Animal-Genome cDNA 20110601C-000474


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000474
         (976 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001070510.1| brain protein 44-like protein [Bos taurus].       227   1e-59
Alignment   gi|NP_001069277.1| brain protein 44-like protein 2 [Bos taurus].     144   2e-34
Alignment   gi|NP_001180050.1| brain protein 44 [Bos taurus].                     49   5e-06
Alignment   gi|XP_002685868.1| PREDICTED: brain protein 44 isoform 4 [Bos t...    49   5e-06
Alignment   gi|XP_002685867.1| PREDICTED: brain protein 44 isoform 3 [Bos t...    49   5e-06
Alignment   gi|XP_002685866.1| PREDICTED: brain protein 44 isoform 2 [Bos t...    49   5e-06
Alignment   gi|XP_002685865.1| PREDICTED: brain protein 44 isoform 1 [Bos t...    49   5e-06
Alignment   gi|XP_001788182.1| PREDICTED: brain protein 44 isoform 1 [Bos t...    49   5e-06
Alignment   gi|XP_002703817.1| PREDICTED: brain protein 44 [Bos taurus].          49   5e-06
Alignment   gi|XP_002703816.1| PREDICTED: brain protein 44 [Bos taurus].          49   5e-06

>ref|NP_001070510.1| brain protein 44-like protein [Bos taurus].
          Length = 109

 Score =  227 bits (579), Expect = 1e-59
 Identities = 109/109 (100%), Positives = 109/109 (100%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
           MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1   MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60

Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA
Sbjct: 61  CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 109


>ref|NP_001069277.1| brain protein 44-like protein 2 [Bos taurus].
          Length = 181

 Score =  144 bits (362), Expect = 2e-34
 Identities = 67/98 (68%), Positives = 79/98 (80%)
 Frame = +3

Query: 159 ALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYS 338
           AL RKA + V++K+FRDYL STHFWGPVANWGLP+AA  DM+ SP+IISGRMT AL  YS
Sbjct: 6   ALCRKAMETVKTKEFRDYLASTHFWGPVANWGLPLAAFRDMRASPDIISGRMTTALIFYS 65

Query: 339 LTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRH 452
           + FMRFAY+VQPRN LL ACH TN VAQ +Q GR + +
Sbjct: 66  MAFMRFAYRVQPRNLLLMACHGTNIVAQSMQAGRYLNY 103


>ref|NP_001180050.1| brain protein 44 [Bos taurus].
          Length = 127

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125


>ref|XP_002685868.1| PREDICTED: brain protein 44 isoform 4 [Bos taurus].
          Length = 127

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125


>ref|XP_002685867.1| PREDICTED: brain protein 44 isoform 3 [Bos taurus].
          Length = 127

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125


>ref|XP_002685866.1| PREDICTED: brain protein 44 isoform 2 [Bos taurus].
          Length = 127

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125


>ref|XP_002685865.1| PREDICTED: brain protein 44 isoform 1 [Bos taurus].
          Length = 127

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125


>ref|XP_001788182.1| PREDICTED: brain protein 44 isoform 1 [Bos taurus].
          Length = 127

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125


>ref|XP_002703817.1| PREDICTED: brain protein 44 [Bos taurus].
          Length = 127

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125


>ref|XP_002703816.1| PREDICTED: brain protein 44 [Bos taurus].
          Length = 127

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,717,757
Number of extensions: 665679
Number of successful extensions: 1943
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1943
Number of HSP's successfully gapped: 10
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000474
         (976 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_863111.1| PREDICTED: similar to Brain protein 44-like pro...   224   7e-59
Alignment   gi|XP_863085.1| PREDICTED: similar to Brain protein 44-like pro...   224   7e-59
Alignment   gi|XP_851085.1| PREDICTED: similar to Brain protein 44-like pro...   224   7e-59
Alignment   gi|XP_537999.1| PREDICTED: similar to Brain protein 44-like pro...   138   7e-33
Alignment   gi|XP_863032.1| PREDICTED: similar to brain protein 44-like iso...    49   7e-06

