Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000407
(1078 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_788785.1| high mobility group protein B1 [Bos taurus]. 323 1e-88
Alignment gi|XP_001252666.1| PREDICTED: high-mobility group box 1 isoform... 320 2e-87
Alignment gi|XP_002693969.1| PREDICTED: high-mobility group box 1-like [B... 318 5e-87
Alignment gi|NP_001032705.1| high mobility group protein B2 [Bos taurus]. 282 4e-76
Alignment gi|NP_001069753.1| high mobility group protein B3 isoform 1 [Bo... 248 5e-66
Alignment gi|NP_001106728.1| high mobility group protein B3 isoform 2 [Bo... 248 7e-66
Alignment gi|XP_002686711.1| PREDICTED: high-mobility group box 2-like [B... 241 6e-64
Alignment gi|XP_875720.3| PREDICTED: high-mobility group box 2-like [Bos ... 241 6e-64
Alignment gi|XP_002700176.1| PREDICTED: high mobility group box 3-like [B... 192 6e-49
Alignment gi|XP_869151.1| PREDICTED: high mobility group box 3-like [Bos ... 192 6e-49
>ref|NP_788785.1| high mobility group protein B1 [Bos taurus].
Length = 215
Score = 323 bits (829), Expect = 1e-88
Identities = 155/169 (91%), Positives = 155/169 (91%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPD
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 169
>ref|XP_001252666.1| PREDICTED: high-mobility group box 1 isoform 1 [Bos taurus].
Length = 215
Score = 320 bits (819), Expect = 2e-87
Identities = 153/169 (90%), Positives = 153/169 (90%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDPKKPRGKMSSYAFFVQTCREEH KKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAK DKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKVDKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPD
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 169
>ref|XP_002693969.1| PREDICTED: high-mobility group box 1-like [Bos taurus].
Length = 215
Score = 318 bits (815), Expect = 5e-87
Identities = 152/169 (89%), Positives = 152/169 (89%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDPKKPRGKMSSYAFFVQTCREEH KKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAK DKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKVDKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKKLGEMWNNTA DDKQP DIAAYRAKGKPD
Sbjct: 121 SIGDVAKKLGEMWNNTAVDDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 169
>ref|NP_001032705.1| high mobility group protein B2 [Bos taurus].
Length = 209
Score = 282 bits (721), Expect = 4e-76
Identities = 133/169 (78%), Positives = 143/169 (84%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 169
>ref|NP_001069753.1| high mobility group protein B3 isoform 1 [Bos taurus].
Length = 236
Score = 248 bits (634), Expect = 5e-66
Identities = 118/171 (69%), Positives = 135/171 (78%)
Frame = +2
Query: 158 LNMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 337
+ M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS KEK
Sbjct: 35 VKMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKS 94
Query: 338 KFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP 517
KF++MAKADK RY+REMK Y P KG KK KDPNAPKRPPS FFLFCSE+RPKIK +P
Sbjct: 95 KFDEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSANP 152
Query: 518 GLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
G+SIGDVAKKLGEMWNN + +KQP D+A Y++KGK D
Sbjct: 153 GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFD 203
>ref|NP_001106728.1| high mobility group protein B3 isoform 2 [Bos taurus].
Length = 200
Score = 248 bits (633), Expect = 7e-66
Identities = 118/169 (69%), Positives = 134/169 (79%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
++MAKADK RY+REMK Y P KG KK KDPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKKLGEMWNN + +KQP D+A Y++KGK D
Sbjct: 119 SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFD 167
>ref|XP_002686711.1| PREDICTED: high-mobility group box 2-like [Bos taurus].
Length = 283
Score = 241 bits (616), Expect = 6e-64
Identities = 113/150 (75%), Positives = 124/150 (82%)
Frame = +2
Query: 221 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYI 400
+ TCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KFEDMAK+DKARY+REMK Y+
Sbjct: 94 INTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYV 153
Query: 401 PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD 580
PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGLSIGD AKKLGEMW+ +A
Sbjct: 154 PPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAK 213
Query: 581 DKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
DKQP DIAAYRAKGK +
Sbjct: 214 DKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 243
Score = 53.1 bits (126), Expect = 4e-07
Identities = 30/93 (32%), Positives = 47/93 (50%)
Frame = +2
Query: 170 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 349
K DP P+ S++ F R + K +HP S+ + +KK E W SAK+K +E
Sbjct: 163 KKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIG--DTAKKLGEMWSEQSAKDKQPYEQ 220
Query: 350 MAKADKARYEREMKTYIPPKGETKKKFKDPNAP 448
A K +YE+++ Y KG+++ K P P
Sbjct: 221 KAAKLKEKYEKDIAAY-RAKGKSEAGKKGPGRP 252
>ref|XP_875720.3| PREDICTED: high-mobility group box 2-like [Bos taurus].
Length = 283
Score = 241 bits (616), Expect = 6e-64
Identities = 113/150 (75%), Positives = 124/150 (82%)
Frame = +2
Query: 221 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYI 400
+ TCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KFEDMAK+DKARY+REMK Y+
Sbjct: 94 INTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYV 153
Query: 401 PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD 580
PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGLSIGD AKKLGEMW+ +A
Sbjct: 154 PPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAK 213
Query: 581 DKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
DKQP DIAAYRAKGK +
Sbjct: 214 DKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 243
Score = 53.1 bits (126), Expect = 4e-07
Identities = 30/93 (32%), Positives = 47/93 (50%)
Frame = +2
Query: 170 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 349
K DP P+ S++ F R + K +HP S+ + +KK E W SAK+K +E
Sbjct: 163 KKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIG--DTAKKLGEMWSEQSAKDKQPYEQ 220
Query: 350 MAKADKARYEREMKTYIPPKGETKKKFKDPNAP 448
A K +YE+++ Y KG+++ K P P
Sbjct: 221 KAAKLKEKYEKDIAAY-RAKGKSEAGKKGPGRP 252
>ref|XP_002700176.1| PREDICTED: high mobility group box 3-like [Bos taurus].
Length = 197
Score = 192 bits (487), Expect = 6e-49
Identities = 94/142 (66%), Positives = 109/142 (76%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
M KGDP+KP+GKMS++AFFVQ CR++HKK P VNF+EFSKKCSERWKTMS KEK F
Sbjct: 1 MAKGDPEKPKGKMSAHAFFVQMCRKKHKKT-PKVPVNFAEFSKKCSERWKTMSGKEKSTF 59
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
++MAKADK Y +EMK Y G K KDPNAPKRPPS FFLF SE+ +IK +PG+
Sbjct: 60 DEMAKADKVHYNQEMKDY----GSAKGGKKDPNAPKRPPSGFFLFFSEFCSEIKSTNPGI 115
Query: 524 SIGDVAKKLGEMWNNTAADDKQ 589
SIGDVAKKLGEMWNN + KQ
Sbjct: 116 SIGDVAKKLGEMWNNLSDSKKQ 137
>ref|XP_869151.1| PREDICTED: high mobility group box 3-like [Bos taurus].
