVSVINKDGSTTYHADAVKGRFTISRDNAKNTLYLQMNSLRAEGTTVYYC 115
Score = 107 bits (267), Expect = 2e-23
Identities = 51/72 (70%), Positives = 59/72 (81%)
Frame = +2
Query: 116 VQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGS 295
VQGE +LVESGG LV+P G LRLSCV SGFTFS Y + WVRQAPGK L+W+AYI+S G S
Sbjct: 266 VQGEVQLVESGGDLVKPCGLLRLSCVASGFTFSSYIMSWVRQAPGKWLQWVAYINSGGSS 325
Query: 296 TYYADSVEGRFT 331
T Y D+V+GRFT
Sbjct: 326 TRYTDAVKGRFT 337
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,113,985
Number of extensions: 1732598
Number of successful extensions: 8844
Number of sequences better than 1.0e-05: 118
Number of HSP's gapped: 8646
Number of HSP's successfully gapped: 129
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000396
(974 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-... 176 2e-44
Alignment gi|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084... 172 3e-43
Alignment gi|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-... 171 9e-43
Alignment gi|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941... 169 4e-42
Alignment gi|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-... 169 4e-42
Alignment gi|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-... 169 5e-42
Alignment gi|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-... 168 6e-42
Alignment gi|XP_003119639.1| PREDICTED: hypothetical protein LOC100508797... 162 3e-40
Alignment gi|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917... 161 1e-39
Alignment gi|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-... 156 3e-38
>ref|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 231
Score = 176 bits (447), Expect = 2e-44
Identities = 86/115 (74%), Positives = 100/115 (86%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
MEF L+WV+L A+L+ VQ E +LVESGGGLVQPGGSLRLSC SGFTFS Y++ WVRQAP
Sbjct: 1 MEFWLSWVLLVAILKDVQCEVQLVESGGGLVQPGGSLRLSCSASGFTFSSYAMHWVRQAP 60
Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
GKGLE+++ I S+GGSTYYADSV+GRFTISRDNS+NT YLQM+SLR EDTA Y C
Sbjct: 61 GKGLEYVSAISSNGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYC 115
>ref|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084 [Homo sapiens].
Length = 279
Score = 172 bits (437), Expect = 3e-43
Identities = 83/115 (72%), Positives = 95/115 (82%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
MEF L+WV L A+L+ VQ E +LVESGG +VQPGGSLRLSC SGFTF Y++ WVRQAP
Sbjct: 1 MEFGLSWVFLVAILKGVQCEVQLVESGGVVVQPGGSLRLSCAASGFTFDDYAMHWVRQAP 60
Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
GKGLEW++ I GGSTYYADSV+GRFTISRDNS+N+ YLQMNSLR EDTA Y C
Sbjct: 61 GKGLEWVSLISWDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRAEDTALYYC 115
Score = 89.0 bits (219), Expect = 6e-18
Identities = 48/92 (52%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Frame = +2
Query: 164 PGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGS--TYYADSVEGRFTIS 337
PG S + SGFTFS + + W+RQA GKGLEW+ I + S T A SV+GRFTIS
Sbjct: 123 PGESWQGEGYSSGFTFSDFWMHWIRQASGKGLEWVGRIRTKRNSYTTECAASVKGRFTIS 182
Query: 338 RDNSQNTAYLQMNSLRTEDTARYLCFGGGSFW 433
RD+S+NT Y+QMN+L+T+ TA Y G G W
Sbjct: 183 RDDSKNTLYMQMNTLKTKYTAIYYSPGQGLEW 214
Score = 57.4 bits (137), Expect = 2e-08
Identities = 28/65 (43%), Positives = 41/65 (63%)
Frame = +2
Query: 212 SKYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTE 391
+KY+ + +PG+GLEW+ +I + G+ Y GRF S D S + AYLQ++SL+ E
Sbjct: 199 TKYTA--IYYSPGQGLEWMGWIITYTGNPMYTHGFTGRFVFSMDTSVSMAYLQISSLKAE 256
Query: 392 DTARY 406
DTA Y
Sbjct: 257 DTAVY 261
>ref|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 147
Score = 171 bits (433), Expect = 9e-43
Identities = 83/115 (72%), Positives = 97/115 (84%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
MEF L+WV L A+L+ VQ E +LV+SGGGLVQPGGSLRLSC GSGFTFS Y++ WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVQPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
GKGLEW++ I +GG TYYADSV+GRFTISRDN++N+ YLQMNSLR ED A Y C
Sbjct: 61 GKGLEWVSAI-GTGGGTYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYC 114
>ref|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941 [Homo sapiens].
