Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000485
(1788 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776327.1| clusterin preproprotein [Bos taurus]. 661 0.0
Alignment gi|NP_001029692.1| clusterin-like protein 1 precursor [Bos taur... 103 5e-22
>ref|NP_776327.1| clusterin preproprotein [Bos taurus].
Length = 439
Score = 661 bits (1705), Expect = 0.0
Identities = 330/436 (75%), Positives = 360/436 (82%)
Frame = +1
Query: 121 MKTXXXXXXXXXTWENGPWVLGDKAISDKELQEMSTEGSKYVNKEIKNALKEVKQIKTLI 300
MKT +WE+G W AISDKELQEMSTEGSKYVNKEIKNALKEVKQIKT I
Sbjct: 1 MKTLLLLMGLLLSWESG-W-----AISDKELQEMSTEGSKYVNKEIKNALKEVKQIKTQI 54
Query: 301 EQXXXXXXXXXXXXXXXXXXXXXXXXXTRDTETKLKGSQGLCNETMMALWEECKPCLKQT 480
EQ TRD+E KLK SQG+CNETM ALWEECKPCLKQT
Sbjct: 55 EQTNEERKLLLSSLEEAKKKKEDALNDTRDSENKLKASQGVCNETMTALWEECKPCLKQT 114
Query: 481 CMKFYARVCRSGSGLVGHQLEEFLNQSSPFYFWINGDRIDSLMENDRQQSHVMDIMEDSF 660
CMKFYARVCRSGSGLVGHQLEEFLNQSSPFYFWINGDRIDSLMENDR+QSHVMD+MEDSF
Sbjct: 115 CMKFYARVCRSGSGLVGHQLEEFLNQSSPFYFWINGDRIDSLMENDREQSHVMDVMEDSF 174
Query: 661 NRASNIMDELFQDRFFNREPFDTQFFSPFGSSHRGSLFFNPKSRFARNIMPFPLFTDLNY 840
RAS+IMDELFQDRFF R P DTQ++SPF S RGSLFFNPKSRFARN+MPFPL N+
Sbjct: 175 TRASSIMDELFQDRFFLRRPQDTQYYSPFSSFPRGSLFFNPKSRFARNVMPFPLLEPFNF 234
Query: 841 HDMFQPFFDMIHQAQQAMDAHLHRIPYHFPEAGVPENSNDRAVCKEIRHNSTGCLRMKDQ 1020
HD+FQPF+DMIHQAQQAMDAHL R PYHFP EN NDR VCKEIRHNSTGCLRMKDQ
Sbjct: 235 HDVFQPFYDMIHQAQQAMDAHLQRTPYHFPTMEFTEN-NDRTVCKEIRHNSTGCLRMKDQ 293
Query: 1021 CEKCREILSVDCSASNSSQMQLRQELYTSLQMAEKFSKLYDQLLQSYQQKMLNTSSLLKQ 1200
CEKC+EIL VDCSASN +Q LRQ+L SLQ+AEKFS+LYDQLLQSYQQKMLNTS+LLKQ
Sbjct: 294 CEKCQEILEVDCSASNPTQTLLRQQLNASLQLAEKFSRLYDQLLQSYQQKMLNTSALLKQ 353
Query: 1201 LNEQFSWVSQLANLTQNDDRYYLQVTTVNSHGSDPSVPSGLTKVVVKLFDSYPITLIIPQ 1380
LNEQF+WVSQLANLTQ+DD++YLQV TVNSH SDPS+PSGLTKV+VKLF+S+PIT+ +PQ
Sbjct: 354 LNEQFTWVSQLANLTQSDDQHYLQVFTVNSHNSDPSIPSGLTKVIVKLFNSFPITVTVPQ 413
Query: 1381 EVSDPKFMETVAEEAL 1428
EVS P FME VAE+AL
Sbjct: 414 EVSSPNFMENVAEKAL 429
>ref|NP_001029692.1| clusterin-like protein 1 precursor [Bos taurus].
