Animal-Genome cDNA 20110601C-000408

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000408
         (1023 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].      454   e-128
Alignment   gi|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].                   453   e-127
Alignment   gi|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos tauru...   447   e-126
Alignment   gi|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos tauru...   442   e-124
Alignment   gi|NP_001099121.1| BOLA class I histocompatibility antigen, alp...   441   e-124
Alignment   gi|NP_001035644.1| major histocompatibility complex, class I, A...   438   e-123
Alignment   gi|NP_001098957.1| hypothetical protein LOC100125916 [Bos tauru...   435   e-122
Alignment   gi|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taur...   431   e-121
Alignment   gi|XP_584616.5| PREDICTED: MHC class I heavy chain [Bos taurus].     431   e-121
Alignment   gi|NP_001180225.1| MHC class I heavy chain [Bos taurus].             431   e-121

>ref|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].
          Length = 361

 Score =  454 bits (1169), Expect = e-128
 Identities = 221/316 (69%), Positives = 252/316 (79%), Gaps = 6/316 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T T AGSHSMRYF T VSRPG GEP+YLEVGYVDDTQFVRFDS+A NPRMEPRA WV+QE
Sbjct: 20   TGTRAGSHSMRYFSTAVSRPGLGEPQYLEVGYVDDTQFVRFDSDAPNPRMEPRARWVKQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWDEETQRAK + Q FR NL  LRGYYNQSE GSHT Q   GC+ G  GR     WQ
Sbjct: 80   GPEYWDEETQRAKGITQVFRVNLNTLRGYYNQSEAGSHTLQWMCGCDVGPDGRLRRGFWQ 139

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            + YDG DY+ LNEDL SWTAAD  A++++RK + + A E  + Y+EGTCVEWLRRYLENG
Sbjct: 140  FGYDGRDYLALNEDLRSWTAADTGAQISKRKMEAAGAAESGRKYVEGTCVEWLRRYLENG 199

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ L RADPPKA+VT HP SD++VTLRCWALGFYPKEISLTW+R G+DQ+QD+E+VETRP
Sbjct: 200  KDTLLRADPPKAHVTHHPISDHEVTLRCWALGFYPKEISLTWQRNGEDQTQDMELVETRP 259

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDG FQKWAALVVP GEEQ YTC V+HEGLQEPLTLRWEP +   +T VGI+ GLVLL 
Sbjct: 260  SGDGNFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEPPQTPFLT-VGIIVGLVLLV 318

Query: 989  -----GAVITV*WKKR 1021
                 GAVI   W+K+
Sbjct: 319  VAVVAGAVI---WRKK 331


>ref|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].
          Length = 359

 Score =  453 bits (1166), Expect = e-127
 Identities = 217/314 (69%), Positives = 255/314 (81%), Gaps = 4/314 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TET AGSHS+RYF+T VSRPG GEPR++ VGYVDDTQFVRFDS+A +PR+EPRA WVEQE
Sbjct: 17   TETRAGSHSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAGDPRVEPRARWVEQE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD+ET++AKD  Q FR  L  LRGYYNQSE GSHT Q  YGC+ G  GR L   WQ
Sbjct: 77   GPEYWDQETRKAKDHAQFFRLGLNTLRGYYNQSEAGSHTLQWMYGCDVGPDGRLLRGFWQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            + Y+G DYI LNEDL SWTAAD AA++++RKW+ +   ER ++YLEGTCVEWL RYLENG
Sbjct: 137  FGYEGRDYIALNEDLRSWTAADTAAQISKRKWEAADVAERQRNYLEGTCVEWLPRYLENG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ L RADPPKA+VT HP S  +VTLRCWALGFYP+EISLTW+R G+DQ+QD+E+VETRP
Sbjct: 197  KDTLLRADPPKAHVTHHPISGREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDGTFQKW ALVVP GEEQ YTC V+HEGLQEPLTLRWEP + S +T +GI+ GLVLL 
Sbjct: 257  SGDGTFQKWVALVVPSGEEQRYTCSVQHEGLQEPLTLRWEPPQTSFLT-MGIIVGLVLLV 315

Query: 989  -GAVIT--V*WKKR 1021
             GAV+   V W K+
Sbjct: 316  TGAVVAGFVIWMKK 329


>ref|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos taurus].
          Length = 361

 Score =  447 bits (1149), Expect = e-126
 Identities = 215/316 (68%), Positives = 252/316 (79%), Gaps = 6/316 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TET AGSHS+RYF+T VSRPG GEPR++ VGYVDDTQFVRFDS+A +PR EPR PW+EQE
Sbjct: 20   TETLAGSHSLRYFYTGVSRPGLGEPRFIAVGYVDDTQFVRFDSDAADPRTEPRVPWMEQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD ET+  KD  Q FR NL  L GYYNQSE GSHT Q  YGC+    GR L  + Q
Sbjct: 80   GPEYWDRETRNLKDAAQTFRVNLNTLLGYYNQSEAGSHTLQWMYGCDVEPDGRFLRGYRQ 139

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG DYI LN+DL SWTAAD AA++T+RKW+ +   ER ++YLEG CVEWLRRYLENG
Sbjct: 140  DAYDGRDYIALNQDLRSWTAADTAAQITKRKWEAAGEAERRRNYLEGRCVEWLRRYLENG 199

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ L RADPPKA+VT HPSSD +VTLRCWALGFYP+EISLTW+  G+DQ+QD+E+VETRP
Sbjct: 200  KDTLLRADPPKAHVTRHPSSDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRP 259

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDGTFQKWAALVVP GEEQ YTC V+HEGL+EPLTLRWEP + S +T +GI+ GLV+L 
Sbjct: 260  SGDGTFQKWAALVVPSGEEQRYTCRVQHEGLREPLTLRWEPPQTSFLT-MGIIVGLVVLV 318

Query: 989  -----GAVITV*WKKR 1021
                 GAVI   W+K+
Sbjct: 319  VAVVAGAVI---WRKK 331


>ref|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos taurus].
          Length = 358

 Score =  442 bits (1138), Expect = e-124
 Identities = 214/316 (67%), Positives = 249/316 (78%), Gaps = 6/316 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TET AGSHS+RYF T VSRPG GEPR++ VGYVDDTQF RFDS+A NPR EPR PW+EQE
Sbjct: 17   TETLAGSHSLRYFSTAVSRPGLGEPRFIAVGYVDDTQFTRFDSDAPNPREEPRVPWMEQE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD  T+  KD  Q FR  L  LRGYYNQSE GSHT Q   GC+ G  GR L   WQ
Sbjct: 77   GLEYWDRNTRIYKDTAQTFRVYLNALRGYYNQSEAGSHTLQWMSGCDVGPDGRLLRGFWQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            + YDG +YI LNEDL SWTAAD AA++T+RKW+ + A E  ++Y+EG CVE LRRYLENG
Sbjct: 137  FGYDGRNYIALNEDLRSWTAADTAAQITKRKWEAAGAAEGERNYVEGRCVEGLRRYLENG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ L RADPPKA+VT HP S+ +VTLRCWALGFYP+EISLTW+REG+DQ+QD+E+VETRP
Sbjct: 197  KDALLRADPPKAHVTHHPISEREVTLRCWALGFYPEEISLTWQREGEDQTQDMELVETRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDGTFQKWAALVVP GEEQ YTC V+HEGLQEPLTLRWEP + S +T +GI+ GLVLL 
Sbjct: 257  SGDGTFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEPPQTSFLT-MGIIVGLVLLV 315

Query: 989  -----GAVITV*WKKR 1021
                 GAVI   W+K+
Sbjct: 316  VAVVAGAVI---WRKK 328


>ref|NP_001099121.1| BOLA class I histocompatibility antigen, alpha chain BL3-6 precursor
            [Bos taurus].
          Length = 360

 Score =  441 bits (1134), Expect = e-124
 Identities = 212/306 (69%), Positives = 243/306 (79%), Gaps = 3/306 (0%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TET AGSHSMRYF T VSRPG GEPRYLEVGYVDDTQFVRFDS+A+NPRMEPR  WV+QE
Sbjct: 17   TETRAGSHSMRYFSTAVSRPGFGEPRYLEVGYVDDTQFVRFDSDARNPRMEPRTRWVKQE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD  T+ AK   Q+FR  L  LRGYYNQSE GSHT Q   GC  G  GR L    Q
Sbjct: 77   GPEYWDRNTRNAKGNAQSFRVGLNTLRGYYNQSEAGSHTLQWMSGCYVGPDGRLLRGFMQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            Y YDG DY+ LNEDL SWTAAD  A++T+RKW+     E  ++YLEG CVEWLRR++ENG
Sbjct: 137  YGYDGRDYLALNEDLRSWTAADTEAQITKRKWEAEGYAEVQRNYLEGECVEWLRRHMENG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ L RADPPKA+VT HP SD +VTLRCWALGFYP+EISLTW+  G+DQ+QD+E+VETRP
Sbjct: 197  KDTLLRADPPKAHVTHHPISDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDGTFQKWAALVVP GEEQ YTC V+HEGLQEPLTL+WEP + S +T +GI+ GLVLL 
Sbjct: 257  SGDGTFQKWAALVVPSGEEQKYTCRVQHEGLQEPLTLKWEPPQPSFLT-MGIIVGLVLLV 315

Query: 989  --GAVI 1000
              GAV+
Sbjct: 316  VTGAVV 321


>ref|NP_001035644.1| major histocompatibility complex, class I, A [Bos taurus].
          Length = 362

 Score =  438 bits (1127), Expect = e-123
 Identities = 215/315 (68%), Positives = 250/315 (79%), Gaps = 5/315 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TETWAGSHS+RYF+T VSRPG GEPR++ VGYVDDTQFVRFDS+A +PR+EP A WVEQE
Sbjct: 20   TETWAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPDPRIEPTARWVEQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYW +ETQR KD  Q FR  L  LRGYYNQSE GSHT Q  YGC+ G  G  L  + Q
Sbjct: 80   GPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQEMYGCDVGPDGL-LRGYDQ 138

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            +AYDG DYI LNEDL SWTAAD AA+VT+   + +    R + YLEG CVEWLRRYL  G
Sbjct: 139  FAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARVRIYLEGKCVEWLRRYLVTG 198

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ L RADPPK +V  HP SD++VTLRCWALGFYP EISLTW+R+G+DQ+QD+E+VETRP
Sbjct: 199  KDTLLRADPPKTHVAHHPISDHEVTLRCWALGFYPDEISLTWQRDGEDQTQDMELVETRP 258

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDGTFQKWAALVVP GEEQ YTCHV+HEGLQEPLTLRWEP + S I I+GI+ GLVLL 
Sbjct: 259  SGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQPS-IPIMGIIVGLVLLM 317

Query: 989  --GAVIT--V*WKKR 1021
              GAV+T  + W+K+
Sbjct: 318  VTGAVVTGAMIWRKK 332


>ref|NP_001098957.1| hypothetical protein LOC100125916 [Bos taurus].
          Length = 363

 Score =  435 bits (1119), Expect = e-122
 Identities = 207/306 (67%), Positives = 244/306 (79%), Gaps = 3/306 (0%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TET AGSHS+RYF+T VSRPG GEPR++ VGYVDDTQFVRFDS+A NPRMEPRA WVEQE
Sbjct: 20   TETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPNPRMEPRARWVEQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD ET+ +KD  Q FR +L  LRGYYNQSE GSHT QL YGC  G  G       Q
Sbjct: 80   GPEYWDRETRNSKDTAQGFRVDLNTLRGYYNQSEAGSHTLQLMYGCYVGPDGSLRRGFTQ 139

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            Y YDG DY+ LNEDL SWTA +  A++++RK + +   E+ ++YLEG CVEWLRRYLENG
Sbjct: 140  YGYDGRDYLALNEDLRSWTAVETMAQISKRKVEAAGVAEKQRNYLEGRCVEWLRRYLENG 199

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ L RADPPKA+VT HP S  +VTLRCWALGFYP+EISLTW+R G+DQ+QD+E+VETRP
Sbjct: 200  KDTLLRADPPKAHVTRHPISGREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRP 259

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDG FQKWAAL+VP GEEQ YTC V+HEGLQEPLTL+WEP + S +T +GI+ GLVLL 
Sbjct: 260  SGDGNFQKWAALLVPSGEEQKYTCQVQHEGLQEPLTLKWEPPQPSFLT-MGIIVGLVLLV 318

Query: 989  --GAVI 1000
              GAV+
Sbjct: 319  VTGAVV 324


>ref|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taurus].
          Length = 437

 Score =  431 bits (1108), Expect = e-121
 Identities = 206/315 (65%), Positives = 246/315 (78%), Gaps = 5/315 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TETWAGSHS+ YF T VSRPG GEPR+  VGYVDDTQF RFDS+A NPRMEPRAPW+EQE
Sbjct: 94   TETWAGSHSLSYFCTCVSRPGLGEPRFFAVGYVDDTQFARFDSDAPNPRMEPRAPWMEQE 153

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYW+  T+ AK   Q  R  L  LRG+YNQSE GSHT Q  +GC+ G  GR L   WQ
Sbjct: 154  GPEYWEAMTRDAKKAQQRLRTGLNTLRGFYNQSEAGSHTLQWVFGCDVGPEGRLLRGIWQ 213

