Animal-Genome cDNA 20110601C-000449


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000449
         (1313 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029206.1| glyceraldehyde-3-phosphate dehydrogenase [Bo...   662   0.0  
Alignment   gi|XP_001252512.1| PREDICTED: glyceraldehyde-3-phosphate dehydr...   662   0.0  
Alignment   gi|XP_002704508.1| PREDICTED: glyceraldehyde-3-phosphate dehydr...   662   0.0  
Alignment   gi|NP_001035642.1| glyceraldehyde-3-phosphate dehydrogenase, te...   471   e-133
Alignment   gi|XP_002684960.1| PREDICTED: glyceraldehyde-3-phosphate dehydr...   250   2e-66
Alignment   gi|XP_873258.1| PREDICTED: glyceraldehyde-3-phosphate dehydroge...   250   2e-66

>ref|NP_001029206.1| glyceraldehyde-3-phosphate dehydrogenase [Bos taurus].
          Length = 333

 Score =  662 bits (1709), Expect = 0.0
 Identities = 328/333 (98%), Positives = 332/333 (99%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
            MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF+GTVKA
Sbjct: 1    MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKA 60

Query: 265  ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
            ENGKLVINGKAITIFQERDPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61   ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120

Query: 445  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
            APSADAPMFVMGVNHEKY+N+LKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121  APSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180

Query: 625  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
            ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240

Query: 805  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
            VDLTCRLEKPAKYD+IKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241  VDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300

Query: 985  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 301  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333


>ref|XP_001252512.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like isoform 2
            [Bos taurus].
          Length = 333

 Score =  662 bits (1709), Expect = 0.0
 Identities = 328/333 (98%), Positives = 332/333 (99%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
            MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF+GTVKA
Sbjct: 1    MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKA 60

Query: 265  ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
            ENGKLVINGKAITIFQERDPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61   ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120

Query: 445  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
            APSADAPMFVMGVNHEKY+N+LKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121  APSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180

Query: 625  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
            ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240

Query: 805  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
            VDLTCRLEKPAKYD+IKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241  VDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300

Query: 985  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 301  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333


>ref|XP_002704508.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Bos
            taurus].
          Length = 333

 Score =  662 bits (1709), Expect = 0.0
 Identities = 328/333 (98%), Positives = 332/333 (99%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
            MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF+GTVKA
Sbjct: 1    MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKA 60

Query: 265  ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
            ENGKLVINGKAITIFQERDPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61   ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120

Query: 445  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
            APSADAPMFVMGVNHEKY+N+LKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121  APSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180

Query: 625  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
            ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240

Query: 805  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
            VDLTCRLEKPAKYD+IKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241  VDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300

Query: 985  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 301  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333


>ref|NP_001035642.1| glyceraldehyde-3-phosphate dehydrogenase, testis-specific [Bos
            taurus].
          Length = 395

 Score =  471 bits (1213), Expect = e-133
 Identities = 230/331 (69%), Positives = 277/331 (83%), Gaps = 1/331 (0%)
 Frame = +1

Query: 94   VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENG 273
            VG+NGFGRIGRLV RA    G V +VA+NDPFIDL YMVYMF+YDSTHG++ G V+ + G
Sbjct: 65   VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDLEYMVYMFKYDSTHGRYKGNVEHKKG 123

Query: 274  KLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS 453
            +LV++   I++FQ + P  I W   G+ +VVE+TGV+ ++E+  AH++ GA+RV+I APS
Sbjct: 124  QLVVDNNEISVFQCKQPKEIPWKSVGSPFVVEATGVYLSLEETKAHIEAGAQRVVICAPS 183

Query: 454  ADAPMFVMGVNHEKYD-NSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITAT 630
             DAPMFVMGVN ++Y+ +S+KIVSNASCTTNCLAPLAKVIH+ FGI+EGLMTTVH+ TAT
Sbjct: 184  PDAPMFVMGVNEKEYNPSSMKIVSNASCTTNCLAPLAKVIHERFGILEGLMTTVHSYTAT 243

Query: 631  QKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVD 810
            QKTVDGPS K WRDGRGA QNIIPASTGAAKAVGKVIP+L GKLTGMAFRVPTP+VSVVD
Sbjct: 244  QKTVDGPSKKAWRDGRGAHQNIIPASTGAAKAVGKVIPDLKGKLTGMAFRVPTPDVSVVD 303

Query: 811  LTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALN 990
            LTCRL +P  Y  IK  +K A++GP+ GIL YTED+VVS DF SDTHSS FDA AGIALN
Sbjct: 304  LTCRLAQPTPYSAIKDAIKAAAKGPMAGILAYTEDEVVSTDFLSDTHSSIFDAKAGIALN 363

Query: 991  DHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            D+FVKLISWYDNE+GYSNRVVDL+ +M S++
Sbjct: 364  DNFVKLISWYDNEYGYSNRVVDLVRYMFSRD 394


>ref|XP_002684960.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Bos
            taurus].
          Length = 183

 Score =  250 bits (638), Expect = 2e-66
 Identities = 122/125 (97%), Positives = 124/125 (99%)
 Frame = +1

Query: 709  TGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPL 888
            TGAAKAVGKVIPELNGKLTGMAFR+PTPNVSVVDLTC LEKPAKYD+IKKVVKQASEGPL
Sbjct: 59   TGAAKAVGKVIPELNGKLTGMAFRLPTPNVSVVDLTCHLEKPAKYDEIKKVVKQASEGPL 118

Query: 889  KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH 1068
            KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH
Sbjct: 119  KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH 178

Query: 1069 MASKE 1083
            MASKE
Sbjct: 179  MASKE 183


>ref|XP_873258.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Bos
            taurus].
          Length = 183

 Score =  250 bits (638), Expect = 2e-66
 Identities = 122/125 (97%), Positives = 124/125 (99%)
 Frame = +1

Query: 709  TGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPL 888
            TGAAKAVGKVIPELNGKLTGMAFR+PTPNVSVVDLTC LEKPAKYD+IKKVVKQASEGPL
Sbjct: 59   TGAAKAVGKVIPELNGKLTGMAFRLPTPNVSVVDLTCHLEKPAKYDEIKKVVKQASEGPL 118

Query: 889  KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH 1068
            KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH
Sbjct: 119  KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH 178

Query: 1069 MASKE 1083
            MASKE
Sbjct: 179  MASKE 183


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,885,249
Number of extensions: 1419187
Number of successful extensions: 4610
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4597
Number of HSP's successfully gapped: 6
Length of query: 437
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 332
Effective length of database: 14,207,134
Effective search space: 4716768488
Effective search space used: 4716768488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000449
         (1313 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001003142.1| glyceraldehyde-3-phosphate dehydrogenase [Ca...   658   0.0  
Alignment   gi|XP_853318.1| PREDICTED: similar to glyceraldehyde-3-phosphat...   628   e-180
Alignment   gi|XP_534639.1| PREDICTED: similar to glyceraldehyde-3-phosphat...   625   e-179
Alignment   gi|XP_849606.1| PREDICTED: similar to glyceraldehyde-3-phosphat...   605   e-173
Alignment   gi|XP_549000.2| PREDICTED: similar to Glyceraldehyde-3-phosphat...   567   e-162
Alignment   gi|XP_852804.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...   560   e-159
Alignment   gi|XP_852254.1| PREDICTED: similar to glyceraldehyde-3-phosphat...   556   e-158
Alignment   gi|XP_854937.1| PREDICTED: similar to glyceraldehyde-3-phosphat...   548   e-156
Alignment   gi|XP_850054.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...   540   e-153
Alignment   gi|XP_853314.1| PREDICTED: similar to glyceraldehyde-3-phosphat...   536   e-152

>ref|NP_001003142.1| glyceraldehyde-3-phosphate dehydrogenase [Canis lupus familiaris].
          Length = 333

