Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000474
(976 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070510.1| brain protein 44-like protein [Bos taurus]. 227 1e-59
Alignment gi|NP_001069277.1| brain protein 44-like protein 2 [Bos taurus]. 144 2e-34
Alignment gi|NP_001180050.1| brain protein 44 [Bos taurus]. 49 5e-06
Alignment gi|XP_002685868.1| PREDICTED: brain protein 44 isoform 4 [Bos t... 49 5e-06
Alignment gi|XP_002685867.1| PREDICTED: brain protein 44 isoform 3 [Bos t... 49 5e-06
Alignment gi|XP_002685866.1| PREDICTED: brain protein 44 isoform 2 [Bos t... 49 5e-06
Alignment gi|XP_002685865.1| PREDICTED: brain protein 44 isoform 1 [Bos t... 49 5e-06
Alignment gi|XP_001788182.1| PREDICTED: brain protein 44 isoform 1 [Bos t... 49 5e-06
Alignment gi|XP_002703817.1| PREDICTED: brain protein 44 [Bos taurus]. 49 5e-06
Alignment gi|XP_002703816.1| PREDICTED: brain protein 44 [Bos taurus]. 49 5e-06
>ref|NP_001070510.1| brain protein 44-like protein [Bos taurus].
Length = 109
Score = 227 bits (579), Expect = 1e-59
Identities = 109/109 (100%), Positives = 109/109 (100%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60
Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA
Sbjct: 61 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 109
>ref|NP_001069277.1| brain protein 44-like protein 2 [Bos taurus].
Length = 181
Score = 144 bits (362), Expect = 2e-34
Identities = 67/98 (68%), Positives = 79/98 (80%)
Frame = +3
Query: 159 ALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYS 338
AL RKA + V++K+FRDYL STHFWGPVANWGLP+AA DM+ SP+IISGRMT AL YS
Sbjct: 6 ALCRKAMETVKTKEFRDYLASTHFWGPVANWGLPLAAFRDMRASPDIISGRMTTALIFYS 65
Query: 339 LTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRH 452
+ FMRFAY+VQPRN LL ACH TN VAQ +Q GR + +
Sbjct: 66 MAFMRFAYRVQPRNLLLMACHGTNIVAQSMQAGRYLNY 103
>ref|NP_001180050.1| brain protein 44 [Bos taurus].
Length = 127
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125
>ref|XP_002685868.1| PREDICTED: brain protein 44 isoform 4 [Bos taurus].
Length = 127
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125
>ref|XP_002685867.1| PREDICTED: brain protein 44 isoform 3 [Bos taurus].
Length = 127
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125
>ref|XP_002685866.1| PREDICTED: brain protein 44 isoform 2 [Bos taurus].
Length = 127
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125
>ref|XP_002685865.1| PREDICTED: brain protein 44 isoform 1 [Bos taurus].
Length = 127
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125
>ref|XP_001788182.1| PREDICTED: brain protein 44 isoform 1 [Bos taurus].
Length = 127
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125
>ref|XP_002703817.1| PREDICTED: brain protein 44 [Bos taurus].
Length = 127
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125
>ref|XP_002703816.1| PREDICTED: brain protein 44 [Bos taurus].
Length = 127
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,717,757
Number of extensions: 665679
Number of successful extensions: 1943
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1943
Number of HSP's successfully gapped: 10
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000474
(976 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863111.1| PREDICTED: similar to Brain protein 44-like pro... 224 7e-59
Alignment gi|XP_863085.1| PREDICTED: similar to Brain protein 44-like pro... 224 7e-59
Alignment gi|XP_851085.1| PREDICTED: similar to Brain protein 44-like pro... 224 7e-59
Alignment gi|XP_537999.1| PREDICTED: similar to Brain protein 44-like pro... 138 7e-33
Alignment gi|XP_863032.1| PREDICTED: similar to brain protein 44-like iso... 49 7e-06
>ref|XP_863111.1| PREDICTED: similar to Brain protein 44-like protein isoform 5
[Canis familiaris].
Length = 109
Score = 224 bits (572), Expect = 7e-59
Identities = 107/109 (98%), Positives = 108/109 (99%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
MAGALVRK ADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1 MAGALVRKTADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60
Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLI+HEMSKKASA
Sbjct: 61 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIKHEMSKKASA 109
>ref|XP_863085.1| PREDICTED: similar to Brain protein 44-like protein isoform 4
[Canis familiaris].
