Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000397
(1140 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007813.1| ATP synthase subunit s, mitochondrial precur... 71 2e-12
>ref|NP_001007813.1| ATP synthase subunit s, mitochondrial precursor [Bos taurus].
Length = 200
Score = 71.2 bits (173), Expect = 2e-12
Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Frame = +3
Query: 264 GPYVAGAYFVLKQGGAVKFQDNE-WIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQGL 440
GP A + ++L+ G V++ + W + L + K++ +QA+DA+ I G
Sbjct: 46 GPDRAASEWLLRCGAMVRYHGQQRWQKDYNHLPTGPLDKYK---IQAIDATDSCIMSIGF 102
Query: 441 DNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLAD---SLQELSLAGCPRVSERGLACLHHL 611
D+ +C +++D CL RL QL + S+ E+ + C V+++G+ LHH
Sbjct: 103 DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 162
Query: 612 QNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVR 713
+NL+ L +SDLP V + + LP+ E++
Sbjct: 163 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 196
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,903,948
Number of extensions: 1232925
Number of successful extensions: 5756
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5744
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,240,222
Effective search space: 3930301272
Effective search space used: 3930301272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000397
(1140 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541600.2| PREDICTED: similar to Y53G8AR.8 [Canis familiar... 343 1e-94
Alignment gi|XP_547805.2| PREDICTED: similar to ATP synthase subunit s, m... 70 3e-12
>ref|XP_541600.2| PREDICTED: similar to Y53G8AR.8 [Canis familiaris].
Length = 400
Score = 343 bits (881), Expect = 1e-94
Identities = 171/243 (70%), Positives = 197/243 (81%), Gaps = 3/243 (1%)
Frame = +3
Query: 48 LHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKV 221
LH VA N+ T IR LSR PEG+Q+KGR+LLQFLAD F DV+A+REYLLRKQA K+
Sbjct: 151 LHLVAPRWNAGTRGIRGLSRAAAPEGNQKKGRSLLQFLADRFYDVQALREYLLRKQAWKM 210
Query: 222 HRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSG-RGLSSLEFRKFREVPVQ 398
H+KNR FTYI+ERYGPY AGAYF+LK GGAVKFQ EWI+S RG SL+F K + VPV+
Sbjct: 211 HQKNRPFTYIRERYGPYAAGAYFILKLGGAVKFQGKEWIRSNARGHFSLDFLKLQTVPVE 270
Query: 399 AVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPRV 578
AVDASGCA+NYQGLD+ RCPHVDDWCL RLH LA SLQELSLAGCP++
Sbjct: 271 AVDASGCAVNYQGLDSLLALKELQVLWLQRCPHVDDWCLSRLHPLASSLQELSLAGCPKI 330
Query: 579 SERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQ 758
SERGLACLHHLQNLR+LDISDLPAVS+P LTQILVEEMLP+C+V G+DWA+GLK+G EEQ
Sbjct: 331 SERGLACLHHLQNLRKLDISDLPAVSNPGLTQILVEEMLPDCKVVGADWARGLKVGQEEQ 390
Query: 759 SRD 767
+D
Sbjct: 391 YQD 393
>ref|XP_547805.2| PREDICTED: similar to ATP synthase subunit s, mitochondrial
precursor (ATP synthase coupling factor B)
(Mitochondrial ATP synthase regulatory component factor
B) [Canis familiaris].