 Score =  658 bits (1698), Expect = 0.0
 Identities = 326/333 (97%), Positives = 331/333 (99%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
            MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL+YMVYMFQYDSTHGKFHGTVKA
Sbjct: 1    MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA 60

Query: 265  ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
            ENGKLVINGK+I+IFQERDPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61   ENGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120

Query: 445  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
            APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180

Query: 625  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
            ATQKTVDGPSGK+WRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181  ATQKTVDGPSGKMWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240

Query: 805  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
            VDLTCRLEK AKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241  VDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300

Query: 985  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            LNDHFVKLISWYDNEFGYSNRVVDLMV+MASKE
Sbjct: 301  LNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333


>ref|XP_853318.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
            familiaris].
          Length = 333

 Score =  628 bits (1619), Expect = e-180
 Identities = 314/333 (94%), Positives = 317/333 (95%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
            MVKVGVN FG IG LVTRAAFNSGKVDIVAINDPFIDL+YMVYMFQYDSTH KFHGTVKA
Sbjct: 1    MVKVGVNRFGHIGHLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHSKFHGTVKA 60

Query: 265  ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
            ENGKLVINGK+I+IFQERDP NIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61   ENGKLVINGKSISIFQERDPVNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120

Query: 445  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
            APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHF IVEGLMTTVHAI 
Sbjct: 121  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFSIVEGLMTTVHAIP 180

Query: 625  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
            ATQKTVDGPSGKLW DGRGAAQNIIPASTGAAKAVG VIPELNGKLTGMAFR PTPNVSV
Sbjct: 181  ATQKTVDGPSGKLWCDGRGAAQNIIPASTGAAKAVGNVIPELNGKLTGMAFRDPTPNVSV 240

Query: 805  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
            VDLTCRLEK AKYDD KKVVKQASE PLKGILGYTEDQVVSCDFNSDTHSSTFD GAGIA
Sbjct: 241  VDLTCRLEKAAKYDDNKKVVKQASEDPLKGILGYTEDQVVSCDFNSDTHSSTFDVGAGIA 300

Query: 985  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            LNDHFVKLISWYDNEF YSNRVVDLMVHMASKE
Sbjct: 301  LNDHFVKLISWYDNEFCYSNRVVDLMVHMASKE 333


>ref|XP_534639.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
            familiaris].
          Length = 334

 Score =  625 bits (1612), Expect = e-179
 Identities = 309/333 (92%), Positives = 319/333 (95%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
            MVKV VNGFG IGRLVTR AFNSGKVDIVAINDPFIDL+YMVYMFQYDSTHGKFHGTVKA
Sbjct: 2    MVKVRVNGFGCIGRLVTRTAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA 61

Query: 265  ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
            ENGKL+INGK+I+IFQERDPANIKWGDAGA YVVESTGVFTTMEK GAHLKGGAKRVIIS
Sbjct: 62   ENGKLIINGKSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKVGAHLKGGAKRVIIS 121

Query: 445  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
            APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPL+K+IHDHFGIVEGL+TTVHAIT
Sbjct: 122  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLSKIIHDHFGIVEGLITTVHAIT 181

Query: 625  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
            ATQKTVDGPSGKLW DGR AAQNIIPASTGAAKA+GKVIPELN KLTGM F VPTPNVSV
Sbjct: 182  ATQKTVDGPSGKLWHDGRVAAQNIIPASTGAAKAMGKVIPELNRKLTGMVFHVPTPNVSV 241

Query: 805  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
            VDLTC LEK AKYDDIKKVVKQASEGPLKGILGYTED VVSCDFNSDTHSSTFDAGAGIA
Sbjct: 242  VDLTCCLEKAAKYDDIKKVVKQASEGPLKGILGYTEDPVVSCDFNSDTHSSTFDAGAGIA 301

Query: 985  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            LND+FVK+ISWYDNEFGYSNRVVDLMVHM SKE
Sbjct: 302  LNDNFVKIISWYDNEFGYSNRVVDLMVHMTSKE 334


>ref|XP_849606.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
            familiaris].
          Length = 333

 Score =  605 bits (1560), Expect = e-173
 Identities = 302/333 (90%), Positives = 312/333 (93%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
            MVKVGVNGFG IG LVTRAAFNSG+VDIV+INDPFID +YMVYMFQYDSTHGKFH TVKA
Sbjct: 1    MVKVGVNGFGHIGCLVTRAAFNSGRVDIVSINDPFIDFNYMVYMFQYDSTHGKFHHTVKA 60

Query: 265  ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
            ENGKLVINGKAI+IFQERDPANIKWGDAGA YVVESTGVFTTMEK GAHLKG AKRVI+S
Sbjct: 61   ENGKLVINGKAISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKTGAHLKGRAKRVILS 120

Query: 445  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
            APS+ APMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDH GIVEGLMTTVHAIT
Sbjct: 121  APSSGAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHLGIVEGLMTTVHAIT 180

Query: 625  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
            ATQKT+DGPSGKLW DGRG AQNII ASTGA KA+GKVIPELN KLTGMAF VP PNVSV
Sbjct: 181  ATQKTMDGPSGKLWHDGRGTAQNIISASTGATKAMGKVIPELNRKLTGMAFHVPIPNVSV 240

Query: 805  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
            VDLTCRLEK AKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDT+SSTF+A AGIA
Sbjct: 241  VDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTYSSTFNAEAGIA 300

Query: 985  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            LNDHFVKLISW DNEF YSN VVDLMVHMASKE
Sbjct: 301  LNDHFVKLISWSDNEFSYSNWVVDLMVHMASKE 333


>ref|XP_549000.2| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase
            (GAPDH) [Canis familiaris].
          Length = 344

 Score =  567 bits (1461), Expect = e-162
 Identities = 293/347 (84%), Positives = 304/347 (87%), Gaps = 4/347 (1%)
 Frame = +1

Query: 55   VHCQPRP*DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDST 234
            V CQP P DTMVKVGVNGFGRIG LVTRAA NSGK+DIVAIND FIDL+YMVYMFQYDST
Sbjct: 14   VQCQPHPGDTMVKVGVNGFGRIGHLVTRAALNSGKMDIVAINDTFIDLNYMVYMFQYDST 73

Query: 235  HGKFHGTVKAENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHL 414
            HGKFHGTVKAEN KLVINGK+I+IFQER+P NIKWGDAGA YVVES GVFTTMEKAGAHL
Sbjct: 74   HGKFHGTVKAENRKLVINGKSISIFQERNPYNIKWGDAGAEYVVESAGVFTTMEKAGAHL 133

Query: 415  KGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVE 594
            KGGAKRVIISA SA+APMFVMG+NHEKYDNSLKIVSNASCTTN LAPLAKVIH HFGIVE
Sbjct: 134  KGGAKRVIISASSAEAPMFVMGMNHEKYDNSLKIVSNASCTTNWLAPLAKVIHGHFGIVE 193

Query: 595  GLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMA 774
            GLMTTVH ITATQKTVDGPSGKLW D RGAAQNIIPASTGA KAVGKVIPELNGKLTGMA
Sbjct: 194  GLMTTVHIITATQKTVDGPSGKLWCDSRGAAQNIIPASTGATKAVGKVIPELNGKLTGMA 253

Query: 775  FRVPTPNVSVVDLTCRLEKP----AKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS 942
             RV          +C  + P     +YDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS
Sbjct: 254  QRV----------SCGSDLPPGESCQYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS 303

Query: 943  DTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            DTHSSTFD GAG+      VKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 304  DTHSSTFDIGAGM------VKLISWYDNEFGYSNRVVDLMVHMASKE 344


>ref|XP_852804.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver
            (GAPDH) [Canis familiaris].
          Length = 351

 Score =  560 bits (1442), Expect = e-159
 Identities = 283/335 (84%), Positives = 294/335 (87%)
 Frame = +1