Length = 197
Score = 192 bits (487), Expect = 6e-49
Identities = 94/142 (66%), Positives = 109/142 (76%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
M KGDP+KP+GKMS++AFFVQ CR++HKK P VNF+EFSKKCSERWKTMS KEK F
Sbjct: 1 MAKGDPEKPKGKMSAHAFFVQMCRKKHKKT-PKVPVNFAEFSKKCSERWKTMSGKEKSTF 59
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
++MAKADK Y +EMK Y G K KDPNAPKRPPS FFLF SE+ +IK +PG+
Sbjct: 60 DEMAKADKVHYNQEMKDY----GSAKGGKKDPNAPKRPPSGFFLFFSEFCSEIKSTNPGI 115
Query: 524 SIGDVAKKLGEMWNNTAADDKQ 589
SIGDVAKKLGEMWNN + KQ
Sbjct: 116 SIGDVAKKLGEMWNNLSDSKKQ 137
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,635,847
Number of extensions: 922460
Number of successful extensions: 2452
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 2401
Number of HSP's successfully gapped: 26
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000407
(1078 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002937.1| high mobility group protein B1 [Canis lupus ... 323 1e-88
Alignment gi|XP_543194.2| PREDICTED: similar to high-mobility group box 2... 282 4e-76
Alignment gi|XP_538194.1| PREDICTED: similar to high-mobility group box 3... 248 7e-66
Alignment gi|XP_853765.1| PREDICTED: similar to High mobility group prote... 206 4e-53
Alignment gi|XP_854557.1| PREDICTED: similar to high-mobility group box 2... 186 4e-47
Alignment gi|XP_548893.2| PREDICTED: similar to High mobility group prote... 174 2e-43
Alignment gi|XP_856523.1| PREDICTED: similar to high-mobility group box 2... 166 3e-41
Alignment gi|XP_852235.1| PREDICTED: similar to High mobility group prote... 162 4e-40
Alignment gi|XP_851529.1| PREDICTED: similar to HMG2 like isoform 1 [Cani... 135 9e-32
Alignment gi|XP_859991.1| PREDICTED: similar to structure specific recogn... 73 5e-13
>ref|NP_001002937.1| high mobility group protein B1 [Canis lupus familiaris].
Length = 215
Score = 323 bits (829), Expect = 1e-88
Identities = 155/169 (91%), Positives = 155/169 (91%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPD
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 169
>ref|XP_543194.2| PREDICTED: similar to high-mobility group box 2 isoform 1 [Canis
familiaris].
Length = 210
Score = 282 bits (721), Expect = 4e-76
Identities = 133/169 (78%), Positives = 143/169 (84%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 169
>ref|XP_538194.1| PREDICTED: similar to high-mobility group box 3 [Canis familiaris].
Length = 201
Score = 248 bits (633), Expect = 7e-66
Identities = 118/169 (69%), Positives = 134/169 (79%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
++MAKADK RY+REMK Y P KG KK KDPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKKLGEMWNN + +KQP D+A Y++KGK D
Sbjct: 119 SIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADYKSKGKFD 167
>ref|XP_853765.1| PREDICTED: similar to High mobility group protein 1 (HMG-1) (High
mobility group protein B1) (Amphoterin) (Heparin-binding
protein p30) [Canis familiaris].
Length = 189
Score = 206 bits (523), Expect = 4e-53
Identities = 100/131 (76%), Positives = 109/131 (83%)
Frame = +2
Query: 278 SEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRP 457
S+FS+KCSERWKTMSA+EKGKFEDMAKAD+A YEREMKTYIPPKGETK++FKDP+AP+RP
Sbjct: 23 SQFSEKCSERWKTMSAREKGKFEDMAKADEACYEREMKTYIPPKGETKRQFKDPSAPRRP 82
Query: 458 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXD 637
PSAFF F SEY PKIKGEHP LS GDV KKLGEMWNNT AD+KQP D
Sbjct: 83 PSAFFSFYSEYCPKIKGEHPSLSFGDVGKKLGEMWNNT-ADEKQPYEKNTAKLKEKYEKD 141
Query: 638 IAAYRAKGKPD 670
IAAYRAKGKPD
Sbjct: 142 IAAYRAKGKPD 152
>ref|XP_854557.1| PREDICTED: similar to high-mobility group box 2 [Canis familiaris].
Length = 347
Score = 186 bits (471), Expect = 4e-47
Identities = 86/100 (86%), Positives = 93/100 (93%)
Frame = +2
Query: 260 DASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDP 439
D+SVNF+EFSKKCSERWKTMSAKEK KFEDMAK+DKARY+REMK Y+PPKG+ K K KDP
Sbjct: 240 DSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDP 299
Query: 440 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEM 559
NAPKRPPSAFFLFCSE+RPKIK EHPGLSIGD AKKLGEM
Sbjct: 300 NAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEM 339
>ref|XP_548893.2| PREDICTED: similar to High mobility group protein 1 (HMG-1) (High
mobility group protein B1) (Amphoterin) (Heparin-binding
protein p30) [Canis familiaris].
Length = 130
Score = 174 bits (440), Expect = 2e-43
Identities = 94/169 (55%), Positives = 100/169 (59%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDPKK RGKMSSYAFF+QTC+EEHKKKHPDASV FSEFSKKCSE WK MSAK+KG F
Sbjct: 1 MGKGDPKKLRGKMSSYAFFLQTCQEEHKKKHPDASVTFSEFSKKCSEMWKIMSAKDKGTF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAK Y P++KGEHP L
Sbjct: 61 EDMAK-------------------------------------------YHPEVKGEHPSL 77
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
IGDVAK L EMWN TAAD+KQP DIAA RAKGKPD
Sbjct: 78 CIGDVAKTLVEMWNKTAADNKQPHEKKAAELKEKYEKDIAASRAKGKPD 126
>ref|XP_856523.1| PREDICTED: similar to high-mobility group box 2 isoform 2 [Canis
familiaris].
Length = 134
Score = 166 bits (421), Expect = 3e-41
Identities = 75/83 (90%), Positives = 80/83 (96%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKG 412
EDMAK+DKARY+REMK Y+PPKG
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKG 83
>ref|XP_852235.1| PREDICTED: similar to High mobility group protein 1 (HMG-1) (High
mobility group protein B1) (Amphoterin) (Heparin-binding
protein p30) [Canis familiaris].
Length = 171
Score = 162 bits (411), Expect = 4e-40
Identities = 79/99 (79%), Positives = 81/99 (81%)
Frame = +2
Query: 374 YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLG 553
YEREMKTYIP KGETKKKFKDPNA KRPPS FFLFCSEYRPKIKGE+PGLSIGDVAK LG
Sbjct: 33 YEREMKTYIPLKGETKKKFKDPNALKRPPSFFFLFCSEYRPKIKGEYPGLSIGDVAKNLG 92
Query: 554 EMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
EMWNNTAAD+KQP DIAAYRAKGKPD
Sbjct: 93 EMWNNTAADEKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 131
>ref|XP_851529.1| PREDICTED: similar to HMG2 like isoform 1 [Canis familiaris].
Length = 191
Score = 135 bits (339), Expect = 9e-32
Identities = 64/163 (39%), Positives = 99/163 (60%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGK +P+ +SSY F+ R + K++ P+ + F EFS+KCSE+W+++S EK K+
Sbjct: 1 MGKEIQLRPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
E +AK DKARY+ EM Y+ K K++ +DP AP+RPPS+F +FC ++ ++K E+P
Sbjct: 61 EALAKLDKARYQEEMMNYVGKK--KKRRKRDPQAPRRPPSSFLIFCQDHYAQLKRENPTW 118
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYR 652
S+ VAK G MW+ T+ +KQP ++ YR
Sbjct: 119 SVVQVAKASGRMWSVTSGAEKQPYEQRAAVLRARYQEELEVYR 161
>ref|XP_859991.1| PREDICTED: similar to structure specific recognition protein 1
isoform 5 [Canis familiaris].
