Animal-Genome cDNA 20110601C-000466


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000466
         (696 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_786977.1| NADH dehydrogenase [ubiquinone] 1 beta subcompl...   377   e-105

>ref|NP_786977.1| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Bos
           taurus].
          Length = 179

 Score =  377 bits (967), Expect = e-105
 Identities = 168/179 (93%), Positives = 175/179 (97%)
 Frame = +2

Query: 50  MAFSAPAAYLTHQQKVLRLYKRALRHLESWCVHRDKYRYFACLMRARFDEHKNEKDMVKA 229
           MAF +  AYLTHQQKVLRLYKRALRHLESWC+HRDKYRYFACL+RARFDEHKNEKDMVKA
Sbjct: 1   MAFLSSGAYLTHQQKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKDMVKA 60

Query: 230 TQLLRQAEEEFWYGQHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFA 409
           TQLLR+AEEEFW+GQHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFA
Sbjct: 61  TQLLREAEEEFWHGQHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFA 120

Query: 410 KREQWKRLRRESWEREVKQLQEETPPGGPRTEALPPARKEGDLPPLWWHIVTRPRERPM 586
           KREQWK+LRRESWEREVKQLQEETP GGPRTEALPPARK+GDLPPLWWHIVTRPRERPM
Sbjct: 121 KREQWKKLRRESWEREVKQLQEETPVGGPRTEALPPARKQGDLPPLWWHIVTRPRERPM 179


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,313,837
Number of extensions: 701140
Number of successful extensions: 3127
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3111
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 133
Effective length of database: 14,405,662
Effective search space: 1915953046
Effective search space used: 1915953046
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000466
         (696 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_532326.1| PREDICTED: similar to NADH dehydrogenase (ubiqu...   370   e-103

>ref|XP_532326.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta
           subcomplex, 9, 22kDa [Canis familiaris].
          Length = 179

 Score =  370 bits (950), Expect = e-103
 Identities = 167/179 (93%), Positives = 172/179 (96%)
 Frame = +2

Query: 50  MAFSAPAAYLTHQQKVLRLYKRALRHLESWCVHRDKYRYFACLMRARFDEHKNEKDMVKA 229
           MAF  P AYLTHQQKVLRLYKRALRHLES+CVHRDKYRYFACLMRARF+EHKNEKDMVKA
Sbjct: 1   MAFCGPGAYLTHQQKVLRLYKRALRHLESYCVHRDKYRYFACLMRARFEEHKNEKDMVKA 60

Query: 230 TQLLRQAEEEFWYGQHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFA 409
           TQLLR AEEEFW+ QHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFA
Sbjct: 61  TQLLRAAEEEFWHNQHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFA 120

Query: 410 KREQWKRLRRESWEREVKQLQEETPPGGPRTEALPPARKEGDLPPLWWHIVTRPRERPM 586
           KREQWK+L+RESWEREVKQLQEETP GGP TEALPPARKEGDLPPLWWHIVTRPRERPM
Sbjct: 121 KREQWKKLQRESWEREVKQLQEETPHGGPTTEALPPARKEGDLPPLWWHIVTRPRERPM 179


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,380,526
Number of extensions: 709967
Number of successful extensions: 3265
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3263
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 133
Effective length of database: 15,574,240
Effective search space: 2071373920
Effective search space used: 2071373920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000466
         (696 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004996.1| NADH dehydrogenase [ubiquinone] 1 beta subcompl...   366   e-102

>ref|NP_004996.1| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Homo
           sapiens].
          Length = 179

 Score =  366 bits (940), Expect = e-102
 Identities = 164/179 (91%), Positives = 171/179 (95%)
 Frame = +2

Query: 50  MAFSAPAAYLTHQQKVLRLYKRALRHLESWCVHRDKYRYFACLMRARFDEHKNEKDMVKA 229
           MAF A   YLTHQQKVLRLYKRALRHLESWCV RDKYRYFACLMRARF+EHKNEKDM KA
Sbjct: 1   MAFLASGPYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKA 60

Query: 230 TQLLRQAEEEFWYGQHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFA 409
           TQLL++AEEEFWY QHPQPYIFP+SPGGTSYERY+CYKVPEWCLDDWHPSEKAMYPDYFA
Sbjct: 61  TQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFA 120

Query: 410 KREQWKRLRRESWEREVKQLQEETPPGGPRTEALPPARKEGDLPPLWWHIVTRPRERPM 586
           KREQWK+LRRESWEREVKQLQEETPPGGP TEALPPARKEGDLPPLWW+IVTRPRERPM
Sbjct: 121 KREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM 179


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,830,756
Number of extensions: 696450
Number of successful extensions: 2937
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2924
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 133
Effective length of database: 15,033,728
Effective search space: 1999485824
Effective search space used: 1999485824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000466
         (696 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_075661.1| NADH dehydrogenase [ubiquinone] 1 beta subcompl...   353   5e-98

