Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000449
(1313 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029206.1| glyceraldehyde-3-phosphate dehydrogenase [Bo... 662 0.0
Alignment gi|XP_001252512.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 662 0.0
Alignment gi|XP_002704508.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 662 0.0
Alignment gi|NP_001035642.1| glyceraldehyde-3-phosphate dehydrogenase, te... 471 e-133
Alignment gi|XP_002684960.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 250 2e-66
Alignment gi|XP_873258.1| PREDICTED: glyceraldehyde-3-phosphate dehydroge... 250 2e-66
>ref|NP_001029206.1| glyceraldehyde-3-phosphate dehydrogenase [Bos taurus].
Length = 333
Score = 662 bits (1709), Expect = 0.0
Identities = 328/333 (98%), Positives = 332/333 (99%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKA 60
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGKLVINGKAITIFQERDPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
APSADAPMFVMGVNHEKY+N+LKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 805 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
VDLTCRLEKPAKYD+IKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300
Query: 985 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 301 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>ref|XP_001252512.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like isoform 2
[Bos taurus].
Length = 333
Score = 662 bits (1709), Expect = 0.0
Identities = 328/333 (98%), Positives = 332/333 (99%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKA 60
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGKLVINGKAITIFQERDPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
APSADAPMFVMGVNHEKY+N+LKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 805 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
VDLTCRLEKPAKYD+IKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300
Query: 985 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 301 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>ref|XP_002704508.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Bos
taurus].
Length = 333
Score = 662 bits (1709), Expect = 0.0
Identities = 328/333 (98%), Positives = 332/333 (99%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKA 60
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGKLVINGKAITIFQERDPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
APSADAPMFVMGVNHEKY+N+LKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 805 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
VDLTCRLEKPAKYD+IKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300
Query: 985 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 301 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>ref|NP_001035642.1| glyceraldehyde-3-phosphate dehydrogenase, testis-specific [Bos
taurus].
Length = 395
Score = 471 bits (1213), Expect = e-133
Identities = 230/331 (69%), Positives = 277/331 (83%), Gaps = 1/331 (0%)
Frame = +1
Query: 94 VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENG 273
VG+NGFGRIGRLV RA G V +VA+NDPFIDL YMVYMF+YDSTHG++ G V+ + G
Sbjct: 65 VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDLEYMVYMFKYDSTHGRYKGNVEHKKG 123
Query: 274 KLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS 453
+LV++ I++FQ + P I W G+ +VVE+TGV+ ++E+ AH++ GA+RV+I APS
Sbjct: 124 QLVVDNNEISVFQCKQPKEIPWKSVGSPFVVEATGVYLSLEETKAHIEAGAQRVVICAPS 183
Query: 454 ADAPMFVMGVNHEKYD-NSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITAT 630
DAPMFVMGVN ++Y+ +S+KIVSNASCTTNCLAPLAKVIH+ FGI+EGLMTTVH+ TAT
Sbjct: 184 PDAPMFVMGVNEKEYNPSSMKIVSNASCTTNCLAPLAKVIHERFGILEGLMTTVHSYTAT 243
Query: 631 QKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVD 810
QKTVDGPS K WRDGRGA QNIIPASTGAAKAVGKVIP+L GKLTGMAFRVPTP+VSVVD
Sbjct: 244 QKTVDGPSKKAWRDGRGAHQNIIPASTGAAKAVGKVIPDLKGKLTGMAFRVPTPDVSVVD 303
Query: 811 LTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALN 990
LTCRL +P Y IK +K A++GP+ GIL YTED+VVS DF SDTHSS FDA AGIALN
Sbjct: 304 LTCRLAQPTPYSAIKDAIKAAAKGPMAGILAYTEDEVVSTDFLSDTHSSIFDAKAGIALN 363
Query: 991 DHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
D+FVKLISWYDNE+GYSNRVVDL+ +M S++
Sbjct: 364 DNFVKLISWYDNEYGYSNRVVDLVRYMFSRD 394
>ref|XP_002684960.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Bos
taurus].
Length = 183
Score = 250 bits (638), Expect = 2e-66
Identities = 122/125 (97%), Positives = 124/125 (99%)
Frame = +1
Query: 709 TGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPL 888
TGAAKAVGKVIPELNGKLTGMAFR+PTPNVSVVDLTC LEKPAKYD+IKKVVKQASEGPL
Sbjct: 59 TGAAKAVGKVIPELNGKLTGMAFRLPTPNVSVVDLTCHLEKPAKYDEIKKVVKQASEGPL 118
Query: 889 KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH 1068
KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH
Sbjct: 119 KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH 178
Query: 1069 MASKE 1083
MASKE
Sbjct: 179 MASKE 183
>ref|XP_873258.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Bos
taurus].
Length = 183
Score = 250 bits (638), Expect = 2e-66
Identities = 122/125 (97%), Positives = 124/125 (99%)
Frame = +1
Query: 709 TGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPL 888
TGAAKAVGKVIPELNGKLTGMAFR+PTPNVSVVDLTC LEKPAKYD+IKKVVKQASEGPL
Sbjct: 59 TGAAKAVGKVIPELNGKLTGMAFRLPTPNVSVVDLTCHLEKPAKYDEIKKVVKQASEGPL 118
Query: 889 KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH 1068
KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH
Sbjct: 119 KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH 178
Query: 1069 MASKE 1083
MASKE
Sbjct: 179 MASKE 183
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,885,249
Number of extensions: 1419187
Number of successful extensions: 4610
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4597
Number of HSP's successfully gapped: 6
Length of query: 437
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 332
Effective length of database: 14,207,134
Effective search space: 4716768488
Effective search space used: 4716768488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000449
(1313 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003142.1| glyceraldehyde-3-phosphate dehydrogenase [Ca... 658 0.0
Alignment gi|XP_853318.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 628 e-180
Alignment gi|XP_534639.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 625 e-179
Alignment gi|XP_849606.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 605 e-173
Alignment gi|XP_549000.2| PREDICTED: similar to Glyceraldehyde-3-phosphat... 567 e-162
Alignment gi|XP_852804.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 560 e-159
Alignment gi|XP_852254.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 556 e-158
Alignment gi|XP_854937.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 548 e-156
Alignment gi|XP_850054.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 540 e-153
Alignment gi|XP_853314.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 536 e-152
>ref|NP_001003142.1| glyceraldehyde-3-phosphate dehydrogenase [Canis lupus familiaris].
Length = 333
Score = 658 bits (1698), Expect = 0.0
Identities = 326/333 (97%), Positives = 331/333 (99%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL+YMVYMFQYDSTHGKFHGTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA 60
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGKLVINGK+I+IFQERDPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
ATQKTVDGPSGK+WRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKMWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 805 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
VDLTCRLEK AKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300
Query: 985 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
LNDHFVKLISWYDNEFGYSNRVVDLMV+MASKE
Sbjct: 301 LNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333
>ref|XP_853318.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
familiaris].
