Animal-Genome cDNA 20110601C-000398

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000398
         (1354 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos tauru...   484   e-136
Alignment   gi|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].      473   e-133
Alignment   gi|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].                   470   e-132
Alignment   gi|NP_001099121.1| BOLA class I histocompatibility antigen, alp...   468   e-132
Alignment   gi|NP_001098957.1| hypothetical protein LOC100125916 [Bos tauru...   466   e-131
Alignment   gi|NP_001108327.1| major histocompatibility complex, class I, A...   462   e-130
Alignment   gi|NP_001035644.1| major histocompatibility complex, class I, A...   461   e-130
Alignment   gi|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos tauru...   461   e-130
Alignment   gi|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos ...   460   e-129
Alignment   gi|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taur...   453   e-127

>ref|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos taurus].
          Length = 361

 Score =  484 bits (1245), Expect = e-136
 Identities = 233/308 (75%), Positives = 249/308 (80%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSLRYF T VSRP  GEPRFI VGYVDDTQFVRFDSDA +PR EPR PW++QEG EYW
Sbjct: 25   GSHSLRYFYTGVSRPGLGEPRFIAVGYVDDTQFVRFDSDAADPRTEPRVPWMEQEGPEYW 84

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            D ETRN   +AQTFRVNL T LGYYNQSEAGSHT Q MYGCDV PDG  L GYRQ  YDG
Sbjct: 85   DRETRNLKDAAQTFRVNLNTLLGYYNQSEAGSHTLQWMYGCDVEPDGRFLRGYRQDAYDG 144

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYIALN+DLRSWTAADTAAQITKRKWEAA EAERRR+YL+G CVEWL++YLE GKDTL 
Sbjct: 145  RDYIALNQDLRSWTAADTAAQITKRKWEAAGEAERRRNYLEGRCVEWLRRYLENGKDTLL 204

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RA+PPK HVTRHPSSD  VTLRCWALGFYP+EISLTWQ  G+DQ+QDMELVETRPSGDGT
Sbjct: 205  RADPPKAHVTRHPSSDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDGT 264

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKWAALVVP GEEQ YTC VQHEGL+EPLTLRW+P Q                    +V
Sbjct: 265  FQKWAALVVPSGEEQRYTCRVQHEGLREPLTLRWEPPQ--TSFLTMGIIVGLVVLVVAVV 322

Query: 1302 AGIVIWRK 1325
            AG VIWRK
Sbjct: 323  AGAVIWRK 330


>ref|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].
          Length = 361

 Score =  473 bits (1216), Expect = e-133
 Identities = 230/332 (69%), Positives = 250/332 (75%)
 Frame = +3

Query: 330  MRVRGPXXXXXXXXXXXXXXXXXXGPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRF 509
            MRV GP                  G HS+RYF TAVSRP  GEP+++EVGYVDDTQFVRF
Sbjct: 1    MRVMGPRGLLLLLSGVLVLTGTRAGSHSMRYFSTAVSRPGLGEPQYLEVGYVDDTQFVRF 60

Query: 510  DSDAPNPRMEPRAPWIQQEGQEYWDEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQ 689
            DSDAPNPRMEPRA W++QEG EYWDEET+ A G  Q FRVNL T  GYYNQSEAGSHT Q
Sbjct: 61   DSDAPNPRMEPRARWVKQEGPEYWDEETQRAKGITQVFRVNLNTLRGYYNQSEAGSHTLQ 120

Query: 690  SMYGCDVGPDGLLLHGYRQYGYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAERR 869
             M GCDVGPDG L  G+ Q+GYDG DY+ALNEDLRSWTAADT AQI+KRK EAA  AE  
Sbjct: 121  WMCGCDVGPDGRLRRGFWQFGYDGRDYLALNEDLRSWTAADTGAQISKRKMEAAGAAESG 180

Query: 870  RSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 1049
            R Y++GTCVEWL++YLE GKDTL RA+PPK HVT HP SD  VTLRCWALGFYPKEISLT
Sbjct: 181  RKYVEGTCVEWLRRYLENGKDTLLRADPPKAHVTHHPISDHEVTLRCWALGFYPKEISLT 240

Query: 1050 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 1229
            WQR G+DQ+QDMELVETRPSGDG FQKWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P
Sbjct: 241  WQRNGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEP 300

Query: 1230 AQXXXXXXXXXXXXXXXXXXXTMVAGIVIWRK 1325
             Q                    +VAG VIWRK
Sbjct: 301  PQ--TPFLTVGIIVGLVLLVVAVVAGAVIWRK 330


>ref|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].
          Length = 359

 Score =  470 bits (1210), Expect = e-132
 Identities = 227/308 (73%), Positives = 247/308 (80%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSLRYF TAVSRP  GEPRFI VGYVDDTQFVRFDSDA +PR+EPRA W++QEG EYW
Sbjct: 22   GSHSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAGDPRVEPRARWVEQEGPEYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            D+ETR A   AQ FR+ L T  GYYNQSEAGSHT Q MYGCDVGPDG LL G+ Q+GY+G
Sbjct: 82   DQETRKAKDHAQFFRLGLNTLRGYYNQSEAGSHTLQWMYGCDVGPDGRLLRGFWQFGYEG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYIALNEDLRSWTAADTAAQI+KRKWEAAD AER+R+YL+GTCVEWL +YLE GKDTL 
Sbjct: 142  RDYIALNEDLRSWTAADTAAQISKRKWEAADVAERQRNYLEGTCVEWLPRYLENGKDTLL 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RA+PPK HVT HP S   VTLRCWALGFYP+EISLTWQR G+DQ+QDMELVETRPSGDGT
Sbjct: 202  RADPPKAHVTHHPISGREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKW ALVVP GEEQ YTC VQHEGLQEPLTLRW+P Q                    +V
Sbjct: 262  FQKWVALVVPSGEEQRYTCSVQHEGLQEPLTLRWEPPQ-TSFLTMGIIVGLVLLVTGAVV 320

Query: 1302 AGIVIWRK 1325
            AG VIW K
Sbjct: 321  AGFVIWMK 328


>ref|NP_001099121.1| BOLA class I histocompatibility antigen, alpha chain BL3-6 precursor
            [Bos taurus].
          Length = 360

 Score =  468 bits (1204), Expect = e-132
 Identities = 223/315 (70%), Positives = 247/315 (78%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HS+RYF TAVSRP  GEPR++EVGYVDDTQFVRFDSDA NPRMEPR  W++QEG EYW
Sbjct: 22   GSHSMRYFSTAVSRPGFGEPRYLEVGYVDDTQFVRFDSDARNPRMEPRTRWVKQEGPEYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            D  TRNA G+AQ+FRV L T  GYYNQSEAGSHT Q M GC VGPDG LL G+ QYGYDG
Sbjct: 82   DRNTRNAKGNAQSFRVGLNTLRGYYNQSEAGSHTLQWMSGCYVGPDGRLLRGFMQYGYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DY+ALNEDLRSWTAADT AQITKRKWEA   AE +R+YL+G CVEWL++++E GKDTL 
Sbjct: 142  RDYLALNEDLRSWTAADTEAQITKRKWEAEGYAEVQRNYLEGECVEWLRRHMENGKDTLL 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RA+PPK HVT HP SD  VTLRCWALGFYP+EISLTWQ  G+DQ+QDMELVETRPSGDGT
Sbjct: 202  RADPPKAHVTHHPISDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKWAALVVP GEEQ YTC VQHEGLQEPLTL+W+P Q                    +V
Sbjct: 262  FQKWAALVVPSGEEQKYTCRVQHEGLQEPLTLKWEPPQPSFLTMGIIVGLVLLVVTGAVV 321

Query: 1302 AGIVIWRKNPLR*KR 1346
            AG+VI  K P   KR
Sbjct: 322  AGVVICMKKPSGEKR 336


>ref|NP_001098957.1| hypothetical protein LOC100125916 [Bos taurus].
          Length = 363

 Score =  466 bits (1200), Expect = e-131
 Identities = 226/332 (68%), Positives = 250/332 (75%)
 Frame = +3

Query: 330  MRVRGPXXXXXXXXXXXXXXXXXXGPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRF 509
            MRV GP                  G HSLRYF TAVSRP  GEPRFI VGYVDDTQFVRF
Sbjct: 1    MRVMGPRTLLLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60

Query: 510  DSDAPNPRMEPRAPWIQQEGQEYWDEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQ 689
            DSDAPNPRMEPRA W++QEG EYWD ETRN+  +AQ FRV+L T  GYYNQSEAGSHT Q
Sbjct: 61   DSDAPNPRMEPRARWVEQEGPEYWDRETRNSKDTAQGFRVDLNTLRGYYNQSEAGSHTLQ 120

Query: 690  SMYGCDVGPDGLLLHGYRQYGYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAERR 869
             MYGC VGPDG L  G+ QYGYDG DY+ALNEDLRSWTA +T AQI+KRK EAA  AE++
Sbjct: 121  LMYGCYVGPDGSLRRGFTQYGYDGRDYLALNEDLRSWTAVETMAQISKRKVEAAGVAEKQ 180

Query: 870  RSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 1049
            R+YL+G CVEWL++YLE GKDTL RA+PPK HVTRHP S   VTLRCWALGFYP+EISLT
Sbjct: 181  RNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPISGREVTLRCWALGFYPEEISLT 240

Query: 1050 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 1229
            WQR G+DQ+QDMELVETRPSGDG FQKWAAL+VP GEEQ YTC VQHEGLQEPLTL+W+P
Sbjct: 241  WQRNGEDQTQDMELVETRPSGDGNFQKWAALLVPSGEEQKYTCQVQHEGLQEPLTLKWEP 300

Query: 1230 AQXXXXXXXXXXXXXXXXXXXTMVAGIVIWRK 1325
             Q                    +VAG+VI  K
Sbjct: 301  PQPSFLTMGIIVGLVLLVVTGAVVAGVVICMK 332


>ref|NP_001108327.1| major histocompatibility complex, class I, A [Bos taurus].
          Length = 363

 Score =  462 bits (1190), Expect = e-130
 Identities = 223/308 (72%), Positives = 242/308 (78%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSLRYF TAVSRP  GEPRFI VGYVDDTQFVRFDSDAP+PR+EP A W++QEG EYW
Sbjct: 26   GSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPDPRIEPTARWVEQEGPEYW 85

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
             +ET+    +AQ FRV L T  GYYNQSEAGSHT Q MYGCDVGPDGLL  GY Q+ YDG
Sbjct: 86   HQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQEMYGCDVGPDGLL-RGYDQFAYDG 144

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYIALNEDLRSWTAADTAAQ+TK   EAA +A R R YL+G CVEWL++YL  GKDTL 
Sbjct: 145  RDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARVRIYLEGKCVEWLRRYLVTGKDTLL 204

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RA+PPKTHV  HP SD  VTLRCWALGFYP+EISLTWQR+G+DQ+QDMELVETRPSGDGT
Sbjct: 205  RADPPKTHVAHHPISDREVTLRCWALGFYPEEISLTWQRDGEDQTQDMELVETRPSGDGT 264

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P Q                    MV
Sbjct: 265  FQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQPSIPIMGIIVGLVHLMVTGAMV 324

Query: 1302 AGIVIWRK 1325
             G VIWRK
Sbjct: 325  TGAVIWRK 332


>ref|NP_001035644.1| major histocompatibility complex, class I, A [Bos taurus].
          Length = 362

 Score =  461 bits (1186), Expect = e-130
 Identities = 226/332 (68%), Positives = 246/332 (74%)
 Frame = +3

Query: 330  MRVRGPXXXXXXXXXXXXXXXXXXGPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRF 509
            MRV GP                  G HSLRYF TAVSRP  GEPRFI VGYVDDTQFVRF
Sbjct: 1    MRVVGPRTLLLLLPGALILTETWAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60

Query: 510  DSDAPNPRMEPRAPWIQQEGQEYWDEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQ 689
            DSDAP+PR+EP A W++QEG EYW +ET+    +AQ FRV L T  GYYNQSEAGSHT Q
Sbjct: 61   DSDAPDPRIEPTARWVEQEGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQ 120

Query: 690  SMYGCDVGPDGLLLHGYRQYGYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAERR 869
             MYGCDVGPDGLL  GY Q+ YDG DYIALNEDLRSWTAADTAAQ+TK   EAA +A R 
Sbjct: 121  EMYGCDVGPDGLL-RGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARV 179

Query: 870  RSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 1049
            R YL+G CVEWL++YL  GKDTL RA+PPKTHV  HP SD  VTLRCWALGFYP EISLT
Sbjct: 180  RIYLEGKCVEWLRRYLVTGKDTLLRADPPKTHVAHHPISDHEVTLRCWALGFYPDEISLT 239

Query: 1050 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 1229
            WQR+G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P
Sbjct: 240  WQRDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEP 299

Query: 1230 AQXXXXXXXXXXXXXXXXXXXTMVAGIVIWRK 1325
             Q                    +V G +IWRK
Sbjct: 300  PQPSIPIMGIIVGLVLLMVTGAVVTGAMIWRK 331


>ref|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos taurus].
          Length = 358