Length = 200
Score = 70.5 bits (171), Expect = 3e-12
Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Frame = +3
Query: 264 GPYVAGAYFVLKQGGAVKFQDNE-WIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQGL 440
GP A + ++L+ G V++ E W + L + K++ +QA+DA+ I G
Sbjct: 46 GPDRAASEWLLRCGAMVRYHGQERWQKDYNNLPTGPLDKYK---IQAIDATDSCIMSFGF 102
Query: 441 DNXXXXXXXXXXXXXRCPHVDDWCL---GRLHQLADSLQELSLAGCPRVSERGLACLHHL 611
D+ +C +++D CL G+L L S+ E+ + C ++++G+ L+HL
Sbjct: 103 DHLEGLQHVEKIRLCKCHYIEDNCLERLGKLENLQKSILEMEIISCGNITDKGIMALYHL 162
Query: 612 QNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVR 713
+NL+ L +SDLP V + + + LP+ E++
Sbjct: 163 RNLKYLLLSDLPGVREKENLIQIFKTALPSLELK 196
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,752,276
Number of extensions: 1266851
Number of successful extensions: 5989
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5965
Number of HSP's successfully gapped: 2
Length of query: 380
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 276
Effective length of database: 15,407,560
Effective search space: 4252486560
Effective search space used: 4252486560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000397
(1140 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060505.2| ATP synthase subunit s-like protein isoform 4 [... 316 3e-86
Alignment gi|NP_001161339.1| ATP synthase subunit s-like protein isoform ... 311 7e-85
Alignment gi|NP_001161343.1| ATP synthase subunit s-like protein isoform ... 261 6e-70
Alignment gi|NP_001161341.1| ATP synthase subunit s-like protein isoform ... 156 3e-38
Alignment gi|NP_001161340.1| ATP synthase subunit s-like protein isoform ... 152 7e-37
Alignment gi|NP_001161342.1| ATP synthase subunit s-like protein isoform ... 102 7e-22
Alignment gi|NP_001003803.1| ATP synthase subunit s, mitochondrial isofor... 67 4e-11
>ref|NP_060505.2| ATP synthase subunit s-like protein isoform 4 [Homo sapiens].
Length = 257
Score = 316 bits (809), Expect = 3e-86
Identities = 162/250 (64%), Positives = 190/250 (76%), Gaps = 3/250 (1%)
Frame = +3
Query: 27 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 200
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 201 RKQALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGR-GLSSLEFRK 377
+++ KVH KNRS+T++++++GPY AGA+F+LKQGGAVKF+D EWI+ + G S EF
Sbjct: 61 QREMYKVHEKNRSYTWLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWN 120
Query: 378 FREVPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELS 557
F EVPV+AVDA C INY+GLDN RC HVDDWCL RL+ LADSLQELS
Sbjct: 121 FCEVPVEAVDAGDCDINYEGLDNLLRLKELQSLSLQRCCHVDDWCLSRLYPLADSLQELS 180
Query: 558 LAGCPRVSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGL 737
LAGCPR+SERGLACLHHLQNLRRLDISDLPAVS+P LTQILVEEMLPNCEV G DWA+GL
Sbjct: 181 LAGCPRISERGLACLHHLQNLRRLDISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGL 240
Query: 738 KLGLEEQSRD 767
K G EEQ RD
Sbjct: 241 KSGPEEQPRD 250
>ref|NP_001161339.1| ATP synthase subunit s-like protein isoform 1 [Homo sapiens].
Length = 263
Score = 311 bits (797), Expect = 7e-85
Identities = 154/235 (65%), Positives = 182/235 (77%), Gaps = 1/235 (0%)
Frame = +3
Query: 66 NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKVHRKNRSFT 245
N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL+++ KVH KNRS+T
Sbjct: 22 NGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLLQREMYKVHEKNRSYT 81
Query: 246 YIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCA 422
++++++GPY AGA+F+LKQGGAVKF+D EWI+ + G S EF F EVPV+AVDA C
Sbjct: 82 WLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCD 141
Query: 423 INYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACL 602
INY+GLDN RC HVDDWCL RL+ LADSLQELSLAGCPR+SERGLACL
Sbjct: 142 INYEGLDNLLRLKELQSLSLQRCCHVDDWCLSRLYPLADSLQELSLAGCPRISERGLACL 201
Query: 603 HHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 767
HHLQNLRRLDISDLPAVS+P LTQILVEEMLPNCEV G DWA+GLK G EEQ RD
Sbjct: 202 HHLQNLRRLDISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGLKSGPEEQPRD 256
>ref|NP_001161343.1| ATP synthase subunit s-like protein isoform 5 [Homo sapiens].