Length = 109
Score = 224 bits (572), Expect = 7e-59
Identities = 107/109 (98%), Positives = 108/109 (99%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
MAGALVRK ADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1 MAGALVRKTADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60
Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLI+HEMSKKASA
Sbjct: 61 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIKHEMSKKASA 109
>ref|XP_851085.1| PREDICTED: similar to Brain protein 44-like protein isoform 2
[Canis familiaris].
Length = 109
Score = 224 bits (572), Expect = 7e-59
Identities = 107/109 (98%), Positives = 108/109 (99%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
MAGALVRK ADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1 MAGALVRKTADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60
Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLI+HEMSKKASA
Sbjct: 61 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIKHEMSKKASA 109
>ref|XP_537999.1| PREDICTED: similar to Brain protein 44-like protein [Canis
familiaris].
Length = 123
Score = 138 bits (348), Expect = 7e-33
Identities = 64/109 (58%), Positives = 81/109 (74%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
M L ++A DY+++K+FRDY+ STHFWGP+ANWGLP+AAI DM SP IISG MT AL
Sbjct: 3 MVAGLWQRARDYMKTKEFRDYVTSTHFWGPLANWGLPLAAIKDMNASPTIISGPMTTALI 62
Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
YS+ FMRFAY+VQPRN LL ACH+TN V Q +Q R + H+ ++A
Sbjct: 63 FYSMAFMRFAYRVQPRNLLLLACHSTNVVVQSVQVSRYLIHQYGGDSAA 111
>ref|XP_863032.1| PREDICTED: similar to brain protein 44-like isoform 3 [Canis
familiaris].
Length = 53
Score = 48.9 bits (115), Expect = 7e-06
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMS 221
MAGALVRK ADYVRSKDFRDYLMS
Sbjct: 1 MAGALVRKTADYVRSKDFRDYLMS 24
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,792,170
Number of extensions: 662730
Number of successful extensions: 1962
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1962
Number of HSP's successfully gapped: 5
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000474
(976 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057182.1| brain protein 44-like protein [Homo sapiens]. 223 3e-58
Alignment gi|NP_001182451.1| brain protein 44-like protein 2 [Homo sapien... 129 3e-30
Alignment gi|NP_056230.1| brain protein 44 [Homo sapiens]. 49 5e-06
Alignment gi|NP_001137146.1| brain protein 44 [Homo sapiens]. 49 5e-06
>ref|NP_057182.1| brain protein 44-like protein [Homo sapiens].
Length = 109
Score = 223 bits (567), Expect = 3e-58
Identities = 106/109 (97%), Positives = 108/109 (99%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60
Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLI+HEM+K ASA
Sbjct: 61 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIKHEMTKTASA 109
>ref|NP_001182451.1| brain protein 44-like protein 2 [Homo sapiens].
Length = 136
Score = 129 bits (325), Expect = 3e-30
Identities = 61/95 (64%), Positives = 71/95 (74%)
Frame = +3
Query: 162 LVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSL 341
L RK D +SK+FR+Y+ STHFWGP +WGLP+AA DMK SPEIISGRMT AL YS
Sbjct: 7 LWRKMRDNFQSKEFREYVSSTHFWGPAFSWGLPLAAFKDMKASPEIISGRMTTALILYSA 66
Query: 342 TFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLI 446
FMRFAY+VQPRN LL ACH TN +AQ +Q R +
Sbjct: 67 IFMRFAYRVQPRNLLLMACHCTNVMAQSVQASRYL 101
>ref|NP_056230.1| brain protein 44 [Homo sapiens].
Length = 127
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGAAGASQLFRIWRYNQELKAKA 125
>ref|NP_001137146.1| brain protein 44 [Homo sapiens].
Length = 127
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGAAGASQLFRIWRYNQELKAKA 125
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,369,998
Number of extensions: 662839
Number of successful extensions: 2079
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2079
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000474
(976 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086083.1| PREDICTED: brain protein 44-like protein-lik... 218 4e-57
Alignment gi|XP_003086082.1| PREDICTED: brain protein 44-like protein-lik... 218 4e-57
Alignment gi|NP_061289.1| brain protein 44-like protein [Mus musculus]. 218 4e-57
Alignment gi|XP_001477052.1| PREDICTED: brain protein 44-like protein-lik... 217 1e-56
Alignment gi|XP_001478848.1| PREDICTED: brain protein 44-like protein-lik... 217 1e-56
Alignment gi|XP_003086084.1| PREDICTED: brain protein 44-like protein-lik... 216 2e-56
Alignment gi|XP_003086085.1| PREDICTED: brain protein 44-like protein-lik... 171 1e-42
Alignment gi|NP_001094954.1| brain protein 44-like protein 2 [Mus musculu... 150 1e-36
Alignment gi|XP_993428.1| PREDICTED: brain protein 44-like protein 2-like... 147 2e-35
Alignment gi|XP_983690.1| PREDICTED: brain protein 44-like protein 2-like... 147 2e-35
>ref|XP_003086083.1| PREDICTED: brain protein 44-like protein-like [Mus musculus].