 Score =  461 bits (1186), Expect = e-130
 Identities = 224/308 (72%), Positives = 242/308 (78%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSLRYF TAVSRP  GEPRFI VGYVDDTQF RFDSDAPNPR EPR PW++QEG EYW
Sbjct: 22   GSHSLRYFSTAVSRPGLGEPRFIAVGYVDDTQFTRFDSDAPNPREEPRVPWMEQEGLEYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            D  TR    +AQTFRV L    GYYNQSEAGSHT Q M GCDVGPDG LL G+ Q+GYDG
Sbjct: 82   DRNTRIYKDTAQTFRVYLNALRGYYNQSEAGSHTLQWMSGCDVGPDGRLLRGFWQFGYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             +YIALNEDLRSWTAADTAAQITKRKWEAA  AE  R+Y++G CVE L++YLE GKD L 
Sbjct: 142  RNYIALNEDLRSWTAADTAAQITKRKWEAAGAAEGERNYVEGRCVEGLRRYLENGKDALL 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RA+PPK HVT HP S+  VTLRCWALGFYP+EISLTWQREG+DQ+QDMELVETRPSGDGT
Sbjct: 202  RADPPKAHVTHHPISEREVTLRCWALGFYPEEISLTWQREGEDQTQDMELVETRPSGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P Q                    +V
Sbjct: 262  FQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEPPQ--TSFLTMGIIVGLVLLVVAVV 319

Query: 1302 AGIVIWRK 1325
            AG VIWRK
Sbjct: 320  AGAVIWRK 327


>ref|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos taurus].
          Length = 398

 Score =  460 bits (1183), Expect = e-129
 Identities = 224/306 (73%), Positives = 242/306 (79%)
 Frame = +3

Query: 408  HSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYWDE 587
            HSLRYF TAVSRP  GEPRFI VGYVDDT+FVRFDSDAP+PRMEPRA W++QEG EYWD+
Sbjct: 52   HSLRYFYTAVSRPGLGEPRFIIVGYVDDTEFVRFDSDAPDPRMEPRARWVEQEGPEYWDQ 111

Query: 588  ETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDGAD 767
            ETR A  +AQTFR NL +  GYYNQSEAGSHT Q MYGCDVGPDG LL GY QYGYDG D
Sbjct: 112  ETRKAKDAAQTFRANLNSLRGYYNQSEAGSHTLQLMYGCDVGPDGSLLRGYEQYGYDGRD 171

Query: 768  YIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 947
            YIALNEDLRSWTAADTAAQI+KRK EAA +A R R YL G CVE L++YLE GK+TL RA
Sbjct: 172  YIALNEDLRSWTAADTAAQISKRKVEAAGDAARVRIYLGGRCVESLRRYLETGKETLLRA 231

Query: 948  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 1127
            +PPK HVT HP S   VTLRCWALGFYP+EI LTWQ  G+DQ+QDMELVETRP GDG FQ
Sbjct: 232  DPPKAHVTHHPISGREVTLRCWALGFYPEEILLTWQHNGEDQTQDMELVETRPXGDGNFQ 291

Query: 1128 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMVAG 1307
            KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P Q                    +VAG
Sbjct: 292  KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQ--TPFLTMGIIVGLVLLVVAVVAG 349

Query: 1308 IVIWRK 1325
             VIWRK
Sbjct: 350  AVIWRK 355


>ref|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taurus].
          Length = 437

 Score =  453 bits (1166), Expect = e-127
 Identities = 218/337 (64%), Positives = 246/337 (72%)
 Frame = +3

Query: 312  SPQIPKMRVRGPXXXXXXXXXXXXXXXXXXGPHSLRYFDTAVSRPDRGEPRFIEVGYVDD 491
            SPQ  ++RV GP                  G HSL YF T VSRP  GEPRF  VGYVDD
Sbjct: 69   SPQTRRIRVMGPRTLLLLLSEVLVLTETWAGSHSLSYFCTCVSRPGLGEPRFFAVGYVDD 128

Query: 492  TQFVRFDSDAPNPRMEPRAPWIQQEGQEYWDEETRNAMGSAQTFRVNLRTALGYYNQSEA 671
            TQF RFDSDAPNPRMEPRAPW++QEG EYW+  TR+A  + Q  R  L T  G+YNQSEA
Sbjct: 129  TQFARFDSDAPNPRMEPRAPWMEQEGPEYWEAMTRDAKKAQQRLRTGLNTLRGFYNQSEA 188

Query: 672  GSHTFQSMYGCDVGPDGLLLHGYRQYGYDGADYIALNEDLRSWTAADTAAQITKRKWEAA 851
            GSHT Q ++GCDVGP+G LL G  Q  YDGADY+ALNEDLRSWTAA+T AQITKRKWE +
Sbjct: 189  GSHTLQWVFGCDVGPEGRLLRGIWQNAYDGADYLALNEDLRSWTAANTVAQITKRKWETS 248

Query: 852  DEAERRRSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYP 1031
             EAE +R+YL+  CV+WL ++LE GKDTL RA+PPKTHV  HP SD  VTLRCWALGFYP
Sbjct: 249  GEAEFQRNYLEVKCVQWLLRHLETGKDTLLRADPPKTHVAHHPISDREVTLRCWALGFYP 308

Query: 1032 KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 1211
            +EISLTWQ++G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPL
Sbjct: 309  EEISLTWQQDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPL 368

Query: 1212 TLRWDPAQXXXXXXXXXXXXXXXXXXXTMVAGIVIWR 1322
            +LRW P Q                    +V G VIWR
Sbjct: 369  SLRWKPPQPSIPIMGIIVGLVLLMVTGAVVTGAVIWR 405


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,244,340
Number of extensions: 1693583
Number of successful extensions: 12929
Number of sequences better than 1.0e-05: 75
Number of HSP's gapped: 12701
Number of HSP's successfully gapped: 75
Length of query: 451
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 345
Effective length of database: 14,174,046
Effective search space: 4890045870
Effective search space used: 4890045870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000398
         (1354 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].      451   e-127
Alignment   gi|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].      443   e-124
Alignment   gi|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].      428   e-120
Alignment   gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].          376   e-104
Alignment   gi|NP_001018646.1| MHC class Ib [Canis lupus familiaris].            376   e-104
Alignment   gi|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein...   206   4e-53
Alignment   gi|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large s...   133   3e-31
Alignment   gi|NP_001014403.1| major histocompatibility complex, class II, ...    72   2e-12
Alignment   gi|XP_850173.1| PREDICTED: similar to T-cell surface glycoprote...    71   2e-12
Alignment   gi|XP_860822.1| PREDICTED: similar to T-cell surface glycoprote...    71   2e-12

>ref|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].
          Length = 361

 Score =  451 bits (1161), Expect = e-127
 Identities = 216/308 (70%), Positives = 244/308 (79%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSLRYF T+VSRP RG+PRFI VGYVDDTQFVRFDSDA   RMEPRAPW++QEG EYW
Sbjct: 25   GSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQEGPEYW 84

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            D ETR    +AQ +RV+L T  GYYNQSEAGSHT Q+MYGCD+GP G LL GY Q  YDG
Sbjct: 85   DRETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDG 144

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
            ADYIALNEDLRSWTAADTAAQIT+RKWEAA  AE  R+YL+ TCVEWL++YLEMGK+TL 
Sbjct: 145  ADYIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMGKETLL 204

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RAEPP T VTRHP SD  VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGT
Sbjct: 205  RAEPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGT 264

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+                    + V
Sbjct: 265  FQKWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPS--PLSTIVIVSIAALVLLVVSGV 322

Query: 1302 AGIVIWRK 1325
             G VIWRK
Sbjct: 323  IGAVIWRK 330


>ref|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].
          Length = 358

 Score =  443 bits (1140), Expect = e-124
 Identities = 213/308 (69%), Positives = 242/308 (78%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSLRYF T+VSRP RG+PRFI VGYVDDTQFVRFDSDA   RMEPRAPW++QEG EYW
Sbjct: 22   GSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWVEQEGPEYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            D +TR    +A+TFRV+L T  GYYNQSEAGSHTFQ M+GCD+GP G LL GY Q  YDG
Sbjct: 82   DPQTRTIKETARTFRVDLDTLRGYYNQSEAGSHTFQWMFGCDLGPGGRLLRGYSQDAYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
            ADYIALNEDLRSWTAAD AAQIT+RK EAA +A   R+YL+ TCVEWL++YLEMGK+TL 
Sbjct: 142  ADYIALNEDLRSWTAADAAAQITRRKREAAGDAGHLRNYLETTCVEWLRRYLEMGKETLL 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RAEPP T VTRHP SD  VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGT
Sbjct: 202  RAEPPSTRVTRHPVSDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+                      V
Sbjct: 262  FQKWAAVVVPSGQEQRYTCHVQHEGLVEPVTRRWEPSPLSTIVIVSIAALVLLVVAG--V 319

Query: 1302 AGIVIWRK 1325
             G VIWRK
Sbjct: 320  IGAVIWRK 327


>ref|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].
          Length = 361

 Score =  428 bits (1100), Expect = e-120
 Identities = 204/308 (66%), Positives = 240/308 (77%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSLR+F TAVSRP RG+P +I VGYVDDTQF+RF+SDA +P++EPRA W++QEG E+W
Sbjct: 25   GSHSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASPKVEPRARWMEQEGPEFW 84

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            +E+T  A   AQT R NL+TALGYYNQSEAGSHTFQ   GCDVGPDG LL GY Q+ YDG
Sbjct: 85   EEQTEIAKVHAQTSRSNLQTALGYYNQSEAGSHTFQWTSGCDVGPDGRLLRGYEQFAYDG 144

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
            ADY+AL+EDLRSWTAAD AAQIT+RKWEAA  A+  R YLQG CV+ L KYLE GK+TLQ
Sbjct: 145  ADYLALDEDLRSWTAADAAAQITRRKWEAAGAAQYYRVYLQGECVQSLLKYLERGKETLQ 204

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
              +PPK ++TRHP SD  VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGT
Sbjct: 205  LTDPPKIYLTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGT 264

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+                      V
Sbjct: 265  FQKWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPSPLSTIVIVSIAALVLLVVAG--V 322

Query: 1302 AGIVIWRK 1325
             G VIWRK
Sbjct: 323  IGAVIWRK 330


>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].
          Length = 381

 Score =  376 bits (966), Expect = e-104
 Identities = 177/310 (57%), Positives = 219/310 (70%), Gaps = 2/310 (0%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSLR+ +T VSRP  GEPR   V YVDDT F RF+S+    R EP   W++QEG EYW
Sbjct: 30   GSHSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYW 89

Query: 582  DEETRNAMGSAQTFRVNLR-TALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYD 758
            +E T N+    Q  R  L   +  Y NQS  GSHTFQ++ GCDVGPDG  L GY+++ YD
Sbjct: 90   EERTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYD 149

Query: 759  GADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTL 938
            G DYI L+EDLRSW   D  AQIT+RKW+AA  AE R+++L+G C+EWL+++LE G++TL
Sbjct: 150  GLDYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETL 209

Query: 939  QRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDG 1118
            QRA+PPKT VTR P S+  VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDG
Sbjct: 210  QRADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDG 269

Query: 1119 TFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PAQXXXXXXXXXXXXXXXXXXXT 1295
            TFQKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ P Q                    
Sbjct: 270  TFQKWAAVVVPSGEEQRYTCHILHKSLPKPITLRWEPPPQSTIPIVSIIAGLVLLVITGA 329

Query: 1296 MVAGIVIWRK 1325
            M+ G+VIWRK
Sbjct: 330  MLVGVVIWRK 339


>ref|NP_001018646.1| MHC class Ib [Canis lupus familiaris].
          Length = 381

 Score =  376 bits (966), Expect = e-104
 Identities = 177/310 (57%), Positives = 219/310 (70%), Gaps = 2/310 (0%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSLR+ +T VSRP  GEPR   V YVDDT F RF+S+    R EP   W++QEG EYW
Sbjct: 30   GSHSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYW 89

Query: 582  DEETRNAMGSAQTFRVNLR-TALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYD 758
            +E T N+    Q  R  L   +  Y NQS  GSHTFQ++ GCDVGPDG  L GY+++ YD
Sbjct: 90   EERTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYD 149

Query: 759  GADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTL 938
            G DYI L+EDLRSW   D  AQIT+RKW+AA  AE R+++L+G C+EWL+++LE G++TL
Sbjct: 150  GLDYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETL 209

Query: 939  QRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDG 1118
            QRA+PPKT VTR P S+  VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDG
Sbjct: 210  QRADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDG 269

Query: 1119 TFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PAQXXXXXXXXXXXXXXXXXXXT 1295
            TFQKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ P Q                    
Sbjct: 270  TFQKWAAVVVPSGEEQRYTCHILHKSLTKPITLRWEPPPQSTIPIVSIIAGLVLLVITGA 329

Query: 1296 MVAGIVIWRK 1325
            M+ G+VIWRK
Sbjct: 330  MLVGVVIWRK 339


>ref|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor
            (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis
            familiaris].
          Length = 315

 Score =  206 bits (524), Expect = 4e-53
 Identities = 108/281 (38%), Positives = 156/281 (55%), Gaps = 3/281 (1%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            GP+SL +F T +SRP  G P F    Y++D  F  +DS+    +  PR PW Q EG E W
Sbjct: 26   GPYSLSFFYTGLSRPSDGFPSFQATAYLNDQDFFHYDSETG--KAIPRYPWSQMEGIEDW 83

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            ++E++        F V L+  + YY   E GSHTFQ M+GC++  +      + +Y YDG
Sbjct: 84   EKESKLQKAREDIFMVTLKDIMEYYKDKE-GSHTFQGMFGCEL-QNNKNSGAFWRYAYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADE-AERRRSYLQGTCVEWLQKYLEMGKDTL 938
             ++I  N+++ +W   D AA  TK+KWEA +   +R ++YL+  C   LQ+YLE GK  L
Sbjct: 142  RNFIEFNKEIPAWVPQDPAALNTKKKWEAEEVYVQRAKAYLEEECPVMLQRYLEYGKTYL 201

Query: 939  QRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDG 1118
             R EPP   +T H + +   TL+CW  GFYP+EI L W  +  D  +        PSG+ 
Sbjct: 202  DRQEPPSVSITSHGTPEGIQTLKCWVSGFYPQEIDLHW-IQADDTQETKSGGALLPSGNN 260