Length = 333
Score = 628 bits (1619), Expect = e-180
Identities = 314/333 (94%), Positives = 317/333 (95%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
MVKVGVN FG IG LVTRAAFNSGKVDIVAINDPFIDL+YMVYMFQYDSTH KFHGTVKA
Sbjct: 1 MVKVGVNRFGHIGHLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHSKFHGTVKA 60
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGKLVINGK+I+IFQERDP NIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKSISIFQERDPVNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHF IVEGLMTTVHAI
Sbjct: 121 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFSIVEGLMTTVHAIP 180
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
ATQKTVDGPSGKLW DGRGAAQNIIPASTGAAKAVG VIPELNGKLTGMAFR PTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWCDGRGAAQNIIPASTGAAKAVGNVIPELNGKLTGMAFRDPTPNVSV 240
Query: 805 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
VDLTCRLEK AKYDD KKVVKQASE PLKGILGYTEDQVVSCDFNSDTHSSTFD GAGIA
Sbjct: 241 VDLTCRLEKAAKYDDNKKVVKQASEDPLKGILGYTEDQVVSCDFNSDTHSSTFDVGAGIA 300
Query: 985 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
LNDHFVKLISWYDNEF YSNRVVDLMVHMASKE
Sbjct: 301 LNDHFVKLISWYDNEFCYSNRVVDLMVHMASKE 333
>ref|XP_534639.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
familiaris].
Length = 334
Score = 625 bits (1612), Expect = e-179
Identities = 309/333 (92%), Positives = 319/333 (95%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
MVKV VNGFG IGRLVTR AFNSGKVDIVAINDPFIDL+YMVYMFQYDSTHGKFHGTVKA
Sbjct: 2 MVKVRVNGFGCIGRLVTRTAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA 61
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGKL+INGK+I+IFQERDPANIKWGDAGA YVVESTGVFTTMEK GAHLKGGAKRVIIS
Sbjct: 62 ENGKLIINGKSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKVGAHLKGGAKRVIIS 121
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPL+K+IHDHFGIVEGL+TTVHAIT
Sbjct: 122 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLSKIIHDHFGIVEGLITTVHAIT 181
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
ATQKTVDGPSGKLW DGR AAQNIIPASTGAAKA+GKVIPELN KLTGM F VPTPNVSV
Sbjct: 182 ATQKTVDGPSGKLWHDGRVAAQNIIPASTGAAKAMGKVIPELNRKLTGMVFHVPTPNVSV 241
Query: 805 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
VDLTC LEK AKYDDIKKVVKQASEGPLKGILGYTED VVSCDFNSDTHSSTFDAGAGIA
Sbjct: 242 VDLTCCLEKAAKYDDIKKVVKQASEGPLKGILGYTEDPVVSCDFNSDTHSSTFDAGAGIA 301
Query: 985 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
LND+FVK+ISWYDNEFGYSNRVVDLMVHM SKE
Sbjct: 302 LNDNFVKIISWYDNEFGYSNRVVDLMVHMTSKE 334
>ref|XP_849606.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
familiaris].
Length = 333
Score = 605 bits (1560), Expect = e-173
Identities = 302/333 (90%), Positives = 312/333 (93%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
MVKVGVNGFG IG LVTRAAFNSG+VDIV+INDPFID +YMVYMFQYDSTHGKFH TVKA
Sbjct: 1 MVKVGVNGFGHIGCLVTRAAFNSGRVDIVSINDPFIDFNYMVYMFQYDSTHGKFHHTVKA 60
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGKLVINGKAI+IFQERDPANIKWGDAGA YVVESTGVFTTMEK GAHLKG AKRVI+S
Sbjct: 61 ENGKLVINGKAISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKTGAHLKGRAKRVILS 120
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
APS+ APMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDH GIVEGLMTTVHAIT
Sbjct: 121 APSSGAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHLGIVEGLMTTVHAIT 180
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
ATQKT+DGPSGKLW DGRG AQNII ASTGA KA+GKVIPELN KLTGMAF VP PNVSV
Sbjct: 181 ATQKTMDGPSGKLWHDGRGTAQNIISASTGATKAMGKVIPELNRKLTGMAFHVPIPNVSV 240
Query: 805 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
VDLTCRLEK AKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDT+SSTF+A AGIA
Sbjct: 241 VDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTYSSTFNAEAGIA 300
Query: 985 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
LNDHFVKLISW DNEF YSN VVDLMVHMASKE
Sbjct: 301 LNDHFVKLISWSDNEFSYSNWVVDLMVHMASKE 333
>ref|XP_549000.2| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase
(GAPDH) [Canis familiaris].
Length = 344
Score = 567 bits (1461), Expect = e-162
Identities = 293/347 (84%), Positives = 304/347 (87%), Gaps = 4/347 (1%)
Frame = +1
Query: 55 VHCQPRP*DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDST 234
V CQP P DTMVKVGVNGFGRIG LVTRAA NSGK+DIVAIND FIDL+YMVYMFQYDST
Sbjct: 14 VQCQPHPGDTMVKVGVNGFGRIGHLVTRAALNSGKMDIVAINDTFIDLNYMVYMFQYDST 73
Query: 235 HGKFHGTVKAENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHL 414
HGKFHGTVKAEN KLVINGK+I+IFQER+P NIKWGDAGA YVVES GVFTTMEKAGAHL
Sbjct: 74 HGKFHGTVKAENRKLVINGKSISIFQERNPYNIKWGDAGAEYVVESAGVFTTMEKAGAHL 133
Query: 415 KGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVE 594
KGGAKRVIISA SA+APMFVMG+NHEKYDNSLKIVSNASCTTN LAPLAKVIH HFGIVE
Sbjct: 134 KGGAKRVIISASSAEAPMFVMGMNHEKYDNSLKIVSNASCTTNWLAPLAKVIHGHFGIVE 193
Query: 595 GLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMA 774
GLMTTVH ITATQKTVDGPSGKLW D RGAAQNIIPASTGA KAVGKVIPELNGKLTGMA
Sbjct: 194 GLMTTVHIITATQKTVDGPSGKLWCDSRGAAQNIIPASTGATKAVGKVIPELNGKLTGMA 253
Query: 775 FRVPTPNVSVVDLTCRLEKP----AKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS 942
RV +C + P +YDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS
Sbjct: 254 QRV----------SCGSDLPPGESCQYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS 303
Query: 943 DTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
DTHSSTFD GAG+ VKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 304 DTHSSTFDIGAGM------VKLISWYDNEFGYSNRVVDLMVHMASKE 344
>ref|XP_852804.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver
(GAPDH) [Canis familiaris].