>ref|XP_863111.1| PREDICTED: similar to Brain protein 44-like protein isoform 5
           [Canis familiaris].
          Length = 109

 Score =  224 bits (572), Expect = 7e-59
 Identities = 107/109 (98%), Positives = 108/109 (99%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
           MAGALVRK ADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1   MAGALVRKTADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60

Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLI+HEMSKKASA
Sbjct: 61  CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIKHEMSKKASA 109


>ref|XP_863085.1| PREDICTED: similar to Brain protein 44-like protein isoform 4
           [Canis familiaris].
          Length = 109

 Score =  224 bits (572), Expect = 7e-59
 Identities = 107/109 (98%), Positives = 108/109 (99%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
           MAGALVRK ADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1   MAGALVRKTADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60

Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLI+HEMSKKASA
Sbjct: 61  CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIKHEMSKKASA 109


>ref|XP_851085.1| PREDICTED: similar to Brain protein 44-like protein isoform 2
           [Canis familiaris].
          Length = 109

 Score =  224 bits (572), Expect = 7e-59
 Identities = 107/109 (98%), Positives = 108/109 (99%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
           MAGALVRK ADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1   MAGALVRKTADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60

Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLI+HEMSKKASA
Sbjct: 61  CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIKHEMSKKASA 109


>ref|XP_537999.1| PREDICTED: similar to Brain protein 44-like protein [Canis
           familiaris].
          Length = 123

 Score =  138 bits (348), Expect = 7e-33
 Identities = 64/109 (58%), Positives = 81/109 (74%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
           M   L ++A DY+++K+FRDY+ STHFWGP+ANWGLP+AAI DM  SP IISG MT AL 
Sbjct: 3   MVAGLWQRARDYMKTKEFRDYVTSTHFWGPLANWGLPLAAIKDMNASPTIISGPMTTALI 62

Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
            YS+ FMRFAY+VQPRN LL ACH+TN V Q +Q  R + H+    ++A
Sbjct: 63  FYSMAFMRFAYRVQPRNLLLLACHSTNVVVQSVQVSRYLIHQYGGDSAA 111


>ref|XP_863032.1| PREDICTED: similar to brain protein 44-like isoform 3 [Canis
           familiaris].
          Length = 53

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMS 221
           MAGALVRK ADYVRSKDFRDYLMS
Sbjct: 1   MAGALVRKTADYVRSKDFRDYLMS 24


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,792,170
Number of extensions: 662730
Number of successful extensions: 1962
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1962
Number of HSP's successfully gapped: 5
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000474
         (976 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057182.1| brain protein 44-like protein [Homo sapiens].        223   3e-58
Alignment   gi|NP_001182451.1| brain protein 44-like protein 2 [Homo sapien...   129   3e-30
Alignment   gi|NP_056230.1| brain protein 44 [Homo sapiens].                      49   5e-06
Alignment   gi|NP_001137146.1| brain protein 44 [Homo sapiens].                   49   5e-06

>ref|NP_057182.1| brain protein 44-like protein [Homo sapiens].
          Length = 109

 Score =  223 bits (567), Expect = 3e-58
 Identities = 106/109 (97%), Positives = 108/109 (99%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
           MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1   MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60

Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLI+HEM+K ASA
Sbjct: 61  CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIKHEMTKTASA 109


>ref|NP_001182451.1| brain protein 44-like protein 2 [Homo sapiens].
          Length = 136

 Score =  129 bits (325), Expect = 3e-30
 Identities = 61/95 (64%), Positives = 71/95 (74%)
 Frame = +3

Query: 162 LVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSL 341
           L RK  D  +SK+FR+Y+ STHFWGP  +WGLP+AA  DMK SPEIISGRMT AL  YS 
Sbjct: 7   LWRKMRDNFQSKEFREYVSSTHFWGPAFSWGLPLAAFKDMKASPEIISGRMTTALILYSA 66