Query: 79   DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTV 258
            +T+VKVGVN FGRIG LVT AAFNSGKVD VAINDPFI+L+Y+VYMFQYDSTH KFH TV
Sbjct: 18   ETIVKVGVNRFGRIGHLVTTAAFNSGKVDTVAINDPFINLNYIVYMFQYDSTHSKFHSTV 77

Query: 259  KAENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVI 438
            KA  G L   G   +    RDPANIKW DAGA YVVESTG+FTTMEKAGAHLKGGAKRVI
Sbjct: 78   KARIGNLSSMGSP-SPSSRRDPANIKWCDAGAEYVVESTGIFTTMEKAGAHLKGGAKRVI 136

Query: 439  ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 618
            I APSAD  MFVMGVNHEK DNS KIVSNASCTTNCLAPLAKVIHDHF IVEGLMTTVHA
Sbjct: 137  IFAPSADVAMFVMGVNHEKCDNSFKIVSNASCTTNCLAPLAKVIHDHFSIVEGLMTTVHA 196

Query: 619  ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 798
            ITATQKTVDGPSGKLW + RGAAQNIIPASTGA KAVGKVIPE+NGKLTGM F VPTPN+
Sbjct: 197  ITATQKTVDGPSGKLWHNSRGAAQNIIPASTGATKAVGKVIPEMNGKLTGMTFCVPTPNI 256

Query: 799  SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAG 978
            SVVDLTCRLEK AKYDDIKKVVKQASEGPLKG LGY EDQVVSC+FNSDT SSTFD  AG
Sbjct: 257  SVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGTLGYAEDQVVSCNFNSDTQSSTFDVKAG 316

Query: 979  IALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            IALNDHFVKLISWYDNEF YSN  VDLMVHMASKE
Sbjct: 317  IALNDHFVKLISWYDNEFSYSNWAVDLMVHMASKE 351


>ref|XP_852254.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
            familiaris].
          Length = 407

 Score =  556 bits (1432), Expect = e-158
 Identities = 294/396 (74%), Positives = 313/396 (79%), Gaps = 14/396 (3%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYM---VYMFQYDSTHGKFHGT 255
            MVKVGVNGFGRIGRLVTR +     VD VAINDPFIDL+Y+   VYMFQYDSTHGKFHGT
Sbjct: 1    MVKVGVNGFGRIGRLVTRPS----PVDTVAINDPFIDLNYLLRHVYMFQYDSTHGKFHGT 56

Query: 256  VKAENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRV 435
            VKAENGKLV+NGK+I+IFQERDPANIKWGDAGA YVVESTGVFTTMEKAG HLKGGAKRV
Sbjct: 57   VKAENGKLVLNGKSISIFQERDPANIKWGDAGADYVVESTGVFTTMEKAGPHLKGGAKRV 116

Query: 436  IISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVH 615
            IISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTT+H
Sbjct: 117  IISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTIH 176

Query: 616  AITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPN 795
            AITATQKTVD PSGKLWRDG+GAAQNII +STG  KAVGKVIPELNGKLTGMAFRVPTPN
Sbjct: 177  AITATQKTVDSPSGKLWRDGQGAAQNIILSSTGTTKAVGKVIPELNGKLTGMAFRVPTPN 236

Query: 796  VSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGA 975
            VSVVDLTCRLEK AKYDDIKKVVKQA EGPLKGILGYTEDQVVSCDFNSDTHSSTFD GA
Sbjct: 237  VSVVDLTCRLEKAAKYDDIKKVVKQALEGPLKGILGYTEDQVVSCDFNSDTHSSTFDTGA 296

Query: 976  GIA-----------LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE*EPLDHQPQQEHA 1122
            GIA           +  +      W+ +   +S R          +    LDHQPQQE  
Sbjct: 297  GIASMTTSSSSFPDMTMNLATATGWWTS---WSTR--------PPRSKSLLDHQPQQEQE 345

Query: 1123 RRKEALNCWGVTPQFDPPNNEASPDFSFIPNPRKKG 1230
              K       + P   P + E     +  P PR +G
Sbjct: 346  EEKGPQLLGSLCPNLIPQHTENLLTSNLHPRPRGRG 381


>ref|XP_854937.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
            familiaris].
          Length = 314

 Score =  548 bits (1411), Expect = e-156
 Identities = 275/332 (82%), Positives = 288/332 (86%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
            MVKVG NGFGRIG LVTRAAFNSGKVD+VAI+DPFIDL+YMVYM QYDSTHGKFH  VKA
Sbjct: 1    MVKVGANGFGRIGHLVTRAAFNSGKVDLVAIDDPFIDLNYMVYMLQYDSTHGKFHCMVKA 60

Query: 265  ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
            ENGK VINGK+I+IFQERDPANIKW D G                      GGAKRVIIS
Sbjct: 61   ENGKFVINGKSISIFQERDPANIKWDDTGVVL-------------------GGAKRVIIS 101

Query: 445  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
            APSADAPMFVMGVNHEKYDNS KIVSNASC TNCL  LAKVIHDHFGIVEGLMTT+HAIT
Sbjct: 102  APSADAPMFVMGVNHEKYDNSFKIVSNASCITNCLTSLAKVIHDHFGIVEGLMTTIHAIT 161

Query: 625  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
            ATQKTVDGPSGKLW D +GAAQNIIP S G  KAVG+VIPELNGKLTGMAF VPTPN+SV
Sbjct: 162  ATQKTVDGPSGKLWHDCQGAAQNIIPVSIGTTKAVGEVIPELNGKLTGMAFHVPTPNMSV 221

Query: 805  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
            VDLTCRLEK AKYDDIKKVVKQAS+GPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 222  VDLTCRLEKAAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 281

Query: 985  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASK 1080
            LNDHF KLISWYDNEF YSN+VVDL+V+MASK
Sbjct: 282  LNDHFAKLISWYDNEFVYSNQVVDLIVNMASK 313


>ref|XP_850054.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver
            (GAPDH) [Canis familiaris].
          Length = 321

 Score =  540 bits (1390), Expect = e-153
 Identities = 273/333 (81%), Positives = 289/333 (86%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
            M   GVNGFGRIGR+VTRAAFNSGKVDIVAINDPF DL+YMVYMFQYDSTHGKFH TVKA
Sbjct: 1    MKLAGVNGFGRIGRVVTRAAFNSGKVDIVAINDPFFDLNYMVYMFQYDSTHGKFHSTVKA 60

Query: 265  ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
            ENGKLVINGK+I+I+Q+RDP NIKWGDAGA YVVESTGVFTTMEKAGAHLKG  KRVIIS
Sbjct: 61   ENGKLVINGKSISIYQQRDPTNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGETKRVIIS 120

Query: 445  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
            A SADAPMFVMG+NHEKYDNSLKIVSNASCTTNCL  LAKV HDHF I+EG  T V AI 
Sbjct: 121  ASSADAPMFVMGMNHEKYDNSLKIVSNASCTTNCLTSLAKVTHDHFSIMEGFRTNVRAIA 180

Query: 625  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
            ATQKT+           RG  ++  PASTGAAKA GKVIPELNGK+TGMAF VPTPNVSV
Sbjct: 181  ATQKTL-----------RGCPEH-HPASTGAAKAEGKVIPELNGKVTGMAFHVPTPNVSV 228

Query: 805  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
            VDL C LEK AKYDDIKKVVKQASEGPLKGILGY EDQVVSC+FN+DTHSSTFD GAGI 
Sbjct: 229  VDLICHLEKAAKYDDIKKVVKQASEGPLKGILGYIEDQVVSCNFNNDTHSSTFDTGAGIV 288

Query: 985  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            LN+H VKLISWYDNEF YSN+VVDLMVHMASKE
Sbjct: 289  LNNHLVKLISWYDNEFSYSNQVVDLMVHMASKE 321


>ref|XP_853314.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
            familiaris].
          Length = 319