Length = 465
Score = 103 bits (257), Expect = 5e-22
Identities = 98/424 (23%), Positives = 178/424 (41%), Gaps = 23/424 (5%)
Frame = +1
Query: 187 DKAISDKELQEMSTEGSKYVNKEIKNALKEVKQIKTLIEQXXXXXXXXXXXXXXXXXXXX 366
D+ ++ + S G V++E+K AL +KQ+K L+E+
Sbjct: 26 DRTSIREDPKGFSKAGEIDVDEEVKKALIGMKQMKILMERREEEHSKLMRTLKKCREEKQ 85
Query: 367 XXXXXTRDTETKLKGSQGLCNETMMALWEECKPCLKQTCMKFYARVCRSGSGLVGHQLEE 546
+ + L+ + LC ++M W+ECK CL+ CM+FY C+S + +E
Sbjct: 86 EALKLMNEVQEHLEEEERLCQVSLMDSWDECKSCLESDCMRFYT-TCQSSWSSMKSTIER 144
Query: 547 FLNQSSPFYFWINGDRIDSLMENDRQQSHVMDIM--EDSFNRASNIMDELFQDRFF---- 708
+ F F + D L ++ + +M E+ F++ + + L+ F
Sbjct: 145 VFRKIYQFLFPFHEDDEKELPVGEKFTEEDVQLMQIENVFSQLTVDVGFLYNMSFHVFKQ 204
Query: 709 NREPFDTQFFSPFGS--SHRGSLFFNPKSRF-ARNIMPFPLFTDLNYHDMFQPFFDMIHQ 879
++ FD F S F S FF S+ A+ P + ++ +F F ++Q
Sbjct: 205 MQQEFDLAFQSYFMSDTDSMEPYFFPAFSKEPAKKAHPMQSWDIPSFFQLFCNFSLSVYQ 264
Query: 880 AQQAMDAHLHRIPYHFPEA------GVPENS----NDRAVCKEIRHNSTGCLRMKDQCEK 1029
+ A + + + G P ++ R +C E NS+ CL+ +C+K
Sbjct: 265 SVSATVTEMLKATEDLSKQDKDSAHGGPSSTTWPVRGRGLCGEPGQNSSECLQFHARCQK 324
Query: 1030 CREILSVDCSASNSSQMQLRQELYT----SLQMAEKFSKLYDQLLQSYQQKMLNTSSLLK 1197
C++ L DC A ELYT +L++ ++ Y Q+LQ Q + +T+ L++
Sbjct: 325 CQDYLWADCPAV--------PELYTKADEALELVNISNQQYAQVLQMTQHHLEDTTYLME 376
Query: 1198 QLNEQFSWVSQLANLTQNDDRYYLQVTTVNSHGSDPSVPSGLTKVVVKLFDSYPITLIIP 1377
++ EQF WV++LA+ T + + + V + + + S TL IP
Sbjct: 377 KMREQFGWVTELASQTPGSENIFSFIKVVPGVHEGNFSKQDEKMIDISILPSSNFTLTIP 436
Query: 1378 QEVS 1389
E S
Sbjct: 437 LEES 440
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,656,693
Number of extensions: 1750274
Number of successful extensions: 6547
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6519
Number of HSP's successfully gapped: 2
Length of query: 596
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 488
Effective length of database: 14,107,870
Effective search space: 6884640560
Effective search space used: 6884640560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000485
(1788 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003370.1| clusterin precursor [Canis lupus familiaris]. 631 0.0
Alignment gi|NP_001003135.2| clusterin-like protein 1 precursor [Canis lu... 91 3e-18
>ref|NP_001003370.1| clusterin precursor [Canis lupus familiaris].