Query: 342 TFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLI 446
            FMRFAY+VQPRN LL ACH TN +AQ +Q  R +
Sbjct: 67  IFMRFAYRVQPRNLLLMACHCTNVMAQSVQASRYL 101


>ref|NP_056230.1| brain protein 44 [Homo sapiens].
          Length = 127

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGAAGASQLFRIWRYNQELKAKA 125


>ref|NP_001137146.1| brain protein 44 [Homo sapiens].
          Length = 127

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGAAGASQLFRIWRYNQELKAKA 125


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,369,998
Number of extensions: 662839
Number of successful extensions: 2079
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2079
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000474
         (976 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003086083.1| PREDICTED: brain protein 44-like protein-lik...   218   4e-57
Alignment   gi|XP_003086082.1| PREDICTED: brain protein 44-like protein-lik...   218   4e-57
Alignment   gi|NP_061289.1| brain protein 44-like protein [Mus musculus].        218   4e-57
Alignment   gi|XP_001477052.1| PREDICTED: brain protein 44-like protein-lik...   217   1e-56
Alignment   gi|XP_001478848.1| PREDICTED: brain protein 44-like protein-lik...   217   1e-56
Alignment   gi|XP_003086084.1| PREDICTED: brain protein 44-like protein-lik...   216   2e-56
Alignment   gi|XP_003086085.1| PREDICTED: brain protein 44-like protein-lik...   171   1e-42
Alignment   gi|NP_001094954.1| brain protein 44-like protein 2 [Mus musculu...   150   1e-36
Alignment   gi|XP_993428.1| PREDICTED: brain protein 44-like protein 2-like...   147   2e-35
Alignment   gi|XP_983690.1| PREDICTED: brain protein 44-like protein 2-like...   147   2e-35

>ref|XP_003086083.1| PREDICTED: brain protein 44-like protein-like [Mus musculus].
          Length = 109

 Score =  218 bits (556), Expect = 4e-57
 Identities = 104/109 (95%), Positives = 106/109 (97%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
           MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1   MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60

Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           CYSLTFMRFAYKVQPRNWLLFACH TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 61  CYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGRLINYEMSKRPSA 109


>ref|XP_003086082.1| PREDICTED: brain protein 44-like protein-like [Mus musculus].
          Length = 109

 Score =  218 bits (556), Expect = 4e-57
 Identities = 104/109 (95%), Positives = 106/109 (97%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
           MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1   MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60

Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           CYSLTFMRFAYKVQPRNWLLFACH TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 61  CYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGRLINYEMSKRPSA 109


>ref|NP_061289.1| brain protein 44-like protein [Mus musculus].
          Length = 109

 Score =  218 bits (556), Expect = 4e-57
 Identities = 104/109 (95%), Positives = 106/109 (97%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
           MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1   MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60

Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           CYSLTFMRFAYKVQPRNWLLFACH TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 61  CYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGRLINYEMSKRPSA 109


>ref|XP_001477052.1| PREDICTED: brain protein 44-like protein-like isoform 2 [Mus
           musculus].
          Length = 109

 Score =  217 bits (552), Expect = 1e-56
 Identities = 103/109 (94%), Positives = 106/109 (97%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
           MAGALVRKAADYV+SKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1   MAGALVRKAADYVQSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60

Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           CYSLTFMRFAYKVQPRNWLLFACH TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 61  CYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGRLINYEMSKRPSA 109


>ref|XP_001478848.1| PREDICTED: brain protein 44-like protein-like isoform 2 [Mus
           musculus].
          Length = 109

 Score =  217 bits (552), Expect = 1e-56
 Identities = 103/109 (94%), Positives = 106/109 (97%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
           MAGALVRKAADYV+SKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1   MAGALVRKAADYVQSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60

Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           CYSLTFMRFAYKVQPRNWLLFACH TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 61  CYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGRLINYEMSKRPSA 109


>ref|XP_003086084.1| PREDICTED: brain protein 44-like protein-like [Mus musculus].
          Length = 109

