Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000400
(1758 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853792.1| PREDICTED: similar to prothymosin, alpha (gene ... 71 1e-13
Alignment gi|XP_851295.1| PREDICTED: hypothetical protein XP_846202 [Cani... 50 5e-08
>ref|XP_853792.1| PREDICTED: similar to prothymosin, alpha (gene sequence 28) [Canis
familiaris].
Length = 189
Score = 70.9 bits (172), Expect(2) = 1e-13
Identities = 39/60 (65%), Positives = 43/60 (71%)
Frame = +3
Query: 174 PLXXXXXXXRLFCRRGLRQLCRQSPWTPASFFIRCIGSPACPIMSDAAVDTSSEITTKDL 353
P+ L RGLRQL RQSP T A F RC+GSPACPIMS+A+VDTSSEITTKDL
Sbjct: 39 PVVATTSAAHLLHHRGLRQLPRQSPRTLA-LFNRCMGSPACPIMSEASVDTSSEITTKDL 97
Score = 25.0 bits (53), Expect(2) = 1e-13
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2
Query: 122 PTGWSEKPSLH 154
PTG SEKPSLH
Sbjct: 22 PTGCSEKPSLH 32
Score = 70.9 bits (172), Expect(2) = 3e-12
Identities = 39/60 (65%), Positives = 43/60 (71%)
Frame = +3
Query: 1443 PLXXXXXXXRLFCRRGLRQLCRQSPWTPASFFIRCIGSPACPIMSDAAVDTSSEITTKDL 1622
P+ L RGLRQL RQSP T A F RC+GSPACPIMS+A+VDTSSEITTKDL
Sbjct: 39 PVVATTSAAHLLHHRGLRQLPRQSPRTLA-LFNRCMGSPACPIMSEASVDTSSEITTKDL 97
Score = 20.4 bits (41), Expect(2) = 3e-12
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 1397 GWSEKPSLH 1423
G SEKPSLH
Sbjct: 24 GCSEKPSLH 32
>ref|XP_851295.1| PREDICTED: hypothetical protein XP_846202 [Canis familiaris].
Length = 169
Score = 50.4 bits (119), Expect(2) = 5e-08
Identities = 30/50 (60%), Positives = 34/50 (68%)
Frame = +3
Query: 201 RLFCRRGLRQLCRQSPWTPASFFIRCIGSPACPIMSDAAVDTSSEITTKD 350
RL RR L + R S + A RCI SPACPI+SDAAVDTSSE+ TKD
Sbjct: 26 RLPVRRNLLRH-RDSRSSLAGGLERCIASPACPIVSDAAVDTSSEMATKD 74
Score = 26.6 bits (57), Expect(2) = 5e-08
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 122 PTGWSEKPSLHC 157
PTG SE PSLHC
Sbjct: 11 PTGCSENPSLHC 22
Score = 50.4 bits (119), Expect(2) = 1e-06
Identities = 30/50 (60%), Positives = 34/50 (68%)
Frame = +3
Query: 1470 RLFCRRGLRQLCRQSPWTPASFFIRCIGSPACPIMSDAAVDTSSEITTKD 1619
RL RR L + R S + A RCI SPACPI+SDAAVDTSSE+ TKD
Sbjct: 26 RLPVRRNLLRH-RDSRSSLAGGLERCIASPACPIVSDAAVDTSSEMATKD 74
Score = 21.9 bits (45), Expect(2) = 1e-06
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 1397 GWSEKPSLHC 1426
G SE PSLHC
Sbjct: 13 GCSENPSLHC 22
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,399,837
Number of extensions: 661553
Number of successful extensions: 1569
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1566
Number of HSP's successfully gapped: 8
Length of query: 586
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 478
Effective length of database: 15,274,216
Effective search space: 7301075248
Effective search space used: 7301075248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000400
(1758 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 361 9e-97
gb|GL894918.2| Sus scrofa unplaced genomic scaffold ChrUScaf2802 224 1e-55
Sscrofa_Chr05 210 2e-51
Sscrofa_ChrX 198 7e-48
Sscrofa_Chr07 186 3e-44
Sscrofa_Chr10 143 4e-31
Sscrofa_Chr01 127 2e-26
Sscrofa_Chr04 100 5e-18
>Sscrofa_Chr09
|| Length = 153670197
Score = 361 bits (182), Expect = 9e-97
Identities = 228/242 (94%), Gaps = 1/242 (0%)
Strand = Plus / Plus
Query: 220 gactccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgca 279
|||||| |||||||| || ||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 49680347 gactcccgcagctttatcaccagagtccttggactcccacttcctttttaatccgctgca 49680406
Query: 280 tcggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatca 339
|| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 49680407 tcagatcaccggcgtgccccatcatgtcagatgcggctgtggacaccagctccgagatca 49680466
Query: 340 ccaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagagg 399
|||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 49680467 tcaccaaggacttaaaa-agaagaaggaagttgtggaggaggcggagagtgggagagagg 49680525
Query: 400 cccctgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtag 459
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 49680526 cccctgctaatgggaatgctaatgaggaaaatggggagcaggagactgacaatgaggtag 49680585
Query: 460 at 461
||
Sbjct: 49680586 at 49680587
Score = 339 bits (171), Expect = 3e-90
Identities = 226/243 (93%), Gaps = 1/243 (0%)
Strand = Plus / Plus
Query: 1489 gactccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgca 1548
|||||| |||||||| || ||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 49680347 gactcccgcagctttatcaccagagtccttggactcccacttcctttttaatccgctgca 49680406
Query: 1549 tcggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatca 1608
|| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 49680407 tcagatcaccggcgtgccccatcatgtcagatgcggctgtggacaccagctccgagatca 49680466
Query: 1609 ccaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaagg 1668
|||||||||||||||| ||||||||||||| |||||||||||||| | ||||| | |||
Sbjct: 49680467 tcaccaaggacttaaaa-agaagaaggaagttgtggaggaggcggagagtgggagagagg 49680525
Query: 1669 cccctgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtag 1728
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 49680526 cccctgctaatgggaatgctaatgaggaaaatggggagcaggagactgacaatgaggtag 49680585
Query: 1729 atg 1731
|||
Sbjct: 49680586 atg 49680588
Score = 280 bits (141), Expect = 3e-72
Identities = 188/203 (92%), Gaps = 3/203 (1%)
Strand = Plus / Plus
Query: 690 ccaccgtgacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcacct 749
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 49681079 ccaccgtgacctattcaccctccacttcctgtctcagaagaatcctaaacatggtcacct 49681138
Query: 750 tcgagtagagagtcgcctgcccgcccgcccaccgcgggcagcgccacccgcagatgacgt 809
|||||||||||||||||||||| || |||||| |||||||||| | ||||||||||||
Sbjct: 49681139 tcgagtagagagtcgcctgcccacctgcccactgcgggcagcg---cgcgcagatgacgt 49681195
Query: 810 gcgctctccaccaccccaccaaaaccacaacgtgaatttgccacagggaaggaaagaaag 869
| |||||||||||||||||||||||||||| |||||||||| |||| | |||||| ||||
Sbjct: 49681196 gtgctctccaccaccccaccaaaaccacaatgtgaatttgcaacagcggaggaaaaaaag 49681255
Query: 870 aaccaaaacttccaaggccctgc 892
|||||||||||||||||||||||
Sbjct: 49681256 aaccaaaacttccaaggccctgc 49681278
Score = 222 bits (112), Expect = 5e-55
Identities = 211/242 (87%), Gaps = 4/242 (1%)
Strand = Plus / Plus
Query: 219 ggactccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgc 278
