Animal-Genome cDNA 20110601C-000396


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000396
         (974 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].      288   9e-79
Alignment   gi|XP_002696847.1| PREDICTED: IgM [Bos taurus].                      100   2e-21
Alignment   gi|XP_002684044.1| PREDICTED: Ig heavy chain-like, partial [Bos...   100   3e-21
Alignment   gi|XP_002696848.1| PREDICTED: IgM [Bos taurus].                       97   3e-20
Alignment   gi|XP_002683686.1| PREDICTED: hypothetical protein [Bos taurus].      80   3e-15
Alignment   gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo...    73   4e-13
Alignment   gi|XP_002694682.1| PREDICTED: hCG96018-like [Bos taurus].             54   2e-07
Alignment   gi|XP_002694688.1| PREDICTED: immunoglobulin iota chain-like, p...    50   3e-06
Alignment   gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].          49   7e-06
Alignment   gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].          49   7e-06

>ref|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].
          Length = 487

 Score =  288 bits (738), Expect(2) = 9e-79
 Identities = 155/305 (50%), Positives = 195/305 (63%), Gaps = 16/305 (5%)
 Frame = +2

Query: 86  WVVLFALL--QAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGL 259
           W +LF L   + V  + +L ESG  LV+P  +L L+C  SGF+ S Y + WVRQAPGK L
Sbjct: 5   WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTASGFSLSSYGINWVRQAPGKAL 64

Query: 260 EWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLCFGGGS---- 427
           E LA I + GG+T Y  +++ R  I++D S++   L ++S+ TEDTA Y C    +    
Sbjct: 65  ECLACI-TGGGNTAYNPALKSRLNITKDKSKSQVSLSLSSVTTEDTATYYCAKYSTDDCA 123

Query: 428 ---------FWGPGXXXXXXXXXXISPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTV 580
                     WG G           SP IFPL+LG+++PAG VVI CLV+ FFPS PL+V
Sbjct: 124 CSSERNYIDAWGQGLLVTVSSESETSPSIFPLSLGNNDPAGQVVIGCLVQGFFPSAPLSV 183

Query: 581 TWSPSREGVIVRNFPPAQAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVPC 760
           TW+ + + V VRNFP   AG LYTMSSQLTLP   CP  Q + CQVQHLSK+S++V VPC
Sbjct: 184 TWNQNGDSVSVRNFPAVLAGSLYTMSSQLTLPASLCPKGQSVTCQVQHLSKASKTVAVPC 243

Query: 761 KVLPSDP-CPQCCKPSLSLQPPALADLLLGSNASPHCTLSGLKKSEGVSFTWQPSGGKGI 937
            +  S   C   C+PSLS+QPPAL DLLLGSNAS  CTLSGLK +EG SFTW P+GGK  
Sbjct: 244 IIQDSSSCCVPNCEPSLSVQPPALEDLLLGSNASLTCTLSGLKSAEGASFTWNPTGGKTA 303

Query: 938 RQASP 952
            Q SP
Sbjct: 304 VQGSP 308



 Score = 24.3 bits (51), Expect(2) = 9e-79
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 943 GVPQRDSCGC 972
           G P+RDSCGC
Sbjct: 306 GSPKRDSCGC 315


>ref|XP_002696847.1| PREDICTED: IgM [Bos taurus].
          Length = 193

 Score =  100 bits (249), Expect = 2e-21
 Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 2/111 (1%)
 Frame = +2

Query: 86  WVVLFALL--QAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGL 259
           W +LF L   + V  + +L ESG  LV+P  +L L+C  SGF+ S  SV WVRQAPGK L
Sbjct: 5   WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTVSGFSLSDNSVGWVRQAPGKAL 64

Query: 260 EWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           EWL  I  SGGST Y  +++ R +I++DNS++   L ++S+ TEDTA Y C
Sbjct: 65  EWLGVI-YSGGSTGYNPALKSRLSITKDNSKSQVSLSLSSVTTEDTATYYC 114


>ref|XP_002684044.1| PREDICTED: Ig heavy chain-like, partial [Bos taurus].
          Length = 121

 Score =  100 bits (248), Expect = 3e-21
 Identities = 53/111 (47%), Positives = 74/111 (66%), Gaps = 2/111 (1%)
 Frame = +2

Query: 86  WVVLFALL--QAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGL 259
           W +LF L   + V  + +L ESG  LV+P  +L L+C  SGF+ S Y+V WVRQAPGK L
Sbjct: 5   WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTISGFSLSSYAVGWVRQAPGKAL 64

Query: 260 EWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           EW+  I SSGGST    +++ R +I++DNS++   L ++S+ TEDTA Y C
Sbjct: 65  EWVGGI-SSGGSTCLNPALKSRLSITKDNSKSQVSLSVSSVTTEDTATYYC 114


>ref|XP_002696848.1| PREDICTED: IgM [Bos taurus].
          Length = 259

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 50/111 (45%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
 Frame = +2

Query: 86  WVVLFALL--QAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGL 259
           W +LF L   + V  + +L ESG  LV+P  +L L+C  SGF+ S   V WVRQAPGK L
Sbjct: 5   WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTVSGFSLSSNGVGWVRQAPGKAL 64

Query: 260 EWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           EW+  ID+  G TYY  +++ R +I++DNS++   L ++S+  EDTA Y C
Sbjct: 65  EWVGGIDND-GDTYYNPALKSRLSITKDNSKSQVSLSVSSVTPEDTATYYC 114


>ref|XP_002683686.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 226

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 4/114 (3%)
 Frame = +2

Query: 86  WVVLFALLQAVQG---EEKLVESGGGLVQPGGSLRLSCVGSGFTF-SKYSVRWVRQAPGK 253
           W +L  L+   QG   + +L ESG  L++   +L L+C GSG++  S Y   W+RQAPGK
Sbjct: 4   WGLLLCLVTGPQGVLSQVQLQESGPELIKSSQTLSLTCAGSGYSITSDYGRNWIRQAPGK 63

Query: 254 GLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLCF 415
           GLE +  +  +G  TYY+ S++   +I RD  +N   LQ++S+ TEDTA  +C+
Sbjct: 64  GLEQMGCMYYNG-DTYYSPSIKSHTSICRDTPKNQFSLQLSSVPTEDTA--MCY 114


>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
          Length = 235

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 58/196 (29%), Positives = 81/196 (41%), Gaps = 10/196 (5%)
 Frame = +2