Length = 297
Score = 169 bits (428), Expect = 4e-42
Identities = 82/115 (71%), Positives = 96/115 (83%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
MEF L+WV L A+L+ VQ E +LV+SGGGLV PGGSLRLSC GSGFTFS Y++ WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVHPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
GKGLEW++ I +GG TYYADSV+GRFTISRDN++N+ YLQMNSLR ED A Y C
Sbjct: 61 GKGLEWVSAI-GTGGGTYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYC 114
>ref|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 147
Score = 169 bits (428), Expect = 4e-42
Identities = 82/115 (71%), Positives = 96/115 (83%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
MEF L+WV L A+L+ VQ E +LV+SGGGLV PGGSLRLSC GSGFTFS Y++ WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVHPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
GKGLEW++ I +GG TYYADSV+GRFTISRDN++N+ YLQMNSLR ED A Y C
Sbjct: 61 GKGLEWVSAI-GTGGGTYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYC 114
>ref|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 186
Score = 169 bits (427), Expect = 5e-42
Identities = 80/115 (69%), Positives = 95/115 (82%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
MEF L+WV L A+++ VQ + +LVESGGGLV+PGGSLRLSC SGFTFS Y + W+RQAP
Sbjct: 1 MEFGLSWVFLVAIIKGVQCQVQLVESGGGLVKPGGSLRLSCAASGFTFSDYYMSWIRQAP 60
Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
GKGLEW++YI SS T YADSV+GRFTISRDN++N+ YLQMNSLR EDTA Y C
Sbjct: 61 GKGLEWVSYISSSSSYTNYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC 115
>ref|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 173
Score = 168 bits (426), Expect = 6e-42
Identities = 82/115 (71%), Positives = 92/115 (80%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
MEF L+WV L ALL+ VQ + +LVESGGG+VQPG SLRLSC SGFTFS Y + WVRQAP
Sbjct: 1 MEFGLSWVFLVALLRGVQCQVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAP 60
Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
GKGLEW+A I G + YYADSV+GRFTISRDNS+NT YLQMNSLR DTA Y C
Sbjct: 61 GKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAGDTAVYYC 115
>ref|XP_003119639.1| PREDICTED: hypothetical protein LOC100508797 [Homo sapiens].
Length = 309
Score = 162 bits (411), Expect = 3e-40
Identities = 86/138 (62%), Positives = 100/138 (72%), Gaps = 4/138 (2%)
Frame = +2
Query: 11 RSPAPGS----RSVIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSL 178
RSP+ G SVIR EH EF L+WV L A+L+ VQ E++LVESGGGLVQPGGSL
Sbjct: 108 RSPSLGIPKCLHSVIRTEHTGLTREFVLSWVFLVAILKCVQCEDQLVESGGGLVQPGGSL 167
Query: 179 RLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNT 358
R SC SGF FS Y + WVR+APGKG EW++ I +GG TYYADSV GRFTISRDN++ +
Sbjct: 168 RPSCAASGFAFSSYVLHWVRRAPGKGPEWVSAI-GTGGDTYYADSVMGRFTISRDNAKKS 226
Query: 359 AYLQMNSLRTEDTARYLC 412
YLQMNSL ED A Y C
Sbjct: 227 LYLQMNSLIAEDMAVYYC 244
>ref|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917 [Homo sapiens].