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG DY+ LNEDL SWTAA+  A++T+RKW+ S   E  ++YLE  CV+WL R+LE G
Sbjct: 214  NAYDGADYLALNEDLRSWTAANTVAQITKRKWETSGEAEFQRNYLEVKCVQWLLRHLETG 273

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ L RADPPK +V  HP SD +VTLRCWALGFYP+EISLTW+++G+DQ+QD+E+VETRP
Sbjct: 274  KDTLLRADPPKTHVAHHPISDREVTLRCWALGFYPEEISLTWQQDGEDQTQDMELVETRP 333

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDGTFQKWAALVVP GEEQ YTCHV+HEGLQEPL+LRW+P + S I I+GI+ GLVLL 
Sbjct: 334  SGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLSLRWKPPQPS-IPIMGIIVGLVLLM 392

Query: 989  --GAVIT--V*WKKR 1021
              GAV+T  V W+ +
Sbjct: 393  VTGAVVTGAVIWRNK 407


>ref|XP_584616.5| PREDICTED: MHC class I heavy chain [Bos taurus].
          Length = 437

 Score =  431 bits (1108), Expect = e-121
 Identities = 206/315 (65%), Positives = 246/315 (78%), Gaps = 5/315 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TETWAGSHS+ YF T VSRPG GEPR+  VGYVDDTQF RFDS+A NPRMEPRAPW+EQE
Sbjct: 94   TETWAGSHSLSYFCTCVSRPGLGEPRFFAVGYVDDTQFARFDSDAPNPRMEPRAPWMEQE 153

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYW+  T+ AK   Q  R  L  LRG+YNQSE GSHT Q  +GC+ G  GR L   WQ
Sbjct: 154  GPEYWEAMTRDAKKAQQRLRTGLNTLRGFYNQSEAGSHTLQWVFGCDVGPEGRLLRGIWQ 213

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG DY+ LNEDL SWTAA+  A++T+RKW+ S   E  ++YLE  CV+WL R+LE G
Sbjct: 214  NAYDGADYLALNEDLRSWTAANTVAQITKRKWETSGEAEFQRNYLEVKCVQWLLRHLETG 273

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ L RADPPK +V  HP SD +VTLRCWALGFYP+EISLTW+++G+DQ+QD+E+VETRP
Sbjct: 274  KDTLLRADPPKTHVAHHPISDREVTLRCWALGFYPEEISLTWQQDGEDQTQDMELVETRP 333

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDGTFQKWAALVVP GEEQ YTCHV+HEGLQEPL+LRW+P + S I I+GI+ GLVLL 
Sbjct: 334  SGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLSLRWKPPQPS-IPIMGIIVGLVLLM 392

Query: 989  --GAVIT--V*WKKR 1021
              GAV+T  V W+ +
Sbjct: 393  VTGAVVTGAVIWRNK 407


>ref|NP_001180225.1| MHC class I heavy chain [Bos taurus].
          Length = 359

 Score =  431 bits (1107), Expect = e-121
 Identities = 213/306 (69%), Positives = 243/306 (79%), Gaps = 3/306 (0%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TET AGSHSMRYF T VSRPG GEPRYLEVGYVDDTQFVRFDS+A NPR+EP A WVEQE
Sbjct: 17   TETRAGSHSMRYFSTAVSRPGLGEPRYLEVGYVDDTQFVRFDSDAPNPRIEPTARWVEQE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYW +ETQR KD  Q FR  L  LRGYYNQSE GSHT Q  YGC+ G  G  L  + Q
Sbjct: 77   GPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQEMYGCDVGPDGL-LRGYDQ 135

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            +AYDG DYI LNEDL SWTAAD AA+VT+   + +    R + YLEGTCVEWLRRYLE G
Sbjct: 136  FAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARVRIYLEGTCVEWLRRYLETG 195

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ L RADPPKA+VT H  S ++VTLRCWALGFYP++ISLTW+R G+DQ+QD+E+VETRP
Sbjct: 196  KDTLLRADPPKAHVTHHSISGHEVTLRCWALGFYPEDISLTWQRNGEDQTQDMELVETRP 255

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDG FQKWAALVVP GEEQ YTC V+HEGLQEPLTL+WEP + S +T +GI+ GLVLL 
Sbjct: 256  SGDGNFQKWAALVVPSGEEQKYTCRVQHEGLQEPLTLKWEPPQPSFLT-MGIIVGLVLLV 314

Query: 989  --GAVI 1000
              GAV+
Sbjct: 315  VTGAVV 320


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,545,846
Number of extensions: 1256774
Number of successful extensions: 6005
Number of sequences better than 1.0e-05: 103
Number of HSP's gapped: 5860
Number of HSP's successfully gapped: 103
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000408
         (1023 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].      430   e-121
Alignment   gi|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].      423   e-118
Alignment   gi|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].      416   e-116
Alignment   gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].          390   e-108
Alignment   gi|NP_001018646.1| MHC class Ib [Canis lupus familiaris].            390   e-108
Alignment   gi|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein...   202   3e-52
Alignment   gi|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large s...   141   1e-33
Alignment   gi|XP_850173.1| PREDICTED: similar to T-cell surface glycoprote...    86   4e-17
Alignment   gi|XP_860822.1| PREDICTED: similar to T-cell surface glycoprote...    86   4e-17
Alignment   gi|NP_001014403.1| major histocompatibility complex, class II, ...    82   6e-16

>ref|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].
          Length = 361

 Score =  430 bits (1106), Expect = e-121
 Identities = 205/312 (65%), Positives = 244/312 (78%), Gaps = 2/312 (0%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T T AGSHS+RYF+T VSRPG G+PR++ VGYVDDTQFVRFDS+A   RMEPRAPW+EQE
Sbjct: 20   TLTRAGSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD ET+  K+  Q +R +L  LRGYYNQSE GSHT Q  YGC+ G  GR L  + Q
Sbjct: 80   GPEYWDRETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQ 139

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG DYI LNEDL SWTAAD AA++T+RKW+ +   E  ++YLE TCVEWLRRYLE G
Sbjct: 140  DAYDGADYIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMG 199

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +E L RA+PP   VT HP SD++VTLRCWALGFYP EI+LTW+R+G+DQ+QD EVV+TRP
Sbjct: 200  KETLLRAEPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRP 259

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVA--GLVL 985
            +GDGTFQKWAA+VVP G+EQ YTCHV+HEGL EP+T RWEPS LS I IV I A   LV+
Sbjct: 260  AGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPSPLSTIVIVSIAALVLLVV 319

Query: 986  LGAVITV*WKKR 1021
             G +  V W+K+
Sbjct: 320  SGVIGAVIWRKQ 331


>ref|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].
          Length = 358

 Score =  423 bits (1087), Expect = e-118
 Identities = 203/312 (65%), Positives = 243/312 (77%), Gaps = 2/312 (0%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T T AGSHS+RYF+T VSRPG G+PR++ VGYVDDTQFVRFDS+A   RMEPRAPWVEQE
Sbjct: 17   TLTRAGSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWVEQE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD +T+  K+  + FR +L  LRGYYNQSE GSHTFQ  +GC+ G  GR L  + Q
Sbjct: 77   GPEYWDPQTRTIKETARTFRVDLDTLRGYYNQSEAGSHTFQWMFGCDLGPGGRLLRGYSQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG DYI LNEDL SWTAAD AA++T+RK + +      ++YLE TCVEWLRRYLE G
Sbjct: 137  DAYDGADYIALNEDLRSWTAADAAAQITRRKREAAGDAGHLRNYLETTCVEWLRRYLEMG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +E L RA+PP   VT HP SD++VTLRCWALGFYP EI+LTW+R+G+DQ+QD EVV+TRP
Sbjct: 197  KETLLRAEPPSTRVTRHPVSDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVA--GLVL 985
            +GDGTFQKWAA+VVP G+EQ YTCHV+HEGL EP+T RWEPS LS I IV I A   LV+
Sbjct: 257  AGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLVEPVTRRWEPSPLSTIVIVSIAALVLLVV 316

Query: 986  LGAVITV*WKKR 1021
             G +  V W+K+
Sbjct: 317  AGVIGAVIWRKQ 328


>ref|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].
          Length = 361

 Score =  416 bits (1070), Expect = e-116
 Identities = 194/312 (62%), Positives = 244/312 (78%), Gaps = 2/312 (0%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T T AGSHS+R+FHT VSRPG G+P Y+ VGYVDDTQF+RF+S+A +P++EPRA W+EQE
Sbjct: 20   TLTRAGSHSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASPKVEPRARWMEQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G E+W+E+T+ AK   Q  R NL    GYYNQSE GSHTFQ T GC+ G  GR L  + Q
Sbjct: 80   GPEFWEEQTEIAKVHAQTSRSNLQTALGYYNQSEAGSHTFQWTSGCDVGPDGRLLRGYEQ 139

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            +AYDG DY+ L+EDL SWTAAD AA++T+RKW+ + A + ++ YL+G CV+ L +YLE G
Sbjct: 140  FAYDGADYLALDEDLRSWTAADAAAQITRRKWEAAGAAQYYRVYLQGECVQSLLKYLERG 199

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +E LQ  DPPK Y+T HP SD++VTLRCWALGFYP EI+LTW+R+G+DQ+QD EVV+TRP
Sbjct: 200  KETLQLTDPPKIYLTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRP 259

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVA--GLVL 985
            +GDGTFQKWAA+VVP G+EQ YTCHV+HEGL EP+T RWEPS LS I IV I A   LV+
Sbjct: 260  AGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPSPLSTIVIVSIAALVLLVV 319

Query: 986  LGAVITV*WKKR 1021
             G +  V W+K+
Sbjct: 320  AGVIGAVIWRKQ 331


>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].
          Length = 381

 Score =  390 bits (1002), Expect = e-108
 Identities = 188/315 (59%), Positives = 234/315 (74%), Gaps = 6/315 (1%)
 Frame = +2

Query: 95   ETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEG 274
            +T AGSHS+R+ +TVVSRPGHGEPR+  V YVDDT F RF+SE +  R EP   W+EQEG
Sbjct: 26   QTSAGSHSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEG 85

Query: 275  QEYWDEETQRAKDLVQNFRRNLM-ILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
             EYW+E T  ++   Q  RR L  + + Y NQS TGSHTFQ   GC+ G  GR L  + +
Sbjct: 86   PEYWEERTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQR 145

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            +AYDG DYITL+EDL SW   D  A++T+RKWD +   E  K++LEG C+EWLRR+LENG
Sbjct: 146  HAYDGLDYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENG 205

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            RE LQRADPPK  VT  P S+++VTL+CWALGFYP EI+LTW+R+G+DQ+QD E+VETRP
Sbjct: 206  RETLQRADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRP 265

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
             GDGTFQKWAA+VVP GEEQ YTCH+ H+ L +P+TLRWEP   S I IV I+AGLVLL 
Sbjct: 266  GGDGTFQKWAAVVVPSGEEQRYTCHILHKSLPKPITLRWEPPPQSTIPIVSIIAGLVLLV 325

Query: 989  --GAVI--TV*WKKR 1021
              GA++   V W+K+
Sbjct: 326  ITGAMLVGVVIWRKK 340


>ref|NP_001018646.1| MHC class Ib [Canis lupus familiaris].
          Length = 381

 Score =  390 bits (1002), Expect = e-108
 Identities = 188/315 (59%), Positives = 234/315 (74%), Gaps = 6/315 (1%)
 Frame = +2

Query: 95   ETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEG 274
            +T AGSHS+R+ +TVVSRPGHGEPR+  V YVDDT F RF+SE +  R EP   W+EQEG
Sbjct: 26   QTSAGSHSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEG 85

Query: 275  QEYWDEETQRAKDLVQNFRRNLM-ILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
             EYW+E T  ++   Q  RR L  + + Y NQS TGSHTFQ   GC+ G  GR L  + +
Sbjct: 86   PEYWEERTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQR 145

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            +AYDG DYITL+EDL SW   D  A++T+RKWD +   E  K++LEG C+EWLRR+LENG
Sbjct: 146  HAYDGLDYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENG 205

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            RE LQRADPPK  VT  P S+++VTL+CWALGFYP EI+LTW+R+G+DQ+QD E+VETRP
Sbjct: 206  RETLQRADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRP 265

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
             GDGTFQKWAA+VVP GEEQ YTCH+ H+ L +P+TLRWEP   S I IV I+AGLVLL 
Sbjct: 266  GGDGTFQKWAAVVVPSGEEQRYTCHILHKSLTKPITLRWEPPPQSTIPIVSIIAGLVLLV 325

Query: 989  --GAVI--TV*WKKR 1021
              GA++   V W+K+
Sbjct: 326  ITGAMLVGVVIWRKK 340


>ref|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor
           (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis
           familiaris].
          Length = 315

 Score =  202 bits (515), Expect = 3e-52
 Identities = 106/282 (37%), Positives = 156/282 (55%), Gaps = 3/282 (1%)
 Frame = +2

Query: 95  ETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEG 274
           ET  G +S+ +F+T +SRP  G P +    Y++D  F  +DSE    +  PR PW + EG
Sbjct: 22  ETQGGPYSLSFFYTGLSRPSDGFPSFQATAYLNDQDFFHYDSETG--KAIPRYPWSQMEG 79

Query: 275 QEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQY 454
            E W++E++  K     F   L  +  YY   E GSHTFQ  +GCE   + +   A W+Y
Sbjct: 80  IEDWEKESKLQKAREDIFMVTLKDIMEYYKDKE-GSHTFQGMFGCEL-QNNKNSGAFWRY 137