Query: 167 GGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDN 346
           G  + ++C GS      Y V W +Q PG GL+ + Y D      Y    V  RF+ S+  
Sbjct: 34  GQRVSITCSGSSTNIGIYGVNWYQQVPGSGLKTIIYEDK-----YRPSGVPDRFSGSK-- 86

Query: 347 SQNTAYLQMNSLRTEDTARYLCFGGG-----SFWGPGXXXXXXXXXXISPKIFPLTLGSS 511
           S NTA L +NSL+ ED A Y C  G      + +G G            P +      + 
Sbjct: 87  SGNTATLTINSLQAEDEADYFCAAGDYSVNTAVFGGGTTLTVLGQPKSPPSVTLFPPSTE 146

Query: 512 EPAG-YVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPA----QAGGLYTMSSQLTLP 676
           E  G    + CL+ DF+P   +TV W  +    I RN        Q+   Y  SS L+L 
Sbjct: 147 ELNGNKATLVCLISDFYPGS-VTVVWK-ADGSTITRNVETTRASKQSNSKYAASSYLSLT 204

Query: 677 VEQCPADQILKCQVQH 724
                +     C+V H
Sbjct: 205 SSDWKSKGSYSCEVTH 220


>ref|XP_002694682.1| PREDICTED: hCG96018-like [Bos taurus].
          Length = 150

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = +2

Query: 167 GGSLRLSC-VGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRD 343
           G S RLSC + SG+  S YS+ W +Q  G  L +L    S     +    V  RF+ S+D
Sbjct: 34  GASARLSCTLSSGYNVSNYSIYWYQQKAGNPLRYLLRFKSDSDK-HQGSGVPSRFSGSKD 92

Query: 344 NSQNTAYLQMNSLRTEDTARYLC 412
            S N   L ++ L+ ED A Y C
Sbjct: 93  ASTNAGLLLISGLQPEDEADYYC 115


>ref|XP_002694688.1| PREDICTED: immunoglobulin iota chain-like, partial [Bos taurus].
          Length = 169

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 33/87 (37%), Positives = 41/87 (47%)
 Frame = +2

Query: 167 GGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDN 346
           G  + ++C GS        V W +Q PG     L Y     G T  A  V  RF+ SR  
Sbjct: 37  GQRVSITCTGSSSNVGNGYVSWFQQIPGSAPRTLIY-----GDTSRASGVPDRFSGSR-- 89

Query: 347 SQNTAYLQMNSLRTEDTARYLCFGGGS 427
           S NTA L ++SL+ ED A Y C  G S
Sbjct: 90  SGNTATLTISSLQAEDEADYFCAAGDS 116


>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
          Length = 235

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 10/229 (4%)
 Frame = +2

Query: 92  VLFALLQAVQGEEKLVESGGGL-VQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWL 268
           +L   L   +G+ ++ +S   L    G  + ++C  S    +K +  W +Q PGK  + L
Sbjct: 10  LLLLWLPGKEGDIQVTQSPSSLSASLGDRVSITCQASQSIDTKLA--WYQQKPGKAPKLL 67

Query: 269 AYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLCFGGG---SFWGP 439
            Y      S +       +F+ S   +  T  L ++SL+ +D A Y C       + +G 
Sbjct: 68  IYAIPRSPSWF-----PSQFSGSGFGADFT--LTISSLKADDIATYYCLSRNCCVNTFGQ 120

Query: 440 GXXXXXXXXXXISPKIFPLTLGSSE-PAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVR 616
           G            P +F       +   G V + CLV DF+P + + V W          
Sbjct: 121 GTKVEIKRSDA-EPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKD-INVKWKVDGVTQSSS 178

Query: 617 NFPPA-----QAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSV 748
           NF  +          Y++SS LTLP  +  +     C+V H S ++  V
Sbjct: 179 NFQNSFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLV 227


>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
          Length = 235

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 10/229 (4%)
 Frame = +2

Query: 92  VLFALLQAVQGEEKLVESGGGL-VQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWL 268
           +L   L   +G+ ++ +S   L    G  + ++C  S    +K +  W +Q PGK  + L
Sbjct: 10  LLLLWLPGKEGDIQVTQSPSSLSASLGDRVSITCQASQSIDTKLA--WYQQKPGKAPKLL 67

Query: 269 AYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLCFGGG---SFWGP 439
            Y      S +       +F+ S   +  T  L ++SL+ +D A Y C       + +G 
Sbjct: 68  IYAIPRSPSWF-----PSQFSGSGFGADFT--LTISSLKADDIATYYCLSRNCCVNTFGQ 120

Query: 440 GXXXXXXXXXXISPKIFPLTLGSSE-PAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVR 616
           G            P +F       +   G V + CLV DF+P + + V W          
Sbjct: 121 GTKVEIKRSDA-EPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKD-INVKWKVDGVTQSSS 178

Query: 617 NFPPA-----QAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSV 748
           NF  +          Y++SS LTLP  +  +     C+V H S ++  V
Sbjct: 179 NFQNSFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLV 227


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,998,845
Number of extensions: 1684257
Number of successful extensions: 8707
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 8538
Number of HSP's successfully gapped: 11
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000396
         (974 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III regi...   184   1e-46
Alignment   gi|XP_848432.1| PREDICTED: similar to Ig heavy chain V-III regi...   180   2e-45
Alignment   gi|XP_848935.1| PREDICTED: similar to Ig heavy chain V-III regi...   179   5e-45
Alignment   gi|XP_848877.1| PREDICTED: similar to Ig heavy chain V-III regi...   178   8e-45
Alignment   gi|XP_848616.1| PREDICTED: similar to Ig heavy chain V-III regi...   178   8e-45
Alignment   gi|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III regi...   176   2e-44
Alignment   gi|XP_848796.1| PREDICTED: similar to Ig heavy chain V-III regi...   176   2e-44
Alignment   gi|XP_848599.1| PREDICTED: similar to Ig heavy chain V-III regi...   176   4e-44
Alignment   gi|XP_848486.1| PREDICTED: similar to Ig heavy chain V-III regi...   173   3e-43
Alignment   gi|XP_849354.1| PREDICTED: similar to Ig heavy chain V-III regi...   172   6e-43

>ref|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
           [Canis familiaris].
          Length = 142

 Score =  184 bits (467), Expect = 1e-46
 Identities = 93/139 (66%), Positives = 110/139 (79%), Gaps = 5/139 (3%)
 Frame = +2