Length = 295
Score = 161 bits (407), Expect = 1e-39
Identities = 80/124 (64%), Positives = 96/124 (77%)
Frame = +2
Query: 41 IRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKY 220
+ K + E L+W+ L A+L+ VQ E +LVESGGGLV+PGGSLRLSC SGFTFS Y
Sbjct: 13 LHKSEKRTTKESWLSWLFLVAILKGVQCEVQLVESGGGLVKPGGSLRLSCAASGFTFSDY 72
Query: 221 SVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTA 400
+ WVRQAPGKGLEW++ I SS + YYADSV+GRFTISRDN++N+ YLQMNSLR EDTA
Sbjct: 73 YMNWVRQAPGKGLEWVSSI-SSSSTIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTA 131
Query: 401 RYLC 412
Y C
Sbjct: 132 VYYC 135
Score = 80.9 bits (198), Expect = 2e-15
Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Frame = +2
Query: 116 VQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVR--WVRQAPGKGLEWLAYIDSSG 289
V + L ESG LV+P +L L+C SGF+ S +R W+RQ PGK LEWLA ID
Sbjct: 164 VLSQVTLKESGPALVKPTQTLTLTCTFSGFSLSTSGMRVSWIRQPPGKALEWLARIDWDD 223
Query: 290 GSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
+Y+ S++ R TIS+D S+N L M ++ DTA Y C
Sbjct: 224 DK-FYSTSLKTRLTISKDTSKNQVVLTMTNMDPVDTATYYC 263
>ref|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 148
Score = 156 bits (394), Expect = 3e-38
Identities = 77/115 (66%), Positives = 88/115 (76%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
MEF L+WV L A+LQ V E +LVESG GL QPGG L+LS SGFT + + W+ QAP
Sbjct: 1 MEFELSWVFLVAILQGVHCEVQLVESGRGLAQPGGYLKLSGAASGFTVGSWYMSWIHQAP 60
Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
GKGLEW++YI SSG ST YADSV+GRFTIS DNS+NT YLQMNSLR EDTA Y C
Sbjct: 61 GKGLEWVSYISSSGCSTNYADSVKGRFTISTDNSKNTLYLQMNSLRVEDTAVYYC 115
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,976,781
Number of extensions: 1694119
Number of successful extensions: 8805
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 8660
Number of HSP's successfully gapped: 21
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000396
(974 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mu... 161 8e-40
Alignment gi|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1... 154 8e-38
Alignment gi|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musc... 154 8e-38
Alignment gi|XP_923669.1| PREDICTED: putative V-set and immunoglobulin do... 107 1e-23
Alignment gi|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361... 107 1e-23
Alignment gi|XP_003086829.1| PREDICTED: similar to immunoglobulin mu-chai... 102 4e-22
Alignment gi|XP_003086828.1| PREDICTED: hypothetical protein LOC100505002... 98 1e-20
Alignment gi|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292... 92 6e-19
>ref|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mus musculus].
Length = 349
Score = 161 bits (407), Expect = 8e-40
Identities = 83/155 (53%), Positives = 104/155 (67%), Gaps = 3/155 (1%)
Frame = +2
Query: 476 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 652
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 10 NPTIYPLTLPRALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGGYT 69
Query: 653 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVPCK--VLPSDPCPQCCKPSLSLQPPA 826
MSSQLTLP +CP + +KC VQH S + Q +NV C P+ P P C+PSLSLQ PA
Sbjct: 70 MSSQLTLPAVECPEGESVKCSVQHDSNAVQELNVKCSGPPPPTTPPPPSCQPSLSLQRPA 129
Query: 827 LADLLLGSNASPHCTLSGLKKSEGVSFTWQPSGGK 931
L DLLLGS+AS CTL+GL+ EG FTW+PS GK
Sbjct: 130 LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGK 164
>ref|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].
Length = 354
Score = 154 bits (390), Expect = 8e-38
Identities = 82/156 (52%), Positives = 103/156 (66%), Gaps = 4/156 (2%)
Frame = +2
Query: 476 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 652
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 15 NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 74
Query: 653 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVPCKVLPSDPCP---QCCKPSLSLQPP 823
MSSQLTLP +CP + +KC VQH S Q ++V C P+ P P C+PSLSLQ P
Sbjct: 75 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSG-PTPPPPITIPSCQPSLSLQRP 133
Query: 824 ALADLLLGSNASPHCTLSGLKKSEGVSFTWQPSGGK 931
AL DLLLGS+AS CTL+GL+ EG FTW+PS GK
Sbjct: 134 ALEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGK 169
>ref|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musculus].