Query: 455 AYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAH-ERFKSYLEGTCVEWLRRYLENG 631
           AYDG ++I  N+++ +W   D AA  T++KW+    + +R K+YLE  C   L+RYLE G
Sbjct: 138 AYDGRNFIEFNKEIPAWVPQDPAALNTKKKWEAEEVYVQRAKAYLEEECPVMLQRYLEYG 197

Query: 632 REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
           +  L R +PP   +T H + +   TL+CW  GFYP+EI L W  +  D  +        P
Sbjct: 198 KTYLDRQEPPSVSITSHGTPEGIQTLKCWVSGFYPQEIDLHW-IQADDTQETKSGGALLP 256

Query: 812 SGDGTFQKWAALVVPPGE--EQSYTCHVKHEGLQEPLTLRWE 931
           SG+ T+Q W  +   P +    SY+C VKH  L +PLT+ W+
Sbjct: 257 SGNNTYQAWVVMSASPQDLASFSYSCLVKHSSLSQPLTVLWD 298


>ref|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor
           (FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor
           transporter, alpha chain) [Canis familiaris].
          Length = 354

 Score =  141 bits (355), Expect = 1e-33
 Identities = 93/301 (30%), Positives = 146/301 (48%), Gaps = 3/301 (0%)
 Frame = +2

Query: 104 AGSH-SMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWV-EQEGQ 277
           A SH S+ Y  T VS P  G P +   G++   Q++ +++     + EP   WV E +  
Sbjct: 23  ADSHLSLLYHLTAVSAPPPGTPAFWASGWLGPQQYLSYNN--LRAQAEPYGAWVWENQVS 80

Query: 278 EYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQYA 457
            YW++ET   +     F   L  L       + G +T Q   GCE G     +    ++A
Sbjct: 81  WYWEKETTDLRTKEGLFLEALKAL------GDGGPYTLQGLLGCELGPDNTSVPVA-KFA 133

Query: 458 YDGEDYITLNEDLSSWTAADMAARVTQRKW-DKSRAHERFKSYLEGTCVEWLRRYLENGR 634
            +GED++T +  L +W           ++W  ++ A  + +++L  +C + L  +LE GR
Sbjct: 134 LNGEDFMTFDPKLGTWNGDWPETETVSKRWMQQAGAVSKERTFLLYSCPQRLLGHLERGR 193

Query: 635 EMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPS 814
             L+  +PP   +   P S     L C A  FYP E+ L + R G          +  P+
Sbjct: 194 GNLEWKEPPSMRLKARPGSPGFSVLTCSAFSFYPPELQLRFLRNGLAAGSGEG--DFGPN 251

Query: 815 GDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLLGA 994
           GDG+F  W++L V  G+E  Y C V+H GL +PLT+  E    S++ +VGIV G +LL A
Sbjct: 252 GDGSFHAWSSLTVKSGDEHHYRCLVQHAGLPQPLTVELESPAKSSVPVVGIVIGFLLLTA 311

Query: 995 V 997
           V
Sbjct: 312 V 312


>ref|XP_850173.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
            (CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
            thymocyte antigen) isoform 1 [Canis familiaris].
          Length = 357

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 77/290 (26%), Positives = 124/290 (42%), Gaps = 12/290 (4%)
 Frame = +2

Query: 185  YVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYWDEETQRAKDLV-QNFRRNLMILRGYY 361
            ++DD Q   +D++  N     R PW + +     +EE   A  L   N+    ++   + 
Sbjct: 49   WLDDVQIHAWDNK--NRTFVFRWPWAQGDLS---NEERMEADQLFYSNYIFYNLVYHDHV 103

Query: 362  NQSETG-SHTFQLTYGCEEGSHGRPLHAHWQYAYDGEDYITLNEDLSSW-------TAAD 517
            +Q +       Q+  GCE    G P     +YAY G D I      +SW       + A 
Sbjct: 104  SQWQLEYPFQVQMEIGCELRI-GEPFSGFMRYAYQGTDLIRFQN--TSWRPSPKGGSRAQ 160

Query: 518  MAARV-TQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQRADPPKAYVTCHPS-S 691
             A+ V  Q   D    HE    Y    C  ++   L+ G+  LQR   P+A+++  PS  
Sbjct: 161  QASSVFNQYHEDNEFTHELITGY----CPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPG 216

Query: 692  DNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDGTFQKWAALVVPPGEEQ 871
              ++ L C   GFYPK + + W R G+ + Q  +  +  P  DGT+    +L V   E  
Sbjct: 217  PGRLQLVCHVSGFYPKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAA 275

Query: 872  SYTCHVKHEGL-QEPLTLRWEPSRLSAITIVGIVAGLVLLGAVITV*WKK 1018
              +C V+H  L  + + L WE      +  + ++  LVLL  +    WK+
Sbjct: 276  GLSCRVRHSSLGGQDMVLHWEQPHSVGLVFLVVIVPLVLLAGLAWWLWKR 325


>ref|XP_860822.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
            (CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
            thymocyte antigen) isoform 2 [Canis familiaris].
          Length = 352

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 77/290 (26%), Positives = 124/290 (42%), Gaps = 12/290 (4%)
 Frame = +2

Query: 185  YVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYWDEETQRAKDLV-QNFRRNLMILRGYY 361
            ++DD Q   +D++  N     R PW + +     +EE   A  L   N+    ++   + 
Sbjct: 44   WLDDVQIHAWDNK--NRTFVFRWPWAQGDLS---NEERMEADQLFYSNYIFYNLVYHDHV 98

Query: 362  NQSETG-SHTFQLTYGCEEGSHGRPLHAHWQYAYDGEDYITLNEDLSSW-------TAAD 517
            +Q +       Q+  GCE    G P     +YAY G D I      +SW       + A 
Sbjct: 99   SQWQLEYPFQVQMEIGCELRI-GEPFSGFMRYAYQGTDLIRFQN--TSWRPSPKGGSRAQ 155

Query: 518  MAARV-TQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQRADPPKAYVTCHPS-S 691
             A+ V  Q   D    HE    Y    C  ++   L+ G+  LQR   P+A+++  PS  
Sbjct: 156  QASSVFNQYHEDNEFTHELITGY----CPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPG 211

Query: 692  DNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDGTFQKWAALVVPPGEEQ 871
              ++ L C   GFYPK + + W R G+ + Q  +  +  P  DGT+    +L V   E  
Sbjct: 212  PGRLQLVCHVSGFYPKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAA 270

Query: 872  SYTCHVKHEGL-QEPLTLRWEPSRLSAITIVGIVAGLVLLGAVITV*WKK 1018
              +C V+H  L  + + L WE      +  + ++  LVLL  +    WK+
Sbjct: 271  GLSCRVRHSSLGGQDMVLHWEQPHSVGLVFLVVIVPLVLLAGLAWWLWKR 320


>ref|NP_001014403.1| major histocompatibility complex, class II, DQ beta 1 [Canis lupus
           familiaris].
          Length = 269

 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 10/191 (5%)
 Frame = +2

Query: 449 QYAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAH-ERFKSYLEGTCVEWLRRYLE 625
           +Y Y+ E+++  + D+  + A     R     W++ +   +R ++ L+  C      Y  
Sbjct: 61  KYIYNREEFVRFDSDVGEFRAVTELGRPDAEYWNRQKDEMDRVRAELDTVC---RHNYGR 117

Query: 626 NGREMLQRADPPKAYVTCHPSSDNKVT----LRCWALGFYPKEISLTWRREGQDQSQDVE 793
                LQR   P   VT  PS    +     L C    FYP +I + W R  Q+Q+  V 
Sbjct: 118 EELTTLQRRVEPT--VTIFPSKTEVLNHHNLLVCSVTDFYPGQIKVRWFRNDQEQTAGVV 175

Query: 794 VVETRPSGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAIT-----I 958
                 +GD TFQ    L + P     YTCHV+H  LQ P+T++W     SA +     I
Sbjct: 176 STPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHASLQSPITVQWRAQSESAQSKMLSGI 235

Query: 959 VGIVAGLVLLG 991
            G V GL+ LG
Sbjct: 236 GGFVLGLIFLG 246


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,324,881
Number of extensions: 1292188
Number of successful extensions: 5968
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 5913
Number of HSP's successfully gapped: 25
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000408
         (1023 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp...   465   e-131
Alignment   gi|NP_005505.2| major histocompatibility complex, class I, B pr...   462   e-130
Alignment   gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ...   454   e-128
Alignment   gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c...   453   e-127
Alignment   gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1...   453   e-127
Alignment   gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al...   451   e-127
Alignment   gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c...   439   e-123
Alignment   gi|NP_001091949.1| HLA class I histocompatibility antigen, alph...   427   e-120
Alignment   gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c...   427   e-120
Alignment   gi|NP_001091948.1| HLA class I histocompatibility antigen, alph...   240   1e-63

>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
            [Homo sapiens].
          Length = 365

 Score =  465 bits (1196), Expect = e-131
 Identities = 215/304 (70%), Positives = 253/304 (83%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T+TWAGSHSMRYF T VSRPG GEPR++ VGYVDDTQFVRFDS+A + RMEPRAPW+EQE
Sbjct: 20   TQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD+ET+  K   Q  R +L  LRGYYNQSE GSHT Q+ YGC+ GS GR L  + Q
Sbjct: 80   GPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQ 139

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG+DYI LNEDL SWTAADMAA++T+RKW+ +   E+ ++YL+GTCVEWLRRYLENG
Sbjct: 140  DAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENG 199

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +E LQR DPPK ++T HP SD++ TLRCWALGFYP EI+LTW+R+G+DQ+QD E+VETRP
Sbjct: 200  KETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRP 259

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLLG 991
            +GDGTFQKWAA+VVP GEEQ YTCHV+HEGL +PLTLRWE S    I IVGI+AGLVLLG
Sbjct: 260  AGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLG 319

Query: 992  AVIT 1003
            AVIT
Sbjct: 320  AVIT 323


>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
            sapiens].
          Length = 362

 Score =  462 bits (1190), Expect = e-130
 Identities = 213/303 (70%), Positives = 248/303 (81%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TETWAGSHSMRYF+T VSRPG GEPR++ VGYVDDTQFVRFDS+A +PR EPRAPW+EQE
Sbjct: 20   TETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD  TQ  K   Q  R +L  LRGYYNQSE GSHT Q  YGC+ G  GR L  H Q
Sbjct: 80   GPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHDQ 139

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            YAYDG+DYI LNEDL SWTAAD AA++TQRKW+ +R  E+ ++YLEG CVEWLRRYLENG
Sbjct: 140  YAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENG 199

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ L+RADPPK +VT HP SD++ TLRCWALGFYP EI+LTW+R+G+DQ+QD E+VETRP
Sbjct: 200  KDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRP 259

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLLG 991
            +GD TFQKWAA+VVP GEEQ YTCHV+HEGL +PLTLRWEPS  S + IVGIVAGL +L 
Sbjct: 260  AGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLA 319

Query: 992  AVI 1000
             V+
Sbjct: 320  VVV 322


>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
            [Homo sapiens].
          Length = 365

 Score =  454 bits (1169), Expect = e-128
 Identities = 213/304 (70%), Positives = 249/304 (81%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T+TWAGSHSMRYF T VSRPG GEPR++ VGYVDDTQFVRFDS+A + +MEPRAPW+EQE
Sbjct: 20   TQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD+ET+  K   Q  R NL  LRGYYNQSE GSHT Q+ YGC+ G  GR L  + Q
Sbjct: 80   GPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQ 139

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG+DYI LNEDL SWTAADMAA++T+RKW+   A E+ + YLEG CV+ LRRYLENG
Sbjct: 140  DAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENG 199

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +E LQR DPPK ++T HP SD++ TLRCWALGFYP EI+LTW+R+G+DQ+QD E+VETRP
Sbjct: 200  KETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRP 259

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLLG 991
            +GDGTFQKWAA+VVP GEEQ YTCHV+HEGL +PLTLRWE S    I IVGI+AGLVLLG
Sbjct: 260  AGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLG 319

Query: 992  AVIT 1003
            AVIT
Sbjct: 320  AVIT 323


>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor [Homo
            sapiens].
          Length = 338

 Score =  453 bits (1166), Expect = e-127
 Identities = 214/316 (67%), Positives = 251/316 (79%), Gaps = 6/316 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TETWAGSHSMRYF   VSRPG GEPR++ +GYVDDTQFVRFDS++  PRMEPRAPWVEQE
Sbjct: 20   TETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSACPRMEPRAPWVEQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYW+EET+  K   Q  R NL  LRGYYNQSE  SHT Q   GC+ GS GR L  + Q
Sbjct: 80   GPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGSDGRLLRGYEQ 139

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            YAYDG+DY+ LNEDL SWTAAD AA++++RK + +   E+ ++YLEGTCVEWL RYLENG
Sbjct: 140  YAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRAYLEGTCVEWLHRYLENG 199

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +EMLQRADPPK +VT HP  D + TLRCWALGFYP EI LTW+R+G+DQ+QDVE+VETRP
Sbjct: 200  KEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPAEIILTWQRDGEDQTQDVELVETRP 259

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLLG 991
            +GDGTFQKWAA+VVP GEEQ YTCHV+HEGL EPL LRW+ S L  I I+GIVAGLV+L 
Sbjct: 260  AGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRWKQSSLPTIPIMGIVAGLVVLA 319