Query: 35  SVIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFS 214
           S IR E+R   ME  + WV L A+L+ VQGE +LVESGG LV+PGGSLRLSCV SGFTFS
Sbjct: 3   SGIRVENRRLNMESFVGWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFS 62

Query: 215 KYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTED 394
            Y++ WVRQAPGKGL+W+AYI+S G STYYAD+V+GRFTISRDN++NT YLQMNSLR+ED
Sbjct: 63  SYAMSWVRQAPGKGLQWVAYINSGGSSTYYADAVKGRFTISRDNARNTLYLQMNSLRSED 122

Query: 395 TARYLC-----FGGGSFWG 436
           TA Y C     F  GS+ G
Sbjct: 123 TAVYYCPKDTVFSPGSYLG 141


>ref|XP_848432.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
           [Canis familiaris].
          Length = 267

 Score =  180 bits (457), Expect = 2e-45
 Identities = 87/124 (70%), Positives = 100/124 (80%)
 Frame = +2

Query: 50  EHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVR 229
           EHR   ME  L+WV L  +L+ VQGE +LVESGG LV+PGGSLRLSCV SGFTFS Y + 
Sbjct: 104 EHRQRTMESALSWVFLVTILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSYHMS 163

Query: 230 WVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYL 409
           WVRQAPGKGL+W+AYI+S G ST YAD+V+GRFTISRDN++NT YLQMNSLR EDTA Y 
Sbjct: 164 WVRQAPGKGLQWVAYINSGGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYY 223

Query: 410 CFGG 421
           C  G
Sbjct: 224 CAKG 227


>ref|XP_848935.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
           [Canis familiaris].
          Length = 315

 Score =  179 bits (453), Expect = 5e-45
 Identities = 87/126 (69%), Positives = 98/126 (77%)
 Frame = +2

Query: 35  SVIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFS 214
           SVIR +HR   ME  L WV L A+LQ VQGE +LVESGG L +PGGSLRLSCV SG TFS
Sbjct: 156 SVIRTQHRQITMESVLGWVFLVAILQGVQGEVQLVESGGDLAKPGGSLRLSCVASGLTFS 215

Query: 215 KYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTED 394
            YS+ WVRQAPGKGL+W+  I   G STYY D+V+GRFTISRDN++NT YLQMNSLR ED
Sbjct: 216 SYSMSWVRQAPGKGLQWVTAISYDGSSTYYTDAVKGRFTISRDNARNTVYLQMNSLRAED 275

Query: 395 TARYLC 412
           TA Y C
Sbjct: 276 TAVYYC 281


>ref|XP_848877.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
           [Canis familiaris].
          Length = 250

 Score =  178 bits (451), Expect = 8e-45
 Identities = 86/125 (68%), Positives = 99/125 (79%)
 Frame = +2

Query: 38  VIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSK 217
           +IR + R   ME  L+WV L A+LQ VQGE +LVESGG LV+PGGSLRLSCV SGFTFS 
Sbjct: 108 LIRTQQRQTTMESVLSWVFLVAILQGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSN 167

Query: 218 YSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDT 397
           Y + WVRQAPGKGL+W+A I   G STYY D+V+GRFTISRDN++NT YLQMNSLR EDT
Sbjct: 168 YDMSWVRQAPGKGLQWVAAISYDGSSTYYTDAVKGRFTISRDNARNTVYLQMNSLRAEDT 227

Query: 398 ARYLC 412
           A Y C
Sbjct: 228 AVYYC 232



 Score =  133 bits (335), Expect(2) = 2e-31
 Identities = 63/89 (70%), Positives = 73/89 (82%)
 Frame = +2

Query: 146 GGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGR 325
           G  LV+PGGSLRLSCV SGFTFS+Y++ WV QAPGKGL+W+A I SSG STYY D+V+GR
Sbjct: 10  GEDLVKPGGSLRLSCVTSGFTFSRYAMSWVGQAPGKGLQWVAAISSSGSSTYYVDAVKGR 69

Query: 326 FTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           FTIS DN++N  YLQMNSLR ED A Y C
Sbjct: 70  FTISIDNAKNMVYLQMNSLRAEDIAVYYC 98



 Score = 21.6 bits (44), Expect(2) = 2e-31
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 123 VRRSWWSLEEAWCSLGG 173
           V+ SWWSL E     GG
Sbjct: 2   VKCSWWSLGEDLVKPGG 18


>ref|XP_848616.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
           [Canis familiaris].
          Length = 186

 Score =  178 bits (451), Expect = 8e-45
 Identities = 89/130 (68%), Positives = 102/130 (78%)
 Frame = +2

Query: 38  VIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSK 217
           VIR +HR   ME  L+WV L A+LQ VQGE +LVESGG LV+P GSLRLSCV SGFTFS 
Sbjct: 22  VIRTQHRQITMESVLSWVFLVAILQGVQGEVQLVESGGDLVKPAGSLRLSCVASGFTFSS 81

Query: 218 YSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDT 397
           YS+ WVRQAP KGL+ +A I+S G STYY D+V+GRFTISRDN++NT YLQMNSLR EDT
Sbjct: 82  YSMSWVRQAPEKGLQLVAGINSGGSSTYYTDAVKGRFTISRDNAKNTVYLQMNSLRAEDT 141

Query: 398 ARYLCFGGGS 427
           A Y C   GS
Sbjct: 142 AMYYCAEAGS 151


>ref|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
           [Canis familiaris].
          Length = 162

 Score =  176 bits (447), Expect = 2e-44
 Identities = 86/124 (69%), Positives = 101/124 (81%)
 Frame = +2

Query: 41  IRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKY 220
           IR E+R   M+  L WV L A+L+ VQGE +LVESGG LV+PGGSLRLSCV SGFTFS Y
Sbjct: 4   IRTEYRQLTMKLVLGWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSY 63

Query: 221 SVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTA 400
           ++ WVRQAPGKGL+W+A+I  SG ST YAD+V+GRFTISRDN++NT YLQMNSLR EDTA
Sbjct: 64  NMGWVRQAPGKGLQWVAWIYDSGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTA 123

Query: 401 RYLC 412
            Y C
Sbjct: 124 VYYC 127


>ref|XP_848796.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
           [Canis familiaris].
          Length = 244

 Score =  176 bits (447), Expect = 2e-44
 Identities = 85/123 (69%), Positives = 98/123 (79%)
 Frame = +2

Query: 44  RKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYS 223
           + EH+   ME  L WV L A+L+ VQ E +LVESGG LV+P GSLRLSCV SGFTFS Y 
Sbjct: 70  KTEHKQLTMESVLCWVFLVAILKGVQSEVQLVESGGDLVKPVGSLRLSCVASGFTFSSYD 129