|||||| ||||||||| | | ||||||||||||||||| ||| |||||| ||| |||||
Sbjct: 81576567 ggactctggcagctttattgtcagagtccttggactcctgct-ccttttcaatctgctgc 81576625
Query: 279 atcggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatc 338
|| | |||||| || ||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 81576626 attgtatcaccagcatgccccatcatgtcagatgcagccatggacaccagctccgagatc 81576685
Query: 339 accaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagag 398
|||||||||||||||||| ||| |||| || | || |||| |||||||| |||||||
Sbjct: 81576686 accaccaaggacttaaaa---aaggaggatgttgcagatgaggtggagaatgagagagag 81576742
Query: 399 gcccctgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggta 458
|| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 81576743 gcacatgctaatgggaatgctaatgaggaaaatggtgagcaggaggctgacaatgaggta 81576802
Query: 459 ga 460
||
Sbjct: 81576803 ga 81576804
Score = 198 bits (100), Expect = 7e-48
Identities = 208/242 (85%), Gaps = 4/242 (1%)
Strand = Plus / Plus
Query: 1488 ggactccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgc 1547
|||||| ||||||||| | | ||||||||||||||||| ||| |||||| ||| |||||
Sbjct: 81576567 ggactctggcagctttattgtcagagtccttggactcctgct-ccttttcaatctgctgc 81576625
Query: 1548 atcggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatc 1607
|| | |||||| || ||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 81576626 attgtatcaccagcatgccccatcatgtcagatgcagccatggacaccagctccgagatc 81576685
Query: 1608 accaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaag 1667
|||||||||||||||||| ||| |||| || | || |||| ||| |||| || | ||
Sbjct: 81576686 accaccaaggacttaaaa---aaggaggatgttgcagatgaggtggagaatgagagagag 81576742
Query: 1668 gcccctgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggta 1727
|| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 81576743 gcacatgctaatgggaatgctaatgaggaaaatggtgagcaggaggctgacaatgaggta 81576802
Query: 1728 ga 1729
||
Sbjct: 81576803 ga 81576804
Score = 170 bits (86), Expect = 2e-39
Identities = 116/126 (92%)
Strand = Plus / Plus
Query: 959 gtacatattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcgg 1018
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 81577279 gtacatattgttaggggtcagccatttttaatgatctcagatgaccaaaccagcctttgg 81577338
Query: 1019 agcgttctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctca 1078
||| || ||| ||||||||| ||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 81577339 agcatttgctgccctacttctaacttttcttgtggtgtgactatgttcattattatctca 81577398
Query: 1079 aaggag 1084
||||||
Sbjct: 81577399 aaggag 81577404
Score = 153 bits (77), Expect = 4e-34
Identities = 104/113 (92%)
Strand = Plus / Plus
Query: 547 ctgaggcagctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacacca 606
||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct: 81576879 ctgaggcagctacagacaaacgggcagctgaagatgatgaggatgacaatgttgacacca 81576938
Query: 607 agaagcagaagaccgatgaggatgactagacagcaaaaaaggaaaagctaaaa 659
| ||||| ||||| |||||||||||| ||| ||||||||||||||||||||||
Sbjct: 81576939 aaaagcaaaagactgatgaggatgaccagatagcaaaaaaggaaaagctaaaa 81576991
Score = 143 bits (72), Expect = 4e-31
Identities = 163/191 (85%), Gaps = 3/191 (1%)
Strand = Plus / Plus
Query: 697 gacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcaccttcgagta 756
|||| |||||||||||||||||| ||||||||||||||||| | ||||||||||| ||||
Sbjct: 81577024 gacccattcaccctccacttcccatctcagaagaatcctaaccctggtcaccttcaagta 81577083
Query: 757 gagagtcgcctgcccgcccgcccaccgcgggcagcgccacccgcagatgacgtgcgctct 816
|||||| |||||| |||| ||||| || ||||| | |||| ||||||||| | ||||||
Sbjct: 81577084 gagagt--cctgcctgcccacccactgcaggcagtgtcacctgcagatgacatacgctct 81577141
Query: 817 ccaccaccccaccaaaaccacaacgtgaatttgccacagggaaggaaagaaagaaccaaa 876
| |||||| |||||||| || | |||||||||| |||||| |||||| ||| |||| ||
Sbjct: 81577142 ctaccacctgaccaaaactac-atgtgaatttgcaacaggggaggaaaaaaaaaacccaa 81577200
Query: 877 acttccaaggc 887
|||| ||||||
Sbjct: 81577201 acttacaaggc 81577211
Score = 125 bits (63), Expect = 9e-26
Identities = 92/104 (88%)
Strand = Plus / Plus
Query: 1131 caatcttattccgagcattccaataacnnnnnnngtgtatgtacttagctgtactataag 1190
|||||||||||| ||||||||| |||| |||||||||||| |||||||| ||||
Sbjct: 49681494 caatcttattccaagcattccagtaacttcttttgtgtatgtactttgctgtactctaag 49681553
Query: 1191 tagttggtttgtatgagatggttaaaaaggccaaagataaaagg 1234
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 49681554 tagttggcttgtatgagatggttaaaaaggccaaagataaaagg 49681597
Score = 109 bits (55), Expect = 5e-21
Identities = 105/126 (83%), Gaps = 18/126 (14%)
Strand = Plus / Plus
Query: 959 gtacatattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcgg 1018
||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 49681346 gtacatattgttaggggtcagccgtttttaatgatcccggatgaccaaaccag------- 49681398
Query: 1019 agcgttctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctca 1078
||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 49681399 -----------tcctacttctgactttacttgtggtgtgaccatgttcattatactctca 49681447
Query: 1079 aaggag 1084
||||||
Sbjct: 49681448 aaggag 49681453
Score = 105 bits (53), Expect = 8e-20
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 594 gatgtggacaccaagaagcagaagaccgatgaggatgactagacagcaaaaaaggaaaag 653
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 49680705 gatgaggacaccaagaagcagaagatggatgaggatgactagacagcaaaaaaggaaaag 49680764
Query: 654 ctaaaactt 662
||||||||
Sbjct: 49680765 ttaaaactt 49680773
Score = 105 bits (53), Expect = 8e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 1286 ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattt 1338
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49681653 ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattt 49681705
Score = 93.7 bits (47), Expect = 3e-16
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1299 tatgtgtgaaacaatgttgtccaacaataaaccggaattttattttgc-tgagttgttct 1357
|||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 81577620 tatgcgtgaaacaatgttgtccaacaataaactggaattttattttgcttgagttgttct 81577679
Query: 1358 aac 1360
|||
Sbjct: 81577680 aac 81577682
Score = 71.9 bits (36), Expect = 1e-09
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1165 gtgtatgtacttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaa 1224
||||||||||||||||||| |||||| | ||||||| |||| ||| |||||||| ||||
Sbjct: 81577477 gtgtatgtacttagctgtattataagaggctggtttgcatgacatgcttaaaaagaccaa 81577536