Length = 109
Score = 218 bits (556), Expect = 4e-57
Identities = 104/109 (95%), Positives = 106/109 (97%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60
Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
CYSLTFMRFAYKVQPRNWLLFACH TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 61 CYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGRLINYEMSKRPSA 109
>ref|XP_003086082.1| PREDICTED: brain protein 44-like protein-like [Mus musculus].
Length = 109
Score = 218 bits (556), Expect = 4e-57
Identities = 104/109 (95%), Positives = 106/109 (97%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60
Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
CYSLTFMRFAYKVQPRNWLLFACH TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 61 CYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGRLINYEMSKRPSA 109
>ref|NP_061289.1| brain protein 44-like protein [Mus musculus].
Length = 109
Score = 218 bits (556), Expect = 4e-57
Identities = 104/109 (95%), Positives = 106/109 (97%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60
Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
CYSLTFMRFAYKVQPRNWLLFACH TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 61 CYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGRLINYEMSKRPSA 109
>ref|XP_001477052.1| PREDICTED: brain protein 44-like protein-like isoform 2 [Mus
musculus].
Length = 109
Score = 217 bits (552), Expect = 1e-56
Identities = 103/109 (94%), Positives = 106/109 (97%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
MAGALVRKAADYV+SKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1 MAGALVRKAADYVQSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60
Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
CYSLTFMRFAYKVQPRNWLLFACH TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 61 CYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGRLINYEMSKRPSA 109
>ref|XP_001478848.1| PREDICTED: brain protein 44-like protein-like isoform 2 [Mus
musculus].
Length = 109
Score = 217 bits (552), Expect = 1e-56
Identities = 103/109 (94%), Positives = 106/109 (97%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
MAGALVRKAADYV+SKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1 MAGALVRKAADYVQSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60
Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
CYSLTFMRFAYKVQPRNWLLFACH TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 61 CYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGRLINYEMSKRPSA 109
>ref|XP_003086084.1| PREDICTED: brain protein 44-like protein-like [Mus musculus].
Length = 109
Score = 216 bits (550), Expect = 2e-56
Identities = 103/109 (94%), Positives = 105/109 (96%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
MAGALVRKAADYVRSKDFRDYLMS HFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1 MAGALVRKAADYVRSKDFRDYLMSKHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60
Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
CYSLTFMRFAYKVQPRNWLLFACH TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 61 CYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGRLINYEMSKRPSA 109
>ref|XP_003086085.1| PREDICTED: brain protein 44-like protein-like [Mus musculus].
Length = 86
Score = 171 bits (432), Expect = 1e-42
Identities = 79/84 (94%), Positives = 81/84 (96%)
Frame = +3
Query: 225 HFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHA 404
HFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACH
Sbjct: 3 HFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHV 62
Query: 405 TNEVAQLIQGGRLIRHEMSKKASA 476
TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 63 TNEVAQLIQGGRLINYEMSKRPSA 86
>ref|NP_001094954.1| brain protein 44-like protein 2 [Mus musculus].
Length = 119
Score = 150 bits (379), Expect = 1e-36
Identities = 68/106 (64%), Positives = 84/106 (79%)
Frame = +3
Query: 159 ALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYS 338
AL+RK DY+++K+FRDY+ STHFWGPVANWGLP+AA DMK P+IISGRMT AL YS
Sbjct: 6 ALMRKTLDYLKTKEFRDYITSTHFWGPVANWGLPLAAFKDMKAPPDIISGRMTTALIFYS 65
Query: 339 LTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
+ FMRFAY+VQPRN+LL ACH +N +AQ IQ GR ++H+ A A
Sbjct: 66 MAFMRFAYRVQPRNYLLLACHFSNVLAQSIQAGRFLKHQYGGGAKA 111
>ref|XP_993428.1| PREDICTED: brain protein 44-like protein 2-like [Mus musculus].