Query: 224 VRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTAR 403
           + WVRQAPGKGL+W+AYI S G STYYAD+V+GRFTISRDN++NT YLQMNSLR EDTA 
Sbjct: 130 MNWVRQAPGKGLQWVAYISSGGSSTYYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAM 189

Query: 404 YLC 412
           Y C
Sbjct: 190 YYC 192


>ref|XP_848599.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
           [Canis familiaris].
          Length = 201

 Score =  176 bits (445), Expect = 4e-44
 Identities = 88/133 (66%), Positives = 101/133 (75%)
 Frame = +2

Query: 41  IRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKY 220
           IR+E R   ME  L+WV L  +L+ VQ E +LVESGG LV+P GSLRLSCV SGFTFS Y
Sbjct: 40  IRRELRKLTMESVLSWVFLVTILKGVQCEVQLVESGGDLVKPEGSLRLSCVVSGFTFSSY 99

Query: 221 SVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTA 400
            + WVRQAPGKGL+W+AYI S G ST Y D+V+GRFTISRDN++NT YLQMNSLRTEDTA
Sbjct: 100 DMSWVRQAPGKGLQWVAYISSDGRSTSYTDAVKGRFTISRDNAKNTLYLQMNSLRTEDTA 159

Query: 401 RYLCFGGGSFWGP 439
            Y C  G   W P
Sbjct: 160 VYYCAAGSLGWFP 172


>ref|XP_848486.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
           [Canis familiaris].
          Length = 239

 Score =  173 bits (438), Expect = 3e-43
 Identities = 86/126 (68%), Positives = 100/126 (79%)
 Frame = +2

Query: 35  SVIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFS 214
           S I  EHR   M   L+WV L A+++ VQGE +LVESGG LV+PGGSLRLSCV SGFTFS
Sbjct: 57  SGIWTEHRQLTMTSVLSWVFLAAIVKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFS 116

Query: 215 KYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTED 394
            Y + WVRQAPGKGLEW+A I  SG +TYYA++V+GRFTISRDN++N AYLQMNSLR ED
Sbjct: 117 NYEMYWVRQAPGKGLEWVARIYESGSTTYYAEAVKGRFTISRDNAKNMAYLQMNSLRAED 176

Query: 395 TARYLC 412
           TA Y C
Sbjct: 177 TAVYYC 182


>ref|XP_849354.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
           [Canis familiaris].
          Length = 350

 Score =  172 bits (435), Expect = 6e-43
 Identities = 83/125 (66%), Positives = 100/125 (80%)
 Frame = +2

Query: 38  VIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSK 217
           +IR + +  +ME  L WV L A+L+ VQGE +LVE GG LV+PGGSLRLSCV SGFTFS 
Sbjct: 132 LIRTQRKQTSMESVLGWVFLVAILKGVQGELQLVELGGDLVKPGGSLRLSCVASGFTFSS 191

Query: 218 YSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDT 397
           Y++ WV QAPGKGL+W+A I SSG STY+ D+V+GRFTISRDN++NT YLQMNSLR EDT
Sbjct: 192 YAMSWVCQAPGKGLQWVAAISSSGSSTYHVDAVKGRFTISRDNAKNTVYLQMNSLRAEDT 251

Query: 398 ARYLC 412
           A Y C
Sbjct: 252 AVYYC 256



 Score =  153 bits (387), Expect = 2e-37
 Identities = 75/115 (65%), Positives = 89/115 (77%)
 Frame = +2

Query: 68  MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
           ME  L+ V L A+L+ VQGE  LVESGG LV+P GSLR SCV SGFTFS Y + WVRQAP
Sbjct: 1   MESALHRVSLVAILKGVQGEVPLVESGGELVKPEGSLRFSCVASGFTFSSYWISWVRQAP 60

Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           GKGL W++ I+  G +TY+AD+V+GRFTISRDN++NT YLQMNSLR E T  Y C
Sbjct: 61  GKGLHWVSVINKDGSTTYHADAVKGRFTISRDNAKNTLYLQMNSLRAEGTTVYYC 115



 Score =  107 bits (267), Expect = 2e-23
 Identities = 51/72 (70%), Positives = 59/72 (81%)
 Frame = +2

Query: 116 VQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGS 295
           VQGE +LVESGG LV+P G LRLSCV SGFTFS Y + WVRQAPGK L+W+AYI+S G S
Sbjct: 266 VQGEVQLVESGGDLVKPCGLLRLSCVASGFTFSSYIMSWVRQAPGKWLQWVAYINSGGSS 325

Query: 296 TYYADSVEGRFT 331
           T Y D+V+GRFT
Sbjct: 326 TRYTDAVKGRFT 337


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,113,985
Number of extensions: 1732598
Number of successful extensions: 8844
Number of sequences better than 1.0e-05: 118
Number of HSP's gapped: 8646
Number of HSP's successfully gapped: 129
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000396
         (974 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-...   176   2e-44
Alignment   gi|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084...   172   3e-43
Alignment   gi|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-...   171   9e-43
Alignment   gi|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941...   169   4e-42
Alignment   gi|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-...   169   4e-42
Alignment   gi|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-...   169   5e-42
Alignment   gi|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-...   168   6e-42
Alignment   gi|XP_003119639.1| PREDICTED: hypothetical protein LOC100508797...   162   3e-40
Alignment   gi|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917...   161   1e-39
Alignment   gi|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-...   156   3e-38

>ref|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
          Length = 231

 Score =  176 bits (447), Expect = 2e-44
 Identities = 86/115 (74%), Positives = 100/115 (86%)
 Frame = +2

Query: 68  MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
           MEF L+WV+L A+L+ VQ E +LVESGGGLVQPGGSLRLSC  SGFTFS Y++ WVRQAP
Sbjct: 1   MEFWLSWVLLVAILKDVQCEVQLVESGGGLVQPGGSLRLSCSASGFTFSSYAMHWVRQAP 60

Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           GKGLE+++ I S+GGSTYYADSV+GRFTISRDNS+NT YLQM+SLR EDTA Y C
Sbjct: 61  GKGLEYVSAISSNGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYC 115


>ref|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084 [Homo sapiens].
          Length = 279

 Score =  172 bits (437), Expect = 3e-43
 Identities = 83/115 (72%), Positives = 95/115 (82%)
 Frame = +2