Length = 445
Score = 631 bits (1628), Expect = 0.0
Identities = 320/438 (73%), Positives = 358/438 (81%), Gaps = 2/438 (0%)
Frame = +1
Query: 121 MKTXXXXXXXXXTWENGPWVLGDKAISDKELQEMSTEGSKYVNKEIKNALKEVKQIKTLI 300
MKT TW+NG VLGD+A+SD ELQEMSTEGSKY+NKEIKNALK VKQIKTLI
Sbjct: 2 MKTLLLLVGLLLTWDNGR-VLGDQAVSDTELQEMSTEGSKYINKEIKNALKGVKQIKTLI 60
Query: 301 EQXXXXXXXXXXXXXXXXXXXXXXXXXTRDTETKLKGSQGLCNETMMALWEECKPCLKQT 480
EQ T+D+ETKLK SQG+CN+TMMALWEECKPCLKQT
Sbjct: 61 EQTNEERKSLLSNLEEAKKKKEDALNDTKDSETKLKASQGVCNDTMMALWEECKPCLKQT 120
Query: 481 CMKFYARVCRSGSGLVGHQLEEFLNQSSPFYFWINGDRIDSLMENDRQQSHVMDIMEDSF 660
CMKFYARVCRSGSGLVGHQLEEFLNQSSPFYFW+NGDRIDSL+ENDRQQ+H +D+M+DSF
Sbjct: 121 CMKFYARVCRSGSGLVGHQLEEFLNQSSPFYFWMNGDRIDSLLENDRQQTHALDVMQDSF 180
Query: 661 NRASNIMDELFQDRFFNREPFDTQFFSPFGSSHRGSLFFNPKSRFARNIMPFPLFTDLNY 840
NRAS+IMDELFQDRFF REP DT +SPF R FFNPK R ARNI+PFP F LN+
Sbjct: 181 NRASSIMDELFQDRFFTREPQDTYHYSPFSLFQRRP-FFNPKFRIARNIIPFPRFQPLNF 239
Query: 841 HDMFQPFFDMIHQAQQAMDAHLHRIPYHFPEAGVPENSNDRAVCKEIRHNSTGCLRMKDQ 1020
HDMFQPFFDMIHQAQQAMD +LHRIPYHFP PE N R VCKEIRHNSTGCL+MKDQ
Sbjct: 240 HDMFQPFFDMIHQAQQAMDVNLHRIPYHFP-IEFPEEDN-RTVCKEIRHNSTGCLKMKDQ 297
Query: 1021 CEKCREILSVDCSASNSSQMQLRQELYTSLQMAEKFSKLYDQLLQSYQQKMLNTSSLLKQ 1200
CEKC+EILSVDCS++N +Q+QLRQEL SLQ+AEKF+KLYD+LLQSYQ+KM NTSSLLKQ
Sbjct: 298 CEKCQEILSVDCSSNNPAQVQLRQELSNSLQIAEKFTKLYDELLQSYQEKMFNTSSLLKQ 357
Query: 1201 LNEQFSWVSQLANLTQNDDRYYLQVTTVNSHGSDPSVPSGLTKVVVKLFDSYPITLIIPQ 1380
LNEQFSWVSQLANLTQ++D +YLQVTTV S SD +VP G TKVVVKLFDS PIT++IP+
Sbjct: 358 LNEQFSWVSQLANLTQSEDPFYLQVTTVGSQTSDSNVPVGFTKVVVKLFDSDPITVMIPE 417
Query: 1381 EVS--DPKFMETVAEEAL 1428
VS +PKFMETVAE+AL
Sbjct: 418 AVSRNNPKFMETVAEKAL 435
>ref|NP_001003135.2| clusterin-like protein 1 precursor [Canis lupus familiaris].