Length = 413
Score = 154 bits (390), Expect = 8e-38
Identities = 82/156 (52%), Positives = 103/156 (66%), Gaps = 4/156 (2%)
Frame = +2
Query: 476 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 652
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 74 NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 133
Query: 653 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVPCKVLPSDPCP---QCCKPSLSLQPP 823
MSSQLTLP +CP + +KC VQH S Q ++V C P+ P P C+PSLSLQ P
Sbjct: 134 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSG-PTPPPPITIPSCQPSLSLQRP 192
Query: 824 ALADLLLGSNASPHCTLSGLKKSEGVSFTWQPSGGK 931
AL DLLLGS+AS CTL+GL+ EG FTW+PS GK
Sbjct: 193 ALEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGK 228
Score = 99.0 bits (245), Expect = 5e-21
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
M+ LNWV L LL +Q E KLVESGGGLVQPGGSLRLSC SGFTFS + + WVRQ P
Sbjct: 1 MKLWLNWVFLLTLLHGIQCEVKLVESGGGLVQPGGSLRLSCATSGFTFSDFYMEWVRQPP 60
Query: 248 GKGLEWLA 271
GK LEW+A
Sbjct: 61 GKRLEWIA 68
>ref|XP_923669.1| PREDICTED: putative V-set and immunoglobulin domain-containing
protein 6-like [Mus musculus].
Length = 208
Score = 107 bits (268), Expect = 1e-23
Identities = 54/109 (49%), Positives = 73/109 (66%)
Frame = +2
Query: 86 WVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEW 265
++ L A V + +L ESG GLV P SL ++C SGF+ + Y V WVRQ PGKGLEW
Sbjct: 7 FLCLVAFPSCVLSQVQLKESGPGLVAPSQSLSITCTVSGFSLTSYGVHWVRQPPGKGLEW 66
Query: 266 LAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
L I +GGST Y ++ R +IS+DNS++ +L+MNSL+T+DTA Y C
Sbjct: 67 LGVI-WAGGSTNYNSALMSRLSISKDNSKSQVFLKMNSLQTDDTAMYYC 114
>ref|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361 [Mus musculus].
Length = 411
Score = 107 bits (267), Expect = 1e-23
Identities = 53/103 (51%), Positives = 71/103 (68%)
Frame = +2
Query: 104 LLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDS 283
LL + + +L ESG GLV P SL ++C SGF+ + Y V WVRQ PGKGLEWL I
Sbjct: 253 LLPGILSQVQLKESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMI-W 311
Query: 284 SGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
GST Y +++ R +IS+DNS++ +L+MNSL+T+DTARY C
Sbjct: 312 GDGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTDDTARYYC 354
Score = 87.4 bits (215), Expect = 1e-17
Identities = 44/94 (46%), Positives = 62/94 (65%)
Frame = +2
Query: 116 VQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGS 295
V + ++ ESG LVQP +L L+C SGF+ S Y V W R+ P KGLEWL I SGGS
Sbjct: 17 VLSQVQMKESGPDLVQPSQTLSLTCTVSGFSLSSYGVHWFRKPPRKGLEWLGGI-WSGGS 75
Query: 296 TYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDT 397
YY ++ R ++SRD S++ + +M+SL++EDT
Sbjct: 76 IYYNPALSSRLSVSRDISKSQVFFKMSSLQSEDT 109
>ref|XP_003086829.1| PREDICTED: similar to immunoglobulin mu-chain-like [Mus musculus].
Length = 124
Score = 102 bits (254), Expect = 4e-22
Identities = 47/112 (41%), Positives = 73/112 (65%), Gaps = 2/112 (1%)
Frame = +2
Query: 83 NWVVLFAL--LQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKG 256
+W+ LF L V E +L +SG LV+PG S+++SC SG+TF+ Y + WV+Q+ GK
Sbjct: 4 SWIFLFLLSGTAGVLSEVQLHQSGPELVKPGASVKMSCKASGYTFTNYYMHWVKQSHGKS 63
Query: 257 LEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
+EW+ YI + G T Y +G+ T++ D S +TAY+++ SL +ED+A Y C
Sbjct: 64 IEWIGYIYPNNGDTSYNQKFKGKATLTVDKSSSTAYMELRSLTSEDSAVYYC 115
>ref|XP_003086828.1| PREDICTED: hypothetical protein LOC100505002 [Mus musculus].