Query: 1225 agataaaa 1232
||||||||
Sbjct: 81577537 agataaaa 81577544
Score = 60.0 bits (30), Expect = 4e-06
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 125 actggctggtctgaaaagccatctttgcattgtt 158
|||||||||||||||||||||| |||||||||||
Sbjct: 49680245 actggctggtctgaaaagccatttttgcattgtt 49680278
>gb|GL894918.2| Sus scrofa unplaced genomic scaffold ChrUScaf2802
Length = 34004
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 972 ggggtcagccatttttaatgatctcggatgaccaaaccagccttcggagcgttctctgtc 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6098 ggggtcagccatttttaatgatctcggatgaccaaaccagccttcggagcgttctctgtc 6039
Query: 1032 ctacttctgactttacttgtggtgtgaccatgttcattataatctcaaaggag 1084
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6038 ctacttctgactttacttgtggtgtgaccatgttcattataatctcaaaggag 5986
Score = 149 bits (75), Expect = 6e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 345 aaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagaggcccct 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7597 aaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagaggcccct 7538
Query: 405 gctaatggcaatgct 419
|||||||||||||||
Sbjct: 7537 gctaatggcaatgct 7523
Score = 145 bits (73), Expect = 9e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 586 aggacgacgatgtggacaccaagaagcagaagaccgatgaggatgactagacagcaaaaa 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6172 aggacgacgatgtggacaccaagaagcagaagaccgatgaggatgactagacagcaaaaa 6113
Query: 646 aggaaaagctaaa 658
|||||||||||||
Sbjct: 6112 aggaaaagctaaa 6100
Score = 125 bits (63), Expect = 9e-26
Identities = 72/75 (96%)
Strand = Plus / Minus
Query: 1614 aaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaaggcccct 1673
||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||
Sbjct: 7597 aaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagaggcccct 7538
Query: 1674 gctaatggcaatgct 1688
|||||||||||||||
Sbjct: 7537 gctaatggcaatgct 7523
Score = 93.7 bits (47), Expect = 3e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 1314 gttgtccaacaataaaccggaattttattttgctgagttgttctaac 1360
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5771 gttgtccaacaataaaccggaattttattttgctgagttgttctaac 5725
Score = 93.7 bits (47), Expect = 3e-16
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 1131 caatcttattccgagcattccaataacnnnnnnngtgtatgtacttagctgtactataag 1190
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5939 caatcttattccgagcattccaataactttttttgtgtatgtacttagctgtactataag 5880
Query: 1191 tagttggt 1198
||||||||
Sbjct: 5879 tagttggt 5872
Score = 85.7 bits (43), Expect = 8e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 1689 aatgaggaaaatggggagcaggaggctgacaatgaggtagatg 1731
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7258 aatgaggaaaatggggagcaggaggctgacaatgaggtagatg 7216
Score = 85.7 bits (43), Expect = 8e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 121 ccccactggctggtctgaaaagccatctttgcattgttcccgt 163
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8750 ccccactggctggtctgaaaagccatctttgcattgttcccgt 8708
Score = 83.8 bits (42), Expect = 3e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 547 ctgaggcagctacaggcaaacgggcagctgaagatgatgagg 588
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6484 ctgaggcagctacaggcaaacgggcagctgaagatgatgagg 6443
Score = 83.8 bits (42), Expect = 3e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 420 aatgaggaaaatggggagcaggaggctgacaatgaggtagat 461
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7258 aatgaggaaaatggggagcaggaggctgacaatgaggtagat 7217
Score = 75.8 bits (38), Expect = 7e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 1395 ctggctggtctgaaaagccatctttgcattgttcccgt 1432
||||||||||||||||||||||||||||||||||||||
Sbjct: 8745 ctggctggtctgaaaagccatctttgcattgttcccgt 8708
>Sscrofa_Chr05
|| Length = 111506441
Score = 210 bits (106), Expect = 2e-51
Identities = 193/222 (86%), Gaps = 5/222 (2%)
Strand = Plus / Plus
Query: 239 ccagagtccttggactcccgcttccttttttatccgctgcatcggatcaccggcgtgccc 298
|||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||| ||
Sbjct: 96987310 ccagagtccttggactcccgcttcttttttaatccgctgcatcagatcacccacgtgtcc 96987369
Query: 299 catcatgtcagacgcggccgtggacaccagctccgagatcaccaccaaggacttaaaaga 358
|||| ||||||| | |||| |||||| ||||||| ||||||||| ||||||||| |
Sbjct: 96987370 catcctgtcagatgtggccatggacaacagctccaagatcaccatcaaggactt-----a 96987424
Query: 359 gaagaaggaagtcgtggaggaggcggagaatgggagagaggcccctgctaatggcaatgc 418
|||||||||||| |||||||| || |||| ||| |||||| | ||||||||| | |||||
Sbjct: 96987425 gaagaaggaagttgtggaggaagcagagagtggaagagagacacctgctaataggaatgc 96987484
Query: 419 taatgaggaaaatggggagcaggaggctgacaatgaggtaga 460
|||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 96987485 taatgaggaaaatggggagcagaaggctgacaatgacgtaga 96987526
Score = 186 bits (94), Expect = 3e-44
Identities = 201/236 (85%), Gaps = 3/236 (1%)
Strand = Plus / Plus
Query: 228 cagctttgtcgccagagtccttggactcccgcttccttttttatccgctgcatcggatca 287
||||||||| |||||||||||||||||||| ||| |||| | ||| ||||||||||| |
Sbjct: 35900734 cagctttgttgccagagtccttggactcccactttctttgtaatctgctgcatcggacta 35900793
Query: 288 ccggcgtgccccatcatgtcagacgcg---gccgtggacaccagctccgagatcaccacc 344
| ||| ||||||||||||||||| || ||||||| |||||||||||||||||||||
Sbjct: 35900794 ctggcctgccccatcatgtcagaagcccaagccgtgggtaccagctccgagatcaccacc 35900853
Query: 345 aaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagaggcccct 404
||||||||| |||||||||||||||| |||||||||||| | || | ||||||||| | |
Sbjct: 35900854 aaggacttacaagagaagaaggaagttgtggaggaggcgaaaaacgagagagaggcacat 35900913
Query: 405 gctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtaga 460
|| |||| ||||| | | || ||| |||||| ||||||||||||| |||||||||
Sbjct: 35900914 tctgatgggaatgccagtaagaaaattggggaccaggaggctgacagtgaggtaga 35900969
Score = 186 bits (94), Expect = 3e-44
Identities = 190/222 (85%), Gaps = 5/222 (2%)
Strand = Plus / Plus
Query: 1508 ccagagtccttggactcccgcttccttttttatccgctgcatcggatcaccggcgtgccc 1567
|||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||| ||
Sbjct: 96987310 ccagagtccttggactcccgcttcttttttaatccgctgcatcagatcacccacgtgtcc 96987369
Query: 1568 catcatgtcagacgcggccgtggacaccagctccgagatcaccaccaaggacttaaaaga 1627
|||| ||||||| | |||| |||||| ||||||| ||||||||| ||||||||| |