Length = 351
Score = 560 bits (1442), Expect = e-159
Identities = 283/335 (84%), Positives = 294/335 (87%)
Frame = +1
Query: 79 DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTV 258
+T+VKVGVN FGRIG LVT AAFNSGKVD VAINDPFI+L+Y+VYMFQYDSTH KFH TV
Sbjct: 18 ETIVKVGVNRFGRIGHLVTTAAFNSGKVDTVAINDPFINLNYIVYMFQYDSTHSKFHSTV 77
Query: 259 KAENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVI 438
KA G L G + RDPANIKW DAGA YVVESTG+FTTMEKAGAHLKGGAKRVI
Sbjct: 78 KARIGNLSSMGSP-SPSSRRDPANIKWCDAGAEYVVESTGIFTTMEKAGAHLKGGAKRVI 136
Query: 439 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 618
I APSAD MFVMGVNHEK DNS KIVSNASCTTNCLAPLAKVIHDHF IVEGLMTTVHA
Sbjct: 137 IFAPSADVAMFVMGVNHEKCDNSFKIVSNASCTTNCLAPLAKVIHDHFSIVEGLMTTVHA 196
Query: 619 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 798
ITATQKTVDGPSGKLW + RGAAQNIIPASTGA KAVGKVIPE+NGKLTGM F VPTPN+
Sbjct: 197 ITATQKTVDGPSGKLWHNSRGAAQNIIPASTGATKAVGKVIPEMNGKLTGMTFCVPTPNI 256
Query: 799 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAG 978
SVVDLTCRLEK AKYDDIKKVVKQASEGPLKG LGY EDQVVSC+FNSDT SSTFD AG
Sbjct: 257 SVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGTLGYAEDQVVSCNFNSDTQSSTFDVKAG 316
Query: 979 IALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
IALNDHFVKLISWYDNEF YSN VDLMVHMASKE
Sbjct: 317 IALNDHFVKLISWYDNEFSYSNWAVDLMVHMASKE 351
>ref|XP_852254.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
familiaris].
Length = 407
Score = 556 bits (1432), Expect = e-158
Identities = 294/396 (74%), Positives = 313/396 (79%), Gaps = 14/396 (3%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYM---VYMFQYDSTHGKFHGT 255
MVKVGVNGFGRIGRLVTR + VD VAINDPFIDL+Y+ VYMFQYDSTHGKFHGT
Sbjct: 1 MVKVGVNGFGRIGRLVTRPS----PVDTVAINDPFIDLNYLLRHVYMFQYDSTHGKFHGT 56
Query: 256 VKAENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRV 435
VKAENGKLV+NGK+I+IFQERDPANIKWGDAGA YVVESTGVFTTMEKAG HLKGGAKRV
Sbjct: 57 VKAENGKLVLNGKSISIFQERDPANIKWGDAGADYVVESTGVFTTMEKAGPHLKGGAKRV 116
Query: 436 IISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVH 615
IISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTT+H
Sbjct: 117 IISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTIH 176
Query: 616 AITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPN 795
AITATQKTVD PSGKLWRDG+GAAQNII +STG KAVGKVIPELNGKLTGMAFRVPTPN
Sbjct: 177 AITATQKTVDSPSGKLWRDGQGAAQNIILSSTGTTKAVGKVIPELNGKLTGMAFRVPTPN 236
Query: 796 VSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGA 975
VSVVDLTCRLEK AKYDDIKKVVKQA EGPLKGILGYTEDQVVSCDFNSDTHSSTFD GA
Sbjct: 237 VSVVDLTCRLEKAAKYDDIKKVVKQALEGPLKGILGYTEDQVVSCDFNSDTHSSTFDTGA 296
Query: 976 GIA-----------LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE*EPLDHQPQQEHA 1122
GIA + + W+ + +S R + LDHQPQQE
Sbjct: 297 GIASMTTSSSSFPDMTMNLATATGWWTS---WSTR--------PPRSKSLLDHQPQQEQE 345
Query: 1123 RRKEALNCWGVTPQFDPPNNEASPDFSFIPNPRKKG 1230
K + P P + E + P PR +G
Sbjct: 346 EEKGPQLLGSLCPNLIPQHTENLLTSNLHPRPRGRG 381
>ref|XP_854937.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
familiaris].
Length = 314
Score = 548 bits (1411), Expect = e-156
Identities = 275/332 (82%), Positives = 288/332 (86%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
MVKVG NGFGRIG LVTRAAFNSGKVD+VAI+DPFIDL+YMVYM QYDSTHGKFH VKA
Sbjct: 1 MVKVGANGFGRIGHLVTRAAFNSGKVDLVAIDDPFIDLNYMVYMLQYDSTHGKFHCMVKA 60
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGK VINGK+I+IFQERDPANIKW D G GGAKRVIIS
Sbjct: 61 ENGKFVINGKSISIFQERDPANIKWDDTGVVL-------------------GGAKRVIIS 101
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
APSADAPMFVMGVNHEKYDNS KIVSNASC TNCL LAKVIHDHFGIVEGLMTT+HAIT
Sbjct: 102 APSADAPMFVMGVNHEKYDNSFKIVSNASCITNCLTSLAKVIHDHFGIVEGLMTTIHAIT 161
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
ATQKTVDGPSGKLW D +GAAQNIIP S G KAVG+VIPELNGKLTGMAF VPTPN+SV
Sbjct: 162 ATQKTVDGPSGKLWHDCQGAAQNIIPVSIGTTKAVGEVIPELNGKLTGMAFHVPTPNMSV 221
Query: 805 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
VDLTCRLEK AKYDDIKKVVKQAS+GPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 222 VDLTCRLEKAAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 281
Query: 985 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASK 1080
LNDHF KLISWYDNEF YSN+VVDL+V+MASK
Sbjct: 282 LNDHFAKLISWYDNEFVYSNQVVDLIVNMASK 313
>ref|XP_850054.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver
(GAPDH) [Canis familiaris].
Length = 321
Score = 540 bits (1390), Expect = e-153
Identities = 273/333 (81%), Positives = 289/333 (86%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
M GVNGFGRIGR+VTRAAFNSGKVDIVAINDPF DL+YMVYMFQYDSTHGKFH TVKA
Sbjct: 1 MKLAGVNGFGRIGRVVTRAAFNSGKVDIVAINDPFFDLNYMVYMFQYDSTHGKFHSTVKA 60
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGKLVINGK+I+I+Q+RDP NIKWGDAGA YVVESTGVFTTMEKAGAHLKG KRVIIS
Sbjct: 61 ENGKLVINGKSISIYQQRDPTNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGETKRVIIS 120
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
A SADAPMFVMG+NHEKYDNSLKIVSNASCTTNCL LAKV HDHF I+EG T V AI
Sbjct: 121 ASSADAPMFVMGMNHEKYDNSLKIVSNASCTTNCLTSLAKVTHDHFSIMEGFRTNVRAIA 180
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
ATQKT+ RG ++ PASTGAAKA GKVIPELNGK+TGMAF VPTPNVSV
Sbjct: 181 ATQKTL-----------RGCPEH-HPASTGAAKAEGKVIPELNGKVTGMAFHVPTPNVSV 228
Query: 805 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
VDL C LEK AKYDDIKKVVKQASEGPLKGILGY EDQVVSC+FN+DTHSSTFD GAGI
Sbjct: 229 VDLICHLEKAAKYDDIKKVVKQASEGPLKGILGYIEDQVVSCNFNNDTHSSTFDTGAGIV 288
Query: 985 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
LN+H VKLISWYDNEF YSN+VVDLMVHMASKE
Sbjct: 289 LNNHLVKLISWYDNEFSYSNQVVDLMVHMASKE 321
>ref|XP_853314.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
familiaris].