Query: 68  MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
           MEF L+WV L A+L+ VQ E +LVESGG +VQPGGSLRLSC  SGFTF  Y++ WVRQAP
Sbjct: 1   MEFGLSWVFLVAILKGVQCEVQLVESGGVVVQPGGSLRLSCAASGFTFDDYAMHWVRQAP 60

Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           GKGLEW++ I   GGSTYYADSV+GRFTISRDNS+N+ YLQMNSLR EDTA Y C
Sbjct: 61  GKGLEWVSLISWDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRAEDTALYYC 115



 Score = 89.0 bits (219), Expect = 6e-18
 Identities = 48/92 (52%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
 Frame = +2

Query: 164 PGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGS--TYYADSVEGRFTIS 337
           PG S +     SGFTFS + + W+RQA GKGLEW+  I +   S  T  A SV+GRFTIS
Sbjct: 123 PGESWQGEGYSSGFTFSDFWMHWIRQASGKGLEWVGRIRTKRNSYTTECAASVKGRFTIS 182

Query: 338 RDNSQNTAYLQMNSLRTEDTARYLCFGGGSFW 433
           RD+S+NT Y+QMN+L+T+ TA Y   G G  W
Sbjct: 183 RDDSKNTLYMQMNTLKTKYTAIYYSPGQGLEW 214



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 28/65 (43%), Positives = 41/65 (63%)
 Frame = +2

Query: 212 SKYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTE 391
           +KY+   +  +PG+GLEW+ +I +  G+  Y     GRF  S D S + AYLQ++SL+ E
Sbjct: 199 TKYTA--IYYSPGQGLEWMGWIITYTGNPMYTHGFTGRFVFSMDTSVSMAYLQISSLKAE 256

Query: 392 DTARY 406
           DTA Y
Sbjct: 257 DTAVY 261


>ref|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
          Length = 147

 Score =  171 bits (433), Expect = 9e-43
 Identities = 83/115 (72%), Positives = 97/115 (84%)
 Frame = +2

Query: 68  MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
           MEF L+WV L A+L+ VQ E +LV+SGGGLVQPGGSLRLSC GSGFTFS Y++ WVRQAP
Sbjct: 1   MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVQPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60

Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           GKGLEW++ I  +GG TYYADSV+GRFTISRDN++N+ YLQMNSLR ED A Y C
Sbjct: 61  GKGLEWVSAI-GTGGGTYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYC 114


>ref|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941 [Homo sapiens].
          Length = 297

 Score =  169 bits (428), Expect = 4e-42
 Identities = 82/115 (71%), Positives = 96/115 (83%)
 Frame = +2

Query: 68  MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
           MEF L+WV L A+L+ VQ E +LV+SGGGLV PGGSLRLSC GSGFTFS Y++ WVRQAP
Sbjct: 1   MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVHPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60

Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           GKGLEW++ I  +GG TYYADSV+GRFTISRDN++N+ YLQMNSLR ED A Y C
Sbjct: 61  GKGLEWVSAI-GTGGGTYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYC 114


>ref|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
          Length = 147

 Score =  169 bits (428), Expect = 4e-42
 Identities = 82/115 (71%), Positives = 96/115 (83%)
 Frame = +2

Query: 68  MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
           MEF L+WV L A+L+ VQ E +LV+SGGGLV PGGSLRLSC GSGFTFS Y++ WVRQAP
Sbjct: 1   MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVHPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60

Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           GKGLEW++ I  +GG TYYADSV+GRFTISRDN++N+ YLQMNSLR ED A Y C
Sbjct: 61  GKGLEWVSAI-GTGGGTYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYC 114


>ref|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
          Length = 186

 Score =  169 bits (427), Expect = 5e-42
 Identities = 80/115 (69%), Positives = 95/115 (82%)
 Frame = +2

Query: 68  MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
           MEF L+WV L A+++ VQ + +LVESGGGLV+PGGSLRLSC  SGFTFS Y + W+RQAP
Sbjct: 1   MEFGLSWVFLVAIIKGVQCQVQLVESGGGLVKPGGSLRLSCAASGFTFSDYYMSWIRQAP 60

Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           GKGLEW++YI SS   T YADSV+GRFTISRDN++N+ YLQMNSLR EDTA Y C
Sbjct: 61  GKGLEWVSYISSSSSYTNYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC 115


>ref|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
          Length = 173

 Score =  168 bits (426), Expect = 6e-42
 Identities = 82/115 (71%), Positives = 92/115 (80%)
 Frame = +2

Query: 68  MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
           MEF L+WV L ALL+ VQ + +LVESGGG+VQPG SLRLSC  SGFTFS Y + WVRQAP
Sbjct: 1   MEFGLSWVFLVALLRGVQCQVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAP 60

Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           GKGLEW+A I   G + YYADSV+GRFTISRDNS+NT YLQMNSLR  DTA Y C
Sbjct: 61  GKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAGDTAVYYC 115


>ref|XP_003119639.1| PREDICTED: hypothetical protein LOC100508797 [Homo sapiens].
          Length = 309

 Score =  162 bits (411), Expect = 3e-40
 Identities = 86/138 (62%), Positives = 100/138 (72%), Gaps = 4/138 (2%)
 Frame = +2

Query: 11  RSPAPGS----RSVIRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSL 178
           RSP+ G      SVIR EH     EF L+WV L A+L+ VQ E++LVESGGGLVQPGGSL
Sbjct: 108 RSPSLGIPKCLHSVIRTEHTGLTREFVLSWVFLVAILKCVQCEDQLVESGGGLVQPGGSL 167

Query: 179 RLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNT 358
           R SC  SGF FS Y + WVR+APGKG EW++ I  +GG TYYADSV GRFTISRDN++ +
Sbjct: 168 RPSCAASGFAFSSYVLHWVRRAPGKGPEWVSAI-GTGGDTYYADSVMGRFTISRDNAKKS 226

Query: 359 AYLQMNSLRTEDTARYLC 412
            YLQMNSL  ED A Y C
Sbjct: 227 LYLQMNSLIAEDMAVYYC 244


>ref|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917 [Homo sapiens].
          Length = 295

 Score =  161 bits (407), Expect = 1e-39
 Identities = 80/124 (64%), Positives = 96/124 (77%)
 Frame = +2

Query: 41  IRKEHRPPAMEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKY 220
           + K  +    E  L+W+ L A+L+ VQ E +LVESGGGLV+PGGSLRLSC  SGFTFS Y
Sbjct: 13  LHKSEKRTTKESWLSWLFLVAILKGVQCEVQLVESGGGLVKPGGSLRLSCAASGFTFSDY 72