Query: 992  AVIT------V*WKKR 1021
            AV+T      V W+K+
Sbjct: 320  AVVTGAAVAAVLWRKK 335


>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
            [Homo sapiens].
          Length = 366

 Score =  453 bits (1166), Expect = e-127
 Identities = 216/310 (69%), Positives = 250/310 (80%), Gaps = 6/310 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TETWA SHSMRYF T VSRPG GEPR++ VGYVDDTQFVRFDS+A +PR EPRAPWVEQE
Sbjct: 20   TETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD ETQ  K   Q  R +L  LRGYYNQSE GSHT Q  YGC+ G  GR L  + Q
Sbjct: 80   GPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQRMYGCDLGPDGRLLRGYDQ 139

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG+DYI LNEDL SWTAAD AA++TQRK + +RA E+ ++YLEGTCVEWLRRYLENG
Sbjct: 140  SAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQLRAYLEGTCVEWLRRYLENG 199

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +E LQRA+PPK +VT HP SD++ TLRCWALGFYP EI+LTW+R+G+DQ+QD E+VETRP
Sbjct: 200  KETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRP 259

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAG----- 976
            +GDGTFQKWAA+VVP G+EQ YTCH++HEGLQEPLTL WEPS    I I+GIVAG     
Sbjct: 260  AGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEPSSQPTIPIMGIVAGLAVLV 319

Query: 977  -LVLLGAVIT 1003
             L +LGAV+T
Sbjct: 320  VLAVLGAVVT 329


>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
            [Homo sapiens].
          Length = 366

 Score =  451 bits (1159), Expect = e-127
 Identities = 215/310 (69%), Positives = 250/310 (80%), Gaps = 6/310 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TETWA SHSMRYF T VSRPG GEPR++ VGYVDDTQFVRFDS+A +PR EPRAPWVEQE
Sbjct: 20   TETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD ETQ+ K   Q  R +L  LRGYYNQSE GSHT Q   GC+ G  GR L  + Q
Sbjct: 80   GPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQRMSGCDLGPDGRLLRGYDQ 139

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG+DYI LNEDL SWTAAD AA++TQRK + +RA E+ ++YLEGTCVEWLRRYLENG
Sbjct: 140  SAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQLRAYLEGTCVEWLRRYLENG 199

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +E LQRA+PPK +VT HP SD++ TLRCWALGFYP EI+LTW+R+G+DQ+QD E+VETRP
Sbjct: 200  KETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRP 259

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAG----- 976
            +GDGTFQKWAA+VVP G+EQ YTCH++HEGLQEPLTL WEPS    I I+GIVAG     
Sbjct: 260  AGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEPSSQPTIPIMGIVAGLAVLV 319

Query: 977  -LVLLGAVIT 1003
             L +LGAV+T
Sbjct: 320  VLAVLGAVVT 329


>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor [Homo
            sapiens].
          Length = 358

 Score =  439 bits (1130), Expect = e-123
 Identities = 201/316 (63%), Positives = 251/316 (79%), Gaps = 6/316 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T+TWAGSHS++YFHT VSRPG GEPR++ VGYVDDTQFVRFD++A +PRM PRAPW+EQE
Sbjct: 17   TQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD ET+ A+D  Q FR NL  LRGYYNQSE GSHT Q  +GCE G  GR L  + Q
Sbjct: 77   GSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            +AYDG+DY+TLNEDL SWTA D AA+++++K + +   E  ++YLE TCVEWL +YLE G
Sbjct: 137  FAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +E L   +PPK +VT HP SD++ TLRCWALGFYP EI+LTW+++G+  +QD E+VETRP
Sbjct: 197  KETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLLG 991
            +GDGTFQKWAA+VVP GEEQ YTCHV+HEGL EP+TLRW+P+    I IVGI+AGLVLLG
Sbjct: 257  AGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQPTIPIVGIIAGLVLLG 316

Query: 992  AVIT------V*WKKR 1021
            +V++      V W+K+
Sbjct: 317  SVVSGAVVAAVIWRKK 332


>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
            precursor [Homo sapiens].
          Length = 442

 Score =  427 bits (1098), Expect = e-120
 Identities = 206/316 (65%), Positives = 244/316 (77%), Gaps = 6/316 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T+TWAGSHS+RYF T VSRPG GEPRY+ V YVDDTQF+RFDS+A  PRMEPR PWVEQE
Sbjct: 17   TDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G +YW+  T  AK   Q  R  L  L   YNQSE GSHT Q   GC+ G  GR L  + Q
Sbjct: 77   GPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            +AYDG+DYI+LNEDL SWTAAD  A++TQR ++     E F++YLEG C+E LRRYLENG
Sbjct: 137  HAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +E LQRADPPKA+V  HP SD++ TLRCWALGFYP EI+LTW+R+G++Q+QD E+VETRP
Sbjct: 197  KETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLLG 991
            +GDGTFQKWAA+VVPPGEEQ YTCHV+HEGL +PL LRWE S    I IVGIVAGLV+LG
Sbjct: 257  AGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLG 316

Query: 992  AVIT------V*WKKR 1021
            AV+T      V W+K+
Sbjct: 317  AVVTGAVVAAVMWRKK 332


>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
            precursor [Homo sapiens].
          Length = 346

 Score =  427 bits (1098), Expect = e-120
 Identities = 206/316 (65%), Positives = 244/316 (77%), Gaps = 6/316 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T+TWAGSHS+RYF T VSRPG GEPRY+ V YVDDTQF+RFDS+A  PRMEPR PWVEQE
Sbjct: 17   TDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G +YW+  T  AK   Q  R  L  L   YNQSE GSHT Q   GC+ G  GR L  + Q
Sbjct: 77   GPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            +AYDG+DYI+LNEDL SWTAAD  A++TQR ++     E F++YLEG C+E LRRYLENG
Sbjct: 137  HAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +E LQRADPPKA+V  HP SD++ TLRCWALGFYP EI+LTW+R+G++Q+QD E+VETRP
Sbjct: 197  KETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLLG 991
            +GDGTFQKWAA+VVPPGEEQ YTCHV+HEGL +PL LRWE S    I IVGIVAGLV+LG
Sbjct: 257  AGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLG 316

Query: 992  AVIT------V*WKKR 1021
            AV+T      V W+K+
Sbjct: 317  AVVTGAVVAAVMWRKK 332


>ref|NP_001091948.1| HLA class I histocompatibility antigen, alpha chain F isoform 3
           precursor [Homo sapiens].
          Length = 254

 Score =  240 bits (613), Expect = 1e-63
 Identities = 117/188 (62%), Positives = 138/188 (73%)
 Frame = +2

Query: 92  TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
           T+TWAGSHS+RYF T VSRPG GEPRY+ V YVDDTQF+RFDS+A  PRMEPR PWVEQE
Sbjct: 17  TDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQE 76

Query: 272 GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
           G +YW+  T  AK   Q  R  L  L   YNQSE GSHT Q   GC+ G  GR L  + Q
Sbjct: 77  GPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQ 136

Query: 452 YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
           +AYDG+DYI+LNEDL SWTAAD  A++TQR ++     E F++YLEG C+E LRRYLENG
Sbjct: 137 HAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENG 196

Query: 632 REMLQRAD 655
           +E LQRA+
Sbjct: 197 KETLQRAE 204


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,364,673
Number of extensions: 1258476
Number of successful extensions: 5662
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 5543
Number of HSP's successfully gapped: 89
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000408
         (1023 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001020379.1| MHC class I family member [Mus musculus].         429   e-120
Alignment   gi|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alp...   418   e-117
Alignment   gi|XP_001003852.3| PREDICTED: h-2 class I histocompatibility an...   418   e-117
Alignment   gi|NP_001001892.2| H-2 class I histocompatibility antigen, K-W2...   417   e-117
Alignment   gi|XP_003085179.1| PREDICTED: h-2 class I histocompatibility an...   414   e-116
Alignment   gi|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].    414   e-116
Alignment   gi|XP_003085178.1| PREDICTED: h-2 class I histocompatibility an...   414   e-116
Alignment   gi|XP_003086969.1| PREDICTED: h-2 class I histocompatibility an...   413   e-115
Alignment   gi|XP_979719.1| PREDICTED: h-2 class I histocompatibility antig...   412   e-115
Alignment   gi|XP_997416.3| PREDICTED: h-2 class I histocompatibility antig...   411   e-115

>ref|NP_001020379.1| MHC class I family member [Mus musculus].
          Length = 382

 Score =  429 bits (1103), Expect = e-120
 Identities = 202/305 (66%), Positives = 245/305 (80%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            TET AGSHSMRYF T VSRPG GEPR++ VGYVDDTQFVRFD +A+NPR EP APW+EQE
Sbjct: 17   TETLAGSHSMRYFETAVSRPGLGEPRFISVGYVDDTQFVRFDGDAENPRYEPWAPWMEQE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYW+ ETQ AKD VQ+FR +L  L  YYNQSE GSHTFQ   GC+ GS GR L  + Q
Sbjct: 77   GPEYWERETQIAKDNVQSFRGSLRNLLLYYNQSEGGSHTFQRLSGCDLGSDGRLLRGYLQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            +AY+G+DYI LNEDL +WTAADMAA +T+RKW+++ A E +K+YLEG CVEWLRRYLE G
Sbjct: 137  FAYEGQDYIALNEDLKTWTAADMAALITRRKWEQAGAAELYKAYLEGECVEWLRRYLERG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +E L R DPPKA+VT HP  +  VTLRCWALGFYP +I+LTW+  G++ +QD+E+VETRP
Sbjct: 197  KETLLRTDPPKAHVTHHPRPEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLLG 991
            +GDGTFQKWA++VVP G+EQ YTCHV HEGL EPLTLRWEP   S ++ + I+  L++LG
Sbjct: 257  AGDGTFQKWASVVVPLGKEQKYTCHVHHEGLPEPLTLRWEPPP-STVSNMIIIEVLIVLG 315

Query: 992  AVITV 1006
            AVI +
Sbjct: 316  AVINI 320


>ref|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alpha chain precursor
           [Mus musculus].
          Length = 325

 Score =  418 bits (1074), Expect = e-117
 Identities = 192/281 (68%), Positives = 230/281 (81%)
 Frame = +2

Query: 92  TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
           T+T AGSHSMRYF T VSRPG GEPR++ VGYVDDTQFVRFDS+A+ PRMEPRAPW+EQE
Sbjct: 20  TQTQAGSHSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAPWMEQE 79

Query: 272 GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
           G EYW+ ETQRAK   Q+F  +L  L GYYNQSE+GSHT Q  YGC+ GS GR L  + Q
Sbjct: 80  GPEYWERETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQ 139

Query: 452 YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
           YAYDG DYI LNEDL +WTAAD+AA +T+RKW+++ A E +++YLE  CVEWL RYLE G
Sbjct: 140 YAYDGRDYIALNEDLKTWTAADVAAIITRRKWEQAGAAEYYRAYLEAECVEWLLRYLELG 199

Query: 632 REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
           +E L R DPPK +VT HP S+  VTLRCWALGFYP +I+LTW+  G++ +QD+E+VETRP
Sbjct: 200 KETLLRTDPPKTHVTHHPGSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRP 259

Query: 812 SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEP 934
           +GDGTFQKWA++VVP G+EQ+YTCHV HEGL EPLTLRWEP
Sbjct: 260 AGDGTFQKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEP 300


>ref|XP_001003852.3| PREDICTED: h-2 class I histocompatibility antigen, K-D alpha chain
            isoform 9 [Mus musculus].
          Length = 385

 Score =  418 bits (1074), Expect = e-117
 Identities = 198/306 (64%), Positives = 245/306 (80%), Gaps = 2/306 (0%)
 Frame = +2

Query: 95   ETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEG 274
            ET AGSHSMRYF T +SRPG  EPR++ VGYVDDTQFVRFD +A+NPR EPRAPW+E EG
Sbjct: 18   ETRAGSHSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEG 77

Query: 275  QEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQY 454
            +EYW+ ETQ AK   Q+FR +L   + YYNQSE G HTFQL +GC+ GS GR L  + Q+
Sbjct: 78   REYWERETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQF 137

Query: 455  AYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGR 634
            AYDG DYI LNEDL++WTAAD+AA +T+RKW+++ A E +K+YLEG CVE LRRYL+ G+
Sbjct: 138  AYDGRDYIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGK 197

Query: 635  EMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPS 814
            E L R DPPKA+VT HP S+  VTLRCWALGFYP +I+LTW+  G++ +QD+E+VETRP+
Sbjct: 198  ETLLRTDPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPA 257

Query: 815  GDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWE--PSRLSAITIVGIVAGLVLL 988
            GDGTFQKWAA+VVP G+EQ+YTCHV+HEGL E LTLRWE  PS  S + I+  +A LV+L
Sbjct: 258  GDGTFQKWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWEPPPSTDSNMVIMAPMAVLVVL 317

Query: 989  GAVITV 1006
            GAVI +
Sbjct: 318  GAVIII 323


>ref|NP_001001892.2| H-2 class I histocompatibility antigen, K-W28 alpha chain isoform 1
            [Mus musculus].
          Length = 369