Length = 319
Score = 536 bits (1380), Expect = e-152
Identities = 275/334 (82%), Positives = 287/334 (85%), Gaps = 1/334 (0%)
Frame = +1
Query: 85 MVKV-GVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVK 261
MVKV GVNGFG IGRLVTRAAF+SGKVDIVAIND FIDL+YMVYMFQY STHGKFHGTVK
Sbjct: 1 MVKVVGVNGFGHIGRLVTRAAFDSGKVDIVAINDLFIDLNYMVYMFQYGSTHGKFHGTVK 60
Query: 262 AENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVII 441
AENGKL I+GK+I+I QE DPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAK VII
Sbjct: 61 AENGKLFISGKSISILQEGDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKMVII 120
Query: 442 SAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAI 621
SAPSADAPMFVMG+NH+KYDNSLKIVSNASCTT CL PLAKVIHDHF IVEGLMTTVHAI
Sbjct: 121 SAPSADAPMFVMGMNHKKYDNSLKIVSNASCTTKCLTPLAKVIHDHFAIVEGLMTTVHAI 180
Query: 622 TATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVS 801
TATQ+TVD P + GKVIPELNGKLTGMAF VPTPNVS
Sbjct: 181 TATQRTVDEHH---------------PCFHWCHQGCGKVIPELNGKLTGMAFHVPTPNVS 225
Query: 802 VVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGI 981
VVDL C LEK AKYDDIKKVVKQA EGP KGIL YTEDQVVSCDFNSDTHSST + GAGI
Sbjct: 226 VVDLNCCLEKAAKYDDIKKVVKQALEGPFKGILDYTEDQVVSCDFNSDTHSSTLNTGAGI 285
Query: 982 ALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
ALNDHF+KLISWYDNEFGYSNRVVDLMVH+ASKE
Sbjct: 286 ALNDHFIKLISWYDNEFGYSNRVVDLMVHVASKE 319
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,076,534
Number of extensions: 1448542
Number of successful extensions: 4986
Number of sequences better than 1.0e-05: 93
Number of HSP's gapped: 4915
Number of HSP's successfully gapped: 121
Length of query: 437
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 331
Effective length of database: 15,340,888
Effective search space: 5077833928
Effective search space used: 5077833928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000449
(1313 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002037.2| glyceraldehyde-3-phosphate dehydrogenase [Homo ... 640 0.0
Alignment gi|NP_055179.1| glyceraldehyde-3-phosphate dehydrogenase, testi... 467 e-131
>ref|NP_002037.2| glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens].
Length = 335
Score = 640 bits (1651), Expect = 0.0
Identities = 318/332 (95%), Positives = 323/332 (97%)
Frame = +1
Query: 88 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAE 267
VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL+YMVYMFQYDSTHGKFHGTVKAE
Sbjct: 4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAE 63
Query: 268 NGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISA 447
NGKLVING ITIFQERDP+ IKWGDAGA YVVESTGVFTTMEKAGAHL+GGAKRVIISA
Sbjct: 64 NGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISA 123
Query: 448 PSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITA 627
PSADAPMFVMGVNHEKYDNSLKI+SNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAITA
Sbjct: 124 PSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITA 183
Query: 628 TQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVV 807
TQKTVDGPSGKLWRDGRGA QNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPT NVSVV
Sbjct: 184 TQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVV 243
Query: 808 DLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIAL 987
DLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTE QVVS DFNSDTHSSTFDAGAGIAL
Sbjct: 244 DLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIAL 303
Query: 988 NDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
NDHFVKLISWYDNEFGYSNRVVDLM HMASKE
Sbjct: 304 NDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335
>ref|NP_055179.1| glyceraldehyde-3-phosphate dehydrogenase, testis-specific [Homo
sapiens].
Length = 408
Score = 467 bits (1201), Expect = e-131
Identities = 231/331 (69%), Positives = 273/331 (82%), Gaps = 1/331 (0%)
Frame = +1
Query: 94 VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENG 273
VG+NGFGRIGRLV RA G V +VA+NDPFID YMVYMF+YDSTHG++ G+V+ NG
Sbjct: 78 VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNG 136
Query: 274 KLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS 453
+LV++ I+++Q ++P I W G+ YVVESTGV+ +++ A H+ GA+RV+ISAPS
Sbjct: 137 QLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPS 196
Query: 454 ADAPMFVMGVNHEKYD-NSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITAT 630
DAPMFVMGVN Y+ S+ IVSNASCTTNCLAPLAKVIH+ FGIVEGLMTTVH+ TAT
Sbjct: 197 PDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYTAT 256
Query: 631 QKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVD 810
QKTVDGPS K WRDGRGA QNIIPASTGAAKAV KVIPEL GKLTGMAFRVPTP+VSVVD
Sbjct: 257 QKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVD 316
Query: 811 LTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALN 990
LTCRL +PA Y IK+ VK A++GP+ GIL YTED+VVS DF DTHSS FDA AGIALN
Sbjct: 317 LTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALN 376
Query: 991 DHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
D+FVKLISWYDNE+GYS+RVVDL+ +M S++
Sbjct: 377 DNFVKLISWYDNEYGYSHRVVDLLRYMFSRD 407
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,956,748
Number of extensions: 1419574
Number of successful extensions: 4599
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4590
Number of HSP's successfully gapped: 2
Length of query: 437
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 331
Effective length of database: 14,802,980
Effective search space: 4899786380
Effective search space used: 4899786380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000449
(1313 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001479421.2| PREDICTED: glyceraldehyde-3-phosphate dehydr... 652 0.0
Alignment gi|XP_001476757.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 638 0.0
Alignment gi|NP_032110.1| glyceraldehyde-3-phosphate dehydrogenase [Mus m... 638 0.0
Alignment gi|XP_003085825.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 635 0.0
Alignment gi|XP_003086358.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 627 e-180
Alignment gi|NP_032111.1| glyceraldehyde-3-phosphate dehydrogenase, testi... 467 e-131
Alignment gi|XP_003085822.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 443 e-124
Alignment gi|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus ... 88 2e-17
Alignment gi|XP_921350.3| PREDICTED: hypothetical protein LOC216818 [Mus ... 88 2e-17
>ref|XP_001479421.2| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like isoform 1
[Mus musculus].
Length = 409
Score = 652 bits (1682), Expect = 0.0
Identities = 327/359 (91%), Positives = 339/359 (94%), Gaps = 10/359 (2%)
Frame = +1
Query: 37 QTAVCS----------VHCQPRP*DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDP 186
Q A+CS V CQPRP D MVKVGVNGFGRIGRLVTRAA SGKV+IVAINDP
Sbjct: 51 QLALCSSLFQRQPHLLVQCQPRPVDKMVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDP 110
Query: 187 FIDLHYMVYMFQYDSTHGKFHGTVKAENGKLVINGKAITIFQERDPANIKWGDAGATYVV 366
FIDL+YMVYMFQYDSTHGKF+GTVKAENGKLVINGK ITIFQERDP NIKWG+AGA YVV
Sbjct: 111 FIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKPITIFQERDPTNIKWGEAGAEYVV 170
Query: 367 ESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNC 546
ESTGVFTTMEKAGAHLKGGAK+VIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNC
Sbjct: 171 ESTGVFTTMEKAGAHLKGGAKKVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNC 230
Query: 547 LAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKA 726
LAPLAKVIHD+FGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKA
Sbjct: 231 LAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKA 290
Query: 727 VGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY 906
VGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY
Sbjct: 291 VGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY 350
Query: 907 TEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
TEDQVVSCDFNS++HSSTFDAGAGIALND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 351 TEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 409
>ref|XP_001476757.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like isoform 2
[Mus musculus].