Length = 711
Score = 72.8 bits (177), Expect = 5e-13
Identities = 42/122 (34%), Positives = 66/122 (54%)
Frame = +2
Query: 224 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 403
+T R + + D + F + S + S +++ K + + KA A+ + K
Sbjct: 480 ETGRSSIQGRGGDLAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK---- 535
Query: 404 PKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD 583
K KK KDPNAPKRP SA+ L+ + R KIK +HPG+SI D++KK GE+W + +
Sbjct: 536 -KPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKADHPGISITDLSKKAGEIWKGMSKEK 594
Query: 584 KQ 589
K+
Sbjct: 595 KE 596
Score = 62.8 bits (151), Expect = 6e-10
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = +2
Query: 143 AEEK*LNMGKG-DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTM 319
+ +K + + KG DP P+ MS+Y ++ RE+ K HP S+ ++ SKK E WK M
Sbjct: 533 SRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKADHPGISI--TDLSKKAGEIWKGM 590
Query: 320 SAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPK 451
S ++K +++ A+ + YE+ MK Y +GE+ K+ K K
Sbjct: 591 SKEKKEEWDRKAEDARREYEKAMKEYEGGRGESSKRDKSKKKKK 634
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,667,809
Number of extensions: 871636
Number of successful extensions: 2690
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 2655
Number of HSP's successfully gapped: 36
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000407
(1078 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002119.1| high mobility group protein B1 [Homo sapiens]. 323 1e-88
Alignment gi|NP_001124161.1| high mobility group protein B2 [Homo sapiens]. 282 4e-76
Alignment gi|NP_002120.1| high mobility group protein B2 [Homo sapiens]. 282 4e-76
Alignment gi|NP_001124160.1| high mobility group protein B2 [Homo sapiens]. 282 4e-76
Alignment gi|NP_005333.2| high mobility group protein B3 [Homo sapiens]. 247 2e-65
Alignment gi|NP_003104.2| nuclear autoantigen Sp-100 isoform 2 [Homo sapi... 234 1e-61
Alignment gi|NP_660206.2| high mobility group protein B4 [Homo sapiens]. 133 2e-31
Alignment gi|NP_003137.1| FACT complex subunit SSRP1 [Homo sapiens]. 72 7e-13
Alignment gi|NP_001092267.1| TOX high mobility group box family member 2 ... 64 3e-10
Alignment gi|NP_001092266.1| TOX high mobility group box family member 2 ... 64 3e-10
>ref|NP_002119.1| high mobility group protein B1 [Homo sapiens].
Length = 215
Score = 323 bits (829), Expect = 1e-88
Identities = 155/169 (91%), Positives = 155/169 (91%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPD
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 169
>ref|NP_001124161.1| high mobility group protein B2 [Homo sapiens].
Length = 209
Score = 282 bits (721), Expect = 4e-76
Identities = 133/169 (78%), Positives = 143/169 (84%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 169
>ref|NP_002120.1| high mobility group protein B2 [Homo sapiens].
Length = 209
Score = 282 bits (721), Expect = 4e-76
Identities = 133/169 (78%), Positives = 143/169 (84%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 169
>ref|NP_001124160.1| high mobility group protein B2 [Homo sapiens].
Length = 209
Score = 282 bits (721), Expect = 4e-76
Identities = 133/169 (78%), Positives = 143/169 (84%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 169
>ref|NP_005333.2| high mobility group protein B3 [Homo sapiens].
Length = 200
Score = 247 bits (630), Expect = 2e-65
Identities = 118/169 (69%), Positives = 133/169 (78%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
++MAKADK RY+REMK Y P KG KK KDPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKKLGEMWNN +KQP D+A Y++KGK D
Sbjct: 119 SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFD 167
>ref|NP_003104.2| nuclear autoantigen Sp-100 isoform 2 [Homo sapiens].
Length = 879
Score = 234 bits (597), Expect = 1e-61
Identities = 115/145 (79%), Positives = 118/145 (81%)
Frame = +2
Query: 236 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE 415
EEHKKK+PDASV FSEF KKCSE WKT+ AKEKGKFEDMAKADKA YEREMKTYIPPKGE
Sbjct: 699 EEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGE 758
Query: 416 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPX 595
KKKFKDPNAPKRPP AFFLFCSEYRPKIKGEHPGLSI DV KKL MWNNTAA DKQ
Sbjct: 759 KKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFY 818
Query: 596 XXXXXXXXXXXXXDIAAYRAKGKPD 670
DIAAYRAKGKP+
Sbjct: 819 EKKAAKLKEKYKKDIAAYRAKGKPN 843
>ref|NP_660206.2| high mobility group protein B4 [Homo sapiens].
Length = 186
Score = 133 bits (335), Expect = 2e-31
Identities = 64/144 (44%), Positives = 93/144 (64%), Gaps = 1/144 (0%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGK KP+ +SSY F+ R + K++ P+ V F EFS+KCSE+W+++S EK K+
Sbjct: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFK-DPNAPKRPPSAFFLFCSEYRPKIKGEHPG 520
E +AK DKARY+ EM Y+ G+ KK+ K DP P+RPPS+F LFC ++ ++K E+P
Sbjct: 61 EALAKLDKARYQEEMMNYV---GKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPN 117
Query: 521 LSIGDVAKKLGEMWNNTAADDKQP 592
S+ VAK G+MW+ +K P
Sbjct: 118 WSVVQVAKATGKMWSTATDLEKHP 141
>ref|NP_003137.1| FACT complex subunit SSRP1 [Homo sapiens].
Length = 709
Score = 72.4 bits (176), Expect = 7e-13
Identities = 40/114 (35%), Positives = 63/114 (55%)
Frame = +2
Query: 248 KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 427
++ D + F + S + S +++ K + + KA A+ + K K KK
Sbjct: 486 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKK 540
Query: 428 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 589
KDPNAPKRP SA+ L+ + R KIK +HPG+SI D++KK GE+W + + K+
Sbjct: 541 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 594
Score = 62.4 bits (150), Expect = 7e-10
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = +2
Query: 143 AEEK*LNMGKG-DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTM 319
+ +K + + KG DP P+ MS+Y ++ RE+ K HP S+ ++ SKK E WK M
Sbjct: 531 SRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGM 588
Query: 320 SAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPK 451
S ++K +++ A+ + YE+ MK Y +GE+ K+ K K
Sbjct: 589 SKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSKRDKSKKKKK 632
>ref|NP_001092267.1| TOX high mobility group box family member 2 isoform a [Homo
sapiens].
Length = 506
Score = 63.5 bits (153), Expect = 3e-10
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +2
Query: 407 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 586
K KKK KDPN P++P SA+ LF + + IKG++P + GDV+K + MW++ + K
Sbjct: 233 KNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQK 292
Query: 587 QPXXXXXXXXXXXXXXDIAAYRA----KGKPD 670
Q +AAYRA K PD
Sbjct: 293 QAYKRKTEAAKKEYLKALAAYRASLVSKSSPD 324
Score = 49.7 bits (117), Expect = 5e-06
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Frame = +2
Query: 170 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 349
K DP +P+ +S+YA F + + K ++P A+ F + SK + W ++ ++K ++
Sbjct: 240 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPSAT--FGDVSKIVASMWDSLGEEQKQAYKR 297
Query: 350 MAKADKARYEREMKTY--------IPPKGETKKKFKDPNA----PKRPPSAFFLFCSEYR 493
+A K Y + + Y P +GETK +P A PK+P A S
Sbjct: 298 KTEAAKKEYLKALAAYRASLVSKSSPDQGETKSTQANPPAKMLPPKQPMYAMPGLASFLT 357
Query: 494 PK-IKGEHPGLSIGDVAKKLG 553
P ++ G S +A+ LG
Sbjct: 358 PSDLQAFRSGASPASLARTLG 378
>ref|NP_001092266.1| TOX high mobility group box family member 2 isoform c [Homo
sapiens].