Query: 1119 TFQKWAALVVPPGE--EQSYTCHVQHEGLQEPLTLRWDPAQ 1235
            T+Q W  +   P +    SY+C V+H  L +PLT+ WD  Q
Sbjct: 261  TYQAWVVMSASPQDLASFSYSCLVKHSSLSQPLTVLWDKRQ 301


>ref|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor
            (FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor
            transporter, alpha chain) [Canis familiaris].
          Length = 354

 Score =  133 bits (335), Expect = 3e-31
 Identities = 82/271 (30%), Positives = 133/271 (49%), Gaps = 2/271 (0%)
 Frame = +3

Query: 411  SLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWI-QQEGQEYWDE 587
            SL Y  TAVS P  G P F   G++   Q++ +++     + EP   W+ + +   YW++
Sbjct: 28   SLLYHLTAVSAPPPGTPAFWASGWLGPQQYLSYNN--LRAQAEPYGAWVWENQVSWYWEK 85

Query: 588  ETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDGAD 767
            ET +       F   L+ ALG     + G +T Q + GC++GPD   +    ++  +G D
Sbjct: 86   ETTDLRTKEGLFLEALK-ALG-----DGGPYTLQGLLGCELGPDNTSVP-VAKFALNGED 138

Query: 768  YIALNEDLRSWTAADTAAQITKRKW-EAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQR 944
            ++  +  L +W       +   ++W + A    + R++L  +C + L  +LE G+  L+ 
Sbjct: 139  FMTFDPKLGTWNGDWPETETVSKRWMQQAGAVSKERTFLLYSCPQRLLGHLERGRGNLEW 198

Query: 945  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 1124
             EPP   +   P S     L C A  FYP E+ L + R G          +  P+GDG+F
Sbjct: 199  KEPPSMRLKARPGSPGFSVLTCSAFSFYPPELQLRFLRNGLAAGSGEG--DFGPNGDGSF 256

Query: 1125 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1217
              W++L V  G+E  Y C VQH GL +PLT+
Sbjct: 257  HAWSSLTVKSGDEHHYRCLVQHAGLPQPLTV 287


>ref|NP_001014403.1| major histocompatibility complex, class II, DQ beta 1 [Canis lupus
            familiaris].
          Length = 269

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 8/168 (4%)
 Frame = +3

Query: 744  QYGYDGADYIALNEDLRSWTAADTAAQITKRKWEAA-DEAERRRSYLQGTCVEWLQKYLE 920
            +Y Y+  +++  + D+  + A     +     W    DE +R R+ L   C      Y  
Sbjct: 61   KYIYNREEFVRFDSDVGEFRAVTELGRPDAEYWNRQKDEMDRVRAELDTVC---RHNYGR 117

Query: 921  MGKDTLQRAEPP-------KTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQ 1079
                TLQR   P       KT V  H +      L C    FYP +I + W R  Q+Q+ 
Sbjct: 118  EELTTLQRRVEPTVTIFPSKTEVLNHHN-----LLVCSVTDFYPGQIKVRWFRNDQEQTA 172

Query: 1080 DMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 1223
             +       +GD TFQ    L + P     YTCHV+H  LQ P+T++W
Sbjct: 173  GVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHASLQSPITVQW 220


>ref|XP_850173.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
            (CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
            thymocyte antigen) isoform 1 [Canis familiaris].
          Length = 357

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 65/259 (25%), Positives = 106/259 (40%), Gaps = 10/259 (3%)
 Frame = +3

Query: 480  YVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYWDEETRNAMGSAQTFRVN-LRTALGYY 656
            ++DD Q   +D+   N     R PW Q       D      M + Q F  N +   L Y+
Sbjct: 49   WLDDVQIHAWDNK--NRTFVFRWPWAQG------DLSNEERMEADQLFYSNYIFYNLVYH 100

Query: 657  NQSEAGSHTFQSMYGCDVGPD---GLLLHGYRQYGYDGADYIALNEDLRSWTAA----DT 815
            +        +      ++G +   G    G+ +Y Y G D I       SW  +      
Sbjct: 101  DHVSQWQLEYPFQVQMEIGCELRIGEPFSGFMRYAYQGTDLIRFQNT--SWRPSPKGGSR 158

Query: 816  AAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLG 995
            A Q +    +  ++ E     + G C  ++   L++GK  LQR   P+  ++  PS   G
Sbjct: 159  AQQASSVFNQYHEDNEFTHELITGYCPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPGPG 218

Query: 996  -VTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSY 1172
             + L C   GFYPK + + W R G+ + Q  +  +  P  DGT+    +L V   E    
Sbjct: 219  RLQLVCHVSGFYPKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAAGL 277

Query: 1173 TCHVQHEGL-QEPLTLRWD 1226
            +C V+H  L  + + L W+
Sbjct: 278  SCRVRHSSLGGQDMVLHWE 296


>ref|XP_860822.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
            (CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
            thymocyte antigen) isoform 2 [Canis familiaris].
          Length = 352

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 65/259 (25%), Positives = 106/259 (40%), Gaps = 10/259 (3%)
 Frame = +3

Query: 480  YVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYWDEETRNAMGSAQTFRVN-LRTALGYY 656
            ++DD Q   +D+   N     R PW Q       D      M + Q F  N +   L Y+
Sbjct: 44   WLDDVQIHAWDNK--NRTFVFRWPWAQG------DLSNEERMEADQLFYSNYIFYNLVYH 95

Query: 657  NQSEAGSHTFQSMYGCDVGPD---GLLLHGYRQYGYDGADYIALNEDLRSWTAA----DT 815
            +        +      ++G +   G    G+ +Y Y G D I       SW  +      
Sbjct: 96   DHVSQWQLEYPFQVQMEIGCELRIGEPFSGFMRYAYQGTDLIRFQNT--SWRPSPKGGSR 153

Query: 816  AAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLG 995
            A Q +    +  ++ E     + G C  ++   L++GK  LQR   P+  ++  PS   G
Sbjct: 154  AQQASSVFNQYHEDNEFTHELITGYCPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPGPG 213

Query: 996  -VTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSY 1172
             + L C   GFYPK + + W R G+ + Q  +  +  P  DGT+    +L V   E    
Sbjct: 214  RLQLVCHVSGFYPKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAAGL 272

Query: 1173 TCHVQHEGL-QEPLTLRWD 1226
            +C V+H  L  + + L W+
Sbjct: 273  SCRVRHSSLGGQDMVLHWE 291


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,613,716
Number of extensions: 1755364
Number of successful extensions: 13538
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 13336
Number of HSP's successfully gapped: 32
Length of query: 451
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 345
Effective length of database: 15,340,888
Effective search space: 5292606360
Effective search space used: 5292606360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000398
         (1354 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005505.2| major histocompatibility complex, class I, B pr...   458   e-129
Alignment   gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp...   458   e-129
Alignment   gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1...   456   e-128
Alignment   gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al...   450   e-126
Alignment   gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c...   449   e-126
Alignment   gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ...   447   e-125
Alignment   gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c...   441   e-123
Alignment   gi|NP_001091949.1| HLA class I histocompatibility antigen, alph...   419   e-117
Alignment   gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c...   419   e-117
Alignment   gi|NP_001091948.1| HLA class I histocompatibility antigen, alph...   261   1e-69

>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
            sapiens].
          Length = 362

 Score =  458 bits (1179), Expect = e-129
 Identities = 213/277 (76%), Positives = 237/277 (85%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HS+RYF T+VSRP RGEPRFI VGYVDDTQFVRFDSDA +PR EPRAPWI+QEG EYW
Sbjct: 25   GSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYW 84

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            D  T+     AQT R +LR   GYYNQSEAGSHT QSMYGCDVGPDG LL G+ QY YDG
Sbjct: 85   DRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHDQYAYDG 144

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYIALNEDLRSWTAADTAAQIT+RKWEAA EAE+RR+YL+G CVEWL++YLE GKD L+
Sbjct: 145  KDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENGKDKLE 204

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RA+PPKTHVT HP SD   TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GD T
Sbjct: 205  RADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRT 264

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 1232
            FQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+P+
Sbjct: 265  FQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPS 301


>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
            [Homo sapiens].
          Length = 365

 Score =  458 bits (1178), Expect = e-129
 Identities = 213/275 (77%), Positives = 235/275 (85%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HS+RYF T+VSRP RGEPRFI VGYVDDTQFVRFDSDA + RMEPRAPWI+QEG EYW
Sbjct: 25   GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYW 84

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            D+ETRN    +QT RV+L T  GYYNQSEAGSHT Q MYGCDVG DG  L GYRQ  YDG
Sbjct: 85   DQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDG 144

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYIALNEDLRSWTAAD AAQITKRKWEAA EAE+ R+YL GTCVEWL++YLE GK+TLQ
Sbjct: 145  KDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQ 204

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            R +PPKTH+T HP SD   TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGT
Sbjct: 205  RTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 264

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 1226
            FQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+
Sbjct: 265  FQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE 299


>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
            [Homo sapiens].
          Length = 366

 Score =  456 bits (1173), Expect = e-128
 Identities = 212/275 (77%), Positives = 236/275 (85%)
 Frame = +3

Query: 408  HSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYWDE 587
            HS+RYFDTAVSRP RGEPRFI VGYVDDTQFVRFDSDA +PR EPRAPW++QEG EYWD 
Sbjct: 27   HSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDR 86

Query: 588  ETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDGAD 767
            ET+N    AQ  RV+LR   GYYNQSE GSHT Q MYGCD+GPDG LL GY Q  YDG D
Sbjct: 87   ETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQRMYGCDLGPDGRLLRGYDQSAYDGKD 146

Query: 768  YIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 947
            YIALNEDLRSWTAADTAAQIT+RK EAA  AE+ R+YL+GTCVEWL++YLE GK+TLQRA
Sbjct: 147  YIALNEDLRSWTAADTAAQITQRKLEAARAAEQLRAYLEGTCVEWLRRYLENGKETLQRA 206

Query: 948  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 1127
            EPPKTHVT HP SD   TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207  EPPKTHVTHHPLSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266

Query: 1128 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 1232
            KWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P+
Sbjct: 267  KWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEPS 301


>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
            [Homo sapiens].
          Length = 366

 Score =  450 bits (1158), Expect = e-126
 Identities = 210/275 (76%), Positives = 234/275 (85%)
 Frame = +3

Query: 408  HSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYWDE 587
            HS+RYFDTAVSRP RGEPRFI VGYVDDTQFVRFDSDA +PR EPRAPW++QEG EYWD 
Sbjct: 27   HSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDR 86

Query: 588  ETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDGAD 767
            ET+     AQ  RV+LR   GYYNQSE GSHT Q M GCD+GPDG LL GY Q  YDG D
Sbjct: 87   ETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQRMSGCDLGPDGRLLRGYDQSAYDGKD 146

Query: 768  YIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 947
            YIALNEDLRSWTAADTAAQIT+RK EAA  AE+ R+YL+GTCVEWL++YLE GK+TLQRA
Sbjct: 147  YIALNEDLRSWTAADTAAQITQRKLEAARAAEQLRAYLEGTCVEWLRRYLENGKETLQRA 206

Query: 948  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 1127
            EPPKTHVT HP SD   TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207  EPPKTHVTHHPLSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266

Query: 1128 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 1232
            KWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P+
Sbjct: 267  KWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEPS 301


>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor [Homo
            sapiens].
          Length = 338

 Score =  449 bits (1155), Expect = e-126
 Identities = 208/274 (75%), Positives = 232/274 (84%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HS+RYF  AVSRP RGEPRFI +GYVDDTQFVRFDSD+  PRMEPRAPW++QEG EYW
Sbjct: 25   GSHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSACPRMEPRAPWVEQEGPEYW 84

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            +EETRN    AQT R+NL+T  GYYNQSEA SHT Q M GCD+G DG LL GY QY YDG
Sbjct: 85   EEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGSDGRLLRGYEQYAYDG 144

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DY+ALNEDLRSWTAADTAAQI+KRK EAA+ AE+RR+YL+GTCVEWL +YLE GK+ LQ
Sbjct: 145  KDYLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRAYLEGTCVEWLHRYLENGKEMLQ 204

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RA+PPKTHVT HP  D   TLRCWALGFYP EI LTWQR+G+DQ+QD+ELVETRP+GDGT
Sbjct: 205  RADPPKTHVTHHPVFDYEATLRCWALGFYPAEIILTWQRDGEDQTQDVELVETRPAGDGT 264

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 1223
            FQKWAA+VVP GEEQ YTCHVQHEGL EPL LRW
Sbjct: 265  FQKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRW 298


>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
            [Homo sapiens].
          Length = 365

 Score =  447 bits (1150), Expect = e-125
 Identities = 208/275 (75%), Positives = 231/275 (84%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HS+RYF T+VSRP RGEPRFI VGYVDDTQFVRFDSDA + +MEPRAPWI+QEG EYW
Sbjct: 25   GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYW 84

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            D+ETRN    +QT R NL T  GYYNQSE GSHT Q MYGCDVGPDG  L GYRQ  YDG
Sbjct: 85   DQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDG 144

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYIALNEDLRSWTAAD AAQITKRKWEA   AE+RR YL+G CV+ L++YLE GK+TLQ
Sbjct: 145  KDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQ 204

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            R +PPKTH+T HP SD   TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGT
Sbjct: 205  RTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 264

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 1226
            FQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+
Sbjct: 265  FQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE 299


>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor [Homo
            sapiens].
          Length = 358