 Score =  417 bits (1071), Expect = e-117
 Identities = 198/303 (65%), Positives = 240/303 (79%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T+T AG HS+RYF T VSRPG GEPRY+EVGYVDDT+FVRFDS+A+NPR EPRA W+EQE
Sbjct: 17   TQTRAGPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYW+ ETQ+AK   Q+FR +L  L GYYNQS+ GSHT Q+  GCE GS GR L  + Q
Sbjct: 77   GPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            YAYDG DYI LNEDL +WTAADMAA +T+ KW+++   ER ++YLEGTCVEWLRRYL+NG
Sbjct: 137  YAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
               L R D PKA+VT H   ++KVTLRCWALGFYP +I+LTW+  G++  QD+E+VETRP
Sbjct: 197  NATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLLG 991
            +GDGTFQKWA++VVP G+EQ YTCHV H+GL EPLTLRWEP   S ++ +  VA LV+LG
Sbjct: 257  AGDGTFQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRWEPPP-STVSNMATVAVLVVLG 315

Query: 992  AVI 1000
            A I
Sbjct: 316  AAI 318


>ref|XP_003085179.1| PREDICTED: h-2 class I histocompatibility antigen, K-D alpha chain
            [Mus musculus].
          Length = 388

 Score =  414 bits (1065), Expect = e-116
 Identities = 197/309 (63%), Positives = 244/309 (78%), Gaps = 5/309 (1%)
 Frame = +2

Query: 95   ETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEG 274
            ET AGSHSMRYF T +SRPG  EPR++ VGYVDDTQFVRFD +A+NPR EPRAPW+E EG
Sbjct: 18   ETRAGSHSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEG 77

Query: 275  QEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQY 454
            +EYW+ ETQ AK   Q+FR +L   + YYNQSE G HTFQL +GC+ GS GR L  + Q+
Sbjct: 78   REYWERETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQF 137

Query: 455  AYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGR 634
            AYDG DYI LNEDL++WTAAD+AA +T+RKW+++ A E +K+YLEG CVE LRRYL+ G+
Sbjct: 138  AYDGRDYIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGK 197

Query: 635  EMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPS 814
            E L R DPPKA+VT HP S+  VTLRCWALGFYP +I+LTW+  G++ +QD+E+VETRP+
Sbjct: 198  ETLLRTDPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPA 257

Query: 815  GDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRW-----EPSRLSAITIVGIVAGL 979
            GDGTFQKWAA+VVP G+EQ+YTCHV+HEGL E LTLRW      PS  S + I+  +A L
Sbjct: 258  GDGTFQKWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWGKEKPPPSTDSNMVIMAPMAVL 317

Query: 980  VLLGAVITV 1006
            V+LGAVI +
Sbjct: 318  VVLGAVIII 326


>ref|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].
          Length = 368

 Score =  414 bits (1063), Expect = e-116
 Identities = 196/309 (63%), Positives = 241/309 (77%), Gaps = 4/309 (1%)
 Frame = +2

Query: 92   TETWA----GSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPW 259
            TET A    G HSMRYF T VSRPG GEP ++ VGYVDDTQFVRFD +A+NPRMEPRAPW
Sbjct: 17   TETRAVSRPGPHSMRYFETAVSRPGLGEPWFISVGYVDDTQFVRFDGDAENPRMEPRAPW 76

Query: 260  VEQEGQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLH 439
            +EQEG EYW+ ETQ AK   Q F+ +L  L  YYNQS  GSHTFQ  YGC+ GS GR L 
Sbjct: 77   MEQEGPEYWERETQIAKGHEQGFQGSLRNLLHYYNQSAGGSHTFQRMYGCDLGSDGRLLR 136

Query: 440  AHWQYAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRY 619
             +WQ+AYDG DYI LN+DL +WTAAD+AA++T+R+W++    E  ++YLE  C+EWLRRY
Sbjct: 137  GYWQFAYDGSDYIALNQDLKTWTAADLAAQITRRRWEQGGVAETLRAYLEDPCLEWLRRY 196

Query: 620  LENGREMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVV 799
            LE G+E L R DPPK +VT HP S++ VTLRCWALGFYP +I+LTW+  G++ +QD+E+V
Sbjct: 197  LELGKETLLRTDPPKVHVTHHPRSEDDVTLRCWALGFYPADITLTWQLNGEELTQDMELV 256

Query: 800  ETRPSGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGL 979
            ETRP+GDGTFQKWA++VVP G+EQ+YTCHV HEGL EPLTLRWEP R S  + + I+A L
Sbjct: 257  ETRPAGDGTFQKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEP-RPSRDSNMVIIAVL 315

Query: 980  VLLGAVITV 1006
            V+LG VI +
Sbjct: 316  VVLGVVIII 324


>ref|XP_003085178.1| PREDICTED: h-2 class I histocompatibility antigen, K-D alpha chain
            [Mus musculus].
          Length = 413

 Score =  414 bits (1063), Expect = e-116
 Identities = 195/302 (64%), Positives = 242/302 (80%), Gaps = 2/302 (0%)
 Frame = +2

Query: 107  GSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYW 286
            GSHSMRYF T +SRPG  EPR++ VGYVDDTQFVRFD +A+NPR EPRAPW+E EG+EYW
Sbjct: 50   GSHSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEGREYW 109

Query: 287  DEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQYAYDG 466
            + ETQ AK   Q+FR +L   + YYNQSE G HTFQL +GC+ GS GR L  + Q+AYDG
Sbjct: 110  ERETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQFAYDG 169

Query: 467  EDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQ 646
             DYI LNEDL++WTAAD+AA +T+RKW+++ A E +K+YLEG CVE LRRYL+ G+E L 
Sbjct: 170  RDYIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGKETLL 229

Query: 647  RADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDGT 826
            R DPPKA+VT HP S+  VTLRCWALGFYP +I+LTW+  G++ +QD+E+VETRP+GDGT
Sbjct: 230  RTDPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPAGDGT 289

Query: 827  FQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWE--PSRLSAITIVGIVAGLVLLGAVI 1000
            FQKWAA+VVP G+EQ+YTCHV+HEGL E LTLRWE  PS  S + I+  +A LV+LGAVI
Sbjct: 290  FQKWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWEPPPSTDSNMVIMAPMAVLVVLGAVI 349

Query: 1001 TV 1006
             +
Sbjct: 350  II 351


>ref|XP_003086969.1| PREDICTED: h-2 class I histocompatibility antigen, D-P alpha
            chain-like isoform 1 [Mus musculus].
          Length = 362

 Score =  413 bits (1062), Expect = e-115
 Identities = 194/315 (61%), Positives = 243/315 (77%), Gaps = 5/315 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T+T AGSHS+RYF T VSRPG GEPRY+EVGYVD+T+FVRFDS+A+NPR EPRA W+EQE
Sbjct: 20   TQTRAGSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYW+ ET+RAK   Q+FR +L     YYNQS  GSHT Q   GC+  S GR L  +WQ
Sbjct: 80   GPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQ 139

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            +AYDG DYI LNEDL +WTAADMAA++T+RKW+++ A ER ++YLEG CVEWLRRYL+NG
Sbjct: 140  FAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNG 199

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
               L R DPPKA+VT H   +  VTLRCWALGFYP +I+LTW+  G++ +Q++E+VETRP
Sbjct: 200  NATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRP 259

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEP-----SRLSAITIVGIVAG 976
            +GDGTFQKWA++VVP G+EQ YTCHV+HEGL EPLTLRWEP     +    I +  ++  
Sbjct: 260  AGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWEPPSSTKTNTVIIAVPVVLGA 319

Query: 977  LVLLGAVITV*WKKR 1021
            +V+LGAV+    K+R
Sbjct: 320  VVILGAVMAFVMKRR 334


>ref|XP_979719.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha chain
            isoform 5 [Mus musculus].
          Length = 383

 Score =  412 bits (1059), Expect = e-115
 Identities = 194/304 (63%), Positives = 240/304 (78%)
 Frame = +2

Query: 95   ETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEG 274
            ET AGSHSMRYF T +SRPG  EPR++ VGYVDDTQFVRFD +A+NPR EPRAPW+E EG
Sbjct: 18   ETRAGSHSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEG 77

Query: 275  QEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQY 454
            +EYW+ ETQ AK   Q+FR +L   + YYNQSE G HTFQL +GC+ GS GR L  + Q+
Sbjct: 78   REYWERETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQF 137

Query: 455  AYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGR 634
            AYDG DYI LNEDL++WTAAD+AA +T+RKW+++ A E +K+YLEG CVE LRRYL+ G+
Sbjct: 138  AYDGRDYIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGK 197

Query: 635  EMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPS 814
            E L R DPPKA+VT HP S+  VTLRCWALGFYP +I+LTW+  G++ +QD+E+VETRP+
Sbjct: 198  ETLLRTDPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPA 257

Query: 815  GDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLLGA 994
            GDGTFQKWAA+VVP G+EQ+YTCHV+HEGL E LTLRW   R      +  +A LV+LGA
Sbjct: 258  GDGTFQKWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWGKERSQISLRMVPMAVLVVLGA 317

Query: 995  VITV 1006
            VI +
Sbjct: 318  VIII 321


>ref|XP_997416.3| PREDICTED: h-2 class I histocompatibility antigen, L-D alpha
            chain-like isoform 3 [Mus musculus].
          Length = 373

 Score =  411 bits (1056), Expect = e-115
 Identities = 199/305 (65%), Positives = 240/305 (78%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T+  AGSHSMRYF TVVSRPG GEPRY+ VGYVDDT+FVRFDS+A+ PR EPRA W+EQE
Sbjct: 25   TQNRAGSHSMRYFETVVSRPGLGEPRYVSVGYVDDTEFVRFDSDAEKPRYEPRARWMEQE 84

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYW+  TQ AK   Q FR +L  L GYYNQS  GSHT Q  YGC+ GS GR L  + Q
Sbjct: 85   GPEYWERITQIAKGHEQWFRVSLRKLLGYYNQSAGGSHTLQEMYGCDVGSDGRLLRGYRQ 144

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG DYI LNEDL +WTA D+AA +T+RKW++  A E +K+Y+EG CV+ LRRYLE G
Sbjct: 145  SAYDGCDYIALNEDLKTWTAKDVAALITRRKWEQDGAAEYYKAYMEGECVQSLRRYLELG 204

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +EML R DPPKA+VT HP S+  VTLRCWALGFYP +I+LTW+  G++ +QD+E+VETRP
Sbjct: 205  KEMLLRTDPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRP 264

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLLG 991
            +GDGTFQKWAA+VVP G+EQ+YTCHV HEGL EPLTLRWEP   S ++ + I+A LV+LG
Sbjct: 265  AGDGTFQKWAAVVVPLGKEQNYTCHVHHEGLPEPLTLRWEPPP-STVSNMVIIAVLVVLG 323

Query: 992  AVITV 1006
            AVI +
Sbjct: 324  AVIII 328


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,628,323
Number of extensions: 1034175
Number of successful extensions: 4399
Number of sequences better than 1.0e-05: 131
Number of HSP's gapped: 4324
Number of HSP's successfully gapped: 138
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000408
         (1023 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].               655   0.0  
Alignment   gi|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].               451   e-127
Alignment   gi|XP_003128290.1| PREDICTED: patr class I histocompatibility a...   446   e-125
Alignment   gi|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].               444   e-125
Alignment   gi|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].               443   e-125
Alignment   gi|NP_998933.1| MHC class I antigen 7 [Sus scrofa].                  434   e-122
Alignment   gi|XP_003356639.1| PREDICTED: patr class I histocompatibility a...   432   e-121
Alignment   gi|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].               421   e-118
Alignment   gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].               410   e-115
Alignment   gi|XP_003361021.1| PREDICTED: class I histocompatibility antige...   258   3e-69

>ref|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].
          Length = 355

 Score =  655 bits (1689), Expect = 0.0
 Identities = 311/324 (95%), Positives = 312/324 (96%)
 Frame = +2

Query: 50   MESQMXXXXXXXXXTETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQ 229
            MESQM         TETWAGSHSMRYFHTVVSRPG+GEPRYLEVGYVDDTQFVRFDSEAQ
Sbjct: 1    MESQMLLLVLLGALTETWAGSHSMRYFHTVVSRPGYGEPRYLEVGYVDDTQFVRFDSEAQ 60

Query: 230  NPRMEPRAPWVEQEGQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGC 409
            NPRMEPRAPWVEQEGQEYWDEETQR KDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGC
Sbjct: 61   NPRMEPRAPWVEQEGQEYWDEETQRVKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGC 120

Query: 410  EEGSHGRPLHAHWQYAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLE 589
            EEGSHGRPLH HWQYAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLE
Sbjct: 121  EEGSHGRPLHVHWQYAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLE 180

Query: 590  GTCVEWLRRYLENGREMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREG 769
            GTCVEWLRRYLENGREMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREG
Sbjct: 181  GTCVEWLRRYLENGREMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREG 240

Query: 770  QDQSQDVEVVETRPSGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSA 949
            QDQSQDVEVVETRPSGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSA
Sbjct: 241  QDQSQDVEVVETRPSGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSA 300

Query: 950  ITIVGIVAGLVLLGAVITV*WKKR 1021
            ITIVGIVAGLVLLGAVITV WKKR
Sbjct: 301  ITIVGIVAGLVLLGAVITVIWKKR 324


>ref|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].
          Length = 361