Length = 122
Score = 147 bits (370), Expect = 2e-35
Identities = 67/106 (63%), Positives = 82/106 (77%)
Frame = +3
Query: 159 ALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYS 338
AL+RK DY ++K+FRDY+ STHFWGPVANWGLP+AA DMK P+IISGRMT AL YS
Sbjct: 6 ALMRKTRDYFKTKEFRDYITSTHFWGPVANWGLPLAAFKDMKAPPDIISGRMTTALIFYS 65
Query: 339 LTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
+ FMRFAY+VQPRN+LL ACH +N +AQ IQ R ++H+ A A
Sbjct: 66 MAFMRFAYRVQPRNYLLLACHFSNVLAQSIQASRYLKHQYGGGAKA 111
>ref|XP_983690.1| PREDICTED: brain protein 44-like protein 2-like [Mus musculus].
Length = 122
Score = 147 bits (370), Expect = 2e-35
Identities = 67/106 (63%), Positives = 82/106 (77%)
Frame = +3
Query: 159 ALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYS 338
AL+RK DY ++K+FRDY+ STHFWGPVANWGLP+AA DMK P+IISGRMT AL YS
Sbjct: 6 ALMRKTRDYFKTKEFRDYITSTHFWGPVANWGLPLAAFKDMKAPPDIISGRMTTALIFYS 65
Query: 339 LTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
+ FMRFAY+VQPRN+LL ACH +N +AQ IQ R ++H+ A A
Sbjct: 66 MAFMRFAYRVQPRNYLLLACHFSNVLAQSIQASRYLKHQYGGGAKA 111
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,935,382
Number of extensions: 568745
Number of successful extensions: 1806
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1804
Number of HSP's successfully gapped: 10
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000474
(976 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121137.1| PREDICTED: brain protein 44-like protein-lik... 227 7e-60
Alignment gi|XP_003135074.1| PREDICTED: brain protein 44-like protein 2-l... 143 2e-34
Alignment gi|XP_003355119.1| PREDICTED: brain protein 44 [Sus scrofa]. 49 3e-06
Alignment gi|XP_003355118.1| PREDICTED: brain protein 44 [Sus scrofa]. 49 3e-06
Alignment gi|XP_003355117.1| PREDICTED: brain protein 44 [Sus scrofa]. 49 3e-06
Alignment gi|XP_001928682.3| PREDICTED: brain protein 44 isoform 1 [Sus s... 49 3e-06
>ref|XP_003121137.1| PREDICTED: brain protein 44-like protein-like [Sus scrofa].
Length = 109
Score = 227 bits (579), Expect = 7e-60
Identities = 109/109 (100%), Positives = 109/109 (100%)
Frame = +3
Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60
Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA
Sbjct: 61 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 109
>ref|XP_003135074.1| PREDICTED: brain protein 44-like protein 2-like [Sus scrofa].
Length = 158
Score = 143 bits (360), Expect = 2e-34
Identities = 66/98 (67%), Positives = 78/98 (79%)
Frame = +3
Query: 159 ALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYS 338
AL R+A + +++K+FRDYL STHFWGPVANWGLP+AA DM+ P+IISGRMT AL YS
Sbjct: 6 ALWRRALETLKTKEFRDYLASTHFWGPVANWGLPLAAFKDMRAPPDIISGRMTMALIFYS 65
Query: 339 LTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRH 452
+ FMRFAY+VQPRN LL ACH TN VAQ IQG R + H
Sbjct: 66 MAFMRFAYRVQPRNLLLMACHGTNVVAQSIQGSRYLMH 103
>ref|XP_003355119.1| PREDICTED: brain protein 44 [Sus scrofa].
Length = 127
Score = 49.3 bits (116), Expect = 3e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125
>ref|XP_003355118.1| PREDICTED: brain protein 44 [Sus scrofa].
Length = 127
Score = 49.3 bits (116), Expect = 3e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125
>ref|XP_003355117.1| PREDICTED: brain protein 44 [Sus scrofa].
Length = 127
Score = 49.3 bits (116), Expect = 3e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125
>ref|XP_001928682.3| PREDICTED: brain protein 44 isoform 1 [Sus scrofa].