Length = 465
Score = 91.3 bits (225), Expect = 3e-18
Identities = 94/448 (20%), Positives = 175/448 (39%), Gaps = 34/448 (7%)
Frame = +1
Query: 187 DKAISDKELQEMSTEGSKYVNKEIKNALKEVKQIKTLIEQXXXXXXXXXXXXXXXXXXXX 366
DK L+ S G V++E+K AL +KQ+K ++E+
Sbjct: 26 DKTDMHGNLKGFSEAGDIDVDEEVKKALIGMKQMKIMMERREEEHTNLMKTLKKCKEEKQ 85
Query: 367 XXXXXTRDTETKLKGSQGLCNETMMALWEECKPCLKQTCMKFYARVCRSGSGLVGHQLEE 546
+ + L+ + LC ++ W+ECK CL+ CM+F+ C+ + + +E+
Sbjct: 86 EALKLMNEVQEHLEEEESLCQVSLTDSWDECKSCLESNCMRFHT-TCQPSWSSMKNTVEQ 144
Query: 547 FLNQSSPFYFWINGDRIDSL------MENDRQQSHVMDIMED-------SFNRASNI--- 678
F + F + D L +E D Q + + ++ FNR+ N+
Sbjct: 145 FFRNIYQYLFPFDEDNEKDLPVGEKFIEEDAQVAQIENVFNQLTVDVRFLFNRSLNVFKQ 204
Query: 679 MDELFQDRFFNREPFDTQFFSPFGSSHRGSLFFNPKSRFARNIMPFPLFTDLNYHDMFQP 858
M + F F + DT P + +L P+ + P + ++ +F
Sbjct: 205 MQQEFDQTFQSYFMSDTDLMQP---NFLPALSKEPR----KKADPVQSWDIPSFFQLFYN 257
Query: 859 F-FDMIHQAQQAMDAHLHRIPYHFPEAGVPENSND---------------RAVCKEIRHN 990
F + H + L+ I +P+ ND R E N
Sbjct: 258 FSLSIYHSISTTITKTLNAI------EDLPKQDNDSNHGSLSSKTLPVQHRGPYGEFGQN 311
Query: 991 STGCLRMKDQCEKCREILSVDCSASNSSQMQLRQELYTSLQMAEKFSKLYDQLLQSYQQK 1170
+ C + +C+KC++ L DC +L ++ +L++ + Y Q+LQ Q
Sbjct: 312 LSECFQFHARCQKCQDYLWEDC----PDVPELHTKVDEALELVNISHQQYAQVLQMTQHH 367
Query: 1171 MLNTSSLLKQLNEQFSWVSQLANLTQNDDRYYLQVTTVNSHGSDPSVPSGLTKVVVKLFD 1350
+ +T+ L++++ E+F WV+ LAN + + V + T + + +
Sbjct: 368 LEDTTYLMEKMREEFGWVADLANQAPGAENIFDSTKMVPNIHEGNFSKQDETMIDLSILS 427
Query: 1351 SYPITLIIPQEVS--DPKFMETVAEEAL 1428
S TL IP E S F+ + E+A+
Sbjct: 428 SPNFTLKIPLEESAETSNFISYMLEKAV 455
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,982,371
Number of extensions: 1734741
Number of successful extensions: 7310
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7261
Number of HSP's successfully gapped: 3
Length of query: 596
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 487
Effective length of database: 15,240,880
Effective search space: 7422308560
Effective search space used: 7422308560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000485
(1788 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_976084.1| clusterin precursor [Homo sapiens]. 571 e-163
Alignment gi|NP_055225.1| clusterin-like protein 1 precursor [Homo sapien... 112 9e-25
Alignment gi|NP_954636.1| clusterin-like protein 1 precursor [Homo sapien... 112 9e-25
>ref|NP_976084.1| clusterin precursor [Homo sapiens].