Sbjct: 96987370 catcctgtcagatgtggccatggacaacagctccaagatcaccatcaaggactt-----a 96987424
Query: 1628 gaagaaggaagtcgtggaggaggcggaaaatgggaaaaaggcccctgctaatggcaatgc 1687
|||||||||||| |||||||| || || | ||| | | || | ||||||||| | |||||
Sbjct: 96987425 gaagaaggaagttgtggaggaagcagagagtggaagagagacacctgctaataggaatgc 96987484
Query: 1688 taatgaggaaaatggggagcaggaggctgacaatgaggtaga 1729
|||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 96987485 taatgaggaaaatggggagcagaaggctgacaatgacgtaga 96987526
Score = 184 bits (93), Expect = 1e-43
Identities = 111/117 (94%)
Strand = Plus / Plus
Query: 965 attgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcggagcgtt 1024
|||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| ||
Sbjct: 96988002 attgttaggggtcagccatttttaatgatctccgatgaccaaaccagacttctgagcatt 96988061
Query: 1025 ctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctcaaag 1081
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 96988062 ctctgtcctatttctgactttacttctggtgtgaccatgttcattataatctcaaag 96988118
Score = 178 bits (90), Expect = 7e-42
Identities = 200/236 (84%), Gaps = 3/236 (1%)
Strand = Plus / Plus
Query: 1497 cagctttgtcgccagagtccttggactcccgcttccttttttatccgctgcatcggatca 1556
||||||||| |||||||||||||||||||| ||| |||| | ||| ||||||||||| |
Sbjct: 35900734 cagctttgttgccagagtccttggactcccactttctttgtaatctgctgcatcggacta 35900793
Query: 1557 ccggcgtgccccatcatgtcagacgcg---gccgtggacaccagctccgagatcaccacc 1613
| ||| ||||||||||||||||| || ||||||| |||||||||||||||||||||
Sbjct: 35900794 ctggcctgccccatcatgtcagaagcccaagccgtgggtaccagctccgagatcaccacc 35900853
Query: 1614 aaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaaggcccct 1673
||||||||| |||||||||||||||| |||||||||||| |||| | || | |||| | |
Sbjct: 35900854 aaggacttacaagagaagaaggaagttgtggaggaggcgaaaaacgagagagaggcacat 35900913
Query: 1674 gctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtaga 1729
|| |||| ||||| | | || ||| |||||| ||||||||||||| |||||||||
Sbjct: 35900914 tctgatgggaatgccagtaagaaaattggggaccaggaggctgacagtgaggtaga 35900969
Score = 170 bits (86), Expect = 2e-39
Identities = 113/122 (92%)
Strand = Plus / Plus
Query: 959 gtacatattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcgg 1018
|||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||| |
Sbjct: 51866647 gtacatatcgttaggggtcagccatttttaatgatcccagatgaccagaccagccttcag 51866706
Query: 1019 agcgttctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctca 1078
||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 51866707 agcattctctgtcctacttctgactttatttgtggtgtgaccataatcattataatctca 51866766
Query: 1079 aa 1080
||
Sbjct: 51866767 aa 51866768
Score = 141 bits (71), Expect = 1e-30
Identities = 111/126 (88%), Gaps = 10/126 (7%)
Strand = Plus / Plus
Query: 959 gtacatattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcgg 1018
|||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35901468 gtacctattgtgaagggtcagccatttttaatgatctcggatgaccaaaccagccttc-- 35901525
Query: 1019 agcgttctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctca 1078
|||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 35901526 --------ctgtcctacttctgactttacttgcgatgtgaccatgttcattataatctca 35901577
Query: 1079 aaggag 1084
||||||
Sbjct: 35901578 aaggag 35901583
Score = 137 bits (69), Expect = 2e-29
Identities = 203/245 (82%), Gaps = 7/245 (2%)
Strand = Plus / Plus
Query: 221 actccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgcat 280
|||| ||||||||| || |||| |||||||||| || ||| |||||| || | ||||||
Sbjct: 51865935 actctggcagctttatcaccagcgtccttggacagccactttctttttaattcactgcat 51865994
Query: 281 cggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctcc-gagatca 339
|||||| || ||||||||||| ||||| | ||| | || ||||||| |||||||
Sbjct: 51865995 gagatcactggtatgccccatcatatcagatgtggc--ttgataccagcttttgagatca 51866052
Query: 340 ccaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagagg 399
||| |||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct: 51866053 ccatcaaggacttaaaagagcagaaagaagttgtggaggaggcggagaatgggagagagg 51866112
Query: 400 cccctgct----aatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgag 455
| |||||| ||||| ||||||| |||| || || |||| |||||||||| |||||||
Sbjct: 51866113 cacctgctaatgaatgggaatgctagtgagtaagatagggatcaggaggctgccaatgag 51866172
Query: 456 gtaga 460
|||||
Sbjct: 51866173 gtaga 51866177
Score = 133 bits (67), Expect = 4e-28
Identities = 169/203 (83%), Gaps = 5/203 (2%)
Strand = Plus / Plus
Query: 690 ccaccgtgacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcacct 749
|||| ||||| | ||||||||||||||||| |||||||| |||||||| | ||| ||
Sbjct: 96987735 ccactgtgacttgttcaccctccacttcccatctcagaaaaatcctaaccttgggtctct 96987794
Query: 750 tcgagtagagagtcgcctgcccgcccgcccaccgcgggcagcgccacccgcagatgacgt 809
| ||||||| ||| ||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 96987795 tttagtagagtcccgcgtgcccgcccacccaccgtgggcagtgccacccgcagatg---- 96987850
Query: 810 gcgctctccaccaccccaccaaaaccacaacgtgaatttgccacagggaaggaaagaaag 869
|||||| |||||||| |||||||||||||||||||| ||| |||||| |||||| ||||
Sbjct: 96987851 -cgctcttcaccacccaaccaaaaccacaacgtgaatatgcaacaggggaggaaaaaaag 96987909
Query: 870 aaccaaaacttccaaggccctgc 892
||| |||||| |||||||||||
Sbjct: 96987910 gaccgaaactttcaaggccctgc 96987932
Score = 123 bits (62), Expect = 3e-25
Identities = 91/103 (88%)
Strand = Plus / Plus
Query: 1132 aatcttattccgagcattccaataacnnnnnnngtgtatgtacttagctgtactataagt 1191
||||||||||||||| ||||| |||| |||||||||| ||||||||||||||||
Sbjct: 35901624 aatcttattccgagcgttccagtaactttttttgtgtatgtacatagctgtactataagt 35901683
Query: 1192 agttggtttgtatgagatggttaaaaaggccaaagataaaagg 1234
| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 35901684 aattggtttgtgtgagatggttaaaaaggccaaagataaaagg 35901726
Score = 115 bits (58), Expect = 8e-23
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 1165 gtgtatgtacttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaa 1224
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 51866853 gtgtatatacttagctgtactataagtagttggcttgtatgagatggttaaaaaggccaa 51866912
Query: 1225 agataaaagg 1234
|| |||||||
Sbjct: 51866913 aggtaaaagg 51866922
Score = 113 bits (57), Expect = 3e-22
Identities = 200/245 (81%), Gaps = 7/245 (2%)
Strand = Plus / Plus
Query: 1490 actccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgcat 1549
|||| ||||||||| || |||| |||||||||| || ||| |||||| || | ||||||