 Score =  441 bits (1133), Expect = e-123
 Identities = 202/277 (72%), Positives = 230/277 (83%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSL+YF T+VSRP RGEPRFI VGYVDDTQFVRFD+DA +PRM PRAPW++QEG EYW
Sbjct: 22   GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            D ETR+A  +AQ FRVNLRT  GYYNQSEAGSHT Q M+GC++GPDG  L GY Q+ YDG
Sbjct: 82   DRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DY+ LNEDLRSWTA DTAAQI+++K   A EAE +R+YL+ TCVEWL KYLE GK+TL 
Sbjct: 142  KDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLL 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
              EPPKTHVT HP SD   TLRCWALGFYP EI+LTWQ++G+  +QD ELVETRP+GDGT
Sbjct: 202  HLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 1232
            FQKWAA+VVP GEEQ YTCHVQHEGL EP+TLRW PA
Sbjct: 262  FQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPA 298


>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
            precursor [Homo sapiens].
          Length = 442

 Score =  419 bits (1078), Expect = e-117
 Identities = 196/275 (71%), Positives = 225/275 (81%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSLRYF TAVSRP RGEPR+I V YVDDTQF+RFDSDA  PRMEPR PW++QEG +YW
Sbjct: 22   GSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            +  T  A  +AQT RV LR  L  YNQSEAGSHT Q M GCD+GPDG LL GY Q+ YDG
Sbjct: 82   EWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYI+LNEDLRSWTAADT AQIT+R +EA + AE  R+YL+G C+E L++YLE GK+TLQ
Sbjct: 142  KDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQ 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RA+PPK HV  HP SD   TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGT
Sbjct: 202  RADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 1226
            FQKWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+
Sbjct: 262  FQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWE 296


>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
            precursor [Homo sapiens].
          Length = 346

 Score =  419 bits (1078), Expect = e-117
 Identities = 196/275 (71%), Positives = 225/275 (81%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSLRYF TAVSRP RGEPR+I V YVDDTQF+RFDSDA  PRMEPR PW++QEG +YW
Sbjct: 22   GSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            +  T  A  +AQT RV LR  L  YNQSEAGSHT Q M GCD+GPDG LL GY Q+ YDG
Sbjct: 82   EWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYI+LNEDLRSWTAADT AQIT+R +EA + AE  R+YL+G C+E L++YLE GK+TLQ
Sbjct: 142  KDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQ 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RA+PPK HV  HP SD   TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGT
Sbjct: 202  RADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 1226
            FQKWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+
Sbjct: 262  FQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWE 296


>ref|NP_001091948.1| HLA class I histocompatibility antigen, alpha chain F isoform 3
           precursor [Homo sapiens].
          Length = 254

 Score =  261 bits (666), Expect = 1e-69
 Identities = 126/183 (68%), Positives = 145/183 (79%)
 Frame = +3

Query: 402 GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
           G HSLRYF TAVSRP RGEPR+I V YVDDTQF+RFDSDA  PRMEPR PW++QEG +YW
Sbjct: 22  GSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYW 81

Query: 582 DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
           +  T  A  +AQT RV LR  L  YNQSEAGSHT Q M GCD+GPDG LL GY Q+ YDG
Sbjct: 82  EWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDG 141

Query: 762 ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
            DYI+LNEDLRSWTAADT AQIT+R +EA + AE  R+YL+G C+E L++YLE GK+TLQ
Sbjct: 142 KDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQ 201

Query: 942 RAE 950
           RAE
Sbjct: 202 RAE 204


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,151,418
Number of extensions: 1686031
Number of successful extensions: 12100
Number of sequences better than 1.0e-05: 76
Number of HSP's gapped: 11889
Number of HSP's successfully gapped: 79
Length of query: 451
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 345
Effective length of database: 14,802,980
Effective search space: 5107028100
Effective search space used: 5107028100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000398
         (1354 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alp...   434   e-122
Alignment   gi|XP_003086103.1| PREDICTED: h-2 class I histocompatibility an...   431   e-121
Alignment   gi|XP_001473590.1| PREDICTED: h-2 class I histocompatibility an...   431   e-121
Alignment   gi|XP_003086102.1| PREDICTED: h-2 class I histocompatibility an...   431   e-121
Alignment   gi|XP_001473611.1| PREDICTED: h-2 class I histocompatibility an...   431   e-121
Alignment   gi|NP_034528.1| H-2 class I histocompatibility antigen, D-37 al...   429   e-120
Alignment   gi|XP_003086104.1| PREDICTED: h-2 class I histocompatibility an...   429   e-120
Alignment   gi|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].    425   e-119
Alignment   gi|NP_001001892.2| H-2 class I histocompatibility antigen, K-W2...   422   e-118
Alignment   gi|XP_003086847.1| PREDICTED: h-2 class I histocompatibility an...   421   e-118

>ref|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alpha chain precursor
            [Mus musculus].
          Length = 325

 Score =  434 bits (1116), Expect = e-122
 Identities = 198/276 (71%), Positives = 230/276 (83%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HS+RYF+T+VSRP  GEPRFI VGYVDDTQFVRFDSDA  PRMEPRAPW++QEG EYW
Sbjct: 25   GSHSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAPWMEQEGPEYW 84

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            + ET+ A G+ Q+F V+LRT LGYYNQSE+GSHT Q MYGC VG DG  L GY QY YDG
Sbjct: 85   ERETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQYAYDG 144

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYIALNEDL++WTAAD AA IT+RKWE A  AE  R+YL+  CVEWL +YLE+GK+TL 
Sbjct: 145  RDYIALNEDLKTWTAADVAAIITRRKWEQAGAAEYYRAYLEAECVEWLLRYLELGKETLL 204

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            R +PPKTHVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGT
Sbjct: 205  RTDPPKTHVTHHPGSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT 264

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 1229
            FQKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P
Sbjct: 265  FQKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEP 300


>ref|XP_003086103.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
            chain-like [Mus musculus].
          Length = 380

 Score =  431 bits (1108), Expect = e-121
 Identities = 197/274 (71%), Positives = 229/274 (83%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            GPHSLRYF TAVSRP  GEPRFI VGYVDDTQFVRFDSDA NPR EPRAPW++QEG EYW
Sbjct: 34   GPHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYW 93

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            +E+T+ A    Q FRV+LRTA  YYNQS+ GSHTFQ M+GCDVG D  LL GY+Q+ YDG
Sbjct: 94   EEQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDG 153

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYIALNEDL++WTAADTAA IT+RKWE A +AE  R+YL+G CVEWL++YLE+G +TL 
Sbjct: 154  RDYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLL 213

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            R + PK HVT HP S + VTLRCWALGFYP +I+LTWQ  G+D ++DMELVETRP+GDGT
Sbjct: 214  RTDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGT 273

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 1223
            FQKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW
Sbjct: 274  FQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRW 307


>ref|XP_001473590.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
            chain-like isoform 1 [Mus musculus].
          Length = 385

 Score =  431 bits (1108), Expect = e-121
 Identities = 197/274 (71%), Positives = 229/274 (83%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            GPHSLRYF TAVSRP  GEPRFI VGYVDDTQFVRFDSDA NPR EPRAPW++QEG EYW
Sbjct: 39   GPHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYW 98

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            +E+T+ A    Q FRV+LRTA  YYNQS+ GSHTFQ M+GCDVG D  LL GY+Q+ YDG
Sbjct: 99   EEQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDG 158

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYIALNEDL++WTAADTAA IT+RKWE A +AE  R+YL+G CVEWL++YLE+G +TL 
Sbjct: 159  RDYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLL 218

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            R + PK HVT HP S + VTLRCWALGFYP +I+LTWQ  G+D ++DMELVETRP+GDGT
Sbjct: 219  RTDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGT 278

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 1223
            FQKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW
Sbjct: 279  FQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRW 312


>ref|XP_003086102.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
            chain-like [Mus musculus].
          Length = 370

 Score =  431 bits (1108), Expect = e-121
 Identities = 197/274 (71%), Positives = 229/274 (83%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            GPHSLRYF TAVSRP  GEPRFI VGYVDDTQFVRFDSDA NPR EPRAPW++QEG EYW
Sbjct: 22   GPHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            +E+T+ A    Q FRV+LRTA  YYNQS+ GSHTFQ M+GCDVG D  LL GY+Q+ YDG
Sbjct: 82   EEQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYIALNEDL++WTAADTAA IT+RKWE A +AE  R+YL+G CVEWL++YLE+G +TL 
Sbjct: 142  RDYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLL 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            R + PK HVT HP S + VTLRCWALGFYP +I+LTWQ  G+D ++DMELVETRP+GDGT
Sbjct: 202  RTDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 1223
            FQKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW
Sbjct: 262  FQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRW 295


>ref|XP_001473611.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
            chain-like isoform 2 [Mus musculus].
          Length = 368

 Score =  431 bits (1108), Expect = e-121
 Identities = 197/274 (71%), Positives = 229/274 (83%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            GPHSLRYF TAVSRP  GEPRFI VGYVDDTQFVRFDSDA NPR EPRAPW++QEG EYW
Sbjct: 22   GPHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            +E+T+ A    Q FRV+LRTA  YYNQS+ GSHTFQ M+GCDVG D  LL GY+Q+ YDG
Sbjct: 82   EEQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYIALNEDL++WTAADTAA IT+RKWE A +AE  R+YL+G CVEWL++YLE+G +TL 
Sbjct: 142  RDYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLL 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            R + PK HVT HP S + VTLRCWALGFYP +I+LTWQ  G+D ++DMELVETRP+GDGT
Sbjct: 202  RTDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 1223
            FQKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW
Sbjct: 262  FQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRW 295


>ref|NP_034528.1| H-2 class I histocompatibility antigen, D-37 alpha chain precursor
            [Mus musculus].
          Length = 357

 Score =  429 bits (1104), Expect = e-120
 Identities = 201/275 (73%), Positives = 225/275 (81%)
 Frame = +3

Query: 405  PHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYWD 584
            PHSLRYF TAVSRP  GEPRFI VGYVDDTQFVRFDSDA NPRMEPRA WI+QEG EYW+
Sbjct: 22   PHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRARWIEQEGPEYWE 81

Query: 585  EETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDGA 764
             ET  A    + FRVNLRT LGYYNQS   SHT Q MYGCDVGPDG LL GY Q  YDG 
Sbjct: 82   RETWKARDMGRNFRVNLRTLLGYYNQSNDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQ 141

Query: 765  DYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQR 944
            DYI+LNEDLRSWTA D A+QI+K K EA DEA ++R+YLQG CVEWL +YL +G +TLQR
Sbjct: 142  DYISLNEDLRSWTANDIASQISKHKSEAVDEAHQQRAYLQGPCVEWLHRYLRLGNETLQR 201

Query: 945  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 1124
            ++PPK HVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTF
Sbjct: 202  SDPPKAHVTHHPRSEDEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 261

Query: 1125 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 1229
            QKWAA+VVP G+EQ YTCHV HEGL EPLTLRW+P
Sbjct: 262  QKWAAVVVPLGKEQYYTCHVYHEGLPEPLTLRWEP 296


>ref|XP_003086104.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
            chain-like [Mus musculus].
          Length = 370

 Score =  429 bits (1102), Expect = e-120
 Identities = 196/273 (71%), Positives = 228/273 (83%)
 Frame = +3

Query: 405  PHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYWD 584
            PHSLRYF TAVSRP  GEPRFI VGYVDDTQFVRFDSDA NPR EPRAPW++QEG EYW+
Sbjct: 25   PHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWE 84

Query: 585  EETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDGA 764
            E+T+ A    Q FRV+LRTA  YYNQS+ GSHTFQ M+GCDVG D  LL GY+Q+ YDG 
Sbjct: 85   EQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDGR 144

Query: 765  DYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQR 944
            DYIALNEDL++WTAADTAA IT+RKWE A +AE  R+YL+G CVEWL++YLE+G +TL R
Sbjct: 145  DYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLR 204

Query: 945  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 1124
             + PK HVT HP S + VTLRCWALGFYP +I+LTWQ  G+D ++DMELVETRP+GDGTF
Sbjct: 205  TDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGTF 264

Query: 1125 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 1223
            QKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW
Sbjct: 265  QKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRW 297


>ref|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].
          Length = 368

 Score =  425 bits (1093), Expect = e-119
 Identities = 192/276 (69%), Positives = 228/276 (82%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            GPHS+RYF+TAVSRP  GEP FI VGYVDDTQFVRFD DA NPRMEPRAPW++QEG EYW
Sbjct: 26   GPHSMRYFETAVSRPGLGEPWFISVGYVDDTQFVRFDGDAENPRMEPRAPWMEQEGPEYW 85

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            + ET+ A G  Q F+ +LR  L YYNQS  GSHTFQ MYGCD+G DG LL GY Q+ YDG
Sbjct: 86   ERETQIAKGHEQGFQGSLRNLLHYYNQSAGGSHTFQRMYGCDLGSDGRLLRGYWQFAYDG 145

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
            +DYIALN+DL++WTAAD AAQIT+R+WE    AE  R+YL+  C+EWL++YLE+GK+TL 
Sbjct: 146  SDYIALNQDLKTWTAADLAAQITRRRWEQGGVAETLRAYLEDPCLEWLRRYLELGKETLL 205

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            R +PPK HVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGT
Sbjct: 206  RTDPPKVHVTHHPRSEDDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT 265

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 1229
            FQKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P
Sbjct: 266  FQKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEP 301


>ref|NP_001001892.2| H-2 class I histocompatibility antigen, K-W28 alpha chain isoform 1
            [Mus musculus].
          Length = 369