Length = 127
Score = 49.3 bits (116), Expect = 3e-06
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
FW P+ WGL A + DM + E +S + L + R++ + P+NW LFA +
Sbjct: 43 FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102
Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
A Q R+ R+ KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,276,164
Number of extensions: 451512
Number of successful extensions: 1276
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1276
Number of HSP's successfully gapped: 6
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000474
(976 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 965 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 965 bits (487), Expect = 0.0
Identities = 493/495 (99%)
Strand = Plus / Plus
Query: 455 gatgagtaaaaaggcatccgcatgacagtggaaaacgaagatccggcgtttgaaggatgg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3691980 gatgagtaaaaaggcatccgcatgacagtggaaaacgaagatccggcgtttgaaggatgg 3692039
Query: 515 cagtgccagctgctgacactcgggttccgtcgtcatgagtagtcttgctaagaacaatat 574
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3692040 cagtgccagctgctgacactcgggttccgtcgtcatgaatagtcttgctaagaacaatat 3692099
Query: 575 gctgcatgctctttttactaaccagactatttttctagaaacagcagagcctctaaacca 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3692100 gctgcatgctctttttactaaccagactatttttctagaaacagcagagcctctaaacca 3692159
Query: 635 actctgcggccttaaaagtgctagataattcacttctcttcagcaagagtcgcccagatg 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3692160 actctgcggccttaaaagtgctagataattcacttctcttcagcaagagtcgcccagatg 3692219
Query: 695 tgcaatctgtgtaataattcccagtgatggttttatctgcagtaatgtactaatgagaac 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3692220 tgcaatctgtgtaataattcccagtgatggttttatctgcagtaatgtactaatgagaac 3692279
Query: 755 ccgaagagaacgaaatctgtagccgttggcatttacgtactcagaaatcatggcctctcc 814
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3692280 ccgaagagaacgaaatctgtagccgttggcgtttacgtactcagaaatcatggcctctcc 3692339
Query: 815 tctgatgaccccgagacagccgacagctggccttgcctaagtcacattgccaatgtttga 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3692340 tctgatgaccccgagacagccgacagctggccttgcctaagtcacattgccaatgtttga 3692399
Query: 875 aagatgtttgtacttccgcgcagtgtacagtgagatgctgtaaattaatggcaataaatg 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3692400 aagatgtttgtacttccgcgcagtgtacagtgagatgctgtaaattaatggcaataaatg 3692459
Query: 935 atttaaagatttgtc 949
|||||||||||||||
Sbjct: 3692460 atttaaagatttgtc 3692474
Score = 387 bits (195), Expect = e-105
Identities = 204/207 (98%)
Strand = Plus / Plus
Query: 14 gtaaggcggggccgagctgtcgtgaggggcgctcgctggagggttctgtgtccgcgctgt 73
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 3681097 gtaaggcggggccgagctgtcgtgaggggtgctagctggagggttctgtgtccgcgctgt 3681156
Query: 74 ccgctccgactggtgtcattgggctccaaggagcgttggcggcggcaccgagggcggcgc 133
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3681157 ccgctccgactggtgtcattgggctccaaggagcgttggcggcggcaccgagggtggcgc 3681216
Query: 134 tgtgtccggcacggccatggcgggtgcgctggtgcgaaaggcggcggactatgtccggag 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3681217 tgtgtccggcacggccatggcgggtgcgctggtgcgaaaggcggcggactatgtccggag 3681276
Query: 194 caaggacttccgcgactacctcatgag 220
|||||||||||||||||||||||||||
Sbjct: 3681277 caaggacttccgcgactacctcatgag 3681303
Score = 260 bits (131), Expect = 1e-66
Identities = 134/135 (99%)
Strand = Plus / Plus
Query: 321 gccctctgctgttactccctgaccttcatgagatttgcctacaaggtccagcctcggaac 380
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3691511 gccctctgctgttactccctgaccttcatgagatttgcctacaaggtgcagcctcggaac 3691570
Query: 381 tggctcctgttcgcctgccacgccacaaacgaagtggcccagctcatccagggcggccgg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3691571 tggctcctgttcgcctgccacgccacaaacgaagtggcccagctcatccagggcggccgg 3691630
Query: 441 ctcatccggcacgag 455
|||||||||||||||
Sbjct: 3691631 ctcatccggcacgag 3691645
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 224 gcacttctggggcccggttgccaactggggtcttcccatcgccgccatcaacgacatgaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3690772 gcacttctggggcccggttgccaactggggtcttcccatcgccgccatcaacgacatgaa 3690831
Query: 284 gaagtcccccgagatcatcagcgggcggatgacgttcg 321
||||||||||||||||||||||||||||||||||||||
Sbjct: 3690832 gaagtcccccgagatcatcagcgggcggatgacgttcg 3690869
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,104,263
Number of extensions: 82
Number of successful extensions: 82
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 4
Length of query: 976
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 955
Effective length of database: 2,808,413,156
Effective search space: 2682034563980
Effective search space used: 2682034563980
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)