Sbjct: 51865935 actctggcagctttatcaccagcgtccttggacagccactttctttttaattcactgcat 51865994
Query: 1550 cggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctcc-gagatca 1608
|||||| || ||||||||||| ||||| | ||| | || ||||||| |||||||
Sbjct: 51865995 gagatcactggtatgccccatcatatcagatgtggc--ttgataccagcttttgagatca 51866052
Query: 1609 ccaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaagg 1668
||| |||||||||||||||| |||| ||||| |||||||||||||| ||||||| | |||
Sbjct: 51866053 ccatcaaggacttaaaagagcagaaagaagttgtggaggaggcggagaatgggagagagg 51866112
Query: 1669 cccctgct----aatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgag 1724
| |||||| ||||| ||||||| |||| || || |||| |||||||||| |||||||
Sbjct: 51866113 cacctgctaatgaatgggaatgctagtgagtaagatagggatcaggaggctgccaatgag 51866172
Query: 1725 gtaga 1729
|||||
Sbjct: 51866173 gtaga 51866177
Score = 111 bits (56), Expect = 1e-21
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 547 ctgaggcagctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacacca 606
||||||||| || ||| |||| || ||||||||||||||||| || ||||| |||||||
Sbjct: 51866258 ctgaggcagttataggtaaacaggtggctgaagatgatgaggatgatgatgttgacacca 51866317
Query: 607 agaagcagaagaccgatgaggatgactagacagcaaaaaaggaaaagctaaa 658
|||||||||||||| |||||||| |||||| |||||||| ||||||| ||||
Sbjct: 51866318 agaagcagaagaccaatgaggataactagaaagcaaaaatggaaaagttaaa 51866369
Score = 109 bits (55), Expect = 5e-21
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 1286 ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttg 1345
||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||
Sbjct: 35901790 ggcctgtttgatgtatgtgtgaaacaatgctgtccaaaaataaactggaattttattttg 35901849
Query: 1346 ctgagttgttc 1356
|| ||||||||
Sbjct: 35901850 ctcagttgttc 35901860
Score = 97.6 bits (49), Expect = 2e-17
Identities = 85/97 (87%)
Strand = Plus / Plus
Query: 554 agctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacaccaagaagca 613
||||||||||||||||||||||||||||||||| || ||| ||| ||| ||||| ||||
Sbjct: 35901063 agctacaggcaaacgggcagctgaagatgatgaagatgacagtgttgactccaagcagca 35901122
Query: 614 gaagaccgatgaggatgactagacagcaaaaaaggaa 650
|| ||| |||||||||||||||| |||||||||||
Sbjct: 35901123 aaacaccagtgaggatgactagacaacaaaaaaggaa 35901159
Score = 97.6 bits (49), Expect = 2e-17
Identities = 165/201 (82%), Gaps = 2/201 (0%)
Strand = Plus / Plus
Query: 690 ccaccgtgacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcacct 749
|||| |||||||||| ||| ||||||||| ||||| ||||||||||||| |||||||||
Sbjct: 51866378 ccactgtgacctatttaccttccacttcctgtctccaaagaatcctaaacatggtcacct 51866437
Query: 750 tcgagtagagagtcgcctgcccgcccgcccaccgc-gggcagcgccacccgcagatgacg 808
|| ||||||| ||||||| | |||||| || ||||||| ||||| | ||||||
Sbjct: 51866438 tcaagtagagtcctacctgcccaactgcccactgctgggcagcaccacctgtagatgata 51866497
Query: 809 tgcgctctccaccaccccaccaaaaccacaacgtgaatttgccacagggaaggaaagaaa 868
|| ||||||||||||| |||||||||||||| ||||||| | ||| | ||| || |||
Sbjct: 51866498 tggactctccaccacccaaccaaaaccacaacatgaattttcggcagaggagggaaaaaa 51866557
Query: 869 gaaccaaaacttccaaggccc 889
| ||| |||||||||||||||
Sbjct: 51866558 g-acccaaacttccaaggccc 51866577
Score = 83.8 bits (42), Expect = 3e-13
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 1286 ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttg 1345
||||||||| ||| |||||| ||| ||| |||||||||||||||| |||||||||||||
Sbjct: 51866983 ggcctgttttatgcatgtgtaaaagaatattgtccaacaataaactagaattttattttg 51867042
Query: 1346 ctgagttgtt 1355
||||||||||
Sbjct: 51867043 ctgagttgtt 51867052
Score = 75.8 bits (38), Expect = 7e-11
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1165 gtgtatgtacttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaa 1224
|||||||||||| |||||||||| | |||||||| |||||||||||||| ||| || |||
Sbjct: 96988225 gtgtatgtacttggctgtactattaatagttggtctgtatgagatggtt-aaacgggcaa 96988283
Query: 1225 agataaaagg 1234
||||||||||
Sbjct: 96988284 agataaaagg 96988293
Score = 65.9 bits (33), Expect = 7e-08
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 124 cactggctggtctgaaaagccatctttgcattgttcc 160
||||||||| |||||||||||||||||||||||||||
Sbjct: 35900656 cactggctgctctgaaaagccatctttgcattgttcc 35900692
Score = 63.9 bits (32), Expect = 3e-07
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 125 actggctggtctgaaaagccatctttgcattgttcc 160
|||||||| |||||||||||||||||||||||||||
Sbjct: 51865842 actggctgctctgaaaagccatctttgcattgttcc 51865877
Score = 63.9 bits (32), Expect = 3e-07
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 600 gacaccaagaagcagaagaccgatgaggatgactagacagc-aaaaaaggaaaagctaaa 658
||||||| ||||||||||||| |||||||| | |||||||| ||||||||||||| ||||
Sbjct: 96987652 gacaccaggaagcagaagaccaatgaggatcaatagacagcaaaaaaaggaaaaggtaaa 96987711
Score = 61.9 bits (31), Expect = 1e-06
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1395 ctggctggtctgaaaagccatctttgcattgttcc 1429
||||||| |||||||||||||||||||||||||||
Sbjct: 35900658 ctggctgctctgaaaagccatctttgcattgttcc 35900692
Score = 61.9 bits (31), Expect = 1e-06
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1395 ctggctggtctgaaaagccatctttgcattgttcc 1429
||||||| |||||||||||||||||||||||||||
Sbjct: 51865843 ctggctgctctgaaaagccatctttgcattgttcc 51865877
Score = 61.9 bits (31), Expect = 1e-06
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 1287 gcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttgc 1346
|||||||| || | |||||||||||||||||||| || |||| || ||| ||||||||||
Sbjct: 96988342 gcctgtttcatatttgtgtgaaacaatgttgtcctactataagccagaactttattttgc 96988401
Query: 1347 tga 1349
|||
Sbjct: 96988402 tga 96988404
>Sscrofa_ChrX
|| Length = 144288218
Score = 198 bits (100), Expect = 7e-48
Identities = 208/242 (85%), Gaps = 4/242 (1%)
Strand = Plus / Minus
Query: 220 gactccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgca 279
|||||| |||||||| | |||||| ||||||||||||| ||| | |||| ||| || ||
Sbjct: 88934174 gactccagcagctttattgccagaatccttggactcccactttcattttaatctacttca 88934115
Query: 280 tcggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatca 339
| ||| ||| || | |||||||||||||||| |||| |||||| ||||||| |||||||
Sbjct: 88934114 tgggagcactggtgcgccccatcatgtcagatgcggtagtggacgccagctctgagatca 88934055
Query: 340 ccaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagagg 399