 Score =  422 bits (1085), Expect = e-118
 Identities = 194/276 (70%), Positives = 227/276 (82%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            GPHSLRYF TAVSRP  GEPR++EVGYVDDT+FVRFDSDA NPR EPRA W++QEG EYW
Sbjct: 22   GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            + ET+ A G+ Q+FRV+LRT LGYYNQS+ GSHT Q + GC+VG DG LL GY+QY YDG
Sbjct: 82   ERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYIALNEDL++WTAAD AA ITK KWE A EAER R+YL+GTCVEWL++YL+ G  TL 
Sbjct: 142  CDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLL 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            R + PK HVT H   +  VTLRCWALGFYP +I+LTWQ  G++  QDMELVETRP+GDGT
Sbjct: 202  RTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 1229
            FQKWA++VVP G+EQ YTCHV H+GL EPLTLRW+P
Sbjct: 262  FQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRWEP 297


>ref|XP_003086847.1| PREDICTED: h-2 class I histocompatibility antigen, D-37 alpha
            chain-like [Mus musculus].
          Length = 377

 Score =  421 bits (1081), Expect = e-118
 Identities = 195/274 (71%), Positives = 224/274 (81%)
 Frame = +3

Query: 408  HSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYWDE 587
            HSLRYF T VSRP  GEPRFI VGYVDDTQFVRFDSD+ NPRMEPRA WI+QEG EYW+ 
Sbjct: 42   HSLRYFHTVVSRPGLGEPRFIIVGYVDDTQFVRFDSDSENPRMEPRARWIEQEGPEYWER 101

Query: 588  ETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDGAD 767
            ETR A    + FRVNLRT LGYYNQS+  SHT Q MYGCDVGPDG LL GY Q  YDG D
Sbjct: 102  ETRKARDMGRNFRVNLRTLLGYYNQSKDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQD 161

Query: 768  YIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 947
            YI+LNEDLRSWTA + A+ I+K K EA DEA ++R+YLQG CVEWL  YL++G +TL R+
Sbjct: 162  YISLNEDLRSWTATNLASHISKCKSEAVDEAHQQRAYLQGPCVEWLHTYLQLGSETLLRS 221

Query: 948  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 1127
            +PPK HVTRHP  +  VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTFQ
Sbjct: 222  DPPKAHVTRHPRPEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 281

Query: 1128 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 1229
            KWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P
Sbjct: 282  KWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEP 315


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,147,540
Number of extensions: 1372787
Number of successful extensions: 9697
Number of sequences better than 1.0e-05: 131
Number of HSP's gapped: 9534
Number of HSP's successfully gapped: 137
Length of query: 451
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 346
Effective length of database: 12,463,779
Effective search space: 4312467534
Effective search space used: 4312467534
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000398
         (1354 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].               556   e-159
Alignment   gi|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].               546   e-155
Alignment   gi|XP_003128290.1| PREDICTED: patr class I histocompatibility a...   523   e-149
Alignment   gi|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].               523   e-149
Alignment   gi|XP_003356639.1| PREDICTED: patr class I histocompatibility a...   518   e-147
Alignment   gi|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].               498   e-141
Alignment   gi|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].               446   e-125
Alignment   gi|NP_998933.1| MHC class I antigen 7 [Sus scrofa].                  440   e-123
Alignment   gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].               410   e-114
Alignment   gi|XP_003361021.1| PREDICTED: class I histocompatibility antige...   263   2e-70

>ref|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].
          Length = 361

 Score =  556 bits (1434), Expect = e-159
 Identities = 264/308 (85%), Positives = 272/308 (88%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            GPHSLRYFDTAVSRPDRG+PRFI VGYVDDTQFVRFDSDAPNPRMEPRAPWI+QEGQEYW
Sbjct: 22   GPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            DEETRNAMGSAQTFRVNL    GYYNQSEAGSHT QSMYGCDVGPD L L GY Q  YDG
Sbjct: 82   DEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
            ADYIALNEDLRSWTAADTAAQITKRKWEAADEAE+ RSYL+G CVEWLQKYL+MG +TLQ
Sbjct: 142  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQ 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT
Sbjct: 202  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q                    +V
Sbjct: 262  FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQPPVPIVGIIVGLVLVLVAGAVV 321

Query: 1302 AGIVIWRK 1325
            AG+VIWRK
Sbjct: 322  AGVVIWRK 329


>ref|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].
          Length = 364

 Score =  546 bits (1407), Expect = e-155
 Identities = 267/332 (80%), Positives = 271/332 (81%)
 Frame = +3

Query: 330  MRVRGPXXXXXXXXXXXXXXXXXXGPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRF 509
            MRVRGP                  GPHSL YF TAVSRPDRG+ RFI VGYVDDTQFVRF
Sbjct: 1    MRVRGPQAILILLSGALALTGTWAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 60

Query: 510  DSDAPNPRMEPRAPWIQQEGQEYWDEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQ 689
            DSDAPNPRMEPRAPWIQQEGQ+YWD ETRN MGSAQT RVNL+T  GYYNQSEAGSHT Q
Sbjct: 61   DSDAPNPRMEPRAPWIQQEGQDYWDRETRNVMGSAQTDRVNLKTLRGYYNQSEAGSHTIQ 120

Query: 690  SMYGCDVGPDGLLLHGYRQYGYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAERR 869
             MYGCDVGPDGLLL GYRQ  YDGADYIALNEDLRSWTAADTAAQITKRKWEAAD AE  
Sbjct: 121  VMYGCDVGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADAAEGE 180

Query: 870  RSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 1049
            RSYLQG CVE LQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT
Sbjct: 181  RSYLQGLCVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 240

Query: 1050 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 1229
            WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEG QEP TLRWDP
Sbjct: 241  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGPQEPRTLRWDP 300

Query: 1230 AQXXXXXXXXXXXXXXXXXXXTMVAGIVIWRK 1325
             Q                    MV G+VIWRK
Sbjct: 301  PQPPIPIVGIIVGLVLVLVAGAMVTGVVIWRK 332


>ref|XP_003128290.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
            chain-like [Sus scrofa].
          Length = 361

 Score =  523 bits (1348), Expect(2) = e-149
 Identities = 251/308 (81%), Positives = 263/308 (85%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            GPHSL YF TAVSRPDRG+ RFI VGYVDDTQFVRFD+ APNPRMEPR PWIQQEGQ+YW
Sbjct: 22   GPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            DEETR    +AQT+ V L T  GYYNQSEAGSHT QSM+GC +GPDGLLLHGYRQ  YDG
Sbjct: 82   DEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
            ADYIALNEDLRSWTAAD AAQI+KRKWEAAD AE  RSYLQG CVE L++YLEMGKDTLQ
Sbjct: 142  ADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQ 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT
Sbjct: 202  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ                    +V
Sbjct: 262  FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVV 321

Query: 1302 AGIVIWRK 1325
            AG+VIWRK
Sbjct: 322  AGVVIWRK 329



 Score = 24.3 bits (51), Expect(2) = e-149
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 1324 KTRSGEKGGS 1353
            KTRSGEKGGS
Sbjct: 329  KTRSGEKGGS 338


>ref|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].
          Length = 361

 Score =  523 bits (1348), Expect = e-149
 Identities = 252/308 (81%), Positives = 267/308 (86%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            GPHSL YF TAVSRPD G+ RFIEVGYVDDTQFVRFDSDA NPRMEPRAPWI++EGQ+YW
Sbjct: 22   GPHSLSYFYTAVSRPDLGDSRFIEVGYVDDTQFVRFDSDALNPRMEPRAPWIEKEGQDYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            DEETR    +AQ  RV+L+T  GYYNQSEAGSHT QSM+GC +GPDGLLL GYRQ  YDG
Sbjct: 82   DEETRKVKETAQINRVDLKTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLRGYRQDAYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
            ADYIALNEDLRSWTAADTAAQITKRKWEAADEAE+ RSYLQG CVE L++YLEMGKDTLQ
Sbjct: 142  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQWRSYLQGLCVESLREYLEMGKDTLQ 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RA+PPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT
Sbjct: 202  RADPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ                    +V
Sbjct: 262  FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVV 321

Query: 1302 AGIVIWRK 1325
            AG+VIWRK
Sbjct: 322  AGVVIWRK 329


>ref|XP_003356639.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
            chain-like [Sus scrofa].
          Length = 361

 Score =  518 bits (1333), Expect = e-147
 Identities = 249/308 (80%), Positives = 262/308 (85%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            GPHSL YF TAVSRPDRG+ RF  VGYVDDTQFVRFDSDAPN +MEPRA WI+QEG EYW
Sbjct: 22   GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIKQEGPEYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            D ET+ +  +AQT+RV L+T  GYYNQSEAGSHT Q MYGC +GPDGLLL GYRQ  YDG
Sbjct: 82   DRETQISKETAQTYRVGLKTLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYRQDAYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
            ADY+ALNEDLRSWTAADTAAQITKRKWEAADEAE  RSYLQG CVE L+KYLEMGKDTLQ
Sbjct: 142  ADYLALNEDLRSWTAADTAAQITKRKWEAADEAEGERSYLQGLCVESLRKYLEMGKDTLQ 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT
Sbjct: 202  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q                    +V
Sbjct: 262  FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQTPVPIVGIIVGLVLVLVAGAVV 321

Query: 1302 AGIVIWRK 1325
            AG+VIWRK
Sbjct: 322  AGVVIWRK 329


>ref|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].
          Length = 361

 Score =  498 bits (1283), Expect = e-141
 Identities = 243/307 (79%), Positives = 254/307 (82%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            GPHSL Y  T+VSRP RGEPRFI VG VDDT  VRFDSDA  PR EPRA WI+QEG EYW
Sbjct: 22   GPHSLSYLFTSVSRPGRGEPRFIAVGCVDDTPLVRFDSDARKPRKEPRAWWIEQEGPEYW 81

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            DEETR +  +AQT R NL T  GYYNQSEA SHT QS++GCDVGPD LLL  YRQ  YDG
Sbjct: 82   DEETRISKDNAQTLRGNLNTLRGYYNQSEARSHTIQSLFGCDVGPDRLLLRRYRQDAYDG 141

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
            ADY+ALNEDLRSWTAADTAAQITKRKWE A+ AE+ RSYLQG CVE LQKYLEMG+DTLQ
Sbjct: 142  ADYLALNEDLRSWTAADTAAQITKRKWETANVAEQERSYLQGLCVEGLQKYLEMGEDTLQ 201

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT
Sbjct: 202  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 261

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ                    MV
Sbjct: 262  FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQTPVPMVGIIVGLVLVLVAGAMV 321

Query: 1302 AGIVIWR 1322
            AG+VIWR
Sbjct: 322  AGVVIWR 328


>ref|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].
          Length = 355

 Score =  446 bits (1148), Expect = e-125
 Identities = 205/278 (73%), Positives = 234/278 (84%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HS+RYF T VSRP  GEPR++EVGYVDDTQFVRFDS+A NPRMEPRAPW++QEGQEYW
Sbjct: 20   GSHSMRYFHTVVSRPGYGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYW 79

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            DEET+      Q FR NL    GYYNQSE GSHTFQ  YGC+ G  G  LH + QY YDG
Sbjct: 80   DEETQRVKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHVHWQYAYDG 139

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYI LNEDL SWTAAD AA++T+RKW+ +   ER +SYL+GTCVEWL++YLE G++ LQ
Sbjct: 140  EDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQ 199

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RA+PPK +VT HPSSD  VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRPSGDGT
Sbjct: 200  RADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDGT 259

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 1235
            FQKWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P++
Sbjct: 260  FQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSR 297


>ref|NP_998933.1| MHC class I antigen 7 [Sus scrofa].
          Length = 401

 Score =  440 bits (1131), Expect = e-123
 Identities = 211/307 (68%), Positives = 237/307 (77%)
 Frame = +3

Query: 405  PHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYWD 584
            PHSLRYF TAVSRP R +PRF  VGYVDDTQFVRFDS+APNPR EPR PW++ EG E  D
Sbjct: 23   PHSLRYFYTAVSRPSRRDPRFSVVGYVDDTQFVRFDSNAPNPREEPRTPWVELEGPECCD 82

Query: 585  EETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDGA 764
              TR    ++Q F+V+L    GYYNQSEAGSHT+Q + GC V  DG LL GY Q+ YDGA
Sbjct: 83   RNTRIYKDTSQNFQVSLNVLRGYYNQSEAGSHTYQWLCGCYVARDGRLLRGYSQFAYDGA 142

Query: 765  DYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQR 944
            DYI LNEDLRSWTA   AAQIT+RKWE    AE+ R+YL+  CV+ L +YL  GK+TLQR
Sbjct: 143  DYIVLNEDLRSWTAVGMAAQITRRKWEEETVAEQSRAYLEVACVQSLHRYLANGKETLQR 202

Query: 945  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 1124
            ++PPKTHVTRHPSSD  VTLRCWALGFYPKEISLTWQ+EGQDQSQD+E+VETRPSGDGTF
Sbjct: 203  SDPPKTHVTRHPSSDNKVTLRCWALGFYPKEISLTWQQEGQDQSQDVEVVETRPSGDGTF 262

Query: 1125 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMVA 1304
            +KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q                    +V 
Sbjct: 263  RKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQPPVPIVGIIVGLVLVLVTGAVVT 322

Query: 1305 GIVIWRK 1325
            G+VIWRK
Sbjct: 323  GVVIWRK 329


>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
          Length = 369

 Score =  410 bits (1053), Expect = e-114
 Identities = 198/308 (64%), Positives = 226/308 (73%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSLRY    VSRP  G   +  VG++DDTQFVRF SDA NPR+EPRAPW++QEG+EYW
Sbjct: 50   GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 109

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            D +T  A   ++  R NLR  +G +N S++ SH+F  + GCDVG +G +L GY Q+ YDG
Sbjct: 110  DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSEGRILRGYEQFSYDG 169

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAADEAERRRSYLQGTCVEWLQKYLEMGKDTLQ 941
             DYI LNEDLRSWTA  T AQI +RKWEA   AE+ R+YL+  CVEWL+KYLE GKD LQ
Sbjct: 170  DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 229