 Score =  536 bits (1380), Expect = e-152
 Identities = 275/334 (82%), Positives = 287/334 (85%), Gaps = 1/334 (0%)
 Frame = +1

Query: 85   MVKV-GVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVK 261
            MVKV GVNGFG IGRLVTRAAF+SGKVDIVAIND FIDL+YMVYMFQY STHGKFHGTVK
Sbjct: 1    MVKVVGVNGFGHIGRLVTRAAFDSGKVDIVAINDLFIDLNYMVYMFQYGSTHGKFHGTVK 60

Query: 262  AENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVII 441
            AENGKL I+GK+I+I QE DPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAK VII
Sbjct: 61   AENGKLFISGKSISILQEGDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKMVII 120

Query: 442  SAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAI 621
            SAPSADAPMFVMG+NH+KYDNSLKIVSNASCTT CL PLAKVIHDHF IVEGLMTTVHAI
Sbjct: 121  SAPSADAPMFVMGMNHKKYDNSLKIVSNASCTTKCLTPLAKVIHDHFAIVEGLMTTVHAI 180

Query: 622  TATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVS 801
            TATQ+TVD                  P      +  GKVIPELNGKLTGMAF VPTPNVS
Sbjct: 181  TATQRTVDEHH---------------PCFHWCHQGCGKVIPELNGKLTGMAFHVPTPNVS 225

Query: 802  VVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGI 981
            VVDL C LEK AKYDDIKKVVKQA EGP KGIL YTEDQVVSCDFNSDTHSST + GAGI
Sbjct: 226  VVDLNCCLEKAAKYDDIKKVVKQALEGPFKGILDYTEDQVVSCDFNSDTHSSTLNTGAGI 285

Query: 982  ALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            ALNDHF+KLISWYDNEFGYSNRVVDLMVH+ASKE
Sbjct: 286  ALNDHFIKLISWYDNEFGYSNRVVDLMVHVASKE 319


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,076,534
Number of extensions: 1448542
Number of successful extensions: 4986
Number of sequences better than 1.0e-05: 93
Number of HSP's gapped: 4915
Number of HSP's successfully gapped: 121
Length of query: 437
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 331
Effective length of database: 15,340,888
Effective search space: 5077833928
Effective search space used: 5077833928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000449
         (1313 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002037.2| glyceraldehyde-3-phosphate dehydrogenase [Homo ...   640   0.0  
Alignment   gi|NP_055179.1| glyceraldehyde-3-phosphate dehydrogenase, testi...   467   e-131

>ref|NP_002037.2| glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens].
          Length = 335

 Score =  640 bits (1651), Expect = 0.0
 Identities = 318/332 (95%), Positives = 323/332 (97%)
 Frame = +1

Query: 88   VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAE 267
            VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL+YMVYMFQYDSTHGKFHGTVKAE
Sbjct: 4    VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAE 63

Query: 268  NGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISA 447
            NGKLVING  ITIFQERDP+ IKWGDAGA YVVESTGVFTTMEKAGAHL+GGAKRVIISA
Sbjct: 64   NGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISA 123

Query: 448  PSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITA 627
            PSADAPMFVMGVNHEKYDNSLKI+SNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAITA
Sbjct: 124  PSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITA 183

Query: 628  TQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVV 807
            TQKTVDGPSGKLWRDGRGA QNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPT NVSVV
Sbjct: 184  TQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVV 243

Query: 808  DLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIAL 987
            DLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTE QVVS DFNSDTHSSTFDAGAGIAL
Sbjct: 244  DLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIAL 303

Query: 988  NDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            NDHFVKLISWYDNEFGYSNRVVDLM HMASKE
Sbjct: 304  NDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335


>ref|NP_055179.1| glyceraldehyde-3-phosphate dehydrogenase, testis-specific [Homo
            sapiens].
          Length = 408

 Score =  467 bits (1201), Expect = e-131
 Identities = 231/331 (69%), Positives = 273/331 (82%), Gaps = 1/331 (0%)
 Frame = +1

Query: 94   VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENG 273
            VG+NGFGRIGRLV RA    G V +VA+NDPFID  YMVYMF+YDSTHG++ G+V+  NG
Sbjct: 78   VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNG 136

Query: 274  KLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS 453
            +LV++   I+++Q ++P  I W   G+ YVVESTGV+ +++ A  H+  GA+RV+ISAPS
Sbjct: 137  QLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPS 196

Query: 454  ADAPMFVMGVNHEKYD-NSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITAT 630
             DAPMFVMGVN   Y+  S+ IVSNASCTTNCLAPLAKVIH+ FGIVEGLMTTVH+ TAT
Sbjct: 197  PDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYTAT 256

Query: 631  QKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVD 810
            QKTVDGPS K WRDGRGA QNIIPASTGAAKAV KVIPEL GKLTGMAFRVPTP+VSVVD
Sbjct: 257  QKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVD 316

Query: 811  LTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALN 990
            LTCRL +PA Y  IK+ VK A++GP+ GIL YTED+VVS DF  DTHSS FDA AGIALN
Sbjct: 317  LTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALN 376

Query: 991  DHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            D+FVKLISWYDNE+GYS+RVVDL+ +M S++
Sbjct: 377  DNFVKLISWYDNEYGYSHRVVDLLRYMFSRD 407


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,956,748
Number of extensions: 1419574
Number of successful extensions: 4599
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4590
Number of HSP's successfully gapped: 2
Length of query: 437
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 331
Effective length of database: 14,802,980
Effective search space: 4899786380
Effective search space used: 4899786380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000449
         (1313 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001479421.2| PREDICTED: glyceraldehyde-3-phosphate dehydr...   652   0.0  
Alignment   gi|XP_001476757.1| PREDICTED: glyceraldehyde-3-phosphate dehydr...   638   0.0  
Alignment   gi|NP_032110.1| glyceraldehyde-3-phosphate dehydrogenase [Mus m...   638   0.0  
Alignment   gi|XP_003085825.1| PREDICTED: glyceraldehyde-3-phosphate dehydr...   635   0.0  
Alignment   gi|XP_003086358.1| PREDICTED: glyceraldehyde-3-phosphate dehydr...   627   e-180
Alignment   gi|NP_032111.1| glyceraldehyde-3-phosphate dehydrogenase, testi...   467   e-131
Alignment   gi|XP_003085822.1| PREDICTED: glyceraldehyde-3-phosphate dehydr...   443   e-124
Alignment   gi|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus ...    88   2e-17
Alignment   gi|XP_921350.3| PREDICTED: hypothetical protein LOC216818 [Mus ...    88   2e-17

>ref|XP_001479421.2| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like isoform 1
            [Mus musculus].
          Length = 409

 Score =  652 bits (1682), Expect = 0.0
 Identities = 327/359 (91%), Positives = 339/359 (94%), Gaps = 10/359 (2%)
 Frame = +1

Query: 37   QTAVCS----------VHCQPRP*DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDP 186
            Q A+CS          V CQPRP D MVKVGVNGFGRIGRLVTRAA  SGKV+IVAINDP
Sbjct: 51   QLALCSSLFQRQPHLLVQCQPRPVDKMVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDP 110

Query: 187  FIDLHYMVYMFQYDSTHGKFHGTVKAENGKLVINGKAITIFQERDPANIKWGDAGATYVV 366
            FIDL+YMVYMFQYDSTHGKF+GTVKAENGKLVINGK ITIFQERDP NIKWG+AGA YVV
Sbjct: 111  FIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKPITIFQERDPTNIKWGEAGAEYVV 170

Query: 367  ESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNC 546
            ESTGVFTTMEKAGAHLKGGAK+VIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNC
Sbjct: 171  ESTGVFTTMEKAGAHLKGGAKKVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNC 230

Query: 547  LAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKA 726
            LAPLAKVIHD+FGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKA
Sbjct: 231  LAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKA 290