|||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 88934054 ccac-aaggactta---gagaagaaggaagttgtggaggaggcggagaatgggagagagg 88933999
Query: 400 cccctgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtag 459
| || |||||||| ||||||||| ||||| |||||||||| |||||||| |||||| |||
Sbjct: 88933998 cacccgctaatgggaatgctaataaggaatatggggagcaagaggctgataatgagatag 88933939
Query: 460 at 461
||
Sbjct: 88933938 at 88933937
Score = 176 bits (89), Expect = 3e-41
Identities = 206/243 (84%), Gaps = 4/243 (1%)
Strand = Plus / Minus
Query: 1489 gactccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgca 1548
|||||| |||||||| | |||||| ||||||||||||| ||| | |||| ||| || ||
Sbjct: 88934174 gactccagcagctttattgccagaatccttggactcccactttcattttaatctacttca 88934115
Query: 1549 tcggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatca 1608
| ||| ||| || | |||||||||||||||| |||| |||||| ||||||| |||||||
Sbjct: 88934114 tgggagcactggtgcgccccatcatgtcagatgcggtagtggacgccagctctgagatca 88934055
Query: 1609 ccaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaagg 1668
|||| ||||||||| |||||||||||||| |||||||||||||| ||||||| | |||
Sbjct: 88934054 ccac-aaggactta---gagaagaaggaagttgtggaggaggcggagaatgggagagagg 88933999
Query: 1669 cccctgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtag 1728
| || |||||||| ||||||||| ||||| |||||||||| |||||||| |||||| |||
Sbjct: 88933998 cacccgctaatgggaatgctaataaggaatatggggagcaagaggctgataatgagatag 88933939
Query: 1729 atg 1731
|||
Sbjct: 88933938 atg 88933936
Score = 125 bits (63), Expect = 9e-26
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 1286 ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttg 1345
||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||
Sbjct: 110362379 ggcctgtttgatgtatgtgtgaagcaatgttgtctaacaataaactggaattttattttg 110362438
Query: 1346 ctgagttgttctaac 1360
|||||||||||||||
Sbjct: 110362439 ctgagttgttctaac 110362453
Score = 111 bits (56), Expect = 1e-21
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 1289 ctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttgctg 1348
||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 88933122 ctgtttggtatatgtgtgaaacaatgttgtccaacaataaactggaattttattttgctg 88933063
Query: 1349 agttgttctaac 1360
|||| |||||||
Sbjct: 88933062 agttattctaac 88933051
Score = 101 bits (51), Expect = 1e-18
Identities = 94/107 (87%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 547 ctgaggcagctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacacca 606
|||||||||||||||||||| ||||||||||| |||||||||| |||| ||| || ||||
Sbjct: 88933852 ctgaggcagctacaggcaaatgggcagctgaaaatgatgaggatgacgttgttga-acca 88933794
Query: 607 agaagcagaagaccgatgaggatgactagacagcaaaaaaggaaaag 653
||||||||||||| ||| || ||||||| | | |||||||| |||||
Sbjct: 88933793 agaagcagaagactgataagaatgactacataccaaaaaagtaaaag 88933747
Score = 91.7 bits (46), Expect = 1e-15
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 1165 gtgtatgtacttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaa 1224
||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||| ||||
Sbjct: 88933255 gtgtatgtacttagctgtactataaatagttggtctgtataagatggataaaaagaccaa 88933196
Query: 1225 agataaaagg 1234
|||| |||||
Sbjct: 88933195 agattaaagg 88933186
Score = 60.0 bits (30), Expect = 4e-06
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 1023 ttctctgtcctacttctgactttacttgtggtgt 1056
|||||| |||||||||||||||||||||||||||
Sbjct: 88933391 ttctctatcctacttctgactttacttgtggtgt 88933358
>Sscrofa_Chr07
|| Length = 134764511
Score = 186 bits (94), Expect = 3e-44
Identities = 118/126 (93%)
Strand = Plus / Minus
Query: 959 gtacatattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcgg 1018
||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||
Sbjct: 49901216 gtacatattgttaggggtcagccctttttaatgatctcggttgaccaaaccatcctttgg 49901157
Query: 1019 agcgttctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctca 1078
|||||||||||||||| ||||||| | ||||||||||||| |||||||||||||||||||
Sbjct: 49901156 agcgttctctgtcctatttctgacctcacttgtggtgtgatcatgttcattataatctca 49901097
Query: 1079 aaggag 1084
||||||
Sbjct: 49901096 aaggag 49901091
Score = 143 bits (72), Expect = 4e-31
Identities = 194/236 (82%), Gaps = 14/236 (5%)
Strand = Plus / Minus
Query: 225 cggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgcatcgga 284
|||||||||||||||||||||||||||||||| |||||| ||| || |||| ||| ||
Sbjct: 49902181 cggcagctttgtcgccagagtccttggactcctgcttccctttcattctgctgtatcaga 49902122
Query: 285 tcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatcaccacc 344
||||| || ||||||||||||||||| || |||||||| || |||| ||||||||||||
Sbjct: 49902121 tcaccagcatgccccatcatgtcagaggccgccgtggatgccggctctgagatcaccacc 49902062
Query: 345 aaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagaggcccct 404
||||||| |||||||||||| || |||||||||||||||| | |||
Sbjct: 49902061 aaggact-----ccgaagaaggaagttgt---------ggagaatgggagagagacacct 49902016
Query: 405 gctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtaga 460
|||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||
Sbjct: 49902015 gctaatggggatgctaatgagaaaaatagggagcaggagactgaccctgaggtaga 49901960
Score = 127 bits (64), Expect = 2e-26
Identities = 192/236 (81%), Gaps = 14/236 (5%)
Strand = Plus / Minus
Query: 1494 cggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgcatcgga 1553
|||||||||||||||||||||||||||||||| |||||| ||| || |||| ||| ||
Sbjct: 49902181 cggcagctttgtcgccagagtccttggactcctgcttccctttcattctgctgtatcaga 49902122
Query: 1554 tcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatcaccacc 1613
||||| || ||||||||||||||||| || |||||||| || |||| ||||||||||||
Sbjct: 49902121 tcaccagcatgccccatcatgtcagaggccgccgtggatgccggctctgagatcaccacc 49902062
Query: 1614 aaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaaggcccct 1673
||||||| |||||||||||| |||||| ||||||| | || | |||
Sbjct: 49902061 aaggact-----ccgaagaaggaagttgtggag---------aatgggagagagacacct 49902016
Query: 1674 gctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtaga 1729
|||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||
Sbjct: 49902015 gctaatggggatgctaatgagaaaaatagggagcaggagactgaccctgaggtaga 49901960
Score = 95.6 bits (48), Expect = 8e-17
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 559 caggcaaacgggcagctgaagatgatgaggacgacgatgtggacaccaagaagcagaaga 618
|||||||| | |||||||||||||||||| | || ||| | |||||||||||||||||||