Query: 942  RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 1121
            RA PPKTHVTRHP  D  VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVETRPSGDGT
Sbjct: 230  RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETRPSGDGT 289

Query: 1122 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQXXXXXXXXXXXXXXXXXXXTMV 1301
            FQKWAALVVP GEEQSYTC VQHEGLQEPLTLRW+P                       V
Sbjct: 290  FQKWAALVVPSGEEQSYTCQVQHEGLQEPLTLRWEP---PPLSLNLIMICIAVSVLVVTV 346

Query: 1302 AGIVIWRK 1325
             G VIWRK
Sbjct: 347  LGTVIWRK 354


>ref|XP_003361021.1| PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102
            alpha chain-like [Sus scrofa].
          Length = 374

 Score =  263 bits (672), Expect = 2e-70
 Identities = 129/276 (46%), Positives = 178/276 (64%), Gaps = 1/276 (0%)
 Frame = +3

Query: 402  GPHSLRYFDTAVSRPDRGEPRFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQEYW 581
            G HSLRY   A+S P  G P+F+ VGYVDD  F+R+DS     + EP+APW+     +YW
Sbjct: 40   GTHSLRYHYLALSEPGPGLPQFLAVGYVDDQVFIRYDSR--RGKAEPQAPWMAHMDAQYW 97

Query: 582  DEETRNAMGSAQTFRVNLRTALGYYNQSEAGSHTFQSMYGCDVGPDGLLLHGYRQYGYDG 761
            ++ET+     A+  +V + T +GYYNQS +G H+ Q M+GC++  DG    G+ Q+G+DG
Sbjct: 98   EKETKKQRIWAKVQQVEMWTVMGYYNQS-SGMHSTQRMFGCEIQEDGHST-GFWQFGFDG 155

Query: 762  ADYIALNEDLRSWTAADTAAQITKRKWEAAD-EAERRRSYLQGTCVEWLQKYLEMGKDTL 938
             D+++L+ +  SW +A+  A  TKR WE     AE  ++Y++G C+  L+KYLE+G    
Sbjct: 156  QDHLSLDLETLSWVSAEPVAVRTKRWWETERCYAEYDKAYVEGVCLTSLRKYLELGGQRF 215

Query: 939  QRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDG 1118
             R EPP   VT+H + D G TLRCWALGFYP++ISL+W    ++ +   E VETRPSGDG
Sbjct: 216  SRREPPTVRVTKHTAQDGGTTLRCWALGFYPQDISLSWWLGEKELTSKTEYVETRPSGDG 275

Query: 1119 TFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 1226
            T+Q W A  VP GEE  YTCHVQH  L   LT+ W+
Sbjct: 276  TYQTWLATQVPAGEEIQYTCHVQHSSLNHTLTVTWE 311


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,134,434
Number of extensions: 1104464
Number of successful extensions: 8357
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 8178
Number of HSP's successfully gapped: 41
Length of query: 451
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 349
Effective length of database: 8,804,438
Effective search space: 3072748862
Effective search space used: 3072748862
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000398
         (1354 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                         597   e-168
Sscrofa_Chr07                                                         537   e-150
gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22   186   2e-44

>Sscrofa_Chr14 
||          Length = 153851969

 Score =  597 bits (301), Expect = e-168
 Identities = 301/301 (100%)
 Strand = Plus / Minus

                                                                            
Query: 3        ggaacttccaggcggggctcccgggagggacgccgcggcgggtctggcaaccgggcccag 62
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33251966 ggaacttccaggcggggctcccgggagggacgccgcggcgggtctggcaaccgggcccag 33251907

                                                                            
Query: 63       tgcgcggagcaggctggcggcggaggcagtggggccatggcgggctgctgcgcggtactg 122
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33251906 tgcgcggagcaggctggcggcggaggcagtggggccatggcgggctgctgcgcggtactg 33251847

                                                                            
Query: 123      tatgccttcctgttcgagtatgacacgccccgcatcgtgctcatccgcagccgtaaagtg 182
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33251846 tatgccttcctgttcgagtatgacacgccccgcatcgtgctcatccgcagccgtaaagtg 33251787

                                                                            
Query: 183      gggctcatgaaccgcatggtgcagctgctcatcctagcctatgtcatcgggtgagcgagg 242
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33251786 gggctcatgaaccgcatggtgcagctgctcatcctagcctatgtcatcgggtgagcgagg 33251727

                                                                            
Query: 243      cagggggcggagggaagggggtgacccggtggccgggaactcccccatctgggtcccagc 302
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33251726 cagggggcggagggaagggggtgacccggtggccgggaactcccccatctgggtcccagc 33251667

                 
Query: 303      t 303
                |
Sbjct: 33251666 t 33251666


>Sscrofa_Chr07 
||          Length = 134764511

 Score =  537 bits (271), Expect = e-150
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                            
Query: 946      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 1005
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685333 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24685274

                                                                            
Query: 1006     ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 1065
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24685273 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24685214

                                                                            
Query: 1066     aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 1125
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685213 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24685154

                                                                            
Query: 1126     agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 1185
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685153 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24685094

                                                       
Query: 1186     agcacgagggcctgcaggagccactcaccctgagatggg 1224
                |||||||||||||||||||||| ||||||||||||||||
Sbjct: 24685093 agcacgagggcctgcaggagcccctcaccctgagatggg 24685055



 Score =  529 bits (267), Expect = e-147
 Identities = 276/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 946      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 1005
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675878 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 26675819

                                                                            
Query: 1006     ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 1065
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 26675818 ggtgctgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggcc 26675759

                                                                            
Query: 1066     aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 1125
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675758 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 26675699

                                                                            
Query: 1126     agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 1185
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675698 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 26675639

                                                       
Query: 1186     agcacgagggcctgcaggagccactcaccctgagatggg 1224
                |||||||||||||||||||||| ||||||||||||||||
Sbjct: 26675638 agcacgagggcctgcaggagcccctcaccctgagatggg 26675600



 Score =  521 bits (263), Expect = e-145
 Identities = 275/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 946      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 1005
                |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 24643497 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 24643438

                                                                            
Query: 1006     ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 1065
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643437 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 24643378

                                                                            
Query: 1066     aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 1125
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643377 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 24643318

                                                                            
Query: 1126     agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 1185
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643317 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24643258

                                                       
Query: 1186     agcacgagggcctgcaggagccactcaccctgagatggg 1224
                |||||||||||||||||||||| ||||||||||||||||
Sbjct: 24643257 agcacgagggcctgcaggagcccctcaccctgagatggg 24643219



 Score =  521 bits (263), Expect = e-145
 Identities = 275/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 946      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 1005
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706186 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24706127

                                                                            
Query: 1006     ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 1065
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24706126 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24706067

                                                                            
Query: 1066     aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 1125
                ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706066 aggaccagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttcc 24706007

                                                                            
Query: 1126     agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 1185
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706006 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24705947

                                                       
Query: 1186     agcacgagggcctgcaggagccactcaccctgagatggg 1224
                |||||||||||||||||||||| ||||||||||||||||
Sbjct: 24705946 agcacgagggcctgcaggagcccctcaccctgagatggg 24705908



 Score =  513 bits (259), Expect = e-143
 Identities = 274/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 946      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 1005
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24749848 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 24749789

                                                                            
Query: 1006     ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 1065
                |||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 24749788 ggtgctgggctctgggcttccaccctaaggagatctccctgacctggcagcgggagggcc 24749729

                                                                            
Query: 1066     aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 1125
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749728 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24749669

                                                                            
Query: 1126     agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 1185
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749668 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24749609

                                                       
Query: 1186     agcacgagggcctgcaggagccactcaccctgagatggg 1224
                |||||||||||||||||||||| ||||||||||||||||
Sbjct: 24749608 agcacgagggcctgcaggagcccctcaccctgagatggg 24749570



 Score =  498 bits (251), Expect = e-138
 Identities = 273/279 (97%), Gaps = 1/279 (0%)
 Strand = Plus / Minus

                                                                            
Query: 946      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 1005
                ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 24657273 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttga 24657214

                                                                            
Query: 1006     ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 1065
                |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 24657213 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggc 24657154

                                                                            
Query: 1066     aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 1125
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 24657153 aggaccagagccaggacatggagctggtggagaccaggccctca-gggatgggaccttcc 24657095

                                                                            
Query: 1126     agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 1185
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24657094 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24657035

                                                       
Query: 1186     agcacgagggcctgcaggagccactcaccctgagatggg 1224
                |||||||||||||||||||||| ||||||||||||||||
Sbjct: 24657034 agcacgagggcctgcaggagcccctcaccctgagatggg 24656996



 Score =  498 bits (251), Expect = e-138
 Identities = 272/279 (97%)
 Strand = Plus / Minus

                                                                            
Query: 946      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 1005
                ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||
Sbjct: 24722401 cagagcctccaaagacacatgtgacccactaccccagctctgacctgggggtcaccctga 24722342

                                                                            
Query: 1006     ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 1065
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24722341 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24722282

                                                                            
Query: 1066     aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 1125
                | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722281 aagaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24722222

                                                                            
Query: 1126     agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 1185
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722221 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24722162

                                                       
Query: 1186     agcacgagggcctgcaggagccactcaccctgagatggg 1224
                |||||||||||||||||||||| ||||||||||||||||
Sbjct: 24722161 agcacgagggcctgcaggagcccctcaccctgagatggg 24722123



 Score =  438 bits (221), Expect = e-120
 Identities = 263/277 (94%)
 Strand = Plus / Minus

                                                                            
Query: 672      gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 731
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644365 gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 24644306

                                                                            
Query: 732      cacgggtaccgtcagtatggctacgacggcgccgattacatcgccctgaacgaggacctg 791
                | ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644305 cgcgggtacagtcagtttggctacgacggcgccgattacatcgccctgaacgaggacctg 24644246

                                                                            
Query: 792      cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagtgggaggcggcc 851
                |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 24644245 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 24644186

                                                                            
Query: 852      gatgaggcggagcgtaggaggagctacctgcagggcacgtgtgtggagtggctccagaaa 911
                |||| ||||||||  | ||| ||||||||| ||||| ||||||||| |||||||||||||
Sbjct: 24644185 gatgcggcggagcaaatgagaagctacctggagggcgcgtgtgtggtgtggctccagaaa 24644126

                                                     
Query: 912      tacctggagatggggaaggacacgctgcagcgcgcag 948
                |||||||||||||||||  ||||||||||||||||||
Sbjct: 24644125 tacctggagatggggaataacacgctgcagcgcgcag 24644089



 Score =  434 bits (219), Expect = e-119
 Identities = 264/279 (94%)
 Strand = Plus / Plus

                                                                            
Query: 946      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 1005
                |||| |||||||||||||||||||||||||||||||||||||||      ||||||||||
Sbjct: 27616062 cagatcctccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttga 27616121

                                                                            
Query: 1006     ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 1065
                |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |
Sbjct: 27616122 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggc 27616181

                                                                            
Query: 1066     aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 1125
                ||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 27616182 aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 27616241

                                                                            
Query: 1126     agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 1185
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616242 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 27616301

                                                       
Query: 1186     agcacgagggcctgcaggagccactcaccctgagatggg 1224
                |||||||||||||||||||||| ||||||||||||||||
Sbjct: 27616302 agcacgagggcctgcaggagcccctcaccctgagatggg 27616340



 Score =  412 bits (208), Expect = e-112
 Identities = 259/272 (95%), Gaps = 3/272 (1%)
 Strand = Plus / Minus

                                                                            
Query: 403      gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagcccc 462
                ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 24644858 gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagcccc 24644799

                                                                            
Query: 463      gtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 522
                ||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644798 gtt-catctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 24644740

                                                                            
Query: 523      cgaatccgcggatggagcctcgggcgccgtggatacagcaggaggggcaggagtattggg 582
                ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 24644739 cgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattggg 24644680

                                                                            
Query: 583      atgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgcgcacag 642
                |||||||||||||||||||||||||||||||||||||||||||||||||||||  || | 
Sbjct: 24644679 atgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaaca-ac 24644621

                                                
Query: 643      ct-ctcggctactacaaccagagcgaggccgg 673
                || | |||||||||||||||||||||||||||
Sbjct: 24644620 ctgcgcggctactacaaccagagcgaggccgg 24644589



 Score =  394 bits (199), Expect = e-107
 Identities = 253/271 (93%)
 Strand = Plus / Minus

                                                                            
Query: 954      ccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgctgg 1013
                |||||| || |||||||| |||||||||||||||||      |||||| |||||||||||
Sbjct: 27628600 ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 27628541

                                                                            
Query: 1014     gccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggaccag 1073
                |||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct: 27628540 gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 27628481

                                                                            
Query: 1074     agccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaagtgg 1133
                ||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27628480 agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 27628421

                                                                            
Query: 1134     gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 1193
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 27628420 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 27628361

                                               
Query: 1194     ggcctgcaggagccactcaccctgagatggg 1224
                |||||||||||||||||||||||||||||||
Sbjct: 27628360 ggcctgcaggagccactcaccctgagatggg 27628330



 Score =  365 bits (184), Expect = 4e-98
 Identities = 250/272 (91%)
 Strand = Plus / Minus

                                                                            
Query: 402      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 461
                ||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 24627128 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 24627069

                                                                            
Query: 462      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 521
                || |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24627068 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24627009

                                                                            
Query: 522      ccgaatccgcggatggagcctcgggcgccgtggatacagcaggaggggcaggagtattgg 581
                || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 24627008 cccaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggactattgg 24626949

                                                                            
Query: 582      gatgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgcgcaca 641
                |||  |||||||||||||| |||||||||||||||||||  |||||||||||||   || 
Sbjct: 24626948 gatcgggagacgcggaacgtcatgggcagcgcacagactgaccgagtgaacctgaagacc 24626889