 Score =  451 bits (1161), Expect = e-127
 Identities = 218/315 (69%), Positives = 251/315 (79%), Gaps = 5/315 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T T  G HS+RYF T VSRP  G+PR++ VGYVDDTQFVRFDS+A NPRMEPRAPW+EQE
Sbjct: 17   TGTREGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            GQEYWDEET+ A    Q FR NL  LRGYYNQSE GSHT Q  YGC+ G     L  + Q
Sbjct: 77   GQEYWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG DYI LNEDL SWTAAD AA++T+RKW+ +   E+ +SYLEG CVEWL++YL+ G
Sbjct: 137  DAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
               LQRA+PPK +VT HPSSD  VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRP
Sbjct: 197  NNTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDGTFQKWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P +   + IVGI+ GLVL+ 
Sbjct: 257  SGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ-PPVPIVGIIVGLVLVL 315

Query: 989  --GAVI--TV*WKKR 1021
              GAV+   V W+K+
Sbjct: 316  VAGAVVAGVVIWRKK 330


>ref|XP_003128290.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
            chain-like [Sus scrofa].
          Length = 361

 Score =  446 bits (1146), Expect = e-125
 Identities = 214/314 (68%), Positives = 253/314 (80%), Gaps = 5/314 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T T AG HS+ YF+T VSRP  G+ R++ VGYVDDTQFVRFD+ A NPRMEPR PW++QE
Sbjct: 17   TGTQAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            GQ+YWDEET++ KD  Q +   L  LRGYYNQSE GSHT Q  +GC  G  G  LH + Q
Sbjct: 77   GQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG DYI LNEDL SWTAADMAA++++RKW+ + A E ++SYL+G CVE LRRYLE G
Sbjct: 137  DAYDGADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ LQRA+PPK +VT HPSSD  VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRP
Sbjct: 197  KDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDGTFQKWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P++   + IVGI+ GLVL+ 
Sbjct: 257  SGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ-PPVPIVGIIVGLVLVL 315

Query: 989  --GAVI--TV*WKK 1018
              GAV+   V W+K
Sbjct: 316  VAGAVVAGVVIWRK 329


>ref|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].
          Length = 361

 Score =  444 bits (1143), Expect = e-125
 Identities = 215/315 (68%), Positives = 255/315 (80%), Gaps = 5/315 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T T AG HS+ YF+T VSRP  G+ R++EVGYVDDTQFVRFDS+A NPRMEPRAPW+E+E
Sbjct: 17   TGTQAGPHSLSYFYTAVSRPDLGDSRFIEVGYVDDTQFVRFDSDALNPRMEPRAPWIEKE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            GQ+YWDEET++ K+  Q  R +L  LRGYYNQSE GSHT Q  +GC  G  G  L  + Q
Sbjct: 77   GQDYWDEETRKVKETAQINRVDLKTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLRGYRQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG DYI LNEDL SWTAAD AA++T+RKW+ +   E+++SYL+G CVE LR YLE G
Sbjct: 137  DAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQWRSYLQGLCVESLREYLEMG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ LQRADPPK +VT HPSSD  VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRP
Sbjct: 197  KDTLQRADPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDGTFQKWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P++   + IVGI+ GLVL+ 
Sbjct: 257  SGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ-PPVPIVGIIVGLVLVL 315

Query: 989  --GAVI--TV*WKKR 1021
              GAV+   V W+K+
Sbjct: 316  VAGAVVAGVVIWRKK 330


>ref|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].
          Length = 364

 Score =  443 bits (1139), Expect = e-125
 Identities = 213/315 (67%), Positives = 251/315 (79%), Gaps = 5/315 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T TWAG HS+ YF+T VSRP  G+ R++ VGYVDDTQFVRFDS+A NPRMEPRAPW++QE
Sbjct: 20   TGTWAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQE 79

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            GQ+YWD ET+      Q  R NL  LRGYYNQSE GSHT Q+ YGC+ G  G  L  + Q
Sbjct: 80   GQDYWDRETRNVMGSAQTDRVNLKTLRGYYNQSEAGSHTIQVMYGCDVGPDGLLLRGYRQ 139

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG DYI LNEDL SWTAAD AA++T+RKW+ + A E  +SYL+G CVE L++YLE G
Sbjct: 140  DAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADAAEGERSYLQGLCVEGLQKYLEMG 199

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ LQRA+PPK +VT HPSSD  VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRP
Sbjct: 200  KDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRP 259

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDGTFQKWAALVVPPGEEQSYTCHV+HEG QEP TLRW+P +   I IVGI+ GLVL+ 
Sbjct: 260  SGDGTFQKWAALVVPPGEEQSYTCHVQHEGPQEPRTLRWDPPQ-PPIPIVGIIVGLVLVL 318

Query: 989  --GAVIT--V*WKKR 1021
              GA++T  V W+K+
Sbjct: 319  VAGAMVTGVVIWRKK 333


>ref|NP_998933.1| MHC class I antigen 7 [Sus scrofa].
          Length = 401

 Score =  434 bits (1117), Expect = e-122
 Identities = 211/315 (66%), Positives = 247/315 (78%), Gaps = 5/315 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T+ WA  HS+RYF+T VSRP   +PR+  VGYVDDTQFVRFDS A NPR EPR PWVE E
Sbjct: 17   TQPWARPHSLRYFYTAVSRPSRRDPRFSVVGYVDDTQFVRFDSNAPNPREEPRTPWVELE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G E  D  T+  KD  QNF+ +L +LRGYYNQSE GSHT+Q   GC     GR L  + Q
Sbjct: 77   GPECCDRNTRIYKDTSQNFQVSLNVLRGYYNQSEAGSHTYQWLCGCYVARDGRLLRGYSQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            +AYDG DYI LNEDL SWTA  MAA++T+RKW++    E+ ++YLE  CV+ L RYL NG
Sbjct: 137  FAYDGADYIVLNEDLRSWTAVGMAAQITRRKWEEETVAEQSRAYLEVACVQSLHRYLANG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            +E LQR+DPPK +VT HPSSDNKVTLRCWALGFYPKEISLTW++EGQDQSQDVEVVETRP
Sbjct: 197  KETLQRSDPPKTHVTRHPSSDNKVTLRCWALGFYPKEISLTWQQEGQDQSQDVEVVETRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDGTF+KWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P +   + IVGI+ GLVL+ 
Sbjct: 257  SGDGTFRKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ-PPVPIVGIIVGLVLVL 315

Query: 989  --GAVIT--V*WKKR 1021
              GAV+T  V W+K+
Sbjct: 316  VTGAVVTGVVIWRKK 330


>ref|XP_003356639.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
            chain-like [Sus scrofa].
          Length = 361

 Score =  432 bits (1111), Expect = e-121
 Identities = 210/315 (66%), Positives = 248/315 (78%), Gaps = 5/315 (1%)
 Frame = +2

Query: 92   TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
            T T AG HS+ YF+T VSRP  G+ R+  VGYVDDTQFVRFDS+A N +MEPRA W++QE
Sbjct: 17   TGTQAGPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIKQE 76

Query: 272  GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
            G EYWD ETQ +K+  Q +R  L  LRGYYNQSE GSHT Q  YGC  G  G  L  + Q
Sbjct: 77   GPEYWDRETQISKETAQTYRVGLKTLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYRQ 136

Query: 452  YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
             AYDG DY+ LNEDL SWTAAD AA++T+RKW+ +   E  +SYL+G CVE LR+YLE G
Sbjct: 137  DAYDGADYLALNEDLRSWTAADTAAQITKRKWEAADEAEGERSYLQGLCVESLRKYLEMG 196

Query: 632  REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            ++ LQRA+PPK +VT HPSSD  VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRP
Sbjct: 197  KDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRP 256

Query: 812  SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL- 988
            SGDGTFQKWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P + + + IVGI+ GLVL+ 
Sbjct: 257  SGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ-TPVPIVGIIVGLVLVL 315

Query: 989  --GAVI--TV*WKKR 1021
              GAV+   V W+K+
Sbjct: 316  VAGAVVAGVVIWRKK 330


>ref|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].
          Length = 361

 Score =  421 bits (1082), Expect = e-118
 Identities = 201/299 (67%), Positives = 238/299 (79%)
 Frame = +2

Query: 92  TETWAGSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQE 271
           T T AG HS+ Y  T VSRPG GEPR++ VG VDDT  VRFDS+A+ PR EPRA W+EQE
Sbjct: 17  TGTRAGPHSLSYLFTSVSRPGRGEPRFIAVGCVDDTPLVRFDSDARKPRKEPRAWWIEQE 76

Query: 272 GQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQ 451
           G EYWDEET+ +KD  Q  R NL  LRGYYNQSE  SHT Q  +GC+ G     L  + Q
Sbjct: 77  GPEYWDEETRISKDNAQTLRGNLNTLRGYYNQSEARSHTIQSLFGCDVGPDRLLLRRYRQ 136

Query: 452 YAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENG 631
            AYDG DY+ LNEDL SWTAAD AA++T+RKW+ +   E+ +SYL+G CVE L++YLE G
Sbjct: 137 DAYDGADYLALNEDLRSWTAADTAAQITKRKWETANVAEQERSYLQGLCVEGLQKYLEMG 196

Query: 632 REMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRP 811
            + LQRA+PPK +VT HPSSD  VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRP
Sbjct: 197 EDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRP 256

Query: 812 SGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLL 988
           SGDGTFQKWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P++ + + +VGI+ GLVL+
Sbjct: 257 SGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ-TPVPMVGIIVGLVLV 314


>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
          Length = 369

 Score =  410 bits (1053), Expect = e-115
 Identities = 192/306 (62%), Positives = 239/306 (78%), Gaps = 1/306 (0%)
 Frame = +2

Query: 107  GSHSMRYFHTVVSRPGHGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYW 286
            GSHS+RY H +VSRPGHG   Y  VG++DDTQFVRF S+A NPR+EPRAPW+EQEG+EYW
Sbjct: 50   GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 109

Query: 287  DEETQRAKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHAHWQYAYDG 466
            D +T  AK+  +  R NL ++ G +N S++ SH+F    GC+ GS GR L  + Q++YDG
Sbjct: 110  DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSEGRILRGYEQFSYDG 169

Query: 467  EDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQ 646
            +DYI LNEDL SWTA    A++ +RKW+     E++++YLE  CVEWLR+YLE G+++LQ
Sbjct: 170  DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 229

Query: 647  RADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDGT 826
            RA PPK +VT HP  DNKVTLRCWALGFYPKEISLTW+R+G+DQ+QD+E+VETRPSGDGT
Sbjct: 230  RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETRPSGDGT 289

Query: 827  FQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSRLSAITIVGIVAGLVLLGAVI-T 1003
            FQKWAALVVP GEEQSYTC V+HEGLQEPLTLRWEP  LS   I+  +A  VL+  V+ T
Sbjct: 290  FQKWAALVVPSGEEQSYTCQVQHEGLQEPLTLRWEPPPLSLNLIMICIAVSVLVVTVLGT 349

Query: 1004 V*WKKR 1021
            V W+KR
Sbjct: 350  VIWRKR 355


>ref|XP_003361021.1| PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102
            alpha chain-like [Sus scrofa].
          Length = 374

 Score =  258 bits (660), Expect = 3e-69
 Identities = 133/332 (40%), Positives = 195/332 (58%), Gaps = 2/332 (0%)
 Frame = +2

Query: 17   LGLSADPQDSVMESQMXXXXXXXXXTETWA-GSHSMRYFHTVVSRPGHGEPRYLEVGYVD 193
            L L AD   S+ +  M          + W  G+HS+RY +  +S PG G P++L VGYVD
Sbjct: 9    LPLVADSPASMAKVVMAELADLKLEKKPWPRGTHSLRYHYLALSEPGPGLPQFLAVGYVD 68

Query: 194  DTQFVRFDSEAQNPRMEPRAPWVEQEGQEYWDEETQRAKDLVQNFRRNLMILRGYYNQSE 373
            D  F+R+DS  +  + EP+APW+     +YW++ET++ +   +  +  +  + GYYNQS 
Sbjct: 69   DQVFIRYDS--RRGKAEPQAPWMAHMDAQYWEKETKKQRIWAKVQQVEMWTVMGYYNQS- 125

Query: 374  TGSHTFQLTYGCEEGSHGRPLHAHWQYAYDGEDYITLNEDLSSWTAADMAARVTQRKWDK 553
            +G H+ Q  +GCE    G      WQ+ +DG+D+++L+ +  SW +A+  A  T+R W+ 
Sbjct: 126  SGMHSTQRMFGCEIQEDGHST-GFWQFGFDGQDHLSLDLETLSWVSAEPVAVRTKRWWET 184

Query: 554  SRAHERF-KSYLEGTCVEWLRRYLENGREMLQRADPPKAYVTCHPSSDNKVTLRCWALGF 730
             R +  + K+Y+EG C+  LR+YLE G +   R +PP   VT H + D   TLRCWALGF
Sbjct: 185  ERCYAEYDKAYVEGVCLTSLRKYLELGGQRFSRREPPTVRVTKHTAQDGGTTLRCWALGF 244

Query: 731  YPKEISLTWRREGQDQSQDVEVVETRPSGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQE 910
            YP++ISL+W    ++ +   E VETRPSGDGT+Q W A  VP GEE  YTCHV+H  L  
Sbjct: 245  YPQDISLSWWLGEKELTSKTEYVETRPSGDGTYQTWLATQVPAGEEIQYTCHVQHSSLNH 304

Query: 911  PLTLRWEPSRLSAITIVGIVAGLVLLGAVITV 1006
             LT+ WE    S +  + I   LVLL   + +
Sbjct: 305  TLTVTWESPSSSGLIAMIISPILVLLVVCVVI 336