Length = 230
Score = 261 bits (668), Expect = 6e-70
Identities = 145/250 (58%), Positives = 164/250 (65%), Gaps = 3/250 (1%)
Frame = +3
Query: 27 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 200
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 201 RKQALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGR-GLSSLEFRK 377
+++ KVH KNR F+D EWI+ + G S EF
Sbjct: 61 QREMYKVHEKNR---------------------------FRDKEWIRPDKYGHFSQEFWN 93
Query: 378 FREVPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELS 557
F EVPV+AVDA C INY+GLDN RC HVDDWCL RL+ LADSLQELS
Sbjct: 94 FCEVPVEAVDAGDCDINYEGLDNLLRLKELQSLSLQRCCHVDDWCLSRLYPLADSLQELS 153
Query: 558 LAGCPRVSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGL 737
LAGCPR+SERGLACLHHLQNLRRLDISDLPAVS+P LTQILVEEMLPNCEV G DWA+GL
Sbjct: 154 LAGCPRISERGLACLHHLQNLRRLDISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGL 213
Query: 738 KLGLEEQSRD 767
K G EEQ RD
Sbjct: 214 KSGPEEQPRD 223
>ref|NP_001161341.1| ATP synthase subunit s-like protein isoform 3 [Homo sapiens].
Length = 185
Score = 156 bits (395), Expect = 3e-38
Identities = 83/159 (52%), Positives = 107/159 (67%), Gaps = 3/159 (1%)
Frame = +3
Query: 27 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 200
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 201 RKQALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGR-GLSSLEFRK 377
+++ KVH KNRS+T++++++GPY AGA+F+LKQGGAVKF+D EWI+ + G S EF
Sbjct: 61 QREMYKVHEKNRSYTWLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWN 120
Query: 378 FREVPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCP 494
F EVPV+AVDA C INY+GLDN CP
Sbjct: 121 FCEVPVEAVDAGDCDINYEGLDNLRTSAGWTSRTSLPCP 159
Score = 52.4 bits (124), Expect = 8e-07
Identities = 22/37 (59%), Positives = 23/37 (62%)
Frame = +1
Query: 625 GWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 735
GW S T L CP SLR+WWRRCCP R TG RA
Sbjct: 149 GWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 185
>ref|NP_001161340.1| ATP synthase subunit s-like protein isoform 2 [Homo sapiens].
Length = 191
Score = 152 bits (383), Expect = 7e-37
Identities = 75/144 (52%), Positives = 99/144 (68%), Gaps = 1/144 (0%)
Frame = +3
Query: 66 NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKVHRKNRSFT 245
N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL+++ KVH KNRS+T
Sbjct: 22 NGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLLQREMYKVHEKNRSYT 81
Query: 246 YIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCA 422
++++++GPY AGA+F+LKQGGAVKF+D EWI+ + G S EF F EVPV+AVDA C
Sbjct: 82 WLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCD 141
Query: 423 INYQGLDNXXXXXXXXXXXXXRCP 494
INY+GLDN CP
Sbjct: 142 INYEGLDNLRTSAGWTSRTSLPCP 165
Score = 52.4 bits (124), Expect = 8e-07
Identities = 22/37 (59%), Positives = 23/37 (62%)
Frame = +1
Query: 625 GWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 735
GW S T L CP SLR+WWRRCCP R TG RA
Sbjct: 155 GWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 191
>ref|NP_001161342.1| ATP synthase subunit s-like protein isoform 6 [Homo sapiens].