 Score =  216 bits (550), Expect = 2e-56
 Identities = 103/109 (94%), Positives = 105/109 (96%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
           MAGALVRKAADYVRSKDFRDYLMS HFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1   MAGALVRKAADYVRSKDFRDYLMSKHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60

Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           CYSLTFMRFAYKVQPRNWLLFACH TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 61  CYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGRLINYEMSKRPSA 109


>ref|XP_003086085.1| PREDICTED: brain protein 44-like protein-like [Mus musculus].
          Length = 86

 Score =  171 bits (432), Expect = 1e-42
 Identities = 79/84 (94%), Positives = 81/84 (96%)
 Frame = +3

Query: 225 HFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHA 404
           HFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACH 
Sbjct: 3   HFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHV 62

Query: 405 TNEVAQLIQGGRLIRHEMSKKASA 476
           TNEVAQLIQGGRLI +EMSK+ SA
Sbjct: 63  TNEVAQLIQGGRLINYEMSKRPSA 86


>ref|NP_001094954.1| brain protein 44-like protein 2 [Mus musculus].
          Length = 119

 Score =  150 bits (379), Expect = 1e-36
 Identities = 68/106 (64%), Positives = 84/106 (79%)
 Frame = +3

Query: 159 ALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYS 338
           AL+RK  DY+++K+FRDY+ STHFWGPVANWGLP+AA  DMK  P+IISGRMT AL  YS
Sbjct: 6   ALMRKTLDYLKTKEFRDYITSTHFWGPVANWGLPLAAFKDMKAPPDIISGRMTTALIFYS 65

Query: 339 LTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           + FMRFAY+VQPRN+LL ACH +N +AQ IQ GR ++H+    A A
Sbjct: 66  MAFMRFAYRVQPRNYLLLACHFSNVLAQSIQAGRFLKHQYGGGAKA 111


>ref|XP_993428.1| PREDICTED: brain protein 44-like protein 2-like [Mus musculus].
          Length = 122

 Score =  147 bits (370), Expect = 2e-35
 Identities = 67/106 (63%), Positives = 82/106 (77%)
 Frame = +3

Query: 159 ALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYS 338
           AL+RK  DY ++K+FRDY+ STHFWGPVANWGLP+AA  DMK  P+IISGRMT AL  YS
Sbjct: 6   ALMRKTRDYFKTKEFRDYITSTHFWGPVANWGLPLAAFKDMKAPPDIISGRMTTALIFYS 65

Query: 339 LTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           + FMRFAY+VQPRN+LL ACH +N +AQ IQ  R ++H+    A A
Sbjct: 66  MAFMRFAYRVQPRNYLLLACHFSNVLAQSIQASRYLKHQYGGGAKA 111


>ref|XP_983690.1| PREDICTED: brain protein 44-like protein 2-like [Mus musculus].
          Length = 122

 Score =  147 bits (370), Expect = 2e-35
 Identities = 67/106 (63%), Positives = 82/106 (77%)
 Frame = +3

Query: 159 ALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYS 338
           AL+RK  DY ++K+FRDY+ STHFWGPVANWGLP+AA  DMK  P+IISGRMT AL  YS
Sbjct: 6   ALMRKTRDYFKTKEFRDYITSTHFWGPVANWGLPLAAFKDMKAPPDIISGRMTTALIFYS 65

Query: 339 LTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           + FMRFAY+VQPRN+LL ACH +N +AQ IQ  R ++H+    A A
Sbjct: 66  MAFMRFAYRVQPRNYLLLACHFSNVLAQSIQASRYLKHQYGGGAKA 111