Length = 464
Score = 63.5 bits (153), Expect = 3e-10
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +2
Query: 407 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 586
K KKK KDPN P++P SA+ LF + + IKG++P + GDV+K + MW++ + K
Sbjct: 191 KNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQK 250
Query: 587 QPXXXXXXXXXXXXXXDIAAYRA----KGKPD 670
Q +AAYRA K PD
Sbjct: 251 QAYKRKTEAAKKEYLKALAAYRASLVSKSSPD 282
Score = 49.7 bits (117), Expect = 5e-06
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Frame = +2
Query: 170 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 349
K DP +P+ +S+YA F + + K ++P A+ F + SK + W ++ ++K ++
Sbjct: 198 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPSAT--FGDVSKIVASMWDSLGEEQKQAYKR 255
Query: 350 MAKADKARYEREMKTY--------IPPKGETKKKFKDPNA----PKRPPSAFFLFCSEYR 493
+A K Y + + Y P +GETK +P A PK+P A S
Sbjct: 256 KTEAAKKEYLKALAAYRASLVSKSSPDQGETKSTQANPPAKMLPPKQPMYAMPGLASFLT 315
Query: 494 PK-IKGEHPGLSIGDVAKKLG 553
P ++ G S +A+ LG
Sbjct: 316 PSDLQAFRSGASPASLARTLG 336
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,017,570
Number of extensions: 854596
Number of successful extensions: 2445
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 2398
Number of HSP's successfully gapped: 27
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000407
(1078 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_918585.1| PREDICTED: high mobility group protein B1-like ... 323 1e-88
Alignment gi|NP_034569.1| high mobility group protein B1 [Mus musculus]. 323 1e-88
Alignment gi|XP_889413.1| PREDICTED: high mobility group protein B1-like ... 308 4e-84
Alignment gi|XP_003084790.1| PREDICTED: hypothetical protein LOC667284 [M... 303 1e-82
Alignment gi|XP_003085937.1| PREDICTED: high mobility group protein B1-li... 301 6e-82
Alignment gi|XP_003086707.1| PREDICTED: hypothetical protein LOC667284 [M... 289 3e-78
Alignment gi|NP_032278.1| high mobility group protein B2 [Mus musculus]. 278 7e-75
Alignment gi|NP_032279.1| high mobility group protein B3 [Mus musculus]. 249 3e-66
Alignment gi|XP_358238.3| PREDICTED: high mobility group protein B1-like ... 238 8e-63
Alignment gi|XP_915281.1| PREDICTED: high mobility group protein B1-like ... 238 8e-63
>ref|XP_918585.1| PREDICTED: high mobility group protein B1-like [Mus musculus].
Length = 213
Score = 323 bits (829), Expect = 1e-88
Identities = 155/169 (91%), Positives = 155/169 (91%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPD
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 169
>ref|NP_034569.1| high mobility group protein B1 [Mus musculus].
Length = 215
Score = 323 bits (829), Expect = 1e-88
Identities = 155/169 (91%), Positives = 155/169 (91%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPD
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 169
>ref|XP_889413.1| PREDICTED: high mobility group protein B1-like [Mus musculus].
Length = 215
Score = 308 bits (790), Expect = 4e-84
Identities = 150/169 (88%), Positives = 150/169 (88%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDPKK RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMA ADKARYEREMKTYIPPK ETKKKFKDPNAPKRPPSAFFLFCS YRPKIKGEHPGL
Sbjct: 61 EDMAIADKARYEREMKTYIPPKRETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKK GEMWNNTAADDKQP DIAAYRAKGKPD
Sbjct: 121 SIGDVAKKRGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 169
>ref|XP_003084790.1| PREDICTED: hypothetical protein LOC667284 [Mus musculus].
Length = 399
Score = 303 bits (777), Expect = 1e-82
Identities = 152/180 (84%), Positives = 154/180 (85%), Gaps = 1/180 (0%)
Frame = +2
Query: 134 LCLAEEK*LNMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 313
+CL EE LNMG PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK
Sbjct: 1 MCLEEESQLNMGH--PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 58
Query: 314 TMSAKEKGKFEDMAKADKARYEREMKTYI-PPKGETKKKFKDPNAPKRPPSAFFLFCSEY 490
TMSAKEKGKFEDMAKADKA YER+MKTYI PPKGE KKKFKDPNAPKRPP AFFLF SEY
Sbjct: 59 TMSAKEKGKFEDMAKADKAHYERKMKTYIPPPKGEIKKKFKDPNAPKRPPLAFFLFYSEY 118
Query: 491 RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
PKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPD
Sbjct: 119 YPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 178
>ref|XP_003085937.1| PREDICTED: high mobility group protein B1-like [Mus musculus].
Length = 213
Score = 301 bits (771), Expect = 6e-82
Identities = 150/169 (88%), Positives = 150/169 (88%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDPKK RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMA ADKARYEREMKTYIPPK ETKKKFKDPNAPKRPPSAFFLFCS YRPKIKGEHPGL
Sbjct: 61 EDMAIADKARYEREMKTYIPPKRETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKK GEMWNNTAADDKQ DIAAYRAKGKPD
Sbjct: 121 SIGDVAKKRGEMWNNTAADDKQ--XYEKKAAKEKYEKDIAAYRAKGKPD 167
>ref|XP_003086707.1| PREDICTED: hypothetical protein LOC667284 [Mus musculus].
Length = 433
Score = 289 bits (739), Expect = 3e-78
Identities = 141/167 (84%), Positives = 146/167 (87%), Gaps = 1/167 (0%)
Frame = +2
Query: 173 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 352
GDPKKPRGKMSSYAFF+QTCR+EHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM
Sbjct: 2 GDPKKPRGKMSSYAFFMQTCRKEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 61
Query: 353 AKADKARYEREMKTYI-PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 529
AKADKARY+R++KTYI PPKGE KKKFKDPNAPKRPPSAFFLF S Y PKIKGEHP LSI
Sbjct: 62 AKADKARYKRKIKTYIPPPKGEIKKKFKDPNAPKRPPSAFFLFYSVYYPKIKGEHPDLSI 121
Query: 530 GDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
GDVAKKLGEMWNN AADDKQP DIAAYRAKGKPD
Sbjct: 122 GDVAKKLGEMWNNAAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 168
>ref|NP_032278.1| high mobility group protein B2 [Mus musculus].
Length = 210
Score = 278 bits (710), Expect = 7e-75
Identities = 132/169 (78%), Positives = 142/169 (84%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
ED+AK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE RPKIK EHPGL
Sbjct: 61 EDLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 169
>ref|NP_032279.1| high mobility group protein B3 [Mus musculus].