Query: 727  VGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY 906
            VGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY
Sbjct: 291  VGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY 350

Query: 907  TEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            TEDQVVSCDFNS++HSSTFDAGAGIALND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 351  TEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 409


>ref|XP_001476757.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like isoform 2
            [Mus musculus].
          Length = 333

 Score =  638 bits (1646), Expect = 0.0
 Identities = 317/333 (95%), Positives = 327/333 (98%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
            MVKVGVNGFGRIGRLVTRAA  SGKV+IVAINDPFIDL+YMVYMFQYDSTHGKF+GTVKA
Sbjct: 1    MVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA 60

Query: 265  ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
            ENGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61   ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120

Query: 445  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
            APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAIT
Sbjct: 121  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAIT 180

Query: 625  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
            ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240

Query: 805  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
            VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS++HSSTFDAGAGIA
Sbjct: 241  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIA 300

Query: 985  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            LND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 301  LNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333


>ref|NP_032110.1| glyceraldehyde-3-phosphate dehydrogenase [Mus musculus].
          Length = 333

 Score =  638 bits (1646), Expect = 0.0
 Identities = 317/333 (95%), Positives = 327/333 (98%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
            MVKVGVNGFGRIGRLVTRAA  SGKV+IVAINDPFIDL+YMVYMFQYDSTHGKF+GTVKA
Sbjct: 1    MVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA 60

Query: 265  ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
            ENGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61   ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120

Query: 445  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
            APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAIT
Sbjct: 121  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAIT 180

Query: 625  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
            ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240

Query: 805  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
            VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS++HSSTFDAGAGIA
Sbjct: 241  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIA 300

Query: 985  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            LND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 301  LNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333


>ref|XP_003085825.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Mus
            musculus].
          Length = 333

 Score =  635 bits (1638), Expect = 0.0
 Identities = 315/333 (94%), Positives = 325/333 (97%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
            MVKVGVNGFGRIGRLVTRAA  SGKV+IVAINDPFIDL+YMVYMFQYDSTHGKF+GTVKA
Sbjct: 1    MVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA 60

Query: 265  ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
            ENGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61   ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120

Query: 445  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
             PSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAIT
Sbjct: 121  TPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAIT 180

Query: 625  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
            ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGM FRVPTPNVSV
Sbjct: 181  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMTFRVPTPNVSV 240

Query: 805  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
            VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS++HSSTFDAGAGIA
Sbjct: 241  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIA 300

Query: 985  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            LND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 301  LNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333


>ref|XP_003086358.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Mus
            musculus].
          Length = 386

 Score =  627 bits (1617), Expect = e-180
 Identities = 313/343 (91%), Positives = 326/343 (95%)
 Frame = +1

Query: 55   VHCQPRP*DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDST 234
            V  QPRP D MVKVGVNGFGRIGRLVTRAA  SGKV++VAINDPFIDL+YMVYMFQYDST
Sbjct: 44   VQYQPRPVDKMVKVGVNGFGRIGRLVTRAAICSGKVEVVAINDPFIDLNYMVYMFQYDST 103

Query: 235  HGKFHGTVKAENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHL 414
            H KF+GTVKA+NGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKA AHL
Sbjct: 104  HDKFNGTVKAKNGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKARAHL 163

Query: 415  KGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVE 594
            KGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVE
Sbjct: 164  KGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVE 223

Query: 595  GLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMA 774
            G MTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMA
Sbjct: 224  GHMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMA 283

Query: 775  FRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHS 954
            F V TPNVSV+DLTC LEKPAKYDD KKVVKQASEGPLKGILGYTEDQVVSCDFNS++HS
Sbjct: 284  FHVSTPNVSVMDLTCCLEKPAKYDDTKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHS 343

Query: 955  STFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            STFDAGAGIALND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 344  STFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 386


>ref|NP_032111.1| glyceraldehyde-3-phosphate dehydrogenase, testis-specific [Mus
            musculus].
          Length = 438

 Score =  467 bits (1201), Expect = e-131
 Identities = 230/331 (69%), Positives = 270/331 (81%), Gaps = 1/331 (0%)
 Frame = +1

Query: 94   VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENG 273
            VG+NGFGRIGRLV R     G + +VA+NDPFID  YMVYMF+YDSTHG++ G V+ +NG
Sbjct: 108  VGINGFGRIGRLVLRVCMEKG-IRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGNVEHKNG 166

Query: 274  KLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS 453
            +LV++   I  +Q +DP  I W   G  YVVE TGV+ ++E A AH+  GA+RV+++APS
Sbjct: 167  QLVVDNLEINTYQCKDPKEIPWSSIGNPYVVECTGVYLSIEAASAHISSGARRVVVTAPS 226

Query: 454  ADAPMFVMGVNHEKYD-NSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITAT 630
             DAPMFVMGVN + Y+  S+ IVSNASCTTNCLAPLAKVIH++FGIVEGLMTTVH+ TAT
Sbjct: 227  PDAPMFVMGVNEKDYNPGSMTIVSNASCTTNCLAPLAKVIHENFGIVEGLMTTVHSYTAT 286

Query: 631  QKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVD 810
            QKTVDGPS K WR GRGA QNIIP+STGAAKAVGKVIPEL GKLTGMAFRVPTPNVSVVD
Sbjct: 287  QKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELKGKLTGMAFRVPTPNVSVVD 346

Query: 811  LTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALN 990
            LTCRL KPA Y  I + VK A++GPL GIL YTEDQVVS DFN + HSS FDA AGIALN
Sbjct: 347  LTCRLAKPASYSAITEAVKAAAKGPLAGILAYTEDQVVSTDFNGNPHSSIFDAKAGIALN 406

Query: 991  DHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            D+FVKL++WYDNE+GYSNRVVDL+ +M S+E
Sbjct: 407  DNFVKLVAWYDNEYGYSNRVVDLLRYMFSRE 437


>ref|XP_003085822.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Mus
           musculus].
          Length = 321

 Score =  443 bits (1140), Expect = e-124
 Identities = 222/236 (94%), Positives = 227/236 (96%)
 Frame = +1

Query: 85  MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
           MVKVGVNGFGRIGRLVTRAA  SGKV+IVAINDPFIDL+YMVYMFQYDSTHGKF+GTVKA
Sbjct: 1   MVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA 60

Query: 265 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
           ENGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61  ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120

Query: 445 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
           APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAIT 180

Query: 625 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP 792
           ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAF    P
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFPCSYP 236


>ref|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus musculus].
          Length = 239

 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 39/69 (56%), Positives = 56/69 (81%)
 Frame = -3

Query: 297 GLSIDDKLPVLRLDCAVELAVGGIILEHVDHVVEVNEGVIDGDNVHFARVKSSPGDQAPD 118
           G  IDDKLP+L LDCAVE A+GGIILEHVDH VEVNEGV+DG+N++FA+ ++   + +PD
Sbjct: 49  GFPIDDKLPILNLDCAVEFAMGGIILEHVDHAVEVNEGVVDGNNIYFAKCRT---EGSPD 105

Query: 117 AAKSVHSDL 91
            +++  +++
Sbjct: 106 CSQAADTNV 114



 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 42/57 (73%), Positives = 44/57 (77%)
 Frame = -1

Query: 440 MMTLLAPPFK*APAFSMVVKTPVDSTTYVAPASPHLMLAGSRSWKMVMAFPLMTSFP 270
           MMTLLAPPFK A A SMVVK PVDS TY APA+PH MLA SRSWKMVM FP+    P
Sbjct: 1   MMTLLAPPFKWALASSMVVKMPVDSITYSAPATPHSMLARSRSWKMVMGFPIDDKLP 57


>ref|XP_921350.3| PREDICTED: hypothetical protein LOC216818 [Mus musculus].
          Length = 238