Length = 158
Score = 102 bits (254), Expect = 7e-22
Identities = 66/159 (41%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Frame = +3
Query: 27 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 200
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 201 RKQALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGR-GLSSLEFRK 377
+++ KVH KNR F+D EWI+ + G S EF
Sbjct: 61 QREMYKVHEKNR---------------------------FRDKEWIRPDKYGHFSQEFWN 93
Query: 378 FREVPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCP 494
F EVPV+AVDA C INY+GLDN CP
Sbjct: 94 FCEVPVEAVDAGDCDINYEGLDNLRTSAGWTSRTSLPCP 132
Score = 52.4 bits (124), Expect = 8e-07
Identities = 22/37 (59%), Positives = 23/37 (62%)
Frame = +1
Query: 625 GWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 735
GW S T L CP SLR+WWRRCCP R TG RA
Sbjct: 122 GWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 158
>ref|NP_001003803.1| ATP synthase subunit s, mitochondrial isoform a precursor [Homo
sapiens].
Length = 215
Score = 66.6 bits (161), Expect = 4e-11
Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Frame = +3
Query: 264 GPYVAGAYFVLKQGGAVKFQDNE-WIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQGL 440
GP A + ++L+ G V++ E W + L + K++ +QA+DA+ I G
Sbjct: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYK---IQAIDATDSCIMSIGF 117
Query: 441 DNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLAD---SLQELSLAGCPRVSERGLACLHHL 611
D+ +C +++D CL RL QL + ++ E+ + C ++++G+ L HL
Sbjct: 118 DHMEGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIISCGNITDKGIIALRHL 177
Query: 612 QNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVR 713
+NL+ L +SDLP V + + LP+ E++
Sbjct: 178 RNLKYLLLSDLPGVREKENLVQAFKTALPSLELK 211
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,907,681
Number of extensions: 1244592
Number of successful extensions: 5550
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5529
Number of HSP's successfully gapped: 10
Length of query: 380
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,868,908
Effective search space: 4103818608
Effective search space used: 4103818608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000397
(1140 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079780.2| ATP synthase subunit s-like protein [Mus muscul... 306 3e-83
Alignment gi|NP_080812.1| ATP synthase subunit s, mitochondrial precursor... 71 2e-12
>ref|NP_079780.2| ATP synthase subunit s-like protein [Mus musculus].
Length = 257
Score = 306 bits (783), Expect = 3e-83
Identities = 159/244 (65%), Positives = 185/244 (75%), Gaps = 4/244 (1%)
Frame = +3
Query: 48 LHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKV 221
LH AR N I +S V P+ S+ K RTLLQFL+DHF D++ +REYLL+KQ KV
Sbjct: 7 LHLGAREWNGRARRIHGMSELVTPDSSREKKRTLLQFLSDHFQDIQTLREYLLQKQISKV 66
Query: 222 HRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNE-WIQ-SGRGLSSLEFRKFREVPV 395
+R+NRSFT I+E+YGPYVAGA F+LKQGGAVKFQD E WI+ + R E +KF+ VPV
Sbjct: 67 NRENRSFTNIQEKYGPYVAGAVFILKQGGAVKFQDKEEWIRPNNRSHFLAEIQKFQNVPV 126
Query: 396 QAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPR 575
+AVDASGCAINYQGL N RCP++DDWCL RL+ LA SLQELSLAGCPR
Sbjct: 127 EAVDASGCAINYQGLSNLLPLKELRSLSLQRCPNLDDWCLSRLYLLAGSLQELSLAGCPR 186
Query: 576 VSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEE 755
+SERGLACLHHLQNLRRLDISDLPAVS P LTQILVEEMLP+CEV G+DWAQ LKL ++
Sbjct: 187 ISERGLACLHHLQNLRRLDISDLPAVSHPGLTQILVEEMLPHCEVLGADWAQNLKLEPDK 246
Query: 756 QSRD 767
Q D
Sbjct: 247 QPPD 250
>ref|NP_080812.1| ATP synthase subunit s, mitochondrial precursor [Mus musculus].