Length = 302
Score = 97.8 bits (242), Expect = 1e-20
Identities = 45/112 (40%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
Frame = +2
Query: 83 NWVVLFAL--LQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKG 256
+W+ LF L V E +L +SG L++PG S+++SC SG+TF+ Y++ WV+Q+ GK
Sbjct: 4 SWIFLFLLSGTAGVLSEVQLQQSGPELLKPGASVKISCKASGYTFTDYTMHWVKQSHGKS 63
Query: 257 LEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
LEW+ I+ + G T Y + + + T++ D S +TAY+++ SL +ED+A Y C
Sbjct: 64 LEWIGGINPNYGGTSYNEKFKDKATLTVDKSSSTAYMELRSLTSEDSAVYYC 115
Score = 74.3 bits (181), Expect = 1e-13
Identities = 36/99 (36%), Positives = 62/99 (62%)
Frame = +2
Query: 116 VQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGS 295
V E L +S +V+ G S+++SC SG++F+ Y + WV+Q+ GK L+ + YI+ G
Sbjct: 180 VHSEVHLQQSLPKVVKAGPSVKISCKASGYSFTGYYMHWVKQSHGKILQRVEYINPYNGG 239
Query: 296 TYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
T Y + + + T++ D S +TAY+ ++SL +ED+ Y C
Sbjct: 240 TGYIEKFKDKATLTADKSFSTAYMHLSSLTSEDSEVYSC 278
Score = 62.8 bits (151), Expect = 4e-10
Identities = 27/70 (38%), Positives = 44/70 (62%)
Frame = +2
Query: 92 VLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLA 271
V + +V E +L +SG LV+PG S+++SC SG++F+ Y + WV+Q+ GK LEW+
Sbjct: 112 VYYCARHSVNSEVQLQQSGPELVKPGASVKISCKASGYSFTGYYMHWVKQSHGKSLEWIG 171
Query: 272 YIDSSGGSTY 301
I+ G +
Sbjct: 172 EINPYNGGVH 181
>ref|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292 [Mus musculus].
Length = 419
Score = 92.0 bits (227), Expect = 6e-19
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Frame = +2
Query: 104 LLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDS 283
LL + +L +SG LV+PG S+++SC SG+TF+ Y + WV+Q PG+GLEW+ ID
Sbjct: 4 LLAGFNSQVQLQQSGAELVRPGASVKMSCKASGYTFTSYWMHWVKQRPGQGLEWIGAIDP 63
Query: 284 SGGSTYYADSVE---GRFTISRDNSQNTAYLQMNSLRTEDTARYLCF 415
S T Y + + T++ D S + AY+Q +SL +ED+ Y C+
Sbjct: 64 SDSETIYNQKFKDSRDKATLTVDKSSSIAYMQFSSLTSEDSVVYYCY 110
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,079,915
Number of extensions: 1395404
Number of successful extensions: 6746
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6620
Number of HSP's successfully gapped: 12
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000396
(974 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998993.1| IgG heavy chain [Sus scrofa]. 252 3e-67
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 65 6e-11
>ref|NP_998993.1| IgG heavy chain [Sus scrofa].
Length = 474
Score = 252 bits (643), Expect = 3e-67
Identities = 151/309 (48%), Positives = 183/309 (59%), Gaps = 23/309 (7%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
MEFRLNWVVLFALLQ VQGEEKLVESGGGLVQPGGSL+LSCV SGF FSKY V WVR P
Sbjct: 1 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLKLSCVASGFIFSKYIVNWVRLVP 60
Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC----- 412
GKGLEWLA I S+ GST+YADSV+GRFTISRDNSQNTAYLQMNSLRTEDTA Y C
Sbjct: 61 GKGLEWLASIWST-GSTHYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTALYYCAREVC 119
Query: 413 ----------FGGGSFWGPGXXXXXXXXXXISPKIFPLTLGSSEPAG-YVVIACLVRDFF 559
+ G WGPG +P ++PL + +G V + CL +F
Sbjct: 120 FRYNTGCWDGYYGMDLWGPGVEVVVSSAPKTAPSVYPLAPCGRDTSGPNVALGCLASSYF 179
Query: 560 PSEPLTVTWSPSREGVIVRNFPPA-QAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKS 736
P EP+T+TW+ V FP Q GLY++SS +T+P + + C V H + +
Sbjct: 180 P-EPVTMTWNSGALTSGVHTFPSVLQPSGLYSLSSMVTVPASSL-SSKSYTCNVNHPATT 237
Query: 737 SQ-SVNVPCKVLPSDP-CPQC--CKPSLSLQPPALAD-LLLGSNASPHCTLSGLKKSEG- 898
++ V K P P CP C PS+ + PP D L++ C + + K
Sbjct: 238 TKVDKRVGTKTKPPCPICPGCEVAGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHAE 297
Query: 899 VSFTWQPSG 925
V F+W G
Sbjct: 298 VQFSWYVDG 306
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 65.1 bits (157), Expect = 6e-11
Identities = 61/222 (27%), Positives = 87/222 (39%), Gaps = 12/222 (5%)
Frame = +2
Query: 95 LFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAY 274