Length = 200
Score = 249 bits (635), Expect = 3e-66
Identities = 118/169 (69%), Positives = 136/169 (80%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS+KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
++MAKADK RY+REMK Y P KG KK KDPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKKLGEMWNN + ++KQP D+A Y++KGK D
Sbjct: 119 SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKGKFD 167
>ref|XP_358238.3| PREDICTED: high mobility group protein B1-like [Mus musculus].
Length = 188
Score = 238 bits (606), Expect = 8e-63
Identities = 117/145 (80%), Positives = 123/145 (84%)
Frame = +2
Query: 236 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE 415
EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG FEDMAKADKARYEREMKTYIP KGE
Sbjct: 5 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGNFEDMAKADKARYEREMKTYIPHKGE 64
Query: 416 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPX 595
TKKKFKDPNAPKRPP A FLFCSEY PKI G+HPGLSIGD+AKKLG+MW+NTAADDKQP
Sbjct: 65 TKKKFKDPNAPKRPPLA-FLFCSEYCPKITGKHPGLSIGDLAKKLGKMWHNTAADDKQPY 123
Query: 596 XXXXXXXXXXXXXDIAAYRAKGKPD 670
IAA+ AKG+PD
Sbjct: 124 EKKAAKLKEKYEKGIAAHGAKGEPD 148
>ref|XP_915281.1| PREDICTED: high mobility group protein B1-like [Mus musculus].
Length = 188
Score = 238 bits (606), Expect = 8e-63
Identities = 117/145 (80%), Positives = 123/145 (84%)
Frame = +2
Query: 236 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE 415
EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG FEDMAKADKARYEREMKTYIP KGE
Sbjct: 5 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGNFEDMAKADKARYEREMKTYIPHKGE 64
Query: 416 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPX 595
TKKKFKDPNAPKRPP A FLFCSEY PKI G+HPGLSIGD+AKKLG+MW+NTAADDKQP
Sbjct: 65 TKKKFKDPNAPKRPPLA-FLFCSEYCPKITGKHPGLSIGDLAKKLGKMWHNTAADDKQPY 123
Query: 596 XXXXXXXXXXXXXDIAAYRAKGKPD 670
IAA+ AKG+PD
Sbjct: 124 EKKAAKLKEKYEKGIAAHGAKGEPD 148
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,839,321
Number of extensions: 736752
Number of successful extensions: 2166
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 2115
Number of HSP's successfully gapped: 27
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000407
(1078 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001004034.1| high mobility group protein B1 [Sus scrofa]. 322 3e-88
Alignment gi|NP_999228.1| high mobility group protein B2 [Sus scrofa]. 281 3e-76
Alignment gi|XP_003135516.1| PREDICTED: high mobility group protein B3-li... 248 4e-66
Alignment gi|XP_003361389.1| PREDICTED: high mobility group protein B4-li... 140 2e-33
Alignment gi|XP_003353912.1| PREDICTED: FACT complex subunit SSRP1 [Sus s... 73 3e-13
Alignment gi|XP_001928498.3| PREDICTED: thymocyte selection-associated hi... 63 3e-10
Alignment gi|XP_003127034.2| PREDICTED: hypothetical protein LOC100519713... 62 4e-10
Alignment gi|XP_003356765.1| PREDICTED: TOX high mobility group box famil... 57 2e-08
Alignment gi|XP_001929153.1| PREDICTED: TOX high mobility group box famil... 57 2e-08
Alignment gi|XP_003358065.1| PREDICTED: nucleolar transcription factor 1-... 56 3e-08
>ref|NP_001004034.1| high mobility group protein B1 [Sus scrofa].
Length = 215
Score = 322 bits (824), Expect = 3e-88
Identities = 154/169 (91%), Positives = 154/169 (91%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKKLGEMWNNTAADDK P DIAAYRAKGKPD
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYRAKGKPD 169
>ref|NP_999228.1| high mobility group protein B2 [Sus scrofa].
Length = 210
Score = 281 bits (720), Expect = 3e-76
Identities = 133/167 (79%), Positives = 142/167 (85%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGK 664
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGK 167
>ref|XP_003135516.1| PREDICTED: high mobility group protein B3-like [Sus scrofa].
Length = 202
Score = 248 bits (633), Expect = 4e-66
Identities = 118/169 (69%), Positives = 134/169 (79%)
Frame = +2
Query: 164 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 343
M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 344 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 523
++MAKADK RY+REMK Y P KG KK KDPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 524 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 670
SIGDVAKKLGEMWNN + +KQP D+A Y++KGK D
Sbjct: 119 SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFD 167
>ref|XP_003361389.1| PREDICTED: high mobility group protein B4-like [Sus scrofa].
Length = 198
Score = 140 bits (352), Expect = 2e-33
Identities = 64/145 (44%), Positives = 95/145 (65%)
Frame = +2
Query: 158 LNMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 337
+NMGK KP+ +SSY F+ + K++ P+ + F EFS+KCSE+W+++S EK
Sbjct: 1 MNMGKEIQLKPKANVSSYIHFLLNYSNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKA 60
Query: 338 KFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP 517
K+E +AK DKARY+ EM+ Y+ G+ K++ +DP AP+RPPS+F LFC + ++K E+P
Sbjct: 61 KYEALAKLDKARYQEEMRNYV--GGKRKRRKRDPQAPRRPPSSFLLFCQDNYAQLKRENP 118
Query: 518 GLSIGDVAKKLGEMWNNTAADDKQP 592
S+ VAK MW+ T DKQP
Sbjct: 119 NWSVAQVAKASARMWSTTTDVDKQP 143
>ref|XP_003353912.1| PREDICTED: FACT complex subunit SSRP1 [Sus scrofa].
Length = 709
Score = 72.8 bits (177), Expect = 3e-13
Identities = 40/114 (35%), Positives = 63/114 (55%)
Frame = +2
Query: 248 KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 427
++ D + F + S + S +++ K + + KA A+ + K K KK
Sbjct: 486 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPTEVKK 540
Query: 428 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 589
KDPNAPKRP SA+ L+ + R KIK +HPG+SI D++KK GE+W + + K+
Sbjct: 541 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 594
Score = 62.4 bits (150), Expect = 4e-10
Identities = 32/92 (34%), Positives = 51/92 (55%)
Frame = +2
Query: 176 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 355
DP P+ MS+Y ++ RE+ K HP S+ ++ SKK E WK MS ++K +++ A
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKA 600
Query: 356 KADKARYEREMKTYIPPKGETKKKFKDPNAPK 451
+ + YE+ MK Y +GE+ K+ K K
Sbjct: 601 EDARREYEKAMKEYEGGRGESSKRDKSKKKKK 632
>ref|XP_001928498.3| PREDICTED: thymocyte selection-associated high mobility group box
protein TOX [Sus scrofa].
Length = 527
Score = 62.8 bits (151), Expect = 3e-10
Identities = 31/84 (36%), Positives = 45/84 (53%)
Frame = +2
Query: 404 PKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD 583
PK KKK KDPN P++P SA+ LF + + IKG++P + G+V+K + MW+ +
Sbjct: 247 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQ 306
Query: 584 KQPXXXXXXXXXXXXXXDIAAYRA 655
KQ +AAYRA
Sbjct: 307 KQVYKKKTEAAKKEYLKQLAAYRA 330
>ref|XP_003127034.2| PREDICTED: hypothetical protein LOC100519713 [Sus scrofa].