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,935,382
Number of extensions: 568745
Number of successful extensions: 1806
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1804
Number of HSP's successfully gapped: 10
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000474
         (976 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003121137.1| PREDICTED: brain protein 44-like protein-lik...   227   7e-60
Alignment   gi|XP_003135074.1| PREDICTED: brain protein 44-like protein 2-l...   143   2e-34
Alignment   gi|XP_003355119.1| PREDICTED: brain protein 44 [Sus scrofa].          49   3e-06
Alignment   gi|XP_003355118.1| PREDICTED: brain protein 44 [Sus scrofa].          49   3e-06
Alignment   gi|XP_003355117.1| PREDICTED: brain protein 44 [Sus scrofa].          49   3e-06
Alignment   gi|XP_001928682.3| PREDICTED: brain protein 44 isoform 1 [Sus s...    49   3e-06

>ref|XP_003121137.1| PREDICTED: brain protein 44-like protein-like [Sus scrofa].
          Length = 109

 Score =  227 bits (579), Expect = 7e-60
 Identities = 109/109 (100%), Positives = 109/109 (100%)
 Frame = +3

Query: 150 MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 329
           MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC
Sbjct: 1   MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALC 60

Query: 330 CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 476
           CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA
Sbjct: 61  CYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHEMSKKASA 109


>ref|XP_003135074.1| PREDICTED: brain protein 44-like protein 2-like [Sus scrofa].
          Length = 158

 Score =  143 bits (360), Expect = 2e-34
 Identities = 66/98 (67%), Positives = 78/98 (79%)
 Frame = +3

Query: 159 ALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYS 338
           AL R+A + +++K+FRDYL STHFWGPVANWGLP+AA  DM+  P+IISGRMT AL  YS
Sbjct: 6   ALWRRALETLKTKEFRDYLASTHFWGPVANWGLPLAAFKDMRAPPDIISGRMTMALIFYS 65

Query: 339 LTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRH 452
           + FMRFAY+VQPRN LL ACH TN VAQ IQG R + H
Sbjct: 66  MAFMRFAYRVQPRNLLLMACHGTNVVAQSIQGSRYLMH 103


>ref|XP_003355119.1| PREDICTED: brain protein 44 [Sus scrofa].
          Length = 127

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125


>ref|XP_003355118.1| PREDICTED: brain protein 44 [Sus scrofa].
          Length = 127

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125


>ref|XP_003355117.1| PREDICTED: brain protein 44 [Sus scrofa].
          Length = 127

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125


>ref|XP_001928682.3| PREDICTED: brain protein 44 isoform 1 [Sus scrofa].
          Length = 127

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 228 FWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHAT 407
           FW P+  WGL  A + DM +  E +S   +  L      + R++  + P+NW LFA +  
Sbjct: 43  FWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFF 102

Query: 408 NEVAQLIQGGRLIRHEMSKKASA 476
              A   Q  R+ R+    KA A
Sbjct: 103 VGTAGASQLFRIWRYNQELKAKA 125


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,276,164
Number of extensions: 451512
Number of successful extensions: 1276
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1276
Number of HSP's successfully gapped: 6
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000474
         (976 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                         965   0.0  

>Sscrofa_Chr01 
||          Length = 315321322

 Score =  965 bits (487), Expect = 0.0
 Identities = 493/495 (99%)
 Strand = Plus / Plus

                                                                           
Query: 455     gatgagtaaaaaggcatccgcatgacagtggaaaacgaagatccggcgtttgaaggatgg 514
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3691980 gatgagtaaaaaggcatccgcatgacagtggaaaacgaagatccggcgtttgaaggatgg 3692039

                                                                           
Query: 515     cagtgccagctgctgacactcgggttccgtcgtcatgagtagtcttgctaagaacaatat 574
               |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3692040 cagtgccagctgctgacactcgggttccgtcgtcatgaatagtcttgctaagaacaatat 3692099

                                                                           
Query: 575     gctgcatgctctttttactaaccagactatttttctagaaacagcagagcctctaaacca 634
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3692100 gctgcatgctctttttactaaccagactatttttctagaaacagcagagcctctaaacca 3692159

                                                                           
Query: 635     actctgcggccttaaaagtgctagataattcacttctcttcagcaagagtcgcccagatg 694
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3692160 actctgcggccttaaaagtgctagataattcacttctcttcagcaagagtcgcccagatg 3692219