Length = 333
Score = 638 bits (1646), Expect = 0.0
Identities = 317/333 (95%), Positives = 327/333 (98%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
MVKVGVNGFGRIGRLVTRAA SGKV+IVAINDPFIDL+YMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA 60
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAIT 180
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 805 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS++HSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIA 300
Query: 985 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
LND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 301 LNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333
>ref|NP_032110.1| glyceraldehyde-3-phosphate dehydrogenase [Mus musculus].
Length = 333
Score = 638 bits (1646), Expect = 0.0
Identities = 317/333 (95%), Positives = 327/333 (98%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
MVKVGVNGFGRIGRLVTRAA SGKV+IVAINDPFIDL+YMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA 60
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAIT 180
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 805 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS++HSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIA 300
Query: 985 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
LND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 301 LNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333
>ref|XP_003085825.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Mus
musculus].
Length = 333
Score = 635 bits (1638), Expect = 0.0
Identities = 315/333 (94%), Positives = 325/333 (97%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
MVKVGVNGFGRIGRLVTRAA SGKV+IVAINDPFIDL+YMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA 60
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
PSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAIT
Sbjct: 121 TPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAIT 180
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGM FRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMTFRVPTPNVSV 240
Query: 805 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS++HSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIA 300
Query: 985 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
LND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 301 LNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333
>ref|XP_003086358.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Mus
musculus].
Length = 386
Score = 627 bits (1617), Expect = e-180
Identities = 313/343 (91%), Positives = 326/343 (95%)
Frame = +1
Query: 55 VHCQPRP*DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDST 234
V QPRP D MVKVGVNGFGRIGRLVTRAA SGKV++VAINDPFIDL+YMVYMFQYDST
Sbjct: 44 VQYQPRPVDKMVKVGVNGFGRIGRLVTRAAICSGKVEVVAINDPFIDLNYMVYMFQYDST 103
Query: 235 HGKFHGTVKAENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHL 414
H KF+GTVKA+NGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKA AHL
Sbjct: 104 HDKFNGTVKAKNGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKARAHL 163
Query: 415 KGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVE 594
KGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVE
Sbjct: 164 KGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVE 223
Query: 595 GLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMA 774
G MTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMA
Sbjct: 224 GHMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMA 283
Query: 775 FRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHS 954
F V TPNVSV+DLTC LEKPAKYDD KKVVKQASEGPLKGILGYTEDQVVSCDFNS++HS
Sbjct: 284 FHVSTPNVSVMDLTCCLEKPAKYDDTKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHS 343
Query: 955 STFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
STFDAGAGIALND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 344 STFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 386
>ref|NP_032111.1| glyceraldehyde-3-phosphate dehydrogenase, testis-specific [Mus
musculus].
Length = 438
Score = 467 bits (1201), Expect = e-131
Identities = 230/331 (69%), Positives = 270/331 (81%), Gaps = 1/331 (0%)
Frame = +1
Query: 94 VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENG 273
VG+NGFGRIGRLV R G + +VA+NDPFID YMVYMF+YDSTHG++ G V+ +NG
Sbjct: 108 VGINGFGRIGRLVLRVCMEKG-IRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGNVEHKNG 166
Query: 274 KLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS 453
+LV++ I +Q +DP I W G YVVE TGV+ ++E A AH+ GA+RV+++APS
Sbjct: 167 QLVVDNLEINTYQCKDPKEIPWSSIGNPYVVECTGVYLSIEAASAHISSGARRVVVTAPS 226
Query: 454 ADAPMFVMGVNHEKYD-NSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITAT 630
DAPMFVMGVN + Y+ S+ IVSNASCTTNCLAPLAKVIH++FGIVEGLMTTVH+ TAT
Sbjct: 227 PDAPMFVMGVNEKDYNPGSMTIVSNASCTTNCLAPLAKVIHENFGIVEGLMTTVHSYTAT 286
Query: 631 QKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVD 810
QKTVDGPS K WR GRGA QNIIP+STGAAKAVGKVIPEL GKLTGMAFRVPTPNVSVVD
Sbjct: 287 QKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELKGKLTGMAFRVPTPNVSVVD 346
Query: 811 LTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALN 990
LTCRL KPA Y I + VK A++GPL GIL YTEDQVVS DFN + HSS FDA AGIALN
Sbjct: 347 LTCRLAKPASYSAITEAVKAAAKGPLAGILAYTEDQVVSTDFNGNPHSSIFDAKAGIALN 406
Query: 991 DHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
D+FVKL++WYDNE+GYSNRVVDL+ +M S+E
Sbjct: 407 DNFVKLVAWYDNEYGYSNRVVDLLRYMFSRE 437
>ref|XP_003085822.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Mus
musculus].
Length = 321
Score = 443 bits (1140), Expect = e-124
Identities = 222/236 (94%), Positives = 227/236 (96%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
MVKVGVNGFGRIGRLVTRAA SGKV+IVAINDPFIDL+YMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA 60
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAIT 180
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP 792
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAF P
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFPCSYP 236
>ref|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus musculus].
Length = 239
Score = 87.8 bits (216), Expect = 2e-17
Identities = 39/69 (56%), Positives = 56/69 (81%)
Frame = -3
Query: 297 GLSIDDKLPVLRLDCAVELAVGGIILEHVDHVVEVNEGVIDGDNVHFARVKSSPGDQAPD 118
G IDDKLP+L LDCAVE A+GGIILEHVDH VEVNEGV+DG+N++FA+ ++ + +PD
Sbjct: 49 GFPIDDKLPILNLDCAVEFAMGGIILEHVDHAVEVNEGVVDGNNIYFAKCRT---EGSPD 105
Query: 117 AAKSVHSDL 91
+++ +++
Sbjct: 106 CSQAADTNV 114
Score = 82.8 bits (203), Expect = 5e-16
Identities = 42/57 (73%), Positives = 44/57 (77%)
Frame = -1
Query: 440 MMTLLAPPFK*APAFSMVVKTPVDSTTYVAPASPHLMLAGSRSWKMVMAFPLMTSFP 270
MMTLLAPPFK A A SMVVK PVDS TY APA+PH MLA SRSWKMVM FP+ P
Sbjct: 1 MMTLLAPPFKWALASSMVVKMPVDSITYSAPATPHSMLARSRSWKMVMGFPIDDKLP 57
>ref|XP_921350.3| PREDICTED: hypothetical protein LOC216818 [Mus musculus].