Length = 914
Score = 62.4 bits (150), Expect = 4e-10
Identities = 31/84 (36%), Positives = 46/84 (54%)
Frame = +2
Query: 404 PKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD 583
PK KKK KDPN P++P SA+ LF + + IKG++P + G+V+K + MW++ +
Sbjct: 584 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQ 643
Query: 584 KQPXXXXXXXXXXXXXXDIAAYRA 655
KQ +AAYRA
Sbjct: 644 KQVYKRKTEAAKKEYLKALAAYRA 667
>ref|XP_003356765.1| PREDICTED: TOX high mobility group box family member 4 isoform 2
[Sus scrofa].
Length = 597
Score = 56.6 bits (135), Expect = 2e-08
Identities = 27/82 (32%), Positives = 44/82 (53%)
Frame = +2
Query: 407 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 586
K K+K KDPN P++P SA+ LF + + IKG++P + G+V+K + MW++ + K
Sbjct: 187 KAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 246
Query: 587 QPXXXXXXXXXXXXXXDIAAYR 652
Q +AAY+
Sbjct: 247 QVYKRKTEAAKKEYLKALAAYK 268
>ref|XP_001929153.1| PREDICTED: TOX high mobility group box family member 4 isoform 1
[Sus scrofa].
Length = 620
Score = 56.6 bits (135), Expect = 2e-08
Identities = 27/82 (32%), Positives = 44/82 (53%)
Frame = +2
Query: 407 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 586
K K+K KDPN P++P SA+ LF + + IKG++P + G+V+K + MW++ + K
Sbjct: 210 KAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 269
Query: 587 QPXXXXXXXXXXXXXXDIAAYR 652
Q +AAY+
Sbjct: 270 QVYKRKTEAAKKEYLKALAAYK 291
>ref|XP_003358065.1| PREDICTED: nucleolar transcription factor 1-like [Sus scrofa].
Length = 644
Score = 56.2 bits (134), Expect = 3e-08
Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 29/182 (15%)
Frame = +2
Query: 128 ATLCLAEEK*LNMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSER 307
+TL AE + + G P KP +SY+ + K V +E CS++
Sbjct: 280 STLTKAERQLKDKFDGRPTKP--PPNSYSLYCAELMANMK------DVPSTERMVLCSQQ 331
Query: 308 WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKFKDPN 442
WK +S KEK + K YE E+ ++ E KK+ P
Sbjct: 332 WKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATSPA 391
Query: 443 A--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD 580
+ PKRP SA F+F E R +++ E P LS ++ + L MWN+ +
Sbjct: 392 SKKPSQEAGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEK 451
Query: 581 DK 586
K
Sbjct: 452 KK 453
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,584,083
Number of extensions: 697667
Number of successful extensions: 1592
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 1570
Number of HSP's successfully gapped: 15
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000407
(1078 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrY 551 e-154
Sscrofa_Chr11 402 e-109
Sscrofa_Chr12 295 3e-77
Sscrofa_Chr01 281 4e-73
Sscrofa_Chr02 125 5e-26
gb|GL893511.2| Sus scrofa unplaced genomic scaffold ChrUScaf1396 66 4e-08
Sscrofa_Chr04 66 4e-08
Sscrofa_Chr10 60 3e-06
>Sscrofa_ChrY
|| Length = 1637716
Score = 551 bits (278), Expect = e-154
Identities = 548/637 (86%), Gaps = 17/637 (2%)
Strand = Plus / Plus
Query: 35 aggctgcgtctggctcccgctctcacagccattgcagtacattgagctccatagagacag 94
||||||| ||||||||| ||||||| || ||||||| |||| ||||||||| ||| ||||
Sbjct: 1068402 aggctgcatctggctcctgctctcagagtcattgcaatacactgagctccacagacacag 1068461
Query: 95 cgccggggcaagtgagagccggacgggcactgggcgactctgtgcctcgctgaggaaaaa 154
||| |||||||||||||| |||| |||||||||||| |||||||||||
Sbjct: 1068462 tgccagggcaagtgagagctggaca-----------actctgtgcctcactgaggaaaaa 1068510
Query: 155 taattaaacatgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgca 214
|||||||||||||||||||||||||||||||||| ||| ||||| || ||||| ||
Sbjct: 1068511 taattaaacatgggcaaaggagatcctaagaagctgagcagcaaagtgatatcatt--ca 1068568
Query: 215 ttctttgtgcaaacttgccgggaggagcataagaagaagcacccagatgcttcagtcaac 274
|||||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 1068569 ttctttgtgcaaacttgctgggaggaacataagaagaatcacccagatgcttctgtcagt 1068628
Query: 275 ttctcagagttttctaagaagtgctcagaaaggtggaagaccatgtctgctaaagagaaa 334
||||||||||||| ||||||| ||| || ||||||||||||||||||||||| ||||||
Sbjct: 1068629 ttctcagagttttataagaagcgctgagggaggtggaagaccatgtctgctaaggagaaa 1068688
Query: 335 ggaaaatttgaagacatggcaaaggcggacaaggcccgttatgaaagagaaatgaaaact 394
|||||||||| |||||| |||||||||||||||||| ||||| ||||| |||| |||| |
Sbjct: 1068689 ggaaaatttggagacatagcaaaggcggacaaggcctgttataaaagataaataaaaatt 1068748
Query: 395 tacatacctcctaaaggggagacaaaaaagaagttcaaggatcccaatgcacccaagagg 454
|||||||||||||||||| |||||||||| ||||||||| || ||||||||||||||| |
Sbjct: 1068749 tacatacctcctaaagggaagacaaaaaa-aagttcaagaattccaatgcacccaagaag 1068807
Query: 455 cctccttcggcctttttcttgttttgttctgagtatcgtccaaaaatcaaaggagagcat 514
|||||| | |||||||| |||| ||||||||||| ||||||||| || ||| |||
Sbjct: 1068808 attccttctggatttttcttattttcttctgagtatcatccaaaaatgaa---agaacat 1068864
Query: 515 cctggcctatccattggtgatgttgcaaagaaactgggagagatgtggaataacaccgct 574
|||||||||||||| ||||| |||||||||||| |||| |||||| ||||||||| |||
Sbjct: 1068865 cctggcctatccatcagtgatattgcaaagaaacagggaaagatgtagaataacactgct 1068924
Query: 575 gcagatgacaagcagccttatgaaaagaaggctgctaagctgaaggagaagtacgaaaag 634
|||||| |||||||||||||||||| |||| ||||| |||||||| |||||| |||||
Sbjct: 1068925 gcagatatcaagcagccttatgaaaaaaaggacgctaacctgaaggaaaagtacaaaaag 1068984
Query: 635 gatattgctgcataccgagctaaagggaagcctgatg 671
||||| ||||||||| ||||||||| ||||||||||
Sbjct: 1068985 aatattactgcataccaagctaaaggaaagcctgatg 1069021
Score = 155 bits (78), Expect = 6e-35
Identities = 110/118 (93%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 959 acacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccacta 1018
|||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 1069562 acacactaccaaatgtgtctttagatagccctgtcctggtagtattttcaa-agccacta 1069620
Query: 1019 accttgcctggtacagtatgggggttggtaattggcatggaaatttaaagcaggttct 1076
||||||||||||| |||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 1069621 accttgcctggta-agtatgagggttgtaaattggcatggaaatttaaagcatgttct 1069677
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 897 tgaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtc 942
||||||||||||||| ||| ||||||||||||||||||||| ||||