>ref|NP_075661.1| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Mus
           musculus].
          Length = 179

 Score =  353 bits (907), Expect = 5e-98
 Identities = 157/178 (88%), Positives = 168/178 (94%)
 Frame = +2

Query: 50  MAFSAPAAYLTHQQKVLRLYKRALRHLESWCVHRDKYRYFACLMRARFDEHKNEKDMVKA 229
           MAF AP AYLTHQQKVLRLYKRALRHLESWC+HRDKYRYFACLMRARF+EHKNEKDM++A
Sbjct: 1   MAFCAPPAYLTHQQKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKDMMRA 60

Query: 230 TQLLRQAEEEFWYGQHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFA 409
           TQLLR+AEEEFW  QHPQPYIFP+SPGGTS+ERYECYKVPEWCLD WHPSEKAMYPDYF+
Sbjct: 61  TQLLREAEEEFWQNQHPQPYIFPDSPGGTSFERYECYKVPEWCLDYWHPSEKAMYPDYFS 120

Query: 410 KREQWKRLRRESWEREVKQLQEETPPGGPRTEALPPARKEGDLPPLWWHIVTRPRERP 583
           KREQWK+LR ESW+REVKQLQEET P G  TEALPPAR+EGDLPPLWWHIVTRPRERP
Sbjct: 121 KREQWKKLRMESWDREVKQLQEETSPDGIMTEALPPARREGDLPPLWWHIVTRPRERP 178


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,821,565
Number of extensions: 582156
Number of successful extensions: 2359
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2356
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 134
Effective length of database: 12,674,031
Effective search space: 1698320154
Effective search space used: 1698320154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000466
         (696 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001927839.3| PREDICTED: NADH dehydrogenase [ubiquinone] 1...   395   e-110

>ref|XP_001927839.3| PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex
           subunit 9 [Sus scrofa].
          Length = 179

 Score =  395 bits (1015), Expect = e-110
 Identities = 179/179 (100%), Positives = 179/179 (100%)
 Frame = +2

Query: 50  MAFSAPAAYLTHQQKVLRLYKRALRHLESWCVHRDKYRYFACLMRARFDEHKNEKDMVKA 229
           MAFSAPAAYLTHQQKVLRLYKRALRHLESWCVHRDKYRYFACLMRARFDEHKNEKDMVKA
Sbjct: 1   MAFSAPAAYLTHQQKVLRLYKRALRHLESWCVHRDKYRYFACLMRARFDEHKNEKDMVKA 60

Query: 230 TQLLRQAEEEFWYGQHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFA 409
           TQLLRQAEEEFWYGQHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFA
Sbjct: 61  TQLLRQAEEEFWYGQHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFA 120

Query: 410 KREQWKRLRRESWEREVKQLQEETPPGGPRTEALPPARKEGDLPPLWWHIVTRPRERPM 586
           KREQWKRLRRESWEREVKQLQEETPPGGPRTEALPPARKEGDLPPLWWHIVTRPRERPM
Sbjct: 121 KREQWKRLRRESWEREVKQLQEETPPGGPRTEALPPARKEGDLPPLWWHIVTRPRERPM 179


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,494,349
Number of extensions: 472462
Number of successful extensions: 1917
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1909
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 136
Effective length of database: 8,953,820
Effective search space: 1217719520
Effective search space used: 1217719520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000466
         (696 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                         430   e-118
Sscrofa_Chr07                                                          94   1e-16

>Sscrofa_Chr04 
||          Length = 143465943

 Score =  430 bits (217), Expect = e-118
 Identities = 217/217 (100%)
 Strand = Plus / Minus

                                                                            
Query: 456      aggttaagcagctgcaggaggaaaccccacctggcggtcccagaactgaagctttgcctc 515
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15762075 aggttaagcagctgcaggaggaaaccccacctggcggtcccagaactgaagctttgcctc 15762016

                                                                            
Query: 516      cagcccgaaaggaaggcgatttgcccccactgtggtggcatattgtgaccaggccccgag 575
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15762015 cagcccgaaaggaaggcgatttgcccccactgtggtggcatattgtgaccaggccccgag 15761956

                                                                            
Query: 576      aacggcccatgtaggggaagatgcctcaccagtcccacgtgcaagtgaaataaattatag 635
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15761955 aacggcccatgtaggggaagatgcctcaccagtcccacgtgcaagtgaaataaattatag 15761896

                                                     
Query: 636      gacatacgcttgccctaataaagtaactcaatatggt 672
                |||||||||||||||||||||||||||||||||||||
Sbjct: 15761895 gacatacgcttgccctaataaagtaactcaatatggt 15761859



 Score =  391 bits (197), Expect = e-106
 Identities = 197/197 (100%)
 Strand = Plus / Minus

                                                                            
Query: 149      agggacaaataccggtactttgcttgtttgatgagagcccgatttgatgaacacaagaat 208
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15766855 agggacaaataccggtactttgcttgtttgatgagagcccgatttgatgaacacaagaat 15766796