Sbjct: 49901867 caggcaaaggagcagctgaagatgatgagcatgatgatattgacaccaagaagcagaaga 49901808
Query: 619 ccgatgaggatgactagacagcaaaaaa 646
| |||||||| |||| ||||||||||||
Sbjct: 49901807 ctgatgaggaggactggacagcaaaaaa 49901780
Score = 93.7 bits (47), Expect = 3e-16
Identities = 166/203 (81%), Gaps = 7/203 (3%)
Strand = Plus / Minus
Query: 690 ccaccgtgacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcacct 749
||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 49901478 ccaccatgacctattcattctccacttcctgtctcagaagaatcctaaatgtggtcacct 49901419
Query: 750 tcgagtagagagtcgcctgcccgcccgcccaccgcgggcagcgccacccgcagatgacgt 809
| | |||| || ||| ||| || ||||| |||| | ||||| |||||||| |
Sbjct: 49901418 t---ggagagtcccgactgtccgtccacccacttcgggatgtgccac---cagatgacat 49901365
Query: 810 gcgctctccaccaccccaccaaaaccacaacgtgaatttgccacagggaaggaaagaaag 869
|| ||||||||||| |||||||||||| |||||||| | ||||| |||||| ||||
Sbjct: 49901364 gcctgctccaccacccagccaaaaccacaaggtgaatttacaacaggagaggaaaaaaag 49901305
Query: 870 aaccaaaacttccaaggccctgc 892
|||| ||||||||||||||||||
Sbjct: 49901304 aacc-aaacttccaaggccctgc 49901283
Score = 91.7 bits (46), Expect = 1e-15
Identities = 65/70 (92%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1165 gtgtatgtacttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaa 1224
||||||||||||||||||||||||||||||| |||| ||||| ||| ||||| |||||||
Sbjct: 16910640 gtgtatgtacttagctgtactataagtagttagttt-tatgaaatgattaaagaggccaa 16910698
Query: 1225 agataaaagg 1234
||||||||||
Sbjct: 16910699 agataaaagg 16910708
Score = 87.7 bits (44), Expect = 2e-14
Identities = 99/116 (85%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 964 tattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcggagcgt 1023
|||| ||||||||||||| |||||| || ||| |||||||| || | |||| || | ||
Sbjct: 16910439 tattcttaggggtcagccttttttagtggtcttagatgaccagactatcctttggggtgt 16910498
Query: 1024 tctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctcaa 1079
||||| |||||||| ||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 16910499 tctctttcctactt-tgactttacttattgtgtgatcatgttcattataatctcaa 16910553
Score = 83.8 bits (42), Expect = 3e-13
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1168 tatgtacttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaaaga 1227
|||||| || ||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 49900986 tatgtatttggctatactataaatagttggtttgtatgagatggtttaaaaggccaaaga 49900927
Query: 1228 ta 1229
||
Sbjct: 49900926 ta 49900925
Score = 71.9 bits (36), Expect = 1e-09
Identities = 67/75 (89%), Gaps = 3/75 (4%)
Strand = Plus / Minus
Query: 1286 ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttg 1345
||||||||||||||||||||||| | |||||| |||| |||||| |||||||| ||||
Sbjct: 49900591 ggcctgtttgatgtatgtgtgaa--agtgttgtgcaacggtaaaccagaatttta-tttg 49900535
Query: 1346 ctgagttgttctaac 1360
|||||||||||||||
Sbjct: 49900534 ctgagttgttctaac 49900520
Score = 60.0 bits (30), Expect = 4e-06
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 568 gggcagctgaagatgatgaggacgacgatgtggacacc-aagaagcagaagaccgatgag 626
|||||||||||| ||| ||| || ||||| |||||| ||||| ||||||||||||||
Sbjct: 16909502 gggcagctgaaggtgacaagggtgatgatgttgacaccgaagaacaagaagaccgatgag 16909561
Query: 627 gatgactagacagcaaaaaaggaaaa 652
|||||||| ||| |||||||| ||||
Sbjct: 16909562 gatgactacacaacaaaaaagaaaaa 16909587
>Sscrofa_Chr10
|| Length = 79102373
Score = 143 bits (72), Expect = 4e-31
Identities = 105/116 (90%)
Strand = Plus / Plus
Query: 969 ttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcggagcgttctct 1028
|||||||||||||||||||||||||||| | |||||| | ||| || ||||| ||||||
Sbjct: 78605067 ttaggggtcagccatttttaatgatctcaggtgaccagatcagattttggagcattctct 78605126
Query: 1029 gtcctacttctgactttacttgtggtgtgaccatgttcattataatctcaaaggag 1084
|| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 78605127 gtactacttctgactttacttgtggtgtgatcatgttccttataatctcaaaggag 78605182
Score = 119 bits (60), Expect = 5e-24
Identities = 100/112 (89%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 548 tgaggcagctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacaccaa 607
||||||||||||||| ||| |||||||||||||||||||||| || ||| || |||||
Sbjct: 78604663 tgaggcagctacaggtaaatgggcagctgaagatgatgaggatgattgtgttgaaaccaa 78604722
Query: 608 gaagcagaagaccgatgaggatgactagacag-caaaaaaggaaaagctaaa 658
|||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct: 78604723 gaagcagaagactgatgaggatgactagacagttaaaaaaggaaaagttaaa 78604774
Score = 95.6 bits (48), Expect = 8e-17
Identities = 135/163 (82%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 690 ccaccgtgacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcacct 749
||||| ||||||||||||||| |||||| ||||||||||||||||||| |||| ||||
Sbjct: 78604789 ccaccttgacctattcaccctgtgcttcccttctcagaagaatcctaaacatggttacct 78604848
Query: 750 tcgagtagagag--tcgcctgcccgcccgcccaccgcgggcagcgccacccgcagatgac 807
|| || |||||| ||| ||||| ||| ||| | | |||| || | ||| |||||||||
Sbjct: 78604849 tctaggagagagcctcgactgcctgcctgccagctgggggctgccctaccagcagatgac 78604908
Query: 808 gtgcgctctccaccaccccaccaaaaccacaacgtgaatttgc 850
|| ||||||||||| | |||||||||||||| |||||||||
Sbjct: 78604909 atgatctctccaccacacaaccaaaaccacaacatgaatttgc 78604951
Score = 85.7 bits (43), Expect = 8e-14
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 1286 ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttg 1345
|||||||||||||| |||||||||||||||||||||| || ||| | || |||| |||||
Sbjct: 78605368 ggcctgtttgatgtgtgtgtgaaacaatgttgtccaataaaaaaacagagttttgttttg 78605427
Query: 1346 ctgagttgttctaac 1360
||| |||||||||||
Sbjct: 78605428 ctgtgttgttctaac 78605442
Score = 60.0 bits (30), Expect = 4e-06
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 383 ggagaatgggagagaggcccctgctaatggcaatgctaatgaggaaaatggggagcagga 442
||||||||| || | ||| ||||||||||| || ||||||||| ||| | |||||| |||
Sbjct: 78604504 ggagaatggaagtggggcacctgctaatgggaaagctaatgagaaaattagggagctgga 78604563
Query: 443 ggctgacaatgagg 456
|||||||||||||
Sbjct: 78604564 tgctgacaatgagg 78604577
>Sscrofa_Chr01
|| Length = 315321322
Score = 127 bits (64), Expect = 2e-26
Identities = 100/112 (89%)
Strand = Plus / Minus
Query: 547 ctgaggcagctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacacca 606
|||||||||||||||||||| ||||||||| |||||||||| |||||||| |||| ||
Sbjct: 313112869 ctgaggcagctacaggcaaataggcagctgacaatgatgaggatgacgatgttgacagca 313112810