                                                                           
Query: 695     tgcaatctgtgtaataattcccagtgatggttttatctgcagtaatgtactaatgagaac 754
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3692220 tgcaatctgtgtaataattcccagtgatggttttatctgcagtaatgtactaatgagaac 3692279

                                                                           
Query: 755     ccgaagagaacgaaatctgtagccgttggcatttacgtactcagaaatcatggcctctcc 814
               |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3692280 ccgaagagaacgaaatctgtagccgttggcgtttacgtactcagaaatcatggcctctcc 3692339

                                                                           
Query: 815     tctgatgaccccgagacagccgacagctggccttgcctaagtcacattgccaatgtttga 874
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3692340 tctgatgaccccgagacagccgacagctggccttgcctaagtcacattgccaatgtttga 3692399

                                                                           
Query: 875     aagatgtttgtacttccgcgcagtgtacagtgagatgctgtaaattaatggcaataaatg 934
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3692400 aagatgtttgtacttccgcgcagtgtacagtgagatgctgtaaattaatggcaataaatg 3692459

                              
Query: 935     atttaaagatttgtc 949
               |||||||||||||||
Sbjct: 3692460 atttaaagatttgtc 3692474



 Score =  387 bits (195), Expect = e-105
 Identities = 204/207 (98%)
 Strand = Plus / Plus

                                                                           
Query: 14      gtaaggcggggccgagctgtcgtgaggggcgctcgctggagggttctgtgtccgcgctgt 73
               ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 3681097 gtaaggcggggccgagctgtcgtgaggggtgctagctggagggttctgtgtccgcgctgt 3681156

                                                                           
Query: 74      ccgctccgactggtgtcattgggctccaaggagcgttggcggcggcaccgagggcggcgc 133
               |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3681157 ccgctccgactggtgtcattgggctccaaggagcgttggcggcggcaccgagggtggcgc 3681216

                                                                           
Query: 134     tgtgtccggcacggccatggcgggtgcgctggtgcgaaaggcggcggactatgtccggag 193
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3681217 tgtgtccggcacggccatggcgggtgcgctggtgcgaaaggcggcggactatgtccggag 3681276

                                          
Query: 194     caaggacttccgcgactacctcatgag 220
               |||||||||||||||||||||||||||
Sbjct: 3681277 caaggacttccgcgactacctcatgag 3681303



 Score =  260 bits (131), Expect = 1e-66
 Identities = 134/135 (99%)
 Strand = Plus / Plus

                                                                           
Query: 321     gccctctgctgttactccctgaccttcatgagatttgcctacaaggtccagcctcggaac 380
               ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3691511 gccctctgctgttactccctgaccttcatgagatttgcctacaaggtgcagcctcggaac 3691570

                                                                           
Query: 381     tggctcctgttcgcctgccacgccacaaacgaagtggcccagctcatccagggcggccgg 440
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3691571 tggctcctgttcgcctgccacgccacaaacgaagtggcccagctcatccagggcggccgg 3691630

                              
Query: 441     ctcatccggcacgag 455
               |||||||||||||||
Sbjct: 3691631 ctcatccggcacgag 3691645



 Score =  194 bits (98), Expect = 6e-47
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                           
Query: 224     gcacttctggggcccggttgccaactggggtcttcccatcgccgccatcaacgacatgaa 283
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3690772 gcacttctggggcccggttgccaactggggtcttcccatcgccgccatcaacgacatgaa 3690831

                                                     
Query: 284     gaagtcccccgagatcatcagcgggcggatgacgttcg 321
               ||||||||||||||||||||||||||||||||||||||
Sbjct: 3690832 gaagtcccccgagatcatcagcgggcggatgacgttcg 3690869


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,104,263
Number of extensions: 82
Number of successful extensions: 82
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 4
Length of query: 976
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 955
Effective length of database: 2,808,413,156
Effective search space: 2682034563980
Effective search space used: 2682034563980
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)