Query: 221 SVRWVRQAPGKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTA 400
            + WVRQAPGKGLEW++ I SS  + YYADSV+GRFTISRDN++N+ YLQMNSLR EDTA
Sbjct: 73  YMNWVRQAPGKGLEWVSSI-SSSSTIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTA 131

Query: 401 RYLC 412
            Y C
Sbjct: 132 VYYC 135



 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
 Frame = +2

Query: 116 VQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVR--WVRQAPGKGLEWLAYIDSSG 289
           V  +  L ESG  LV+P  +L L+C  SGF+ S   +R  W+RQ PGK LEWLA ID   
Sbjct: 164 VLSQVTLKESGPALVKPTQTLTLTCTFSGFSLSTSGMRVSWIRQPPGKALEWLARIDWDD 223

Query: 290 GSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
              +Y+ S++ R TIS+D S+N   L M ++   DTA Y C
Sbjct: 224 DK-FYSTSLKTRLTISKDTSKNQVVLTMTNMDPVDTATYYC 263


>ref|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
          Length = 148

 Score =  156 bits (394), Expect = 3e-38
 Identities = 77/115 (66%), Positives = 88/115 (76%)
 Frame = +2

Query: 68  MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
           MEF L+WV L A+LQ V  E +LVESG GL QPGG L+LS   SGFT   + + W+ QAP
Sbjct: 1   MEFELSWVFLVAILQGVHCEVQLVESGRGLAQPGGYLKLSGAASGFTVGSWYMSWIHQAP 60

Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           GKGLEW++YI SSG ST YADSV+GRFTIS DNS+NT YLQMNSLR EDTA Y C
Sbjct: 61  GKGLEWVSYISSSGCSTNYADSVKGRFTISTDNSKNTLYLQMNSLRVEDTAVYYC 115


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,976,781
Number of extensions: 1694119
Number of successful extensions: 8805
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 8660
Number of HSP's successfully gapped: 21
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000396
         (974 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mu...   161   8e-40
Alignment   gi|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1...   154   8e-38
Alignment   gi|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musc...   154   8e-38
Alignment   gi|XP_923669.1| PREDICTED: putative V-set and immunoglobulin do...   107   1e-23
Alignment   gi|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361...   107   1e-23
Alignment   gi|XP_003086829.1| PREDICTED: similar to immunoglobulin mu-chai...   102   4e-22
Alignment   gi|XP_003086828.1| PREDICTED: hypothetical protein LOC100505002...    98   1e-20
Alignment   gi|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292...    92   6e-19

>ref|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mus musculus].
          Length = 349

 Score =  161 bits (407), Expect = 8e-40
 Identities = 83/155 (53%), Positives = 104/155 (67%), Gaps = 3/155 (1%)
 Frame = +2

Query: 476 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 652
           +P I+PLTL  +  +  V+I CL+ D+FPS  + VTW  S + +   NFPPA A GG YT
Sbjct: 10  NPTIYPLTLPRALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGGYT 69

Query: 653 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVPCK--VLPSDPCPQCCKPSLSLQPPA 826
           MSSQLTLP  +CP  + +KC VQH S + Q +NV C     P+ P P  C+PSLSLQ PA
Sbjct: 70  MSSQLTLPAVECPEGESVKCSVQHDSNAVQELNVKCSGPPPPTTPPPPSCQPSLSLQRPA 129

Query: 827 LADLLLGSNASPHCTLSGLKKSEGVSFTWQPSGGK 931
           L DLLLGS+AS  CTL+GL+  EG  FTW+PS GK
Sbjct: 130 LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGK 164


>ref|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].
          Length = 354

 Score =  154 bits (390), Expect = 8e-38
 Identities = 82/156 (52%), Positives = 103/156 (66%), Gaps = 4/156 (2%)
 Frame = +2

Query: 476 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 652
           +P I+PLTL  +  +  V+I CL+ D+FPS  + VTW  S + +   NFPPA A GG YT
Sbjct: 15  NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 74

Query: 653 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVPCKVLPSDPCP---QCCKPSLSLQPP 823
           MSSQLTLP  +CP  + +KC VQH S   Q ++V C   P+ P P     C+PSLSLQ P
Sbjct: 75  MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSG-PTPPPPITIPSCQPSLSLQRP 133

Query: 824 ALADLLLGSNASPHCTLSGLKKSEGVSFTWQPSGGK 931
           AL DLLLGS+AS  CTL+GL+  EG  FTW+PS GK
Sbjct: 134 ALEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGK 169


>ref|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musculus].
          Length = 413

 Score =  154 bits (390), Expect = 8e-38
 Identities = 82/156 (52%), Positives = 103/156 (66%), Gaps = 4/156 (2%)
 Frame = +2

Query: 476 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 652
           +P I+PLTL  +  +  V+I CL+ D+FPS  + VTW  S + +   NFPPA A GG YT
Sbjct: 74  NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 133

Query: 653 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVPCKVLPSDPCP---QCCKPSLSLQPP 823
           MSSQLTLP  +CP  + +KC VQH S   Q ++V C   P+ P P     C+PSLSLQ P
Sbjct: 134 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSG-PTPPPPITIPSCQPSLSLQRP 192

Query: 824 ALADLLLGSNASPHCTLSGLKKSEGVSFTWQPSGGK 931
           AL DLLLGS+AS  CTL+GL+  EG  FTW+PS GK
Sbjct: 193 ALEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGK 228



 Score = 99.0 bits (245), Expect = 5e-21
 Identities = 47/68 (69%), Positives = 52/68 (76%)
 Frame = +2

Query: 68  MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
           M+  LNWV L  LL  +Q E KLVESGGGLVQPGGSLRLSC  SGFTFS + + WVRQ P
Sbjct: 1   MKLWLNWVFLLTLLHGIQCEVKLVESGGGLVQPGGSLRLSCATSGFTFSDFYMEWVRQPP 60

Query: 248 GKGLEWLA 271
           GK LEW+A
Sbjct: 61  GKRLEWIA 68


>ref|XP_923669.1| PREDICTED: putative V-set and immunoglobulin domain-containing
           protein 6-like [Mus musculus].
          Length = 208

 Score =  107 bits (268), Expect = 1e-23
 Identities = 54/109 (49%), Positives = 73/109 (66%)
 Frame = +2