Sbjct: 1069222 tgaaatgtaaggctgggtaggatttgtttttaaactgtacaatgtc 1069267
>Sscrofa_Chr11
|| Length = 87690581
Score = 402 bits (203), Expect = e-109
Identities = 257/283 (90%)
Strand = Plus / Plus
Query: 796 tgatgatgatgaataagttggttctagcgcagnnnnnnnnncttgtctataaagcattta 855
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7130399 tgatgatgatgaataagttggttctagcgcagtttttttttcttgtctataaagcattta 7130458
Query: 856 acccccctgtacacaactcactccttttaaagnnnnnnnnttgaaatgtaaggctgtgta 915
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7130459 acccccctgtacacaactcactccttttaaagaaaaaaaattgaaatgtaaggctgtgta 7130518
Query: 916 agatttgtttttaaactgtacagtgtcnnnnnnngtatagttaacacactaccgaatgtg 975
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7130519 agatttgtttttaaactgtacagtgtctttttttgtatagttaacacactaccgaatgtg 7130578
Query: 976 tctttagatagccctgtcctggtggtattttcaatagccactaaccttgcctggtacagt 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7130579 tctttagatagccctgtcctggtggtattttcaatagccactaaccttgcctggtacagt 7130638
Query: 1036 atgggggttggtaattggcatggaaatttaaagcaggttcttg 1078
|||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7130639 atgggggttgtaaattggcatggaaatttaaagcaggttcttg 7130681
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 460 ttcggcctttttcttgttttgttctgagtatcgtccaaaaatcaaaggagagcatcctgg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7128988 ttcggcctttttcttgttttgttctgagtatcgtccaaaaatcaaaggagagcatcctgg 7129047
Query: 520 cctatccattggtgatgttgcaaagaaactgggagagatgtggaataacaccgctgcaga 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7129048 cctatccattggtgatgttgcaaagaaactgggagagatgtggaataacaccgctgcaga 7129107
Query: 580 tgacaagcagccttatgaaaagaaggctgctaagctgaaggagaagtacgaaaagg 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7129108 tgacaagcagccttatgaaaagaaggctgctaagctgaaggagaagtacgaaaagg 7129163
Score = 327 bits (165), Expect = 7e-87
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 149 gaaaaataattaaacatgggcaaaggagatcctaagaagccgagaggcaaaatgtcatca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7127974 gaaaaataattaaacatgggcaaaggagatcctaagaagccgagaggcaaaatgtcatca 7128033
Query: 209 tatgcattctttgtgcaaacttgccgggaggagcataagaagaagcacccagatgcttca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7128034 tatgcattctttgtgcaaacttgccgggaggagcataagaagaagcacccagatgcttca 7128093
Query: 269 gtcaacttctcagagttttctaagaagtgctcagaaaggtggaag 313
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7128094 gtcaacttctcagagttttctaagaagtgctcagaaaggtggaag 7128138
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1 tggagagtaatgttacagagcggagagagtgaggaggctgcgtctggctcccgctctcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7125721 tggagagtaatgttacagagcggagagagtgaggaggctgcgtctggctcccgctctcac 7125780
Query: 61 agccattgcagtacattgagctccatagagacagcgccggggcaagtgagagccggacgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7125781 agccattgcagtacattgagctccatagagacagcgccggggcaagtgagagccggacgg 7125840
Query: 121 gcactgggcgactctgtgcctcgctgagg 149
|||||||||||||||||||||||||||||
Sbjct: 7125841 gcactgggcgactctgtgcctcgctgagg 7125869
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 312 agaccatgtctgctaaagagaaaggaaaatttgaagacatggcaaaggcggacaaggccc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7128347 agaccatgtctgctaaagagaaaggaaaatttgaagacatggcaaaggcggacaaggccc 7128406
Query: 372 gttatgaaagagaaatgaaaacttacatacctcctaaaggggagacaaaaaagaagttca 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7128407 gttatgaaagagaaatgaaaacttacatacctcctaaaggggagacaaaaaagaagttca 7128466
Query: 432 aggatcccaatgcacccaagaggcctcc 459
||||||||||||||||||||||||||||
Sbjct: 7128467 aggatcccaatgcacccaagaggcctcc 7128494
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 632 aaggatattgctgcataccgagctaaagggaagcctgatgcagcaaaaaagggagtcgtc 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7130235 aaggatattgctgcataccgagctaaagggaagcctgatgcagcaaaaaagggagtcgtc 7130294
Query: 692 aaggctgagaaaagcaagaaaa 713
||||||||||||||||||||||
Sbjct: 7130295 aaggctgagaaaagcaagaaaa 7130316
>Sscrofa_Chr12
|| Length = 63588571
Score = 295 bits (149), Expect = 3e-77
Identities = 419/506 (82%), Gaps = 21/506 (4%)
Strand = Plus / Minus
Query: 59 acagccattgcagtacattgagctccatagagacagcgccggggcaagtgagagccggac 118
||||||||||||| ||||||||||| |||||||||| ||| ||| ||| |||| |||
Sbjct: 38215455 acagccattgcaggacattgagctcaatagagacagtgccaggg----tgaaagccagac 38215400
Query: 119 gggcactgggcgactctgtgcctcgctgaggaaaaataattaaacatgggcaaaggagat 178
|||| |||||||||||| |||| || || || ||||||||| |||||| ||||||||||
Sbjct: 38215399 aggcaatgggcgactctgagcctagcggaagacaaataattacacatggacaaaggagat 38215340
Query: 179 cctaagaagccgagaggcaaaatgtcatca--tatgcattctttgtgcaaacttgccggg 236
|||||||||| ||||||||||||||||||| ||||||||||||| ||| |||| | |
Sbjct: 38215339 cctaagaagctgagaggcaaaatgtcatcacatatgcattctttgcgcagccttgacag- 38215281
Query: 237 aggagcataagaagaagcacccagatgcttcagtcaacttctcagagttttctaagaagt 296
||||||| |||||||||||||| | ||||| ||||| ||||| || |||||
Sbjct: 38215280 aggagcacaagaagaagcaccctgg------agtcagcttcttggagttgcctgagaagg 38215227
Query: 297 gctcagaaaggtgg-aagaccatgtctgctaaagagaaaggaaaatttgaagacatggca 355
||||||| || || ||||||||||||| ||| | ||||| |||||||| || |||||
Sbjct: 38215226 gctcagagagcagggaagaccatgtctgataagggaaaagggaaatttgaggagctggca 38215167
Query: 356 aaggcggacaaggcccgttatgaaagagaaatgaaaacttacatacctcctaaaggggag 415
||||| ||||| |||| || ||||| ||| ||||||||| ||||||||||||||
Sbjct: 38215166 aaggcagacaatgcccattgtgaaaaagacatgaaaact-------ctcctaaaggggag 38215114
Query: 416 acaaaaaagaagttcaaggatcccaatgcacccaagaggcctccttcggcctttttcttg 475
|||||||||||||||||||||||||||| || |||||||| ||||| |||||| |||||
Sbjct: 38215113 acaaaaaagaagttcaaggatcccaatgtactcaagaggcttcctttggccttattctta 38215054
Query: 476 ttttgttctgagtatcgtccaaaaatcaaaggagagcatcctggcctatccattggtgat 535
|||||| ||||||||| || |||| ||||||||||||| ||||||||||| || | |
Sbjct: 38215053 ttttgtcctgagtatcaccctgaaataaaaggagagcatctgggcctatccatgggcggt 38214994
Query: 536 gttgcaaagaaactgggagagatgtg 561
| ||||||||||||||||||||||||
Sbjct: 38214993 gctgcaaagaaactgggagagatgtg 38214968