                                                
Query: 642      gctctcggctactacaaccagagcgaggccgg 673
                   | |||||||||||||||||||||||||||
Sbjct: 24626888 ctgcgcggctactacaaccagagcgaggccgg 24626857



 Score =  365 bits (184), Expect = 4e-98
 Identities = 250/272 (91%)
 Strand = Plus / Minus

                                                                            
Query: 402      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 461
                ||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||  ||
Sbjct: 24751227 ggtccccactccctgagctatttcttcaccgccgtgtcccggcccgaccgcggggactcc 24751168

                                                                            
Query: 462      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 521
                || |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24751167 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24751108

                                                                            
Query: 522      ccgaatccgcggatggagcctcgggcgccgtggatacagcaggaggggcaggagtattgg 581
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 24751107 ccgaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggagtattgg 24751048

                                                                            
Query: 582      gatgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgcgcaca 641
                ||||||||||||||||||||||||| || |||||||| |  |||||||||||||   || 
Sbjct: 24751047 gatgaggagacgcggaacgccatggacaacgcacagattaaccgagtgaacctgaagacc 24750988

                                                
Query: 642      gctctcggctactacaaccagagcgaggccgg 673
                   | |||||||||||||||||||||||||||
Sbjct: 24750987 ctgcgcggctactacaaccagagcgaggccgg 24750956



 Score =  361 bits (182), Expect = 7e-97
 Identities = 251/274 (91%)
 Strand = Plus / Plus

                                                                            
Query: 951      cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 1010
                ||||||||||| ||||||||||||||||||  || ||||      |||||  | || |||
Sbjct: 27604571 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 27604630

                                                                            
Query: 1011     tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 1070
                ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||
Sbjct: 27604631 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27604690

                                                                            
Query: 1071     cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 1130
                |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 27604691 cagacccaggacatggagctcgtggagaccaggccttcaggggatgggaccttccagaag 27604750

                                                                            
Query: 1131     tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 1190
                ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 27604751 tgggcggccctggtggtgccttctggagaggagcagagctacacctgccaggtgcagcac 27604810

                                                  
Query: 1191     gagggcctgcaggagccactcaccctgagatggg 1224
                ||||||||||||||||| ||||||||||||||||
Sbjct: 27604811 gagggcctgcaggagcccctcaccctgagatggg 27604844



 Score =  359 bits (181), Expect = 3e-96
 Identities = 253/277 (91%)
 Strand = Plus / Minus

                                                                            
Query: 672      gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 731
                |||||||||||| ||||||||||||  |||||| || |||| ||||||||||||||||||
Sbjct: 24686217 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 24686158

                                                                            
Query: 732      cacgggtaccgtcagtatggctacgacggcgccgattacatcgccctgaacgaggacctg 791
                ||||||||| | ||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686157 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 24686098

                                                                            
Query: 792      cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagtgggaggcggcc 851
                |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 24686097 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 24686038

                                                                            
Query: 852      gatgaggcggagcgtaggaggagctacctgcagggcacgtgtgtggagtggctccagaaa 911
                |||| ||||||||   |||||||||||||||||||   ||||||||||| |||||  | |
Sbjct: 24686037 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 24685978

                                                     
Query: 912      tacctggagatggggaaggacacgctgcagcgcgcag 948
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24685977 tacctggagatggggaaggacacgctgcagcgcgcag 24685941



 Score =  351 bits (177), Expect = 6e-94
 Identities = 252/277 (90%)
 Strand = Plus / Minus

                                                                            
Query: 672      gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 731
                |||||||||||| ||||||| ||||  |||||| || |||| ||||||||||||||||||
Sbjct: 24750731 gggtctcacaccctccagagaatgtttggctgctacttgggaccagacgggctcctcctc 24750672

                                                                            
Query: 732      cacgggtaccgtcagtatggctacgacggcgccgattacatcgccctgaacgaggacctg 791
                | |||||||  |||| | | ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24750671 cgcgggtacgatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 24750612

                                                                            
Query: 792      cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagtgggaggcggcc 851
                |||||||||||||||||||||| ||||||||||||| |||||||||||  ||||| ||||
Sbjct: 24750611 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagcaggaggaggcc 24750552

                                                                            
Query: 852      gatgaggcggagcgtaggaggagctacctgcagggcacgtgtgtggagtggctccagaaa 911
                |||| ||||||||| | |||||||||||||||||||||||||||||||| |||||  |||
Sbjct: 24750551 gatgtggcggagcggatgaggagctacctgcagggcacgtgtgtggagtcgctccgcaaa 24750492

                                                     
Query: 912      tacctggagatggggaaggacacgctgcagcgcgcag 948
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24750491 tacctggagatggggaaggacacgctgcagcgcgcag 24750455



 Score =  335 bits (169), Expect = 4e-89
 Identities = 250/277 (90%)
 Strand = Plus / Minus

                                                                            
Query: 672      gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 731
                |||||||||||| |||||||| |||  |||||||||||||| |||||| |||||||||||
Sbjct: 24658161 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24658102

                                                                            
Query: 732      cacgggtaccgtcagtatggctacgacggcgccgattacatcgccctgaacgaggacctg 791
                | | ||||||| | | |   ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24658101 cgccggtaccgacgggacacctacgacggcgccgattacgtcgccctgaacgaggacctg 24658042

                                                                            
Query: 792      cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagtgggaggcggcc 851
                |||||||||||||||||||||||||||||||||||| ||||  ||||||||||| |||||
Sbjct: 24658041 cgctcctggaccgcggcggacacggcggctcagatctccaaatgcaagtgggagacggcc 24657982

                                                                            
Query: 852      gatgaggcggagcgtaggaggagctacctgcagggcacgtgtgtggagtggctccagaaa 911
                 ||| ||||||||    |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 24657981 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggcttcagaaa 24657922

                                                     
Query: 912      tacctggagatggggaaggacacgctgcagcgcgcag 948
                ||||||||||||||| |||||||||||||||||||||
Sbjct: 24657921 tacctggagatgggggaggacacgctgcagcgcgcag 24657885



 Score =  335 bits (169), Expect = 4e-89
 Identities = 250/277 (90%)
 Strand = Plus / Minus

                                                                            
Query: 672      gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 731
                |||||||||||| |||||||| |||  |||||||||||||| |||||| |||||||||||
Sbjct: 24723290 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24723231

                                                                            
Query: 732      cacgggtaccgtcagtatggctacgacggcgccgattacatcgccctgaacgaggacctg 791
                | | ||||||| | | | | ||||||||||||||||||  ||||||||||| ||||||||
Sbjct: 24723230 cgccggtaccgacgggacgtctacgacggcgccgattaggtcgccctgaacaaggacctg 24723171

                                                                            
Query: 792      cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagtgggaggcggcc 851
                ||||||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||
Sbjct: 24723170 cgctcctggaccgcggctgacacggcggctcagatctccaagcacaagtgggagacggcc 24723111

                                                                            
Query: 852      gatgaggcggagcgtaggaggagctacctgcagggcacgtgtgtggagtggctccagaaa 911
                 ||| ||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24723110 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggctccagaaa 24723051

                                                     
Query: 912      tacctggagatggggaaggacacgctgcagcgcgcag 948
                ||||||||||||||| |||||||||||||||||||||
Sbjct: 24723050 tacctggagatgggggaggacacgctgcagcgcgcag 24723014



 Score =  317 bits (160), Expect = 9e-84
 Identities = 244/272 (89%)
 Strand = Plus / Minus

                                                                            
Query: 402      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 461
                ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||  | 
Sbjct: 24686712 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 24686653

                                                                            
Query: 462      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 521
                || |||||||  |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 24686652 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 24686593

                                                                            
Query: 522      ccgaatccgcggatggagcctcgggcgccgtggatacagcaggaggggcaggagtattgg 581
                ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 24686592 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 24686533

                                                                            
Query: 582      gatgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgcgcaca 641
                ||||||||||||||||| | || || || ||||||||||| | |||||  ||||  ||| 
Sbjct: 24686532 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 24686473

                                                
Query: 642      gctctcggctactacaaccagagcgaggccgg 673
                   | |||||||||||||||||||||||||||
Sbjct: 24686472 ctgcgcggctactacaaccagagcgaggccgg 24686441



 Score =  301 bits (152), Expect = 5e-79
 Identities = 242/272 (88%)
 Strand = Plus / Minus

                                                                            
Query: 402      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 461
                |||||||||||||| || |||||   ||||||||||||||||||||||||||||||||||
Sbjct: 24707549 ggtccccactccctaagctattttttcaccgccgtgtcccggcccgaccgcggggagccc 24707490

                                                                            
Query: 462      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 521
                ||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24707489 cgtttcatcgccgtcggctacgtgaacgacacgcagttcgtgcggttcgacagcgacgcc 24707430

                                                                            
Query: 522      ccgaatccgcggatggagcctcgggcgccgtggatacagcaggaggggcaggagtattgg 581
                |||||||||||||||||||| ||||||||||||||  |||||||||||||||| | ||||
Sbjct: 24707429 ccgaatccgcggatggagccgcgggcgccgtggatggagcaggaggggcaggactgttgg 24707370

                                                                            
Query: 582      gatgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgcgcaca 641
                ||| || |||||||||| | || ||     ||||||| || ||||| ||||||||||   
Sbjct: 24707369 gatcagcagacgcggaatgtcaaggaagaggcacagatttaccgagggaacctgcgcggc 24707310

                                                
Query: 642      gctctcggctactacaaccagagcgaggccgg 673
                ||||||||||||||||||||||||| ||||||
Sbjct: 24707309 gctctcggctactacaaccagagcgtggccgg 24707278



 Score =  287 bits (145), Expect = 8e-75
 Identities = 244/277 (88%)
 Strand = Plus / Minus

                                                                            
Query: 672      gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 731
                |||||||||||| |||||| || ||| |||||||||||||| ||||||||||||||||||
Sbjct: 24707089 gggtctcacaccctccagaccaagtagggctgcgacgtgggaccagacgggctcctcctc 24707030

                                                                            
Query: 732      cacgggtaccgtcagtatggctacgacggcgccgattacatcgccctgaacgaggacctg 791
                | | ||||| | ||| | | ||||| |||| | |||||| ||||||||||||||||||||
Sbjct: 24707029 ctctggtacagacaggacgcctacggcggccctgattacgtcgccctgaacgaggacctg 24706970

                                                                            
Query: 792      cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagtgggaggcggcc 851
                |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 24706969 cgctcctggaccgcggcggacacggcggctcagatcgccaagcgcaagtgggaggcggcc 24706910

                                                                            
Query: 852      gatgaggcggagcgtaggaggagctacctgcagggcacgtgtgtggagtggctccagaaa 911
                 ||| ||| ||||    |||||||||||||||||||  |||||||||||||||||  | |
Sbjct: 24706909 aatgtggcagagcaggagaggagctacctgcagggccggtgtgtggagtggctccgcaga 24706850

                                                     
Query: 912      tacctggagatggggaaggacacgctgcagcgcgcag 948
                ||| |||||||||  |||||||||||||||| |||||
Sbjct: 24706849 tacgtggagatggcaaaggacacgctgcagcacgcag 24706813



 Score =  208 bits (105), Expect = 6e-51
 Identities = 165/185 (89%)
 Strand = Plus / Minus

                                                                            
Query: 408      cactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccccgtttc 467
                |||||| ||||||||||| |||| | |||||||||||||| || |||||||||||| | |
Sbjct: 27210466 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27210407

                                                                            
Query: 468      atcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccgaat 527
                 | || |||||||| ||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 27210406 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27210347

                                                                            
Query: 528      ccgcggatggagcctcgggcgccgtggatacagcaggaggggcaggagtattgggatgag 587
                ||| |||||||||| |||||||||||| |  |||||||||||||||||||||||||||||
Sbjct: 27210346 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27210287

                     
Query: 588      gagac 592
                |||||
Sbjct: 27210286 gagac 27210282



 Score =  208 bits (105), Expect = 6e-51
 Identities = 165/185 (89%)
 Strand = Plus / Minus

                                                                            
Query: 408      cactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccccgtttc 467
                |||||| ||||||||||| |||| | |||||||||||||| || |||||||||||| | |
Sbjct: 27629992 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27629933

                                                                            
Query: 468      atcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccgaat 527
                 | || |||||||| ||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 27629932 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27629873

                                                                            
Query: 528      ccgcggatggagcctcgggcgccgtggatacagcaggaggggcaggagtattgggatgag 587
                ||| |||||||||| |||||||||||| |  |||||||||||||||||||||||||||||
Sbjct: 27629872 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27629813

                     
Query: 588      gagac 592
                |||||
Sbjct: 27629812 gagac 27629808



 Score =  194 bits (98), Expect = 9e-47
 Identities = 227/270 (84%)
 Strand = Plus / Minus

                                                                            
Query: 402      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 461
                ||||||||||||||||| ||| ||  |||| | ||||||||||| | |||||||||||||
Sbjct: 24723781 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24723722

                                                                            
Query: 462      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 521
                || |||||||  ||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 24723721 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24723662

                                                                            
Query: 522      ccgaatccgcggatggagcctcgggcgccgtggatacagcaggaggggcaggagtattgg 581
                ||||| | | ||| |||||| ||||||  |  |||| |||||||||||| ||||||||||
Sbjct: 24723661 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagtattgg 24723602

                                                                            
Query: 582      gatgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgcgcaca 641
                || ||||||||||||| |  || || || |||||||||| || ||| ||| |||  ||| 
Sbjct: 24723601 gacgaggagacgcggatcagcaaggacaacgcacagactctctgagggaaactgaacacc 24723542

                                              
Query: 642      gctctcggctactacaaccagagcgaggcc 671
                   | |||||||||||||||||||||||||
Sbjct: 24723541 ctgcgcggctactacaaccagagcgaggcc 24723512