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,854,936
Number of extensions: 811708
Number of successful extensions: 3933
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 3819
Number of HSP's successfully gapped: 38
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000408
         (1023 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         545   e-152
gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22   103   2e-19

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  545 bits (275), Expect = e-152
 Identities = 278/279 (99%)
 Strand = Plus / Minus

                                                                            
Query: 651      cagaccccccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctga 710
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27628608 cagaccccccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctga 27628549

                                                                            
Query: 711      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggc 770
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27628548 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggc 27628489

                                                                            
Query: 771      aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 830
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27628488 aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 27628429

                                                                            
Query: 831      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtga 890
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27628428 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtga 27628369

                                                       
Query: 891      agcacgagggcctgcaggagcccctcaccctgagatggg 929
                |||||||||||||||||||||| ||||||||||||||||
Sbjct: 27628368 agcacgagggcctgcaggagccactcaccctgagatggg 27628330



 Score =  533 bits (269), Expect = e-149
 Identities = 275/277 (99%)
 Strand = Plus / Minus

                                                                            
Query: 377      gggtctcataccttccagttgacctatggttgcgaggaggggtcgcacggacgccccctt 436
                |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 27209931 gggtctcataccttccagttgacctatggttgcgaggaggagtcgcacggaggccccctt 27209872

                                                                            
Query: 437      cacgcgcactggcagtacgcctacgacggcgaggattacatcactttgaacgaggacctg 496
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27209871 cacgcgcactggcagtacgcctacgacggcgaggattacatcactttgaacgaggacctg 27209812

                                                                            
Query: 497      agttcctggactgcagcggacatggcggctcgggtcacacagcgcaagtgggacaagtcc 556
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27209811 agttcctggactgcagcggacatggcggctcgggtcacacagcgcaagtgggacaagtcc 27209752

                                                                            
Query: 557      cgtgctcatgagcgcttcaagagctacctggagggcacgtgtgtggagtggctcagaaga 616
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27209751 cgtgctcatgagcgcttcaagagctacctggagggcacgtgtgtggagtggctcagaaga 27209692

                                                     
Query: 617      tacctggagaacgggagggagatgctgcaacgtgcag 653
                |||||||||||||||||||||||||||||||||||||
Sbjct: 27209691 tacctggagaacgggagggagatgctgcaacgtgcag 27209655



 Score =  533 bits (269), Expect = e-149
 Identities = 275/277 (99%)
 Strand = Plus / Minus

                                                                            
Query: 377      gggtctcataccttccagttgacctatggttgcgaggaggggtcgcacggacgccccctt 436
                |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 27629457 gggtctcataccttccagttgacctatggttgcgaggaggagtcgcacggaggccccctt 27629398

                                                                            
Query: 437      cacgcgcactggcagtacgcctacgacggcgaggattacatcactttgaacgaggacctg 496
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27629397 cacgcgcactggcagtacgcctacgacggcgaggattacatcactttgaacgaggacctg 27629338

                                                                            
Query: 497      agttcctggactgcagcggacatggcggctcgggtcacacagcgcaagtgggacaagtcc 556
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27629337 agttcctggactgcagcggacatggcggctcgggtcacacagcgcaagtgggacaagtcc 27629278

                                                                            
Query: 557      cgtgctcatgagcgcttcaagagctacctggagggcacgtgtgtggagtggctcagaaga 616
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27629277 cgtgctcatgagcgcttcaagagctacctggagggcacgtgtgtggagtggctcagaaga 27629218

                                                     
Query: 617      tacctggagaacgggagggagatgctgcaacgtgcag 653
                |||||||||||||||||||||||||||||||||||||
Sbjct: 27629217 tacctggagaacgggagggagatgctgcaacgtgcag 27629181



 Score =  531 bits (268), Expect = e-148
 Identities = 271/272 (99%)
 Strand = Plus / Minus

                                                                            
Query: 107      ggctctcactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccc 166
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27210472 ggctctcactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccc 27210413

                                                                            
Query: 167      cggtaccttgaggtcggctacgtggacgacacgcagttcgtgcggttcgacagcgaagct 226
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 27210412 cggtaccttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagct 27210353

                                                                            
Query: 227      cagaatccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgg 286
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27210352 cagaatccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgg 27210293

                                                                            
Query: 287      gatgaggagacacagcgcgccaaggatcttgtacagaattttcgaaggaacctgatgatc 346
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27210292 gatgaggagacacagcgcgccaaggatcttgtacagaattttcgaaggaacctgatgatc 27210233

                                                
Query: 347      cttcggggctactacaaccagagtgagaccgg 378
                ||||||||||||||||||||||||||||||||
Sbjct: 27210232 cttcggggctactacaaccagagtgagaccgg 27210201



 Score =  531 bits (268), Expect = e-148
 Identities = 271/272 (99%)
 Strand = Plus / Minus

                                                                            
Query: 107      ggctctcactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccc 166
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27629998 ggctctcactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccc 27629939

                                                                            
Query: 167      cggtaccttgaggtcggctacgtggacgacacgcagttcgtgcggttcgacagcgaagct 226
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 27629938 cggtaccttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagct 27629879

                                                                            
Query: 227      cagaatccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgg 286
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27629878 cagaatccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgg 27629819

                                                                            
Query: 287      gatgaggagacacagcgcgccaaggatcttgtacagaattttcgaaggaacctgatgatc 346
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27629818 gatgaggagacacagcgcgccaaggatcttgtacagaattttcgaaggaacctgatgatc 27629759

                                                
Query: 347      cttcggggctactacaaccagagtgagaccgg 378
                ||||||||||||||||||||||||||||||||
Sbjct: 27629758 cttcggggctactacaaccagagtgagaccgg 27629727



 Score =  482 bits (243), Expect = e-133
 Identities = 264/271 (97%)
 Strand = Plus / Plus

                                                                            
Query: 659      ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 718
                |||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 27616070 ccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttgaggtgctgg 27616129

                                                                            
Query: 719      gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 778
                |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 27616130 gccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggaccag 27616189

                                                                            
Query: 779      agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 838
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616190 agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 27616249

                                                                            
Query: 839      gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 898
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 27616250 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 27616309

                                               
Query: 899      ggcctgcaggagcccctcaccctgagatggg 929
                |||||||||||||||||||||||||||||||
Sbjct: 27616310 ggcctgcaggagcccctcaccctgagatggg 27616340



 Score =  410 bits (207), Expect = e-112
 Identities = 261/279 (93%)
 Strand = Plus / Minus

                                                                            
Query: 651      cagaccccccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctga 710
                ||||||| |||||| || |||||||| |||||||||||||||||      |||||| |||
Sbjct: 24706186 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24706127

                                                                            
Query: 711      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggc 770
                |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 24706126 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24706067

                                                                            
Query: 771      aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 830
                ||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 24706066 aggaccagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttcc 24706007

                                                                            
Query: 831      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtga 890
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 24706006 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24705947

                                                       
Query: 891      agcacgagggcctgcaggagcccctcaccctgagatggg 929
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24705946 agcacgagggcctgcaggagcccctcaccctgagatggg 24705908



 Score =  402 bits (203), Expect = e-109
 Identities = 255/271 (94%), Gaps = 1/271 (0%)
 Strand = Plus / Minus

                                                                            
Query: 659      ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 718
                |||||| || |||||||| |||||||||||||||||   |  |||||| |||||||||||
Sbjct: 24657265 ccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttgaggtgctgg 24657206

                                                                            
Query: 719      gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 778
                |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 24657205 gccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggcaggaccag 24657146

                                                                            
Query: 779      agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 838
                ||||||||| ||||| | ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 24657145 agccaggacatggagctggtggagaccaggccctcaggg-atgggaccttccagaagtgg 24657087

                                                                            
Query: 839      gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 898
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24657086 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 24657027

                                               
Query: 899      ggcctgcaggagcccctcaccctgagatggg 929
                |||||||||||||||||||||||||||||||
Sbjct: 24657026 ggcctgcaggagcccctcaccctgagatggg 24656996



 Score =  402 bits (203), Expect = e-109
 Identities = 254/271 (93%)
 Strand = Plus / Minus

                                                                            
Query: 659      ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 718
                |||||| || |||||||| |||||||||||||||||      |||||| |||||||||||
Sbjct: 24685325 ccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgctgg 24685266

                                                                            
Query: 719      gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 778
                |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 24685265 gccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaggaccag 24685206

                                                                            
Query: 779      agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 838
                ||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 24685205 agccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaagtgg 24685146

                                                                            
Query: 839      gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 898
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24685145 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 24685086

                                               
Query: 899      ggcctgcaggagcccctcaccctgagatggg 929
                |||||||||||||||||||||||||||||||
Sbjct: 24685085 ggcctgcaggagcccctcaccctgagatggg 24685055



 Score =  394 bits (199), Expect = e-107
 Identities = 253/271 (93%)
 Strand = Plus / Minus

                                                                            
Query: 659      ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 718
                |||||| || |||||||| |||||||||||||||||      ||||||||||||||||||
Sbjct: 24643489 ccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctgaggtgctgg 24643430

                                                                            
Query: 719      gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 778
                |||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct: 24643429 gccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggaccag 24643370

                                                                            
Query: 779      agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 838
                ||||| ||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 24643369 agccaagacatggagctggtggagaccaggccctcaggggatgggaccttccagaagtgg 24643310

                                                                            
Query: 839      gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 898
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24643309 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 24643250

                                               
Query: 899      ggcctgcaggagcccctcaccctgagatggg 929
                |||||||||||||||||||||||||||||||
Sbjct: 24643249 ggcctgcaggagcccctcaccctgagatggg 24643219



 Score =  394 bits (199), Expect = e-107
 Identities = 259/279 (92%)
 Strand = Plus / Minus

                                                                            
Query: 651      cagaccccccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctga 710
                ||||||| |||||| || |||||||| |||||||||||||||||      |||||| |||
Sbjct: 26675878 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 26675819

                                                                            
Query: 711      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggc 770
                |||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |
Sbjct: 26675818 ggtgctgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggcc 26675759

                                                                            
Query: 771      aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 830
                ||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 26675758 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 26675699

                                                                            
Query: 831      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtga 890
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 26675698 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 26675639

                                                       
Query: 891      agcacgagggcctgcaggagcccctcaccctgagatggg 929
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 26675638 agcacgagggcctgcaggagcccctcaccctgagatggg 26675600



 Score =  391 bits (197), Expect = e-106
 Identities = 221/229 (96%)
 Strand = Plus / Minus

                                                                            
Query: 701      gtcaccctgaggtgctgggccctgggcttctaccctaaggagatctccctgacctggcgg 760
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 24722351 gtcaccctgaggtgctgggccctgggcttctaccctaaggagatctccctgacctggcag 24722292

                                                                            
Query: 761      cgggaggggcaggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggat 820
                |||||||| || ||||||||||||||| ||||| | ||||| ||||||||||||||||||
Sbjct: 24722291 cgggagggccaagaccagagccaggacatggagctggtggagaccaggccctcaggggat 24722232

                                                                            
Query: 821      gggaccttccagaagtgggcggccctggtggtgcctcctggagaggagcagagctacacc 880
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722231 gggaccttccagaagtgggcggccctggtggtgcctcctggagaggagcagagctacacc 24722172

                                                                 
Query: 881      tgccatgtgaagcacgagggcctgcaggagcccctcaccctgagatggg 929
                ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 24722171 tgccatgtgcagcacgagggcctgcaggagcccctcaccctgagatggg 24722123



 Score =  387 bits (195), Expect = e-105
 Identities = 252/271 (92%)
 Strand = Plus / Minus

                                                                            
Query: 659      ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 718
                |||||| || |||||||| |||||||||||||||||      |||||| |||||||||||
Sbjct: 24749840 ccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttgaggtgctgg 24749781

                                                                            
Query: 719      gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 778
                || ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 24749780 gctctgggcttccaccctaaggagatctccctgacctggcagcgggagggccaggaccag 24749721

                                                                            
Query: 779      agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 838
                ||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 24749720 agccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaagtgg 24749661

                                                                            
Query: 839      gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 898
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24749660 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 24749601

                                               
Query: 899      ggcctgcaggagcccctcaccctgagatggg 929
                |||||||||||||||||||||||||||||||
Sbjct: 24749600 ggcctgcaggagcccctcaccctgagatggg 24749570



 Score =  375 bits (189), Expect = e-101
 Identities = 243/261 (93%)
 Strand = Plus / Plus

                                                                            
Query: 669      atgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgggccctgggct 728
                |||||||| ||||||||  || ||||||||||||||| || || ||||||||||||||||
Sbjct: 27604584 atgtgacccgccaccccttctatgacaataaagtcactctaagatgctgggccctgggct 27604643

                                                                            
Query: 729      tctaccctaaggagatctccctgacctggcggcgggaggggcaggaccagagccaggacg 788
                |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||| 
Sbjct: 27604644 tctaccctaaggagatctccctgacctggcagcaggaggggcaggaccagacccaggaca 27604703

                                                                            
Query: 789      tggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgggcggccctgg 848
                ||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 27604704 tggagctcgtggagaccaggccttcaggggatgggaccttccagaagtgggcggccctgg 27604763

                                                                            
Query: 849      tggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgagggcctgcagg 908
                |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 27604764 tggtgccttctggagaggagcagagctacacctgccaggtgcagcacgagggcctgcagg 27604823