Length = 200
Score = 70.9 bits (172), Expect = 2e-12
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Frame = +3
Query: 264 GPYVAGAYFVLKQGGAVKFQDNE-WIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQGL 440
GP A + ++L+ G V++ ++ W+ L +++ +QA+DA+ I GL
Sbjct: 46 GPDRAASEWLLRCGAKVRYCGHQKWLHDYNTLPGSSIDRYK---IQAIDATDSCIMDIGL 102
Query: 441 DNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLAD---SLQELSLAGCPRVSERGLACLHHL 611
D+ +C +++D CL RL QL + SL EL + C V++ G+ L H
Sbjct: 103 DHMVGLEHVEKITLCKCHYIEDNCLQRLSQLENLRKSLLELEIIACGNVTDNGVIALRHF 162
Query: 612 QNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVR 713
+NL+ L +SDLP V + + + LP+ E++
Sbjct: 163 RNLKYLFLSDLPGVKDKEYLAQVFKTALPSLELK 196
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,892,507
Number of extensions: 1021660
Number of successful extensions: 4816
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4784
Number of HSP's successfully gapped: 2
Length of query: 380
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 277
Effective length of database: 12,523,851
Effective search space: 3469106727
Effective search space used: 3469106727
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000397
(1140 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127203.1| PREDICTED: ATP synthase subunit s-like prote... 428 e-120
Alignment gi|XP_001926371.2| PREDICTED: ATP synthase subunit s, mitochond... 74 1e-13
>ref|XP_003127203.1| PREDICTED: ATP synthase subunit s-like protein-like [Sus scrofa].
Length = 232
Score = 428 bits (1101), Expect = e-120
Identities = 214/227 (94%), Positives = 214/227 (94%)
Frame = +3
Query: 27 MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK 206
MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK
Sbjct: 1 MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK 60
Query: 207 QALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGRGLSSLEFRKFRE 386
QALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGRGLSSLEFRKFRE
Sbjct: 61 QALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGRGLSSLEFRKFRE 120
Query: 387 VPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAG 566
VPVQAVDASGCAINYQGLDN RCPHVDDWCLGRLHQLADSLQELSLAG
Sbjct: 121 VPVQAVDASGCAINYQGLDNLLALKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAG 180
Query: 567 CPRVSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCE 707
CPRVSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCE
Sbjct: 181 CPRVSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCE 227
>ref|XP_001926371.2| PREDICTED: ATP synthase subunit s, mitochondrial-like [Sus scrofa].
Length = 247
Score = 74.3 bits (181), Expect = 1e-13
Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Frame = +3
Query: 264 GPYVAGAYFVLKQGGAVKFQDNE-WIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQGL 440
GP A + ++L+ G V++ E W + L + K++ +QA+DA+ I G
Sbjct: 93 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYK---IQAIDATDSCIMSIGF 149
Query: 441 DNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLAD---SLQELSLAGCPRVSERGLACLHHL 611
D+ +C +++D+CL RL Q+ + S+ E+ + C ++++G+ LHHL
Sbjct: 150 DHMEGLQYVEKIRFCKCHYIEDYCLERLSQIENLQKSMLEMEIISCGNITDKGIIALHHL 209
Query: 612 QNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVR 713
+NL+ L +SDLP V + + LP+ E++
Sbjct: 210 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 243
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,742,625
Number of extensions: 798021
Number of successful extensions: 3599
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3588
Number of HSP's successfully gapped: 2
Length of query: 380
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 279
Effective length of database: 8,829,335
Effective search space: 2463384465
Effective search space used: 2463384465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000397
(1140 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 946 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 946 bits (477), Expect = 0.0
Identities = 504/509 (99%), Gaps = 3/509 (0%)
Strand = Plus / Plus
Query: 614 gaacctccgcaggctggatatctccgaccttcctgctgtgtccagtccggacctcactca 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227790 gaacctccgcaggctggatatctccgaccttcctgctgtgtccagtccggacctcactca 45227849