L +L +L + G V GG+ ++C G F Y W +Q PG+ + Y
Sbjct: 10 LLSLCTGYVASSQLTQPPGVSVSLGGTASITCQGGNF--GSYYAHWYKQKPGQSPMLVIY 67
Query: 275 IDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC-----FGGGSFWGP 439
+ S + RF+ S+ S NTA L ++ + ED A Y C G +G
Sbjct: 68 EYNKRAS-----GIPDRFSGSK--SGNTATLTISGAQAEDEADYYCQSSDDSDAGPLFGR 120
Query: 440 GXXXXXXXXXXISP--KIFPLTLGSSEPAG--YVVIACLVRDFFPSEPLTVTWSPSREGV 607
G +P +FP SSE G + CL+ DF+P +TVTW V
Sbjct: 121 GTRLSVLRQPKAAPTVNLFP---PSSEELGTNKATLVCLISDFYPG-AVTVTWKAGGTTV 176
Query: 608 ---IVRNFPPAQAGGLYTMSSQLTLPVEQCPADQILKCQVQH 724
+ P Q+ Y SS L L + CQV H
Sbjct: 177 TQGVETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTH 218
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,080,030
Number of extensions: 1092600
Number of successful extensions: 5583
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5515
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000396
(974 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 587 e-165
gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 276 2e-71
>gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffold764
Length = 7672
Score = 587 bits (296), Expect = e-165
Identities = 302/304 (99%)
Strand = Plus / Plus
Query: 461 tcagtgtctgaaatcagccccaaaatcttcccactgactctggggagcagcgagcctgcc 520
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 tcagtgtctgaaaccagccccaaaatcttcccactgactctggggagcagcgagcctgcc 1944
Query: 521 ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 2004
Query: 581 acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 2064
Query: 641 ggcctgtacaccatgagcagccagctgaccttgccagtcgagcagtgcccagccgatcag 700
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2065 ggcctgtacaccatgagcagccaggtgaccttgccagtcgagcagtgcccagccgatcag 2124
Query: 701 atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 2184
Query: 761 aaag 764
||||
Sbjct: 2185 aaag 2188
Score = 321 bits (162), Expect = 4e-85
Identities = 204/214 (95%), Gaps = 3/214 (1%)
Strand = Plus / Plus
Query: 763 agttttaccttcagatccatgtccccagtgctgcaagcccagcctgtccctgcagccacc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2334 agttttaccttcagatccatgtccccagtgctgcaagcccagcctgtccctgcagccacc 2393
Query: 823 agcccttgcagacctgctcctgggctccaatgccagcccccactgcacactcagtggcct 882
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 2394 agcccttgcagacctgctcctgggctccaatgccagcctcacctgcacactcagtggcct 2453
Query: 883 gaaaaaatccgaaggtgtcagcttcacctggcagccctcaggtgggaaaggaatccgt-c 941
|||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
Sbjct: 2454 gaaaaaatccgagggtgtcagcttcacctggcagccctcaggtggg-aaggatgccgtcc 2512
Query: 942 aggcgtccccca-gcgtgattcctgtggttgcta 974
|||||||||||| ||||||||||||||| |||||
Sbjct: 2513 aggcgtcccccacgcgtgattcctgtggctgcta 2546
>gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffold487
Length = 3028
Score = 276 bits (139), Expect = 2e-71
Identities = 154/159 (96%)
Strand = Plus / Minus
Query: 248 gggaaggggctggagtggctggcatatattgatagtagtggtggtagcacctactacgca 307
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2633 gggaaggggctggagtggctggcatatattactagtagtggtggtagcacctactacgca 2574
Query: 308 gactctgtggagggccgattcaccatctccagagacaactcccagaacacggcctatttg 367
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 2573 gactctgtgaagggccgattcaccatctccagcgacaactcccagaacacggcctatctg 2514
Query: 368 caaatgaacagcctgagaaccgaagacacggcccgctat 406
|||||||||||||||||||||||||||||||||||||||
Sbjct: 2513 caaatgaacagcctgagaaccgaagacacggcccgctat 2475
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,908,683
Number of extensions: 177
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 3
Length of query: 974
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 953
Effective length of database: 2,808,413,156
Effective search space: 2676417737668
Effective search space used: 2676417737668
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)