 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 39/69 (56%), Positives = 56/69 (81%)
 Frame = -3

Query: 297 GLSIDDKLPVLRLDCAVELAVGGIILEHVDHVVEVNEGVIDGDNVHFARVKSSPGDQAPD 118
           G  IDDKLP+L LDCAVE A+GGIILEHVDH VEVNEGV+DG+N++FA+ ++   + +PD
Sbjct: 48  GFPIDDKLPILNLDCAVEFAMGGIILEHVDHAVEVNEGVVDGNNIYFAKCRT---EGSPD 104

Query: 117 AAKSVHSDL 91
            +++  +++
Sbjct: 105 CSQAADTNV 113



 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 41/56 (73%), Positives = 43/56 (76%)
 Frame = -1

Query: 437 MTLLAPPFK*APAFSMVVKTPVDSTTYVAPASPHLMLAGSRSWKMVMAFPLMTSFP 270
           MTLLAPPFK A A SMVVK PVDS TY APA+PH MLA SRSWKMVM FP+    P
Sbjct: 1   MTLLAPPFKWALASSMVVKMPVDSITYSAPATPHSMLARSRSWKMVMGFPIDDKLP 56


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,133,040
Number of extensions: 1180074
Number of successful extensions: 3856
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3842
Number of HSP's successfully gapped: 11
Length of query: 437
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 333
Effective length of database: 12,493,815
Effective search space: 4160440395
Effective search space used: 4160440395
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000449
         (1313 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001193288.1| glyceraldehyde-3-phosphate dehydrogenase [Su...   672   0.0  
Alignment   gi|XP_003127098.2| PREDICTED: glyceraldehyde-3-phosphate dehydr...   404   e-113
Alignment   gi|XP_003361616.1| PREDICTED: glyceraldehyde-3-phosphate dehydr...   237   9e-63
Alignment   gi|XP_003355919.1| PREDICTED: glyceraldehyde-3-phosphate dehydr...   188   5e-48

>ref|NP_001193288.1| glyceraldehyde-3-phosphate dehydrogenase [Sus scrofa].
          Length = 333

 Score =  672 bits (1734), Expect = 0.0
 Identities = 333/333 (100%), Positives = 333/333 (100%)
 Frame = +1

Query: 85   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 264
            MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA
Sbjct: 1    MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 60

Query: 265  ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 444
            ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61   ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120

Query: 445  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 624
            APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121  APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180

Query: 625  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 804
            ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181  ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240

Query: 805  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 984
            VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241  VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300

Query: 985  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1083
            LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 301  LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333


>ref|XP_003127098.2| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase,
           testis-specific-like [Sus scrofa].
          Length = 397

 Score =  404 bits (1039), Expect = e-113
 Identities = 196/288 (68%), Positives = 239/288 (82%), Gaps = 1/288 (0%)
 Frame = +1

Query: 94  VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENG 273
           VG+NGFGRIGRLV RA    G V +VA+NDPFID  YMVYMF+YDSTHG++ GTV+ +N 
Sbjct: 74  VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGTVEYKND 132

Query: 274 KLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS 453
           KLV++ + I +FQ + P +I W   G+ +VVE+TGV+ ++E+   HL+ GA+RV+I APS
Sbjct: 133 KLVVDTREINVFQCKQPKDIPWKSVGSPFVVEATGVYLSLEETSPHLEAGAQRVVICAPS 192

Query: 454 ADAPMFVMGVNHEKYD-NSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITAT 630
            DAPMFVMGVN + Y+  ++KIVSNASCTTNCLAPLAKVIH+ FGI+EGLMTTVH+ TAT
Sbjct: 193 PDAPMFVMGVNEKDYNPGTMKIVSNASCTTNCLAPLAKVIHERFGILEGLMTTVHSYTAT 252

Query: 631 QKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVD 810
           QKTVDGPS K WRDGRGA QNIIPASTGAAKAVGK+IP+L GKLTGMAFRVPTP+VSVVD
Sbjct: 253 QKTVDGPSKKAWRDGRGAHQNIIPASTGAAKAVGKIIPDLKGKLTGMAFRVPTPDVSVVD 312

Query: 811 LTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHS 954
           LTCRL +P +Y  IK+ +K+A++GP+ GIL YTED+VVS DF SDTHS
Sbjct: 313 LTCRLAQPTQYSAIKEAIKEAAKGPMAGILAYTEDEVVSTDFVSDTHS 360


>ref|XP_003361616.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like, partial
           [Sus scrofa].
          Length = 126

 Score =  237 bits (605), Expect = 9e-63
 Identities = 117/118 (99%), Positives = 117/118 (99%)
 Frame = +1

Query: 598 LMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAF 777
           L TTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAF
Sbjct: 9   LQTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAF 68

Query: 778 RVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH 951
           RVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH
Sbjct: 69  RVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH 126


>ref|XP_003355919.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase,
           testis-specific-like [Sus scrofa].
          Length = 252

 Score =  188 bits (478), Expect = 5e-48
 Identities = 100/163 (61%), Positives = 119/163 (73%), Gaps = 3/163 (1%)
 Frame = +1

Query: 475 MGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLM---TTVHAITATQKTVD 645
           +G NH    ++L + S    TT  L        +  G+   L    TTVH+ TATQKTVD
Sbjct: 83  LGRNHSP-PSTLTVHSPTWVTTVGLGKTNTGAWEQEGLTSALFFSKTTVHSYTATQKTVD 141

Query: 646 GPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRL 825
           GPS K WRDGRGA QNIIPASTGAAKAVGK+IP+L GKLTGMAFRVPTP+VSVVDLTCRL
Sbjct: 142 GPSKKAWRDGRGAHQNIIPASTGAAKAVGKIIPDLKGKLTGMAFRVPTPDVSVVDLTCRL 201

Query: 826 EKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHS 954
            +P +Y  IK+ +K+A++GP+ GIL YTED+VVS DF SDTHS
Sbjct: 202 AQPTQYSAIKEAIKEAAKGPMAGILAYTEDEVVSTDFVSDTHS 244


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,742,561
Number of extensions: 941209
Number of successful extensions: 2959
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2952
Number of HSP's successfully gapped: 4
Length of query: 437
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 335
Effective length of database: 8,804,438
Effective search space: 2949486730
Effective search space used: 2949486730
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000449
         (1313 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL894812.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   305   3e-80
Sscrofa_Chr05                                                         297   8e-78
gb|GL894823.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   232   4e-58
gb|GL892590.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   204   9e-50
gb|GL896384.1| Sus scrofa unplaced genomic scaffold chrU_scaffold73   174   8e-41
gb|GL896556.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   170   1e-39
Sscrofa_Chr02                                                         159   5e-36
gb|GL893763.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   123   3e-25
Sscrofa_ChrX                                                           84   2e-13
Sscrofa_Chr06                                                          84   2e-13

>gb|GL894812.1| Sus scrofa unplaced genomic scaffold chrU_scaffold344
          Length = 661

 Score =  305 bits (154), Expect = 3e-80
 Identities = 154/154 (100%)
 Strand = Plus / Minus

                                                                       
Query: 603 gaccacggtccatgccatcactgccacccagaagactgtggatggcccgtctgggaagct 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaccacggtccatgccatcactgccacccagaagactgtggatggcccgtctgggaagct 549

                                                                       
Query: 663 gtggcgtgatggccgaggggctgcccagaacatcatccctgcttctaccggcgctgccaa 722
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtggcgtgatggccgaggggctgcccagaacatcatccctgcttctaccggcgctgccaa 489

                                             
Query: 723 ggctgtgggcaaggtcatccctgagctcaacggg 756
           ||||||||||||||||||||||||||||||||||
Sbjct: 488 ggctgtgggcaaggtcatccctgagctcaacggg 455



 Score =  170 bits (86), Expect = 1e-39
 Identities = 86/86 (100%)
 Strand = Plus / Minus