Query: 674 gattttggtggaggagatgctgcccaactgtgaggttcgggggtctgactgggcccaggg 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227850 gattttggtggaggagatgctgcccaactgtgaggttcgggggtctgactgggcccaggg 45227909
Query: 734 cctcaagttggggctggaggagcagtcccgagacccagccagcagcccggtccctgccta 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227910 cctcaagttggggctggaggagcagtcccgagacccagccagcagcccggtccctgccta 45227969
Query: 794 gcctcagccccctctcagcaggctgacagctacttgtggcctccaccgacgttcactcag 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227970 gcctcagccccctctcagcaggctgacagctacttgtggcctccaccgacgttcactcag 45228029
Query: 854 ccgaagggttgggctgggatgaggggcactggcaggtctataccctgggctgacgttcac 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45228030 ccgaagggttgggctgggatgaggggcactggcaggtctataccctgggctgacgttcac 45228089
Query: 914 aggctgtccacacactcctttctcagttccagggacctccttctcctgcctcctcaggtc 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45228090 aggctgtccacacactcctttctcagttccagggacctccttctcctgcctcctcaggtc 45228149
Query: 974 tagggcttctggctacaagtagctctcccttgtggtttccccacgccacgcccgcctctg 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45228150 tagggcttctggctacaagtagctctcccttgtggtttccccacgccacgcccgcctctg 45228209
Query: 1034 tgtcaggcaacttctcttaacttgtgagatt-acccccctgagtgtgctgccttttcctg 1092
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 45228210 tgtcaggcaacttctcttaacttgtgagattaacccacctgagtgtgctgccttttcctg 45228269
Query: 1093 ctagg-ggggcta-ctgcattgtttgggg 1119
||||| || |||| |||||||||||||||
Sbjct: 45228270 ctaggtggtgctacctgcattgtttgggg 45228298
Score = 946 bits (477), Expect = 0.0
Identities = 504/509 (99%), Gaps = 3/509 (0%)
Strand = Plus / Minus
Query: 614 gaacctccgcaggctggatatctccgaccttcctgctgtgtccagtccggacctcactca 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297596 gaacctccgcaggctggatatctccgaccttcctgctgtgtccagtccggacctcactca 45297537
Query: 674 gattttggtggaggagatgctgcccaactgtgaggttcgggggtctgactgggcccaggg 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297536 gattttggtggaggagatgctgcccaactgtgaggttcgggggtctgactgggcccaggg 45297477
Query: 734 cctcaagttggggctggaggagcagtcccgagacccagccagcagcccggtccctgccta 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297476 cctcaagttggggctggaggagcagtcccgagacccagccagcagcccggtccctgccta 45297417
Query: 794 gcctcagccccctctcagcaggctgacagctacttgtggcctccaccgacgttcactcag 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297416 gcctcagccccctctcagcaggctgacagctacttgtggcctccaccgacgttcactcag 45297357
Query: 854 ccgaagggttgggctgggatgaggggcactggcaggtctataccctgggctgacgttcac 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297356 ccgaagggttgggctgggatgaggggcactggcaggtctataccctgggctgacgttcac 45297297
Query: 914 aggctgtccacacactcctttctcagttccagggacctccttctcctgcctcctcaggtc 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297296 aggctgtccacacactcctttctcagttccagggacctccttctcctgcctcctcaggtc 45297237
Query: 974 tagggcttctggctacaagtagctctcccttgtggtttccccacgccacgcccgcctctg 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297236 tagggcttctggctacaagtagctctcccttgtggtttccccacgccacgcccgcctctg 45297177
Query: 1034 tgtcaggcaacttctcttaacttgtgagatt-acccccctgagtgtgctgccttttcctg 1092
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 45297176 tgtcaggcaacttctcttaacttgtgagattaacccacctgagtgtgctgccttttcctg 45297117
Query: 1093 ctagg-ggggcta-ctgcattgtttgggg 1119
||||| || |||| |||||||||||||||
Sbjct: 45297116 ctaggtggtgctacctgcattgtttgggg 45297088
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 44 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224724 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 45224783
Query: 104 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224784 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 45224843
Query: 164 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224844 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 45224903
Query: 224 ccgaaaaaaccggt 237
||||||||||||||
Sbjct: 45224904 ccgaaaaaaccggt 45224917
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 44 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300663 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 45300604
Query: 104 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300603 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 45300544