Score = 97.6 bits (49), Expect = 1e-17
Identities = 179/225 (79%), Gaps = 5/225 (2%)
Strand = Plus / Minus
Query: 842 ctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnnnttgaaa 901
||||||||| ||||| ||| |||||||||||||||||||||| ||| ||||||
Sbjct: 38214512 ctataaagcctttaaacccactgtacacaactcactcctttttaagaaaaag--ttgaaa 38214455
Query: 902 tgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagttaaca 961
||||||||||||| ||||||||||||||||||| | || || ||| |||| |
Sbjct: 38214454 tgtaaggctgtgtgagatttgtttttaaactgtgccgtatctttctttgtacagtt---a 38214398
Query: 962 cactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccactaacc 1021
|||| | |||||||| ||||| |||||||||| |||| | ||||| || || ||| ||
Sbjct: 38214397 cactgctgaatgtgtttttagctagccctgtctgggtgctgttttcgatggctgctagcc 38214338
Query: 1022 ttgcctggtacagtatgggggttggtaattggcatggaaatttaa 1066
||||||| |||||| |||||| | |||||||||||||||||||
Sbjct: 38214337 ttgcctgatacagtgtgggggctacaaattggcatggaaatttaa 38214293
>Sscrofa_Chr01
|| Length = 315321322
Score = 281 bits (142), Expect = 4e-73
Identities = 229/257 (89%), Gaps = 2/257 (0%)
Strand = Plus / Minus
Query: 59 acagccattgcagtacattgagctccatagagacagcgccggggcaagtgagagccggac 118
|||||||||||| |||| ||||||||||||||| ||| || ||| ||||||||| ||
Sbjct: 227281420 acagccattgcaatacactgagctccatagagatagcattggagcaggtgagagccagat 227281361
Query: 119 gggcactgggcgactctgtgcctcgctgaggaaaaataattaaacatgggcaaaggagat 178
||| ||||| |||||||| | | | |||||| |||||||||||||||||||||||||||
Sbjct: 227281360 gggtactggacgactctg--cttggttgaggacaaataattaaacatgggcaaaggagat 227281303
Query: 179 cctaagaagccgagaggcaaaatgtcatcatatgcattctttgtgcaaacttgccgggag 238
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 227281302 cctaagaagctgagaggcaaaatgtcatcacgtgcattctttgtgcaaacttgccaggag 227281243
Query: 239 gagcataagaagaagcacccagatgcttcagtcaacttctcagagttttctaagaagtgc 298
| ||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 227281242 gtgcacaagaagaagcacccagatgcttcaatcaacttctcagagttttttaagaagtgc 227281183
Query: 299 tcagaaaggtggaagac 315
||||| ||||| |||||
Sbjct: 227281182 tcagagaggtgaaagac 227281166
Score = 69.9 bits (35), Expect = 3e-09
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 1031 acagtatgggggttggtaattggcatggaaatttaaagcaggttctt 1077
||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 227281167 acagtatgggggttgtaaattggcatggaaatttaaagcagattctt 227281121
>Sscrofa_Chr02
|| Length = 162569375
Score = 125 bits (63), Expect = 5e-26
Identities = 156/185 (84%), Gaps = 4/185 (2%)
Strand = Plus / Plus
Query: 203 tcatcatatgcattctttgtgcaaacttgccgggaggagcataagaagaagcacccagat 262
|||||||||||||||||||| |||||||||| ||||||||| ||| || | |||||||
Sbjct: 145829678 tcatcatatgcattctttgtacaaacttgccaggaggagcacaagtagta---cccagat 145829734
Query: 263 gcttcagtcaacttctcagagttttctaagaagtgctcagaaaggtggaagaccatgtct 322
|||||||||| |||||| ||||| ||||| ||||||||||| || |||||||| ||||
Sbjct: 145829735 gcttcagtcaccttctcggagttctctaaaaagtgctcagagagatggaagacagtgtca 145829794
Query: 323 gctaaagagaaaggaaaatttgaagacatggcaaaggcggacaaggcccgttatgaaaga 382
|||||| |||| ||| || ||||||| |||||||| |||||| ||| |||| |||||
Sbjct: 145829795 attaaagaaaaagaaaacttccaagacatagcaaaggcagacaagaccc-ttataaaaga 145829853
Query: 383 gaaat 387
|||||
Sbjct: 145829854 gaaat 145829858
Score = 121 bits (61), Expect = 8e-25
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 950 gtatagttaacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaa 1009
|||||||||||| |||||| ||| ||||||| |||||||| |||||||||||||||||
Sbjct: 145830458 gtatagttaacatactaccaaatacttctttagctagccctggcctggtggtattttcaa 145830517
Query: 1010 tagccactaaccttgcctggtacagtatgggggttggtaattggcatggaaatttaaagc 1069
|||| ||||||||||||| ||||| | ||||||||| |||||||| ||||||||||
Sbjct: 145830518 tagctactaaccttgcctagtacattttgggggttgtaaattggcagacaaatttaaaga 145830577
Query: 1070 aggttcttg 1078
|||||||||
Sbjct: 145830578 aggttcttg 145830586
Score = 79.8 bits (40), Expect = 3e-12
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 545 aaactgggagagatgtggaataacaccgctgcagatgacaagcagccttatgaaaagaag 604
||||||||||| |||||||| ||||| |||||||||||||| |||||| |||||||||||
Sbjct: 145830168 aaactgggagaaatgtggaacaacactgctgcagatgacaatcagcctcatgaaaagaag 145830227
>gb|GL893511.2| Sus scrofa unplaced genomic scaffold ChrUScaf1396
Length = 267902
Score = 65.9 bits (33), Expect = 4e-08
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 972 tgtgtctttagatagccctgtcctgg-tggtattttcaatagccactaaccttgcctggt 1030
||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct: 29464 tgtgtctttagatggcccagtccttaatggtattttcaatagccactaaccctgcctggt 29523
Query: 1031 a 1031
|
Sbjct: 29524 a 29524
>Sscrofa_Chr04
|| Length = 143465943
Score = 65.9 bits (33), Expect = 4e-08
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 972 tgtgtctttagatagccctgtcctgg-tggtattttcaatagccactaaccttgcctggt 1030
||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct: 110586818 tgtgtctttagatggcccagtccttaatggtattttcaatagccactaaccctgcctggt 110586877
Query: 1031 a 1031
|
Sbjct: 110586878 a 110586878
Score = 65.9 bits (33), Expect = 4e-08
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 972 tgtgtctttagatagccctgtcctgg-tggtattttcaatagccactaaccttgcctggt 1030
||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct: 110707957 tgtgtctttagatggcccagtccttaatggtattttcaatagccactaaccctgcctggt 110707898
Query: 1031 a 1031
|
Sbjct: 110707897 a 110707897
>Sscrofa_Chr10
|| Length = 79102373
Score = 60.0 bits (30), Expect = 3e-06
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 896 ttgaaatgtaaggctgtgtaagatttgtttttaaactg 933
||||||||||| | ||||||||||||||||||||||||
Sbjct: 16639116 ttgaaatgtaaaggtgtgtaagatttgtttttaaactg 16639079
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,990,904
Number of extensions: 411
Number of successful extensions: 411
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 27
Length of query: 1078
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1057
Effective length of database: 2,808,413,156
Effective search space: 2968492705892
Effective search space used: 2968492705892
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)