                                                                       
Query: 835 gcaaaatatgatgacatcaagaaggtggtgaagcaggcgtccgagggccccctcaagggc 894
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gcaaaatatgatgacatcaagaaggtggtgaagcaggcgtccgagggccccctcaagggc 147

                                     
Query: 895 atcctgggctacactgaggaccaggt 920
           ||||||||||||||||||||||||||
Sbjct: 146 atcctgggctacactgaggaccaggt 121



 Score =  161 bits (81), Expect = 1e-36
 Identities = 81/81 (100%)
 Strand = Plus / Minus

                                                                       
Query: 755 ggaagctcactggcatggccttccgtgtccccacccccaacgtgtcggttgtggatctga 814
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggaagctcactggcatggccttccgtgtccccacccccaacgtgtcggttgtggatctga 310

                                
Query: 815 cctgccgcctggagaaacctg 835
           |||||||||||||||||||||
Sbjct: 309 cctgccgcctggagaaacctg 289



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 915 ccaggttgtgtcctgtgacttcaacagtgacactcactcttc 956
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  ccaggttgtgtcctgtgacttcaacagtgacactcactcttc 1


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  297 bits (150), Expect = 8e-78
 Identities = 212/226 (93%), Gaps = 5/226 (2%)
 Strand = Plus / Plus

                                                                            
Query: 1016     ggtacgacaatgaatttggctacagcaacagggtggtggacctcatggtccacatggcct 1075
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449237 ggtacgacaatgaatttggctacagcaacagggtggtggacctcatggtccacatggcct 66449296

                                                                            
Query: 1076     ccaaggagtaagagcccctggaccaccaaccccagcaagagcacgcgaggaggaaagagg 1135
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 66449297 ccaaggagtaagagcccctggaccaccaaccccagcaagagcacgcgaggaggagagagg 66449356

                                                                            
Query: 1136     ccctcaactgctggggagtcaca-ccccaattcgatcccccaa-acaacgaagcatctcc 1193
                |||||| |||||||||||||||| |||||| |||||||||||| ||| || |||||||||
Sbjct: 66449357 ccctcagctgctggggagtcacagccccaactcgatcccccaacacaccg-agcatctcc 66449415

                                                              
Query: 1194     tgactt-tagttt-catcccaaacccccgaaaaaagggaaggggct 1237
                ||||||  ||||| ||||||| ||||||| || ||||| |||||||
Sbjct: 66449416 tgacttccagtttccatcccagacccccggaagaaggggaggggct 66449461



 Score =  192 bits (97), Expect = 3e-46
 Identities = 103/105 (98%)
 Strand = Plus / Plus

                                                                            
Query: 915      ccaggttgtgtcctgtgacttcaacagtgacactcactcttctacctttgatgctggggc 974
                |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 66449019 ccaggttgtgtcctgtgacttcaacagtgacactcactcttccacttttgatgctggggc 66449078

                                                             
Query: 975      tggcattgccctcaacgaccacttcgtcaagctcatttcctggta 1019
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449079 tggcattgccctcaacgaccacttcgtcaagctcatttcctggta 66449123



 Score =  170 bits (86), Expect = 1e-39
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                            
Query: 835      gcaaaatatgatgacatcaagaaggtggtgaagcaggcgtccgagggccccctcaagggc 894
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66448855 gcaaaatatgatgacatcaagaaggtggtgaagcaggcgtccgagggccccctcaagggc 66448914

                                          
Query: 895      atcctgggctacactgaggaccaggt 920
                ||||||||||||||||||||||||||
Sbjct: 66448915 atcctgggctacactgaggaccaggt 66448940



 Score =  161 bits (81), Expect = 1e-36
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                            
Query: 755      ggaagctcactggcatggccttccgtgtccccacccccaacgtgtcggttgtggatctga 814
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66448692 ggaagctcactggcatggccttccgtgtccccacccccaacgtgtcggttgtggatctga 66448751

                                     
Query: 815      cctgccgcctggagaaacctg 835
                |||||||||||||||||||||
Sbjct: 66448752 cctgccgcctggagaaacctg 66448772



 Score =  147 bits (74), Expect = 2e-32
 Identities = 80/82 (97%)
 Strand = Plus / Plus

                                                                            
Query: 107      gatttggccgcatcgggcgcctggtcaccagggctgcttttaactctggcaaagtggaca 166
                |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 66448472 gatttggccgcatcgggcgcctggtcacccaggctgcttttaactctggcaaagtggaca 66448531

                                      
Query: 167      ttgtcgccatcaatgacccctt 188
                ||||||||||||||||||||||
Sbjct: 66448532 ttgtcgccatcaatgacccctt 66448553



 Score =  105 bits (53), Expect = 6e-20
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                     
Query: 14       gctctctgctcctccccgttcgacagacagccgtgtgttccgtgcattgccag 66
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66446331 gctctctgctcctccccgttcgacagacagccgtgtgttccgtgcattgccag 66446383



 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                            
Query: 64       cagccgcgtccctgagacacgatggtgaaggtcggagtgaacgg 107
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66446654 cagccgcgtccctgagacacgatggtgaaggtcggagtgaacgg 66446697



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                      
Query: 125      gcctggtcaccagggctgcttttaactctggcaaagtg 162
                ||||||||||||| ||| ||||||||||||||||||||
Sbjct: 88444900 gcctggtcaccagagctacttttaactctggcaaagtg 88444937


>gb|GL894823.1| Sus scrofa unplaced genomic scaffold chrU_scaffold345
          Length = 670

 Score =  232 bits (117), Expect = 4e-58
 Identities = 117/117 (100%)
 Strand = Plus / Minus

                                                                       
Query: 405 ggctcacttgaagggtggggccaagagggtcatcatctctgccccttctgccgatgcccc 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ggctcacttgaagggtggggccaagagggtcatcatctctgccccttctgccgatgcccc 86

                                                                    
Query: 465 catgtttgtgatgggcgtgaaccatgagaagtatgacaactccctcaagatcgtcag 521
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  catgtttgtgatgggcgtgaaccatgagaagtatgacaactccctcaagatcgtcag 29



 Score =  216 bits (109), Expect = 2e-53
 Identities = 109/109 (100%)
 Strand = Plus / Minus

                                                                       
Query: 207 ggtctacatgttccagtatgattccacccacggcaagttccacggcacagtcaaggcgga 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ggtctacatgttccagtatgattccacccacggcaagttccacggcacagtcaaggcgga 531

                                                            
Query: 267 gaacgggaagcttgtcatcaatggaaaggccatcaccatcttccaggag 315
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaacgggaagcttgtcatcaatggaaaggccatcaccatcttccaggag 482



 Score =  182 bits (92), Expect = 3e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                       
Query: 315 gcgagatcccgccaacatcaaatggggcgatgctggtgctacgtatgttgtggagtccac 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcgagatcccgccaacatcaaatggggcgatgctggtgctacgtatgttgtggagtccac 302

                                           
Query: 375 tggtgtcttcacgaccatggagaaggccgggg 406
           ||||||||||||||||||||||||||||||||
Sbjct: 301 tggtgtcttcacgaccatggagaaggccgggg 270


>gb|GL892590.1| Sus scrofa unplaced genomic scaffold chrU_scaffold144
          Length = 184

 Score =  204 bits (103), Expect = 9e-50
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                       
Query: 107 gatttggccgcatcgggcgcctggtcaccagggctgcttttaactctggcaaagtggaca 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gatttggccgcatcgggcgcctggtcaccagggctgcttttaactctggcaaagtggaca 65

                                                      
Query: 167 ttgtcgccatcaatgaccccttcattgacctccactacatggt 209
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ttgtcgccatcaatgaccccttcattgacctccactacatggt 22


>gb|GL896384.1| Sus scrofa unplaced genomic scaffold chrU_scaffold73
          Length = 130