Length = 238
Score = 87.8 bits (216), Expect = 2e-17
Identities = 39/69 (56%), Positives = 56/69 (81%)
Frame = -3
Query: 297 GLSIDDKLPVLRLDCAVELAVGGIILEHVDHVVEVNEGVIDGDNVHFARVKSSPGDQAPD 118
G IDDKLP+L LDCAVE A+GGIILEHVDH VEVNEGV+DG+N++FA+ ++ + +PD
Sbjct: 48 GFPIDDKLPILNLDCAVEFAMGGIILEHVDHAVEVNEGVVDGNNIYFAKCRT---EGSPD 104
Query: 117 AAKSVHSDL 91
+++ +++
Sbjct: 105 CSQAADTNV 113
Score = 80.9 bits (198), Expect = 2e-15
Identities = 41/56 (73%), Positives = 43/56 (76%)
Frame = -1
Query: 437 MTLLAPPFK*APAFSMVVKTPVDSTTYVAPASPHLMLAGSRSWKMVMAFPLMTSFP 270
MTLLAPPFK A A SMVVK PVDS TY APA+PH MLA SRSWKMVM FP+ P
Sbjct: 1 MTLLAPPFKWALASSMVVKMPVDSITYSAPATPHSMLARSRSWKMVMGFPIDDKLP 56
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,133,040
Number of extensions: 1180074
Number of successful extensions: 3856
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3842
Number of HSP's successfully gapped: 11
Length of query: 437
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 333
Effective length of database: 12,493,815
Effective search space: 4160440395
Effective search space used: 4160440395
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000449
(1313 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193288.1| glyceraldehyde-3-phosphate dehydrogenase [Su... 672 0.0
Alignment gi|XP_003127098.2| PREDICTED: glyceraldehyde-3-phosphate dehydr... 404 e-113
Alignment gi|XP_003361616.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 237 9e-63
Alignment gi|XP_003355919.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 188 5e-48
>ref|NP_001193288.1| glyceraldehyde-3-phosphate dehydrogenase [Sus scrofa].
Length = 333
Score = 672 bits (1734), Expect = 0.0
Identities = 333/333 (100%), Positives = 333/333 (100%)
Frame = +1
Query: 85 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 60
Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180
Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 805 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300
Query: 985 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 301 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>ref|XP_003127098.2| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase,
testis-specific-like [Sus scrofa].
Length = 397
Score = 404 bits (1039), Expect = e-113
Identities = 196/288 (68%), Positives = 239/288 (82%), Gaps = 1/288 (0%)
Frame = +1
Query: 94 VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENG 273
VG+NGFGRIGRLV RA G V +VA+NDPFID YMVYMF+YDSTHG++ GTV+ +N
Sbjct: 74 VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGTVEYKND 132
Query: 274 KLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS 453
KLV++ + I +FQ + P +I W G+ +VVE+TGV+ ++E+ HL+ GA+RV+I APS
Sbjct: 133 KLVVDTREINVFQCKQPKDIPWKSVGSPFVVEATGVYLSLEETSPHLEAGAQRVVICAPS 192
Query: 454 ADAPMFVMGVNHEKYD-NSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITAT 630
DAPMFVMGVN + Y+ ++KIVSNASCTTNCLAPLAKVIH+ FGI+EGLMTTVH+ TAT
Sbjct: 193 PDAPMFVMGVNEKDYNPGTMKIVSNASCTTNCLAPLAKVIHERFGILEGLMTTVHSYTAT 252
Query: 631 QKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVD 810
QKTVDGPS K WRDGRGA QNIIPASTGAAKAVGK+IP+L GKLTGMAFRVPTP+VSVVD
Sbjct: 253 QKTVDGPSKKAWRDGRGAHQNIIPASTGAAKAVGKIIPDLKGKLTGMAFRVPTPDVSVVD 312
Query: 811 LTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHS 954
LTCRL +P +Y IK+ +K+A++GP+ GIL YTED+VVS DF SDTHS
Sbjct: 313 LTCRLAQPTQYSAIKEAIKEAAKGPMAGILAYTEDEVVSTDFVSDTHS 360
>ref|XP_003361616.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like, partial
[Sus scrofa].
Length = 126
Score = 237 bits (605), Expect = 9e-63
Identities = 117/118 (99%), Positives = 117/118 (99%)
Frame = +1
Query: 598 LMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAF 777
L TTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAF
Sbjct: 9 LQTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAF 68
Query: 778 RVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH 951
RVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH
Sbjct: 69 RVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH 126
>ref|XP_003355919.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase,
testis-specific-like [Sus scrofa].
Length = 252
Score = 188 bits (478), Expect = 5e-48
Identities = 100/163 (61%), Positives = 119/163 (73%), Gaps = 3/163 (1%)
Frame = +1
Query: 475 MGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLM---TTVHAITATQKTVD 645
+G NH ++L + S TT L + G+ L TTVH+ TATQKTVD
Sbjct: 83 LGRNHSP-PSTLTVHSPTWVTTVGLGKTNTGAWEQEGLTSALFFSKTTVHSYTATQKTVD 141
Query: 646 GPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRL 825
GPS K WRDGRGA QNIIPASTGAAKAVGK+IP+L GKLTGMAFRVPTP+VSVVDLTCRL
Sbjct: 142 GPSKKAWRDGRGAHQNIIPASTGAAKAVGKIIPDLKGKLTGMAFRVPTPDVSVVDLTCRL 201
Query: 826 EKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHS 954
+P +Y IK+ +K+A++GP+ GIL YTED+VVS DF SDTHS
Sbjct: 202 AQPTQYSAIKEAIKEAAKGPMAGILAYTEDEVVSTDFVSDTHS 244
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,742,561
Number of extensions: 941209
Number of successful extensions: 2959
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2952
Number of HSP's successfully gapped: 4
Length of query: 437
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 335
Effective length of database: 8,804,438
Effective search space: 2949486730
Effective search space used: 2949486730
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000449
(1313 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894812.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 305 3e-80
Sscrofa_Chr05 297 8e-78
gb|GL894823.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 232 4e-58
gb|GL892590.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 204 9e-50
gb|GL896384.1| Sus scrofa unplaced genomic scaffold chrU_scaffold73 174 8e-41
gb|GL896556.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 170 1e-39
Sscrofa_Chr02 159 5e-36
gb|GL893763.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 123 3e-25
Sscrofa_ChrX 84 2e-13
Sscrofa_Chr06 84 2e-13
>gb|GL894812.1| Sus scrofa unplaced genomic scaffold chrU_scaffold344
Length = 661
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 603 gaccacggtccatgccatcactgccacccagaagactgtggatggcccgtctgggaagct 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaccacggtccatgccatcactgccacccagaagactgtggatggcccgtctgggaagct 549