 Score =  186 bits (94), Expect = 2e-44
 Identities = 227/270 (84%), Gaps = 1/270 (0%)
 Strand = Plus / Minus

                                                                            
Query: 402      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 461
                ||||||||||||||||| ||| ||  |||| | ||||||||||| | |||||||||||||
Sbjct: 24658651 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24658592

                                                                            
Query: 462      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 521
                || |||||||  ||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 24658591 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24658532

                                                                            
Query: 522      ccgaatccgcggatggagcctcgggcgccgtggatacagcaggaggggcaggagtattgg 581
                ||||| | | ||| |||||| ||||||  |  |||| |||||||||||| |||||| |||
Sbjct: 24658531 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagta-tgg 24658473

                                                                            
Query: 582      gatgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgcgcaca 641
                || ||||||||||||| |  || || || |||||||||| |||||| ||| |||  ||| 
Sbjct: 24658472 gacgaggagacgcggatcagcaaggacaacgcacagactctccgagggaaactgaacacc 24658413

                                              
Query: 642      gctctcggctactacaaccagagcgaggcc 671
                   | |||||||||||||||||||||||||
Sbjct: 24658412 ctgcgcggctactacaaccagagcgaggcc 24658383



 Score =  172 bits (87), Expect = 3e-40
 Identities = 96/99 (96%)
 Strand = Plus / Minus

                                                                            
Query: 306      acagaatctccgcagattccaaagatgcgggtcagaggccctcaagccatcctcattctg 365
                ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 24627404 acagaatctccgcagattccaaagatgcgggtcaggggccctcaagccatcctcattctg 24627345

                                                       
Query: 366      ctgtcgggggccctggccctgaccgggacccaggcgggt 404
                ||||||||||||||||||||||||||||||  |||||||
Sbjct: 24627344 ctgtcgggggccctggccctgaccgggacctgggcgggt 24627306



 Score =  161 bits (81), Expect = 1e-36
 Identities = 96/101 (95%)
 Strand = Plus / Plus

                                                                            
Query: 1224     gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1283
                |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24603747 gaccctcctcagccccccatccccatcgtgggcatcattgttggcctggttctcgtcctg 24603806

                                                         
Query: 1284     gtccctggaaccatggtggctggaattgtgatctggaggaa 1324
                ||| ||||| |||||||||||||| ||||||||||||||||
Sbjct: 24603807 gtcgctggagccatggtggctggagttgtgatctggaggaa 24603847



 Score =  161 bits (81), Expect = 1e-36
 Identities = 96/101 (95%)
 Strand = Plus / Minus

                                                                            
Query: 1224     gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1283
                |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749451 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 24749392

                                                         
Query: 1284     gtccctggaaccatggtggctggaattgtgatctggaggaa 1324
                ||| ||||| || ||||||||||| ||||||||||||||||
Sbjct: 24749391 gtcgctggagccgtggtggctggagttgtgatctggaggaa 24749351



 Score =  153 bits (77), Expect = 3e-34
 Identities = 95/101 (94%)
 Strand = Plus / Minus

                                                                            
Query: 1224     gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1283
                ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 24684937 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 24684878

                                                         
Query: 1284     gtccctggaaccatggtggctggaattgtgatctggaggaa 1324
                ||| ||||| |  ||||||||||| ||||||||||||||||
Sbjct: 24684877 gtcgctggagctgtggtggctggagttgtgatctggaggaa 24684837



 Score =  153 bits (77), Expect = 3e-34
 Identities = 95/101 (94%)
 Strand = Plus / Minus

                                                                            
Query: 1224     gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1283
                |||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct: 24705789 gaccctgctcagccccccgtccccatggtgggcatcactgttggcctggttcttgtcctg 24705730

                                                         
Query: 1284     gtccctggaaccatggtggctggaattgtgatctggaggaa 1324
                ||| ||||| |||||||||||||| ||||||||||||||||
Sbjct: 24705729 gtcgctggagccatggtggctggagttgtgatctggaggaa 24705689



 Score =  153 bits (77), Expect = 3e-34
 Identities = 95/101 (94%)
 Strand = Plus / Minus

                                                                            
Query: 1224     gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1283
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 24722005 gaccctgctcagccccccgtccccatcgtgggcatcactgttggcctggttctggtcctg 24721946

                                                         
Query: 1284     gtccctggaaccatggtggctggaattgtgatctggaggaa 1324
                ||| ||||| ||||||||||||||  |||||||||||||||
Sbjct: 24721945 gtcgctggagccatggtggctggagctgtgatctggaggaa 24721905



 Score =  153 bits (77), Expect = 3e-34
 Identities = 95/101 (94%)
 Strand = Plus / Plus

                                                                            
Query: 1224     gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1283
                |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616458 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 27616517

                                                         
Query: 1284     gtccctggaaccatggtggctggaattgtgatctggaggaa 1324
                ||| ||||| || ||||| ||||| ||||||||||||||||
Sbjct: 27616518 gtcgctggagccgtggtgactggagttgtgatctggaggaa 27616558



 Score =  151 bits (76), Expect = 1e-33
 Identities = 88/92 (95%)
 Strand = Plus / Minus

                                                                            
Query: 1233     cagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctggtccctgga 1292
                ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 26675472 cagccccccgtccccatcgtgggcatctttgttggcctggttctcgtcctggtcgctgga 26675413

                                                
Query: 1293     accatggtggctggaattgtgatctggaggaa 1324
                 |||||||||||||| ||||||||||||||||
Sbjct: 26675412 gccatggtggctggagttgtgatctggaggaa 26675381



 Score =  145 bits (73), Expect = 7e-32
 Identities = 94/101 (93%)
 Strand = Plus / Minus

                                                                            
Query: 1224     gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1283
                |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24643101 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 24643042

                                                         
Query: 1284     gtccctggaaccatggtggctggaattgtgatctggaggaa 1324
                ||  ||||| || ||||||||||| ||||||||||||||||
Sbjct: 24643041 gttgctggagccgtggtggctggagttgtgatctggaggaa 24643001



 Score =  139 bits (70), Expect = 4e-30
 Identities = 151/178 (84%)
 Strand = Plus / Plus

                                                                            
Query: 407      ccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccccgttt 466
                ||||||||||||| || || ||||||||||||||||||||| |||| ||||| |||| | 
Sbjct: 24620297 ccactccctgagggatgtctacaccgccgtgtcccggcccggccgcagggagacccgctc 24620356

                                                                            
Query: 467      catcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccgaa 526
                ||| |  |||||||||||||||||||||||  || || ||||||||||||||||||||||
Sbjct: 24620357 cattgccgtcggctacgtggacgacacgcaactcatgaggttcgacagcgacgccccgaa 24620416

                                                                          
Query: 527      tccgcggatggagcctcgggcgccgtggatacagcaggaggggcaggagtattgggat 584
                ||||  | ||||||  ||| || |||||||  ||||| ||||||  ||||||||||||
Sbjct: 24620417 tccgaaggtggagctgcggccgtcgtggatggagcagcaggggccagagtattgggat 24620474



 Score =  131 bits (66), Expect = 1e-27
 Identities = 114/130 (87%)
 Strand = Plus / Plus

                                                                            
Query: 717      gacgggctcctcctccacgggtaccgtcagtatggctacgacggcgccgattacatcgcc 776
                ||||||| |||||||| ||||||| ||||||  | ||| |||||||| |||||||||| |
Sbjct: 27614938 gacgggcgcctcctccgcgggtacagtcagttcgcctatgacggcgcggattacatcgtc 27614997

                                                                            
Query: 777      ctgaacgaggacctgcgctcctggaccgcggcggacacggcggctcagatcaccaagcgc 836
                ||||||||||||||||||||||||||||||| || || |||||||||||||||   ||||
Sbjct: 27614998 ctgaacgaggacctgcgctcctggaccgcggtgggcatggcggctcagatcactcggcgc 27615057

                          
Query: 837      aagtgggagg 846
                || |||||||
Sbjct: 27615058 aaatgggagg 27615067



 Score =  129 bits (65), Expect = 4e-27
 Identities = 92/101 (91%)
 Strand = Plus / Minus

                                                                            
Query: 1224     gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1283
                ||||||||||||||||| |||||||| |||| |||||||||||||||||| || ||||||
Sbjct: 24656878 gaccctgctcagccccctgtccccattgtggacatcattgttggcctggtactggtcctg 24656819

                                                         
Query: 1284     gtccctggaaccatggtggctggaattgtgatctggaggaa 1324
                ||| ||||| |||||||| ||||| ||||||||||||||||
Sbjct: 24656818 gtctctggagccatggtgactggagttgtgatctggaggaa 24656778



 Score =  109 bits (55), Expect = 4e-21
 Identities = 148/179 (82%)
 Strand = Plus / Plus

                                                                            
Query: 402      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 461
                |||||||||||||||||||||||| |||| ||||||||||| ||    ||  |||| |||
Sbjct: 27614449 ggtccccactccctgaggtatttctacacagccgtgtcccgaccgagtcgacgggatccc 27614508

                                                                            
Query: 462      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 521
                || |||  ||  |||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct: 27614509 cgcttctccgtcgtcggctatgtagacgacacgcagttcgtgcggttcgacagcaatgcc 27614568

                                                                           
Query: 522      ccgaatccgcggatggagcctcgggcgccgtggatacagcaggaggggcaggagtattg 580
                ||||||||| ||  |||||| ||| | |||||| |  ||| |||||| | |||||||||
Sbjct: 27614569 ccgaatccgagggaggagccgcggacaccgtgggtggagctggagggcccggagtattg 27614627



 Score =  105 bits (53), Expect = 6e-20
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                            
Query: 484      tggacgacacgcagttcgtgcggttcgacagcgacgccccgaatccgcggatggagcctc 543
                ||||||||||||||||||| ||||||  |||||| ||| |||||||  || |||||||||
Sbjct: 27603284 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 27603343

                                                         
Query: 544      gggcgccgtggatacagcaggaggggcaggagtattgggat 584
                |||||||||||||  |||||||||||| ||| |||||||||
Sbjct: 27603344 gggcgccgtggatggagcaggaggggcgggaatattgggat 27603384



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 51/55 (92%)
 Strand = Plus / Plus

                                                                       
Query: 752      ctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcg 806
                ||||||||||| ||||||||||| |||||| || |||||||||||||||||||||
Sbjct: 27603798 ctacgacggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 27603852



 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                          
Query: 363      ctgctgtcgggggccctggccctgaccgggacccaggcgggt 404
                |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 24687067 ctgctgtcggggaccctggccctgaccgggacccaggcgggt 24687026



 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                          
Query: 363      ctgctgtcgggggccctggccctgaccgggacccaggcgggt 404
                |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 24751581 ctgctgtcggggaccctggccctgaccgggacccaggcgggt 24751540



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 79/93 (84%)
 Strand = Plus / Minus

                                                                            
Query: 752      ctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcggcgga 811
                |||||||||||  ||||||||| |  |||||||||||||| | |||||||| || |||||
Sbjct: 27209851 ctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcagcgga 27209792

                                                 
Query: 812      cacggcggctcagatcaccaagcgcaagtggga 844
                || |||||||| | ||||  |||||||||||||
Sbjct: 27209791 catggcggctcgggtcacacagcgcaagtggga 27209759



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 79/93 (84%)
 Strand = Plus / Minus

                                                                            
Query: 752      ctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcggcgga 811
                |||||||||||  ||||||||| |  |||||||||||||| | |||||||| || |||||
Sbjct: 27629377 ctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcagcgga 27629318

                                                 
Query: 812      cacggcggctcagatcaccaagcgcaagtggga 844
                || |||||||| | ||||  |||||||||||||
Sbjct: 27629317 catggcggctcgggtcacacagcgcaagtggga 27629285



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                                
Query: 363      ctgctgtcgggggccctggccctgaccgggac 394
                ||||||||||||||||||||||||||||||||
Sbjct: 24659015 ctgctgtcgggggccctggccctgaccgggac 24658984



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 48/51 (94%), Gaps = 2/51 (3%)
 Strand = Plus / Minus

                                                                   
Query: 872      gagctacctgcagggcacgtgtgtggagtggctccagaa-atacctggaga 921
                |||||||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct: 27209731 gagctacctggagggcacgtgtgtggagtggctc-agaagatacctggaga 27209682



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 890      gtgtgtggagtggctccagaaatacctggagatggggaaggacacgctgcagcgcgcag 948
                |||||||||||||||||  || ||||| |||| ||||||||||  ||||||||||||||
Sbjct: 27603936 gtgtgtggagtggctccgcaagtacctcgagaaggggaaggacgtgctgcagcgcgcag 27603994



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 48/51 (94%), Gaps = 2/51 (3%)
 Strand = Plus / Minus

                                                                   
Query: 872      gagctacctgcagggcacgtgtgtggagtggctccagaa-atacctggaga 921
                |||||||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct: 27629257 gagctacctggagggcacgtgtgtggagtggctc-agaagatacctggaga 27629208



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 363      ctgctgtcgggggccctggccctgaccgggacccaggcgggt 404
                |||||||| ||||||||||||||||||||||||  |||||||
Sbjct: 24707916 ctgctgtccggggccctggccctgaccgggacctgggcgggt 24707875


>gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22
          Length = 107

 Score =  186 bits (94), Expect = 2e-44
 Identities = 103/106 (97%)
 Strand = Plus / Plus

                                                                       
Query: 402 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 61

                                                         
Query: 462 cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggt 507
           || |||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 62  cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggt 107


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,822,079
Number of extensions: 269
Number of successful extensions: 269
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 54
Length of query: 1354
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1333
Effective length of database: 2,808,413,156
Effective search space: 3743614736948
Effective search space used: 3743614736948
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)