Query: 86  WVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEW 265
           ++ L A    V  + +L ESG GLV P  SL ++C  SGF+ + Y V WVRQ PGKGLEW
Sbjct: 7   FLCLVAFPSCVLSQVQLKESGPGLVAPSQSLSITCTVSGFSLTSYGVHWVRQPPGKGLEW 66

Query: 266 LAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           L  I  +GGST Y  ++  R +IS+DNS++  +L+MNSL+T+DTA Y C
Sbjct: 67  LGVI-WAGGSTNYNSALMSRLSISKDNSKSQVFLKMNSLQTDDTAMYYC 114


>ref|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361 [Mus musculus].
          Length = 411

 Score =  107 bits (267), Expect = 1e-23
 Identities = 53/103 (51%), Positives = 71/103 (68%)
 Frame = +2

Query: 104 LLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDS 283
           LL  +  + +L ESG GLV P  SL ++C  SGF+ + Y V WVRQ PGKGLEWL  I  
Sbjct: 253 LLPGILSQVQLKESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMI-W 311

Query: 284 SGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
             GST Y  +++ R +IS+DNS++  +L+MNSL+T+DTARY C
Sbjct: 312 GDGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTDDTARYYC 354



 Score = 87.4 bits (215), Expect = 1e-17
 Identities = 44/94 (46%), Positives = 62/94 (65%)
 Frame = +2

Query: 116 VQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGS 295
           V  + ++ ESG  LVQP  +L L+C  SGF+ S Y V W R+ P KGLEWL  I  SGGS
Sbjct: 17  VLSQVQMKESGPDLVQPSQTLSLTCTVSGFSLSSYGVHWFRKPPRKGLEWLGGI-WSGGS 75

Query: 296 TYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDT 397
            YY  ++  R ++SRD S++  + +M+SL++EDT
Sbjct: 76  IYYNPALSSRLSVSRDISKSQVFFKMSSLQSEDT 109


>ref|XP_003086829.1| PREDICTED: similar to immunoglobulin mu-chain-like [Mus musculus].
          Length = 124

 Score =  102 bits (254), Expect = 4e-22
 Identities = 47/112 (41%), Positives = 73/112 (65%), Gaps = 2/112 (1%)
 Frame = +2

Query: 83  NWVVLFAL--LQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKG 256
           +W+ LF L     V  E +L +SG  LV+PG S+++SC  SG+TF+ Y + WV+Q+ GK 
Sbjct: 4   SWIFLFLLSGTAGVLSEVQLHQSGPELVKPGASVKMSCKASGYTFTNYYMHWVKQSHGKS 63

Query: 257 LEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           +EW+ YI  + G T Y    +G+ T++ D S +TAY+++ SL +ED+A Y C
Sbjct: 64  IEWIGYIYPNNGDTSYNQKFKGKATLTVDKSSSTAYMELRSLTSEDSAVYYC 115


>ref|XP_003086828.1| PREDICTED: hypothetical protein LOC100505002 [Mus musculus].
          Length = 302

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 45/112 (40%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
 Frame = +2

Query: 83  NWVVLFAL--LQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKG 256
           +W+ LF L     V  E +L +SG  L++PG S+++SC  SG+TF+ Y++ WV+Q+ GK 
Sbjct: 4   SWIFLFLLSGTAGVLSEVQLQQSGPELLKPGASVKISCKASGYTFTDYTMHWVKQSHGKS 63

Query: 257 LEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           LEW+  I+ + G T Y +  + + T++ D S +TAY+++ SL +ED+A Y C
Sbjct: 64  LEWIGGINPNYGGTSYNEKFKDKATLTVDKSSSTAYMELRSLTSEDSAVYYC 115



 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 36/99 (36%), Positives = 62/99 (62%)
 Frame = +2

Query: 116 VQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDSSGGS 295
           V  E  L +S   +V+ G S+++SC  SG++F+ Y + WV+Q+ GK L+ + YI+   G 
Sbjct: 180 VHSEVHLQQSLPKVVKAGPSVKISCKASGYSFTGYYMHWVKQSHGKILQRVEYINPYNGG 239

Query: 296 TYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC 412
           T Y +  + + T++ D S +TAY+ ++SL +ED+  Y C
Sbjct: 240 TGYIEKFKDKATLTADKSFSTAYMHLSSLTSEDSEVYSC 278



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 27/70 (38%), Positives = 44/70 (62%)
 Frame = +2

Query: 92  VLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLA 271
           V +    +V  E +L +SG  LV+PG S+++SC  SG++F+ Y + WV+Q+ GK LEW+ 
Sbjct: 112 VYYCARHSVNSEVQLQQSGPELVKPGASVKISCKASGYSFTGYYMHWVKQSHGKSLEWIG 171

Query: 272 YIDSSGGSTY 301
            I+   G  +
Sbjct: 172 EINPYNGGVH 181


>ref|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292 [Mus musculus].
          Length = 419

 Score = 92.0 bits (227), Expect = 6e-19
 Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
 Frame = +2

Query: 104 LLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAYIDS 283
           LL     + +L +SG  LV+PG S+++SC  SG+TF+ Y + WV+Q PG+GLEW+  ID 
Sbjct: 4   LLAGFNSQVQLQQSGAELVRPGASVKMSCKASGYTFTSYWMHWVKQRPGQGLEWIGAIDP 63

Query: 284 SGGSTYYADSVE---GRFTISRDNSQNTAYLQMNSLRTEDTARYLCF 415
           S   T Y    +    + T++ D S + AY+Q +SL +ED+  Y C+
Sbjct: 64  SDSETIYNQKFKDSRDKATLTVDKSSSIAYMQFSSLTSEDSVVYYCY 110


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,079,915
Number of extensions: 1395404
Number of successful extensions: 6746
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6620
Number of HSP's successfully gapped: 12
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000396
         (974 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_998993.1| IgG heavy chain [Sus scrofa].                        252   3e-67
Alignment   gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype...    65   6e-11

>ref|NP_998993.1| IgG heavy chain [Sus scrofa].
          Length = 474

 Score =  252 bits (643), Expect = 3e-67
 Identities = 151/309 (48%), Positives = 183/309 (59%), Gaps = 23/309 (7%)
 Frame = +2

Query: 68  MEFRLNWVVLFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAP 247
           MEFRLNWVVLFALLQ VQGEEKLVESGGGLVQPGGSL+LSCV SGF FSKY V WVR  P
Sbjct: 1   MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLKLSCVASGFIFSKYIVNWVRLVP 60