Query: 663 gtggcgtgatggccgaggggctgcccagaacatcatccctgcttctaccggcgctgccaa 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtggcgtgatggccgaggggctgcccagaacatcatccctgcttctaccggcgctgccaa 489
Query: 723 ggctgtgggcaaggtcatccctgagctcaacggg 756
||||||||||||||||||||||||||||||||||
Sbjct: 488 ggctgtgggcaaggtcatccctgagctcaacggg 455
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 835 gcaaaatatgatgacatcaagaaggtggtgaagcaggcgtccgagggccccctcaagggc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gcaaaatatgatgacatcaagaaggtggtgaagcaggcgtccgagggccccctcaagggc 147
Query: 895 atcctgggctacactgaggaccaggt 920
||||||||||||||||||||||||||
Sbjct: 146 atcctgggctacactgaggaccaggt 121
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 755 ggaagctcactggcatggccttccgtgtccccacccccaacgtgtcggttgtggatctga 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggaagctcactggcatggccttccgtgtccccacccccaacgtgtcggttgtggatctga 310
Query: 815 cctgccgcctggagaaacctg 835
|||||||||||||||||||||
Sbjct: 309 cctgccgcctggagaaacctg 289
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 915 ccaggttgtgtcctgtgacttcaacagtgacactcactcttc 956
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 ccaggttgtgtcctgtgacttcaacagtgacactcactcttc 1
>Sscrofa_Chr05
|| Length = 111506441
Score = 297 bits (150), Expect = 8e-78
Identities = 212/226 (93%), Gaps = 5/226 (2%)
Strand = Plus / Plus
Query: 1016 ggtacgacaatgaatttggctacagcaacagggtggtggacctcatggtccacatggcct 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449237 ggtacgacaatgaatttggctacagcaacagggtggtggacctcatggtccacatggcct 66449296
Query: 1076 ccaaggagtaagagcccctggaccaccaaccccagcaagagcacgcgaggaggaaagagg 1135
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 66449297 ccaaggagtaagagcccctggaccaccaaccccagcaagagcacgcgaggaggagagagg 66449356
Query: 1136 ccctcaactgctggggagtcaca-ccccaattcgatcccccaa-acaacgaagcatctcc 1193
|||||| |||||||||||||||| |||||| |||||||||||| ||| || |||||||||
Sbjct: 66449357 ccctcagctgctggggagtcacagccccaactcgatcccccaacacaccg-agcatctcc 66449415
Query: 1194 tgactt-tagttt-catcccaaacccccgaaaaaagggaaggggct 1237
|||||| ||||| ||||||| ||||||| || ||||| |||||||
Sbjct: 66449416 tgacttccagtttccatcccagacccccggaagaaggggaggggct 66449461
Score = 192 bits (97), Expect = 3e-46
Identities = 103/105 (98%)
Strand = Plus / Plus
Query: 915 ccaggttgtgtcctgtgacttcaacagtgacactcactcttctacctttgatgctggggc 974
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 66449019 ccaggttgtgtcctgtgacttcaacagtgacactcactcttccacttttgatgctggggc 66449078
Query: 975 tggcattgccctcaacgaccacttcgtcaagctcatttcctggta 1019
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449079 tggcattgccctcaacgaccacttcgtcaagctcatttcctggta 66449123
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 835 gcaaaatatgatgacatcaagaaggtggtgaagcaggcgtccgagggccccctcaagggc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66448855 gcaaaatatgatgacatcaagaaggtggtgaagcaggcgtccgagggccccctcaagggc 66448914
Query: 895 atcctgggctacactgaggaccaggt 920
||||||||||||||||||||||||||
Sbjct: 66448915 atcctgggctacactgaggaccaggt 66448940
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 755 ggaagctcactggcatggccttccgtgtccccacccccaacgtgtcggttgtggatctga 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66448692 ggaagctcactggcatggccttccgtgtccccacccccaacgtgtcggttgtggatctga 66448751
Query: 815 cctgccgcctggagaaacctg 835
|||||||||||||||||||||
Sbjct: 66448752 cctgccgcctggagaaacctg 66448772
Score = 147 bits (74), Expect = 2e-32
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 107 gatttggccgcatcgggcgcctggtcaccagggctgcttttaactctggcaaagtggaca 166
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 66448472 gatttggccgcatcgggcgcctggtcacccaggctgcttttaactctggcaaagtggaca 66448531
Query: 167 ttgtcgccatcaatgacccctt 188
||||||||||||||||||||||
Sbjct: 66448532 ttgtcgccatcaatgacccctt 66448553
Score = 105 bits (53), Expect = 6e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 14 gctctctgctcctccccgttcgacagacagccgtgtgttccgtgcattgccag 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66446331 gctctctgctcctccccgttcgacagacagccgtgtgttccgtgcattgccag 66446383
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 64 cagccgcgtccctgagacacgatggtgaaggtcggagtgaacgg 107
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66446654 cagccgcgtccctgagacacgatggtgaaggtcggagtgaacgg 66446697
Score = 60.0 bits (30), Expect = 3e-06
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 125 gcctggtcaccagggctgcttttaactctggcaaagtg 162
||||||||||||| ||| ||||||||||||||||||||
Sbjct: 88444900 gcctggtcaccagagctacttttaactctggcaaagtg 88444937
>gb|GL894823.1| Sus scrofa unplaced genomic scaffold chrU_scaffold345
Length = 670
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 405 ggctcacttgaagggtggggccaagagggtcatcatctctgccccttctgccgatgcccc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ggctcacttgaagggtggggccaagagggtcatcatctctgccccttctgccgatgcccc 86
Query: 465 catgtttgtgatgggcgtgaaccatgagaagtatgacaactccctcaagatcgtcag 521
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 catgtttgtgatgggcgtgaaccatgagaagtatgacaactccctcaagatcgtcag 29
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 207 ggtctacatgttccagtatgattccacccacggcaagttccacggcacagtcaaggcgga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ggtctacatgttccagtatgattccacccacggcaagttccacggcacagtcaaggcgga 531
Query: 267 gaacgggaagcttgtcatcaatggaaaggccatcaccatcttccaggag 315
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaacgggaagcttgtcatcaatggaaaggccatcaccatcttccaggag 482
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 315 gcgagatcccgccaacatcaaatggggcgatgctggtgctacgtatgttgtggagtccac 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcgagatcccgccaacatcaaatggggcgatgctggtgctacgtatgttgtggagtccac 302
Query: 375 tggtgtcttcacgaccatggagaaggccgggg 406
||||||||||||||||||||||||||||||||
Sbjct: 301 tggtgtcttcacgaccatggagaaggccgggg 270
>gb|GL892590.1| Sus scrofa unplaced genomic scaffold chrU_scaffold144
Length = 184
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 107 gatttggccgcatcgggcgcctggtcaccagggctgcttttaactctggcaaagtggaca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gatttggccgcatcgggcgcctggtcaccagggctgcttttaactctggcaaagtggaca 65
Query: 167 ttgtcgccatcaatgaccccttcattgacctccactacatggt 209