Query: 164 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300543 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 45300484
Query: 224 ccgaaaaaaccggt 237
||||||||||||||
Sbjct: 45300483 ccgaaaaaaccggt 45300470
Score = 317 bits (160), Expect = 7e-84
Identities = 163/164 (99%)
Strand = Plus / Plus
Query: 451 tggccctgaaggagctccagtccctgtcgctgcagcgctgtccccacgtggacgactggt 510
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 45227472 tggccctgaaggagctccagtccctgtcactgcagcgctgtccccacgtggacgactggt 45227531
Query: 511 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227532 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 45227591
Query: 571 cccgagtctctgaacgaggcctagcctgcctccaccacctccag 614
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227592 cccgagtctctgaacgaggcctagcctgcctccaccacctccag 45227635
Score = 317 bits (160), Expect = 7e-84
Identities = 163/164 (99%)
Strand = Plus / Minus
Query: 451 tggccctgaaggagctccagtccctgtcgctgcagcgctgtccccacgtggacgactggt 510
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 45297914 tggccctgaaggagctccagtccctgtcactgcagcgctgtccccacgtggacgactggt 45297855
Query: 511 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297854 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 45297795
Query: 571 cccgagtctctgaacgaggcctagcctgcctccaccacctccag 614
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297794 cccgagtctctgaacgaggcctagcctgcctccaccacctccag 45297751
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 317 gtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccggaa 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227250 gtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccggaa 45227309
Query: 377 gttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaagg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227310 gttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaagg 45227369
Query: 437 cctggacaacctct 450
||||||||||||||
Sbjct: 45227370 cctggacaacctct 45227383
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 317 gtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccggaa 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45298136 gtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccggaa 45298077
Query: 377 gttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaagg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45298076 gttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaagg 45298017
Query: 437 cctggacaacctct 450
||||||||||||||
Sbjct: 45298016 cctggacaacctct 45298003
Score = 168 bits (85), Expect = 4e-39
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 235 ggtccttcacctacatcaaggagcgatacggcccatacgtcgcaggcgcctatttcgtcc 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45226530 ggtccttcacctacatcaaggagcgatacggcccatacgtcgcaggcgcctatttcgtcc 45226589
Query: 295 tgaagcagggaggtgcagtcaagtttcaggaca 327
|||||||||||||||||||||||| | ||||||
Sbjct: 45226590 tgaagcagggaggtgcagtcaagtatgaggaca 45226622
Score = 168 bits (85), Expect = 4e-39
Identities = 91/93 (97%)
Strand = Plus / Minus
Query: 235 ggtccttcacctacatcaaggagcgatacggcccatacgtcgcaggcgcctatttcgtcc 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45298856 ggtccttcacctacatcaaggagcgatacggcccatacgtcgcaggcgcctatttcgtcc 45298797
Query: 295 tgaagcagggaggtgcagtcaagtttcaggaca 327
|||||||||||||||||||||||| | ||||||
Sbjct: 45298796 tgaagcagggaggtgcagtcaagtatgaggaca 45298764
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 1 ccttccggttgcttaattccagcaagatggcggcgtccagggcg 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45223439 ccttccggttgcttaattccagcaagatggcggcgtccagggcg 45223482
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 1 ccttccggttgcttaattccagcaagatggcggcgtccagggcg 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45301950 ccttccggttgcttaattccagcaagatggcggcgtccagggcg 45301907
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,319,038
Number of extensions: 174
Number of successful extensions: 174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 12
Length of query: 1140
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1119
Effective length of database: 2,808,413,156
Effective search space: 3142614321564
Effective search space used: 3142614321564
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)