                                                                            
Query: 209      gaaaaggatatggtgaaggccacccagctgctgaggcaggccgaggaggaattctggtac 268
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15766795 gaaaaggatatggtgaaggccacccagctgctgaggcaggccgaggaggaattctggtac 15766736

                                                                            
Query: 269      ggtcagcaccctcagccatacatcttccccgagtctcctgggggcacctcctacgagaga 328
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15766735 ggtcagcaccctcagccatacatcttccccgagtctcctgggggcacctcctacgagaga 15766676

                                 
Query: 329      tacgagtgttacaaggt 345
                |||||||||||||||||
Sbjct: 15766675 tacgagtgttacaaggt 15766659



 Score =  287 bits (145), Expect = 4e-75
 Identities = 145/145 (100%)
 Strand = Plus / Minus

                                                                            
Query: 7        ttttccggcagcgcccgcggccgctgaaggtgagcgggccgtcatggctttctcggcgcc 66
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15769823 ttttccggcagcgcccgcggccgctgaaggtgagcgggccgtcatggctttctcggcgcc 15769764

                                                                            
Query: 67       ggcggcctacctgacccaccagcagaaggtgctgcggctttataagcgggcgctgcgcca 126
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15769763 ggcggcctacctgacccaccagcagaaggtgctgcggctttataagcgggcgctgcgcca 15769704

                                         
Query: 127      cctggagtcgtggtgcgtccacagg 151
                |||||||||||||||||||||||||
Sbjct: 15769703 cctggagtcgtggtgcgtccacagg 15769679



 Score =  234 bits (118), Expect = 5e-59
 Identities = 118/118 (100%)
 Strand = Plus / Minus

                                                                            
Query: 342      aggttcctgagtggtgcttagatgactggcatccttctgagaaagccatgtatcctgatt 401
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15765544 aggttcctgagtggtgcttagatgactggcatccttctgagaaagccatgtatcctgatt 15765485

                                                                          
Query: 402      actttgccaagagagagcagtggaagagacttcggagagaaagctgggagcgagaggt 459
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15765484 actttgccaagagagagcagtggaagagacttcggagagaaagctgggagcgagaggt 15765427


>Sscrofa_Chr07 
||          Length = 134764511

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 287/364 (78%), Gaps = 6/364 (1%)
 Strand = Plus / Plus

                                                                            
Query: 70       ggcctacctgacccaccagcagaaggtgctgcggctttataagcgggcgctgcgccacct 129
                |||||||||||| ||||||||||||| | ||| ||||||| ||| || |||| |||||||
Sbjct: 27022883 ggcctacctgactcaccagcagaaggcgttgcagctttattagcaggtgctgggccacct 27022942

                                                                            
Query: 130      ggagtcgtggtgcgtccacagggacaaataccggtactttgcttgtttgatgagagcccg 189
                 |||| || |||| ||||| |||||| |||  ||  | || |||||||||| ||||||| 
Sbjct: 27022943 tgagttgtagtgcatccacggggacagatattggccccttacttgtttgataagagccct 27023002

                                                                            
Query: 190      atttgatgaacacaagaatgaaaaggatatggtgaaggccacccagctgctgaggcaggc 249
                 ||||| ||    ||||||| ||||||| |||| | ||| || |||||||||||| ||||
Sbjct: 27023003 gtttgaagactgtaagaatg-aaaggatttggtaagggctactcagctgctgagggaggc 27023061

                                                                            
Query: 250      cgaggagg----aattctggtacggtcagcaccctcagccatacatcttccccgagtctc 305
                 ||||| |    |||||||  ||  |||||| || ||||||   | ||||||  | ||| 
Sbjct: 27023062 agaggaagaattaattctgccacaatcagcatccacagccactgaccttccctaattctt 27023121

                                                                            
Query: 306      ctgggggcacctcctacgagagatacgagtgttacaaggttcc-tgagtggtgcttagat 364
                 ||||| |||||| || ||||| |  ||||||||||| ||||| || ||||| |||||||
Sbjct: 27023122 gtggggacacctcttaggagagctgtgagtgttacaaagttccttgtgtggtacttagat 27023181

                                                                            
Query: 365      gactggcatccttctgagaaagccatgtatcctgattactttgccaagagagagcagtgg 424
                |||   |||||||| ||||| |  ||||||||| ||| ||||  ||||||||||||||||
Sbjct: 27023182 gaccaacatccttccgagaaggtgatgtatcctaatttctttatcaagagagagcagtgg 27023241

                    
Query: 425      aaga 428
                ||||
Sbjct: 27023242 aaga 27023245


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,038,083
Number of extensions: 350
Number of successful extensions: 350
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 6
Length of query: 696
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 675
Effective length of database: 2,808,413,156
Effective search space: 1895678880300
Effective search space used: 1895678880300
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)