 Score =  174 bits (88), Expect = 8e-41
 Identities = 88/88 (100%)
 Strand = Plus / Minus

                                                                        
Query: 932  acttcaacagtgacactcactcttctacctttgatgctggggctggcattgccctcaacg 991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130  acttcaacagtgacactcactcttctacctttgatgctggggctggcattgccctcaacg 71

                                        
Query: 992  accacttcgtcaagctcatttcctggta 1019
            ||||||||||||||||||||||||||||
Sbjct: 70   accacttcgtcaagctcatttcctggta 43


>gb|GL896556.1| Sus scrofa unplaced genomic scaffold chrU_scaffold885
          Length = 1756

 Score =  170 bits (86), Expect = 1e-39
 Identities = 86/86 (100%)
 Strand = Plus / Minus

                                                                       
Query: 518 tcagcaatgcctcctgcaccaccaactgcttggcacccctggccaaggtcatccatgacc 577
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcagcaatgcctcctgcaccaccaactgcttggcacccctggccaaggtcatccatgacc 207

                                     
Query: 578 acttcggcatcgtggagggactcatg 603
           ||||||||||||||||||||||||||
Sbjct: 206 acttcggcatcgtggagggactcatg 181



 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                             
Query: 14  gctctctgctcctccccgttcgacagacagccgtgtgttccgtgcattgc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gctctctgctcctccccgttcgacagacagccgtgtgttccgtgcattgc 681


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  159 bits (80), Expect = 5e-36
 Identities = 310/385 (80%), Gaps = 15/385 (3%)
 Strand = Plus / Plus

                                                                            
Query: 358      tatgttgtggagtccactggtgtcttcacgaccatggagaaggccggggctcacttgaag 417
                |||||| |||||||||||| ||||||||| | | |||||||||  | ||||| || ||| 
Sbjct: 33948375 tatgttttggagtccactgttgtcttcaccaacttggagaaggttgaggctccctggaaa 33948434

                                                                            
Query: 418      ggtggggccaagagggtcatcatc---tctgccccttctgccgatgcccccatgtttgtg 474
                | ||| ||  | ||||||||||||   |||||||||||||| || |||||||||||||  
Sbjct: 33948435 gatggagcagaaagggtcatcatcatctctgccccttctgctgaggcccccatgtttg-- 33948492

                                                                            
Query: 475      atgggcgtgaaccatgagaagtatgacaactccctcaagatcgtcagcaatgcctcctgc 534
                   ||| | || |||||||||||||||||  ||||| ||||  | || ||||| || | |
Sbjct: 33948493 ---ggcataaatcatgagaagtatgacaataccctccagattattagtaatgcttcttcc 33948549

                                                                            
Query: 535      accaccaactgcttggcacccctggccaaggtcatccatgaccacttcggcatcgtggag 594
                ||  ||| || |||||| || ||||||||||||||||||||| |||| ||||| ||    
Sbjct: 33948550 actgccacctacttggcccctctggccaaggtcatccatgacaactttggcatggt---- 33948605

                                                                            
Query: 595      ggactcatgaccacggtccatgccatcactgccacccagaagactgtggatggcccgtct 654
                  ||||| |||||| ||| ||||||||||||||||| ||||||  |  |||||  | |||
Sbjct: 33948606 --actcaggaccacagtctatgccatcactgccacctagaagatcgcagatggttcttct 33948663

                                                                            
Query: 655      gggaagctgtggcgtgatggccgaggggctgcccagaacatcatccctgcttctaccggc 714
                 |||||||||||| | ||||| | ||||||||||||||  ||||||||||||||| || |
Sbjct: 33948664 aggaagctgtggcataatggctgtggggctgcccagaagctcatccctgcttcta-cgac 33948722

                                         
Query: 715      gctgccaaggctgtgggcaaggtca 739
                 ||||||||||||||||||||||||
Sbjct: 33948723 actgccaaggctgtgggcaaggtca 33948747



 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                            
Query: 961      tttgatgctggggctggcattgccctcaacgaccacttcgtcaagctcatttcctggtac 1020
                ||||||||||| ||||||||||||||||  ||| ||||  ||| | |||||||||| |  
Sbjct: 33948965 tttgatgctggagctggcattgccctcagtgactactttttcaggttcatttcctgctgt 33949024

                                       
Query: 1021     gacaatgaatttggctacagcaa 1043
                |||||||| ||||||||||||||
Sbjct: 33949025 gacaatgagtttggctacagcaa 33949047


>gb|GL893763.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2496
          Length = 115851

 Score =  123 bits (62), Expect = 3e-25
 Identities = 108/122 (88%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                         
Query: 982   gccctcaacgaccacttcgtcaagctcatttcctggtacgacaatgaatttggctacagc 1041
             |||||||| | |||||| |||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 85577 gccctcaatgcccactttgtcaagctcatttcctagtatgaca-tgaatttggctacagc 85519

                                                                         
Query: 1042  aacagggtggtggacctcatggtccacatggcctccaaggagtaagagcccctggaccac 1101
             ||||||||| ||||| |||| || ||||||||| | |||||||||||||  |||||||||
Sbjct: 85518 aacagggtgatggacttcattgttcacatggccacaaaggagtaagagctgctggaccac 85459

               
Query: 1102  ca 1103
             ||
Sbjct: 85458 ca 85457


>Sscrofa_ChrX 
||          Length = 144288218

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                             
Query: 320       atcccgccaacatcaaatggggcgatgctggtgctacgtatgttgtggagtccactggtg 379
                 |||| ||||||||||||| ||| | ||||| ||||  ||||||||| |||||||||||||
Sbjct: 107701676 atcctgccaacatcaaatagggtgctgctgctgctgagtatgttgtagagtccactggtg 107701617

                                                       
Query: 380       tcttcacgaccatggagaaggccggggctcacttgaag 417
                 |||| || ||| |||||| ||| ||||||||| |||||
Sbjct: 107701616 tctttactaccttggagatggctggggctcacatgaag 107701579



 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 116/141 (82%)
 Strand = Plus / Minus

                                                                             
Query: 897       cctgggctacactgaggaccaggttgtgtcctgtgacttcaacagtgacactcactcttc 956
                 ||||| ||||||||||||||| ||  | |||||||  || | ||||||| | |||||| |
Sbjct: 107701143 cctggactacactgaggaccaagtcttctcctgtggatttagcagtgacccccactctcc 107701084

                                                                             
Query: 957       tacctttgatgctggggctggcattgccctcaacgaccacttcgtcaagctcatttcctg 1016
                 | |||| | |||   |||||||||| || ||||| || |||| ||||||||||||| |||
Sbjct: 107701083 ttccttagttgcgaaggctggcattaccatcaacaactactttgtcaagctcatttactg 107701024

                                      
Query: 1017      gtacgacaatgaatttggcta 1037
                 ||| |||||||||||||||||
Sbjct: 107701023 gtatgacaatgaatttggcta 107701003


>Sscrofa_Chr06 
||          Length = 157765593

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                          
Query: 518      tcagcaatgcctcctgcaccaccaactgcttggcacccctggccaaggtcatccatga 575
                ||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 40369609 tcagcaacgcctcctgcaccaccaactgcctggcccccctcgccaaggtcatccatga 40369552



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 687      ccagaacatcatccctgcttctaccggcgctgccaaggctgtgggcaaggtcatccctga 746
                |||||||||||||||||| || || || ||||||||||||||||||||  ||||||| ||
Sbjct: 40369136 ccagaacatcatccctgcctccacaggggctgccaaggctgtgggcaaaatcatcccaga 40369077

                      
Query: 747      gctcaa 752
                 |||||
Sbjct: 40369076 cctcaa 40369071


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,393,279
Number of extensions: 181
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 29
Length of query: 1313
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1292
Effective length of database: 2,808,413,156
Effective search space: 3628469797552
Effective search space used: 3628469797552
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)