                                     
Query: 909      agcccctcaccctgagatggg 929
                |||||||||||||||||||||
Sbjct: 27604824 agcccctcaccctgagatggg 27604844



 Score =  206 bits (104), Expect = 2e-50
 Identities = 107/108 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1        tccgaattctcggattctcggactctctgcagacccacaggattcggtcatggagtctca 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27210871 tccgaattctcggattctcggactctctgcagacccacaggattcggtcatggagtctca 27210812

                                                                
Query: 61       gatgcttcttctggtgctcttgggggccctgaccgagacctgggcggg 108
                |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 27210811 gatgctccttctggtgctcttgggggccctgaccgagacctgggcggg 27210764



 Score =  206 bits (104), Expect = 2e-50
 Identities = 107/108 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1        tccgaattctcggattctcggactctctgcagacccacaggattcggtcatggagtctca 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27630397 tccgaattctcggattctcggactctctgcagacccacaggattcggtcatggagtctca 27630338

                                                                
Query: 61       gatgcttcttctggtgctcttgggggccctgaccgagacctgggcggg 108
                |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 27630337 gatgctccttctggtgctcttgggggccctgaccgagacctgggcggg 27630290



 Score =  200 bits (101), Expect = 1e-48
 Identities = 165/185 (89%), Gaps = 1/185 (0%)
 Strand = Plus / Minus

                                                                            
Query: 113      cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 172
                |||||| ||||||||||| |||| | |||||||||||||| || |||| ||||||| | |
Sbjct: 24644853 cactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccccgtt-c 24644795

                                                                            
Query: 173      cttgaggtcggctacgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 232
                 |    |||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 24644794 atctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccgaat 24644735

                                                                            
Query: 233      ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 292
                ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 24644734 ccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattgggatgag 24644675

                     
Query: 293      gagac 297
                |||||
Sbjct: 24644674 gagac 24644670



 Score =  184 bits (93), Expect = 6e-44
 Identities = 162/185 (87%)
 Strand = Plus / Minus

                                                                            
Query: 113      cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 172
                |||||| |||| ||||||  ||| | |||||||||||||| || ||||||  |||| | |
Sbjct: 24751221 cactccctgagctatttcttcaccgccgtgtcccggcccgaccgcggggactcccgcttc 24751162

                                                                            
Query: 173      cttgaggtcggctacgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 232
                 | |  |||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 24751161 atcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccgaat 24751102

                                                                            
Query: 233      ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 292
                ||| ||||||||||||||||||||||| |  |||||||||||||||||||||||||||||
Sbjct: 24751101 ccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggagtattgggatgag 24751042

                     
Query: 293      gagac 297
                |||||
Sbjct: 24751041 gagac 24751037



 Score =  172 bits (87), Expect = 2e-40
 Identities = 135/151 (89%)
 Strand = Plus / Minus

                                                                            
Query: 139      cgtgtcccggcccggccacggggagccccggtaccttgaggtcggctacgtggacgacac 198
                |||||||||||||| || |||||||||||| | | | |  |||||||||||| |||||||
Sbjct: 24707517 cgtgtcccggcccgaccgcggggagccccgtttcatcgccgtcggctacgtgaacgacac 24707458

                                                                            
Query: 199      gcagttcgtgcggttcgacagcgaagctcagaatccgaggatggagccgcgggcgccgtg 258
                |||||||||||||||||||||||| || | ||||||| ||||||||||||||||||||||
Sbjct: 24707457 gcagttcgtgcggttcgacagcgacgccccgaatccgcggatggagccgcgggcgccgtg 24707398

                                               
Query: 259      ggtggagcaggaggggcaggagtattgggat 289
                | ||||||||||||||||||| | |||||||
Sbjct: 24707397 gatggagcaggaggggcaggactgttgggat 24707367



 Score =  168 bits (85), Expect = 4e-39
 Identities = 154/177 (87%)
 Strand = Plus / Minus

                                                                            
Query: 113      cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 172
                |||||| |||| ||||||  ||| | |||||||||||||| || |||||||||||| | |
Sbjct: 24627122 cactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccccgcttc 24627063

                                                                            
Query: 173      cttgaggtcggctacgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 232
                 | |  |||||||||||||||||||||||||||||||||||||||||||| || |  |||
Sbjct: 24627062 atcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcccccaat 24627003

                                                                         
Query: 233      ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggat 289
                ||| ||||||||||||||||||||||| |  |||||||||||||||| |||||||||
Sbjct: 24627002 ccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggactattgggat 24626946



 Score =  155 bits (78), Expect = 6e-35
 Identities = 78/78 (100%)
 Strand = Plus / Minus

                                                                            
Query: 929      gaaccgtctcggctgtccgccatcaccatcgtaggaatcgttgctggtctggttctcctt 988
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27628198 gaaccgtctcggctgtccgccatcaccatcgtaggaatcgttgctggtctggttctcctt 27628139

                                  
Query: 989      ggagctgtgatcactgtg 1006
                ||||||||||||||||||
Sbjct: 27628138 ggagctgtgatcactgtg 27628121



 Score =  145 bits (73), Expect = 5e-32
 Identities = 157/185 (84%)
 Strand = Plus / Minus

                                                                            
Query: 113      cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 172
                |||||| |||| |||||| |||| | |||||||||||||| || ||||||  | || | |
Sbjct: 24686706 cactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactctcgcttc 24686647

                                                                            
Query: 173      cttgaggtcggctacgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 232
                 | |  |||||||||||||||||||||||||||||||||||||||| | | || | ||||
Sbjct: 24686646 atcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgccccgaat 24686587

                                                                            
Query: 233      ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 292
                ||| |||||||||| |||| ||||||| |  |||||||||||||||| ||||||||||||
Sbjct: 24686586 ccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgggatgag 24686527

                     
Query: 293      gagac 297
                |||||
Sbjct: 24686526 gagac 24686522



 Score =  113 bits (57), Expect = 2e-22
 Identities = 147/177 (83%)
 Strand = Plus / Plus

                                                                            
Query: 113      cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 172
                |||||| ||||| || || |||| | ||||||||||||||||| | ||||| |||| | |
Sbjct: 24620298 cactccctgagggatgtctacaccgccgtgtcccggcccggccgcagggagacccgctcc 24620357

                                                                            
Query: 173      cttgaggtcggctacgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 232
                 |||  |||||||||||||||||||||||  || || ||||||||||||| || | ||||
Sbjct: 24620358 attgccgtcggctacgtggacgacacgcaactcatgaggttcgacagcgacgccccgaat 24620417

                                                                         
Query: 233      ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggat 289
                |||| | |||||| |||| || ||||| |||||||| ||||||  ||||||||||||
Sbjct: 24620418 ccgaaggtggagctgcggccgtcgtggatggagcagcaggggccagagtattgggat 24620474



 Score =  109 bits (55), Expect = 3e-21
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                            
Query: 179      gtcggctacgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaatccgagg 238
                |||||||| || |||||||||||||||||||||||||||||| | || | ||||||||||
Sbjct: 27614521 gtcggctatgtagacgacacgcagttcgtgcggttcgacagcaatgccccgaatccgagg 27614580

                                                               
Query: 239      atggagccgcgggcgccgtgggtggagcaggaggggcaggagtattg 285
                  |||||||||| | ||||||||||||| |||||| | |||||||||
Sbjct: 27614581 gaggagccgcggacaccgtgggtggagctggagggcccggagtattg 27614627



 Score =  107 bits (54), Expect = 1e-20
 Identities = 132/158 (83%)
 Strand = Plus / Minus

                                                                            
Query: 140      gtgtcccggcccggccacggggagccccggtaccttgaggtcggctacgtggacgacacg 199
                ||||||||||| |||| |||||||||||| | | | |  ||||||| |||||||||||||
Sbjct: 24723748 gtgtcccggcctggccgcggggagccccgcttcatcgccgtcggctgcgtggacgacacg 24723689

                                                                            
Query: 200      cagttcgtgcggttcgacagcgaagctcagaatccgaggatggagccgcgggcgccgtgg 259
                | ||| ||||||||||||||||| || | ||| | ||||| |||||||||||||  |  |
Sbjct: 24723688 ccgttggtgcggttcgacagcgacgccccgaagctgaggaaggagccgcgggcgtggaag 24723629

                                                      
Query: 260      gtggagcaggaggggcaggagtattgggatgaggagac 297
                 |  |||||||||||| |||||||||||| ||||||||
Sbjct: 24723628 ataaagcaggaggggccggagtattgggacgaggagac 24723591



 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 88/101 (87%)
 Strand = Plus / Plus

                                                                            
Query: 189      tggacgacacgcagttcgtgcggttcgacagcgaagctcagaatccgaggatggagccgc 248
                ||||||||||||||||||| ||||||  |||||| ||   |||||| ||| ||||||| |
Sbjct: 27603284 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 27603343

                                                         
Query: 249      gggcgccgtgggtggagcaggaggggcaggagtattgggat 289
                ||||||||||| ||||||||||||||| ||| |||||||||
Sbjct: 27603344 gggcgccgtggatggagcaggaggggcgggaatattgggat 27603384



 Score = 91.7 bits (46), Expect = 7e-16
 Identities = 97/114 (85%)
 Strand = Plus / Minus

                                                                            
Query: 140      gtgtcccggcccggccacggggagccccggtaccttgaggtcggctacgtggacgacacg 199
                ||||||||||| |||| |||||||||||| | | | |  ||||||| |||||||||||||
Sbjct: 24658618 gtgtcccggcctggccgcggggagccccgcttcatcgccgtcggctgcgtggacgacacg 24658559

                                                                      
Query: 200      cagttcgtgcggttcgacagcgaagctcagaatccgaggatggagccgcgggcg 253
                | ||| ||||||||||||||||| || | ||| | ||||| |||||||||||||
Sbjct: 24658558 ccgttggtgcggttcgacagcgacgccccgaagctgaggaaggagccgcgggcg 24658505



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                            
Query: 453      acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 512
                |||||||||||||||  ||||||||| |  |||||||||||||| | |||||||| || |
Sbjct: 24686141 acgcctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcgg 24686082

                                                     
Query: 513      cggacatggcggctcgggtcacacagcgcaagtggga 549
                ||||||||||||||| | || |  |||||||||||||
Sbjct: 24686081 cggacatggcggctcagatctccaagcgcaagtggga 24686045



 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                            
Query: 453      acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 512
                |||||||||||||||  |||||| || |  |||||||||||||| | |||||||| || |
Sbjct: 24750655 acgcctacgacggcgccgattacctcgccctgaacgaggacctgcgctcctggaccgcgg 24750596

                               
Query: 513      cggacatggcggctc 527
                |||||||||||||||
Sbjct: 24750595 cggacatggcggctc 24750581



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                            
Query: 457      ctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcagcgga 516
                |||||||||||  ||||||||| |  |||||||||||||| | |||||||| || |||||
Sbjct: 24644285 ctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcggcgga 24644226

                                                 
Query: 517      catggcggctcgggtcacacagcgcaagtggga 549
                || |||||||| | ||||  |||||||| ||||
Sbjct: 24644225 cacggcggctcagatcaccaagcgcaagaggga 24644193



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 48/51 (94%), Gaps = 2/51 (3%)
 Strand = Plus / Minus

                                                                   
Query: 577      gagctacctggagggcacgtgtgtggagtggc-tcagaagatacctggaga 626
                |||||||||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct: 24657961 gagctacctgcagggcacgtgtgtggagtggcttcagaa-atacctggaga 24657912



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 48/51 (94%), Gaps = 2/51 (3%)
 Strand = Plus / Minus

                                                                   
Query: 577      gagctacctggagggcacgtgtgtggagtggctc-agaagatacctggaga 626
                |||||||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct: 24723090 gagctacctgcagggcacgtgtgtggagtggctccagaa-atacctggaga 24723041



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 577      gagctacctggagggcacgtgtgtggagtggctcagaagatacctggaga 626
                |||||||||| |||||||||||||||||| |||| | | |||||||||||
Sbjct: 24750531 gagctacctgcagggcacgtgtgtggagtcgctccgcaaatacctggaga 24750482



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                            
Query: 449      cagtacgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggact 508
                |||| |||||| ||||||| ||||||||||    |||||||||||||| | |||||||| 
Sbjct: 27614965 cagttcgcctatgacggcgcggattacatcgtcctgaacgaggacctgcgctcctggacc 27615024

                                                         
Query: 509      gcagcggacatggcggctcgggtcacacagcgcaagtggga 549
                || | || ||||||||||| | |||| | |||||| |||||
Sbjct: 27615025 gcggtgggcatggcggctcagatcactcggcgcaaatggga 27615065


>gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22
          Length = 107

 Score =  103 bits (52), Expect = 2e-19
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                       
Query: 113 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 172
           |||||| ||||||||||| |||| | |||||||||||||| || |||||||||||| | |
Sbjct: 8   cactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccccgcttc 67

                                                   
Query: 173 cttgaggtcggctacgtggacgacacgcagttcgtgcggt 212
            | |  ||||||||||||||||||||||||||||||||||
Sbjct: 68  atcgccgtcggctacgtggacgacacgcagttcgtgcggt 107


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,831,784
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 35
Length of query: 1023
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1002
Effective length of database: 2,808,413,156
Effective search space: 2814029982312
Effective search space used: 2814029982312
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)