Query: 607 agaagcagaagaccgatgaggatgactagacagcaaaaaaggaaaagctaaa 658
|||||| |||||| ||||||||||||||| |||||||||||||||| ||||
Sbjct: 313112809 agaagctaaagacctatgaggatgactagagagcaaaaaaggaaaagttaaa 313112758
Score = 117 bits (59), Expect = 2e-23
Identities = 101/115 (87%)
Strand = Plus / Minus
Query: 969 ttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcggagcgttctct 1028
||||||||||| ||||||||||| | || |||||||| |||| ||| |||| ||||||
Sbjct: 313112463 ttaggggtcagacatttttaatggtttcatatgaccaagccagatttcagagcattctct 313112404
Query: 1029 gtcctacttctgactttacttgtggtgtgaccatgttcattataatctcaaagga 1083
|||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||
Sbjct: 313112403 gtcctacttctgactttacttgtgatgtgatcatggtcattatattctcaaagga 313112349
Score = 115 bits (58), Expect = 8e-23
Identities = 168/200 (84%), Gaps = 6/200 (3%)
Strand = Plus / Minus
Query: 696 tgacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcacctt--cga 753
|||||||||||| |||||| |||| ||||||||||||||||||| |||||||||| ||
Sbjct: 313112738 tgacctattcacactccacctcccttctcagaagaatcctaaacatggtcacctttggga 313112679
Query: 754 gtagagagtcgcctgcccgcccgcccaccgcgggcagcgccacccgcagatgac--gtgc 811
|||||||||| ||| || ||| ||| || | |||| | ||||||| |||||||| | ||
Sbjct: 313112678 gtagagagtc-cct-cctgcctgccgacagtgggctgtgccacccacagatgacaagcgc 313112621
Query: 812 gctctccaccaccccaccaaaaccacaacgtgaatttgccacagggaaggaaagaaagaa 871
||||||||||||| |||||||||||||| | |||||| |||||| |||||| || | |
Sbjct: 313112620 tctctccaccacccaaccaaaaccacaacatctatttgcaacaggggaggaaaaaatgta 313112561
Query: 872 ccaaaacttccaaggccctg 891
| |||||||||||||||||
Sbjct: 313112560 ctcaaacttccaaggccctg 313112541
Score = 99.6 bits (50), Expect = 5e-18
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 1287 gcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttgc 1346
|||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||
Sbjct: 313112143 gcctgtttgatgtatgtgtgaaacaatgttgtccaataataaactggagtttgattttgc 313112084
Query: 1347 tgagttgttctaac 1360
||||||||||||
Sbjct: 313112083 caagttgttctaac 313112070
Score = 91.7 bits (46), Expect = 1e-15
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 1173 acttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaaagataaaa 1232
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 312561749 acttagccatactataagtagttggtttgtatgagatggttaaaaaggataaagataaaa 312561690
Query: 1233 gg 1234
||
Sbjct: 312561689 gg 312561688
Score = 89.7 bits (45), Expect = 5e-15
Identities = 145/177 (81%), Gaps = 6/177 (3%)
Strand = Plus / Minus
Query: 1553 atcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatcaccac 1612
||||| || |||||||||||||||||| | || ||||| |||||||| |||||||||||
Sbjct: 313113119 atcactggtgtgccccatcatgtcagatgtgggtgtggaaaccagctctgagatcaccac 313113060
Query: 1613 caaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaaggcccc 1672
|||||||||||||| ||||||| ||||||||| ||| ||||| | ||||| |
Sbjct: 313113059 aaaggacttaaaaga-----aggaagttatggaggaggtggagaatgg-atcaaggcatc 313113006
Query: 1673 tgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtaga 1729
||||| ||| || ||||||||| ||| | |||| |||||||||||||||||||||
Sbjct: 313113005 tgctattgggaaagctaatgagaaaattatggagttggaggctgacaatgaggtaga 313112949
Score = 89.7 bits (45), Expect = 5e-15
Identities = 145/177 (81%), Gaps = 6/177 (3%)
Strand = Plus / Minus
Query: 284 atcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatcaccac 343
||||| || |||||||||||||||||| | || ||||| |||||||| |||||||||||
Sbjct: 313113119 atcactggtgtgccccatcatgtcagatgtgggtgtggaaaccagctctgagatcaccac 313113060
Query: 344 caaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagaggcccc 403
|||||||||||||| ||||||| ||||||||| ||||||||| | |||| |
Sbjct: 313113059 aaaggacttaaaaga-----aggaagttatggaggaggtggagaatggatca-aggcatc 313113006
Query: 404 tgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtaga 460
||||| ||| || ||||||||| ||| | |||| |||||||||||||||||||||
Sbjct: 313113005 tgctattgggaaagctaatgagaaaattatggagttggaggctgacaatgaggtaga 313112949
Score = 67.9 bits (34), Expect = 2e-08
Identities = 84/103 (81%)
Strand = Plus / Minus
Query: 1131 caatcttattccgagcattccaataacnnnnnnngtgtatgtacttagctgtactataag 1190
|||||||||||| |||||| || |||| ||||||||| |||||| |||| ||||
Sbjct: 313112300 caatcttattccaagcatttcagtaacttttcttgtgtatgtatttagctatactgtaag 313112241
Query: 1191 tagttggtttgtatgagatggttaaaaaggccaaagataaaag 1233
| ||||||| | ||||||||||||||| ||||||||| ||||
Sbjct: 313112240 ttgttggttcatgtgagatggttaaaaaagccaaagatgaaag 313112198
>Sscrofa_Chr04
|| Length = 143465943
Score = 99.6 bits (50), Expect = 5e-18
Identities = 108/126 (85%), Gaps = 1/126 (0%)
Strand = Plus / Minus
Query: 959 gtacatattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcgg 1018
||||||||||||| ||||||||||||| |||| |||| || ||| |||| | |||| |
Sbjct: 88902743 gtacatattgttacgggtcagccatttctaataatctagg-tgatgaaacaaatcttcag 88902685
Query: 1019 agcgttctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctca 1078
|| ||| |||| ||||||||||||||| ||| || |||||||||||||||||| ||||||
Sbjct: 88902684 agtgttttctgccctacttctgactttgcttatgatgtgaccatgttcattattatctca 88902625
Query: 1079 aaggag 1084
||||||
Sbjct: 88902624 aaggag 88902619
Score = 75.8 bits (38), Expect = 7e-11
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 1294 tgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttgctgagt 1351
|||||||||||||||||| || |||||||||||||| || |||||||||||||||||
Sbjct: 88902433 tgatgtatgtgtgaaacactgctgtccaacaataaattggcattttattttgctgagt 88902376
Score = 63.9 bits (32), Expect = 3e-07
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 547 ctgaggcagctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacacca 606
|||||||||||||||||||| |||||| |||| |||||||||| || | || ||||| |
Sbjct: 88904698 ctgaggcagctacaggcaaatgggcaggtgaaaatgatgaggatgatgctgctgacacta 88904639
Query: 607 agaagcagaagaccgatgag 626
|| |||||||||| ||||||
Sbjct: 88904638 ag-agcagaagactgatgag 88904620
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,665,122
Number of extensions: 440
Number of successful extensions: 440
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 91
Length of query: 1758
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1736
Effective length of database: 2,808,408,574
Effective search space: 4875397284464
Effective search space used: 4875397284464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)