Query: 248 GKGLEWLAYIDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC----- 412
           GKGLEWLA I S+ GST+YADSV+GRFTISRDNSQNTAYLQMNSLRTEDTA Y C     
Sbjct: 61  GKGLEWLASIWST-GSTHYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTALYYCAREVC 119

Query: 413 ----------FGGGSFWGPGXXXXXXXXXXISPKIFPLTLGSSEPAG-YVVIACLVRDFF 559
                     + G   WGPG           +P ++PL     + +G  V + CL   +F
Sbjct: 120 FRYNTGCWDGYYGMDLWGPGVEVVVSSAPKTAPSVYPLAPCGRDTSGPNVALGCLASSYF 179

Query: 560 PSEPLTVTWSPSREGVIVRNFPPA-QAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKS 736
           P EP+T+TW+       V  FP   Q  GLY++SS +T+P     + +   C V H + +
Sbjct: 180 P-EPVTMTWNSGALTSGVHTFPSVLQPSGLYSLSSMVTVPASSL-SSKSYTCNVNHPATT 237

Query: 737 SQ-SVNVPCKVLPSDP-CPQC--CKPSLSLQPPALAD-LLLGSNASPHCTLSGLKKSEG- 898
           ++    V  K  P  P CP C    PS+ + PP   D L++       C +  + K    
Sbjct: 238 TKVDKRVGTKTKPPCPICPGCEVAGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHAE 297

Query: 899 VSFTWQPSG 925
           V F+W   G
Sbjct: 298 VQFSWYVDG 306


>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
           scrofa].
          Length = 233

 Score = 65.1 bits (157), Expect = 6e-11
 Identities = 61/222 (27%), Positives = 87/222 (39%), Gaps = 12/222 (5%)
 Frame = +2

Query: 95  LFALLQAVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSKYSVRWVRQAPGKGLEWLAY 274
           L +L        +L +  G  V  GG+  ++C G  F    Y   W +Q PG+    + Y
Sbjct: 10  LLSLCTGYVASSQLTQPPGVSVSLGGTASITCQGGNF--GSYYAHWYKQKPGQSPMLVIY 67

Query: 275 IDSSGGSTYYADSVEGRFTISRDNSQNTAYLQMNSLRTEDTARYLC-----FGGGSFWGP 439
             +   S      +  RF+ S+  S NTA L ++  + ED A Y C        G  +G 
Sbjct: 68  EYNKRAS-----GIPDRFSGSK--SGNTATLTISGAQAEDEADYYCQSSDDSDAGPLFGR 120

Query: 440 GXXXXXXXXXXISP--KIFPLTLGSSEPAG--YVVIACLVRDFFPSEPLTVTWSPSREGV 607
           G           +P   +FP    SSE  G     + CL+ DF+P   +TVTW      V
Sbjct: 121 GTRLSVLRQPKAAPTVNLFP---PSSEELGTNKATLVCLISDFYPG-AVTVTWKAGGTTV 176

Query: 608 ---IVRNFPPAQAGGLYTMSSQLTLPVEQCPADQILKCQVQH 724
              +    P  Q+   Y  SS L L      +     CQV H
Sbjct: 177 TQGVETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTH 218


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,080,030
Number of extensions: 1092600
Number of successful extensions: 5583
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5515
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000396
         (974 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   587   e-165
gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   276   2e-71

>gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffold764
          Length = 7672

 Score =  587 bits (296), Expect = e-165
 Identities = 302/304 (99%)
 Strand = Plus / Plus

                                                                        
Query: 461  tcagtgtctgaaatcagccccaaaatcttcccactgactctggggagcagcgagcctgcc 520
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 tcagtgtctgaaaccagccccaaaatcttcccactgactctggggagcagcgagcctgcc 1944

                                                                        
Query: 521  ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 2004

                                                                        
Query: 581  acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 2064

                                                                        
Query: 641  ggcctgtacaccatgagcagccagctgaccttgccagtcgagcagtgcccagccgatcag 700
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2065 ggcctgtacaccatgagcagccaggtgaccttgccagtcgagcagtgcccagccgatcag 2124

                                                                        
Query: 701  atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 760
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 2184

                
Query: 761  aaag 764
            ||||
Sbjct: 2185 aaag 2188



 Score =  321 bits (162), Expect = 4e-85
 Identities = 204/214 (95%), Gaps = 3/214 (1%)
 Strand = Plus / Plus

                                                                        
Query: 763  agttttaccttcagatccatgtccccagtgctgcaagcccagcctgtccctgcagccacc 822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2334 agttttaccttcagatccatgtccccagtgctgcaagcccagcctgtccctgcagccacc 2393

                                                                        
Query: 823  agcccttgcagacctgctcctgggctccaatgccagcccccactgcacactcagtggcct 882
            |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||
Sbjct: 2394 agcccttgcagacctgctcctgggctccaatgccagcctcacctgcacactcagtggcct 2453

                                                                        
Query: 883  gaaaaaatccgaaggtgtcagcttcacctggcagccctcaggtgggaaaggaatccgt-c 941
            |||||||||||| ||||||||||||||||||||||||||||||||| |||||  |||| |
Sbjct: 2454 gaaaaaatccgagggtgtcagcttcacctggcagccctcaggtggg-aaggatgccgtcc 2512

                                              
Query: 942  aggcgtccccca-gcgtgattcctgtggttgcta 974
            |||||||||||| ||||||||||||||| |||||
Sbjct: 2513 aggcgtcccccacgcgtgattcctgtggctgcta 2546


>gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffold487
          Length = 3028

 Score =  276 bits (139), Expect = 2e-71
 Identities = 154/159 (96%)
 Strand = Plus / Minus

                                                                        
Query: 248  gggaaggggctggagtggctggcatatattgatagtagtggtggtagcacctactacgca 307
            ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 2633 gggaaggggctggagtggctggcatatattactagtagtggtggtagcacctactacgca 2574

                                                                        
Query: 308  gactctgtggagggccgattcaccatctccagagacaactcccagaacacggcctatttg 367
            ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 2573 gactctgtgaagggccgattcaccatctccagcgacaactcccagaacacggcctatctg 2514

                                                   
Query: 368  caaatgaacagcctgagaaccgaagacacggcccgctat 406
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 2513 caaatgaacagcctgagaaccgaagacacggcccgctat 2475


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,908,683
Number of extensions: 177
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 3
Length of query: 974
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 953
Effective length of database: 2,808,413,156
Effective search space: 2676417737668
Effective search space used: 2676417737668
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)