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ttgtcgccatcaatgaccccttcattgacctccactacatggt 22
>gb|GL896384.1| Sus scrofa unplaced genomic scaffold chrU_scaffold73
Length = 130
Score = 174 bits (88), Expect = 8e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 932 acttcaacagtgacactcactcttctacctttgatgctggggctggcattgccctcaacg 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 acttcaacagtgacactcactcttctacctttgatgctggggctggcattgccctcaacg 71
Query: 992 accacttcgtcaagctcatttcctggta 1019
||||||||||||||||||||||||||||
Sbjct: 70 accacttcgtcaagctcatttcctggta 43
>gb|GL896556.1| Sus scrofa unplaced genomic scaffold chrU_scaffold885
Length = 1756
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 518 tcagcaatgcctcctgcaccaccaactgcttggcacccctggccaaggtcatccatgacc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcagcaatgcctcctgcaccaccaactgcttggcacccctggccaaggtcatccatgacc 207
Query: 578 acttcggcatcgtggagggactcatg 603
||||||||||||||||||||||||||
Sbjct: 206 acttcggcatcgtggagggactcatg 181
Score = 99.6 bits (50), Expect = 4e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 14 gctctctgctcctccccgttcgacagacagccgtgtgttccgtgcattgc 63
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gctctctgctcctccccgttcgacagacagccgtgtgttccgtgcattgc 681
>Sscrofa_Chr02
|| Length = 162569375
Score = 159 bits (80), Expect = 5e-36
Identities = 310/385 (80%), Gaps = 15/385 (3%)
Strand = Plus / Plus
Query: 358 tatgttgtggagtccactggtgtcttcacgaccatggagaaggccggggctcacttgaag 417
|||||| |||||||||||| ||||||||| | | ||||||||| | ||||| || |||
Sbjct: 33948375 tatgttttggagtccactgttgtcttcaccaacttggagaaggttgaggctccctggaaa 33948434
Query: 418 ggtggggccaagagggtcatcatc---tctgccccttctgccgatgcccccatgtttgtg 474
| ||| || | |||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 33948435 gatggagcagaaagggtcatcatcatctctgccccttctgctgaggcccccatgtttg-- 33948492
Query: 475 atgggcgtgaaccatgagaagtatgacaactccctcaagatcgtcagcaatgcctcctgc 534
||| | || ||||||||||||||||| ||||| |||| | || ||||| || | |
Sbjct: 33948493 ---ggcataaatcatgagaagtatgacaataccctccagattattagtaatgcttcttcc 33948549
Query: 535 accaccaactgcttggcacccctggccaaggtcatccatgaccacttcggcatcgtggag 594
|| ||| || |||||| || ||||||||||||||||||||| |||| ||||| ||
Sbjct: 33948550 actgccacctacttggcccctctggccaaggtcatccatgacaactttggcatggt---- 33948605
Query: 595 ggactcatgaccacggtccatgccatcactgccacccagaagactgtggatggcccgtct 654
||||| |||||| ||| ||||||||||||||||| |||||| | ||||| | |||
Sbjct: 33948606 --actcaggaccacagtctatgccatcactgccacctagaagatcgcagatggttcttct 33948663
Query: 655 gggaagctgtggcgtgatggccgaggggctgcccagaacatcatccctgcttctaccggc 714
|||||||||||| | ||||| | |||||||||||||| ||||||||||||||| || |
Sbjct: 33948664 aggaagctgtggcataatggctgtggggctgcccagaagctcatccctgcttcta-cgac 33948722
Query: 715 gctgccaaggctgtgggcaaggtca 739
||||||||||||||||||||||||
Sbjct: 33948723 actgccaaggctgtgggcaaggtca 33948747
Score = 69.9 bits (35), Expect = 3e-09
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 961 tttgatgctggggctggcattgccctcaacgaccacttcgtcaagctcatttcctggtac 1020
||||||||||| |||||||||||||||| ||| |||| ||| | |||||||||| |
Sbjct: 33948965 tttgatgctggagctggcattgccctcagtgactactttttcaggttcatttcctgctgt 33949024
Query: 1021 gacaatgaatttggctacagcaa 1043
|||||||| ||||||||||||||
Sbjct: 33949025 gacaatgagtttggctacagcaa 33949047
>gb|GL893763.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2496
Length = 115851
Score = 123 bits (62), Expect = 3e-25
Identities = 108/122 (88%), Gaps = 1/122 (0%)
Strand = Plus / Minus
Query: 982 gccctcaacgaccacttcgtcaagctcatttcctggtacgacaatgaatttggctacagc 1041
|||||||| | |||||| |||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 85577 gccctcaatgcccactttgtcaagctcatttcctagtatgaca-tgaatttggctacagc 85519
Query: 1042 aacagggtggtggacctcatggtccacatggcctccaaggagtaagagcccctggaccac 1101
||||||||| ||||| |||| || ||||||||| | ||||||||||||| |||||||||
Sbjct: 85518 aacagggtgatggacttcattgttcacatggccacaaaggagtaagagctgctggaccac 85459
Query: 1102 ca 1103
||
Sbjct: 85458 ca 85457
>Sscrofa_ChrX
|| Length = 144288218
Score = 83.8 bits (42), Expect = 2e-13
Identities = 84/98 (85%)
Strand = Plus / Minus
Query: 320 atcccgccaacatcaaatggggcgatgctggtgctacgtatgttgtggagtccactggtg 379
|||| ||||||||||||| ||| | ||||| |||| ||||||||| |||||||||||||
Sbjct: 107701676 atcctgccaacatcaaatagggtgctgctgctgctgagtatgttgtagagtccactggtg 107701617
Query: 380 tcttcacgaccatggagaaggccggggctcacttgaag 417
|||| || ||| |||||| ||| ||||||||| |||||
Sbjct: 107701616 tctttactaccttggagatggctggggctcacatgaag 107701579
Score = 81.8 bits (41), Expect = 9e-13
Identities = 116/141 (82%)
Strand = Plus / Minus
Query: 897 cctgggctacactgaggaccaggttgtgtcctgtgacttcaacagtgacactcactcttc 956
||||| ||||||||||||||| || | ||||||| || | ||||||| | |||||| |
Sbjct: 107701143 cctggactacactgaggaccaagtcttctcctgtggatttagcagtgacccccactctcc 107701084
Query: 957 tacctttgatgctggggctggcattgccctcaacgaccacttcgtcaagctcatttcctg 1016
| |||| | ||| |||||||||| || ||||| || |||| ||||||||||||| |||
Sbjct: 107701083 ttccttagttgcgaaggctggcattaccatcaacaactactttgtcaagctcatttactg 107701024
Query: 1017 gtacgacaatgaatttggcta 1037
||| |||||||||||||||||
Sbjct: 107701023 gtatgacaatgaatttggcta 107701003
>Sscrofa_Chr06
|| Length = 157765593
Score = 83.8 bits (42), Expect = 2e-13
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 518 tcagcaatgcctcctgcaccaccaactgcttggcacccctggccaaggtcatccatga 575
||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 40369609 tcagcaacgcctcctgcaccaccaactgcctggcccccctcgccaaggtcatccatga 40369552
Score = 67.9 bits (34), Expect = 1e-08
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 687 ccagaacatcatccctgcttctaccggcgctgccaaggctgtgggcaaggtcatccctga 746
|||||||||||||||||| || || || |||||||||||||||||||| ||||||| ||
Sbjct: 40369136 ccagaacatcatccctgcctccacaggggctgccaaggctgtgggcaaaatcatcccaga 40369077
Query: 747 gctcaa 752
|||||
Sbjct: 40369076 cctcaa 40369071
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,393,279
Number of extensions: 181
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 29
Length of query: 1313
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1292
Effective length of database: 2,808,413,156
Effective search space: 3628469797552
Effective search space used: 3628469797552
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)