Length = 449
Score = 571 bits (1472), Expect = e-163
Identities = 287/439 (65%), Positives = 341/439 (77%), Gaps = 3/439 (0%)
Frame = +1
Query: 121 MKTXXXXXXXXXTWENGPWVLGDKAISDKELQEMSTEGSKYVNKEIKNALKEVKQIKTLI 300
MKT TWE+G VLGD+ +SD ELQEMS +GSKYVNKEI+NA+ VKQIKTLI
Sbjct: 2 MKTLLLFVGLLLTWESGQ-VLGDQTVSDNELQEMSNQGSKYVNKEIQNAVNGVKQIKTLI 60
Query: 301 EQXXXXXXXXXXXXXXXXXXXXXXXXXTRDTETKLKGSQGLCNETMMALWEECKPCLKQT 480
E+ TR++ETKLK G+CNETMMALWEECKPCLKQT
Sbjct: 61 EKTNEERKTLLSNLEEAKKKKEDALNETRESETKLKELPGVCNETMMALWEECKPCLKQT 120
Query: 481 CMKFYARVCRSGSGLVGHQLEEFLNQSSPFYFWINGDRIDSLMENDRQQSHVMDIMEDSF 660
CMKFYARVCRSGSGLVG QLEEFLNQSSPFYFW+NGDRIDSL+ENDRQQ+H++D+M+D F
Sbjct: 121 CMKFYARVCRSGSGLVGRQLEEFLNQSSPFYFWMNGDRIDSLLENDRQQTHMLDVMQDHF 180
Query: 661 NRASNIMDELFQDRFFNREPFDTQFFSPFGSSHRGSLFFNPKSRFARNIMPFPLFTDLNY 840
+RAS+I+DELFQDRFF REP DT + PF HR FF PKSR R++MPF + LN+
Sbjct: 181 SRASSIIDELFQDRFFTREPQDTYHYLPFSLPHRRPHFFFPKSRIVRSLMPFSPYEPLNF 240
Query: 841 HDMFQPFFDMIHQAQQAMDAHLHRIPY-HFPEAGVPENSNDRAVCKEIRHNSTGCLRMKD 1017
H MFQPF +MIH+AQQAMD H H + H P + E +DR VC+EIRHNSTGCLRMKD
Sbjct: 241 HAMFQPFLEMIHEAQQAMDIHFHSPAFQHPPTEFIREGDDDRTVCREIRHNSTGCLRMKD 300
Query: 1018 QCEKCREILSVDCSASNSSQMQLRQELYTSLQMAEKFSKLYDQLLQSYQQKMLNTSSLLK 1197
QC+KCREILSVDCS +N SQ +LR+EL SLQ+AE+ ++ Y++LL+SYQ KMLNTSSLL+
Sbjct: 301 QCDKCREILSVDCSTNNPSQAKLRRELDESLQVAERLTRKYNELLKSYQWKMLNTSSLLE 360
Query: 1198 QLNEQFSWVSQLANLTQNDDRYYLQVTTVNSHGSDPSVPSGLTKVVVKLFDSYPITLIIP 1377
QLNEQF+WVS+LANLTQ +D+YYL+VTTV SH SD VPSG+T+VVVKLFDS PIT+ +P
Sbjct: 361 QLNEQFNWVSRLANLTQGEDQYYLRVTTVASHTSDSDVPSGVTEVVVKLFDSDPITVTVP 420
Query: 1378 QEVS--DPKFMETVAEEAL 1428
EVS +PKFMETVAE+AL
Sbjct: 421 VEVSRKNPKFMETVAEKAL 439
>ref|NP_055225.1| clusterin-like protein 1 precursor [Homo sapiens].
Length = 466
Score = 112 bits (281), Expect = 9e-25
Identities = 100/439 (22%), Positives = 183/439 (41%), Gaps = 25/439 (5%)
Frame = +1
Query: 187 DKAISDKELQEMSTEGSKYVNKEIKNALKEVKQIKTLIEQXXXXXXXXXXXXXXXXXXXX 366
DK + L+ S G ++E+K AL +KQ+K ++E+
Sbjct: 26 DKTAISENLKSFSEVGEIDADEEVKKALTGIKQMKIMMERKEKEHTNLMSTLKKCREEKQ 85
Query: 367 XXXXXTRDTETKLKGSQGLCNETMMALWEECKPCLKQTCMKFYARVCRSGSGLVGHQLEE 546
+ + L+ + LC E++ W EC+ CL+ CM+ Y C+ V +++E
Sbjct: 86 EALKLLNEVQEHLEEEERLCRESLADSWGECRSCLENNCMRIYT-TCQPSWSSVKNKIER 144
Query: 547 FLNQSSPFYFWINGDR------IDSLMENDRQQSHVMDI-------MEDSFNRASNIM-- 681
F + F F + D + L+E D Q + + D+ + FNR+ N+
Sbjct: 145 FFRKIYQFLFPFHEDNEKDLPISEKLIEEDAQLTQMEDVFSQLTVDVNSLFNRSFNVFRQ 204
Query: 682 -----DELFQDRFFNREPFDTQFFSPFGSSHRGSLFFNPKSRFARNIMPFPLFTDLNYHD 846
D+ FQ F + +F P S + + N F LF + +
Sbjct: 205 MQQEFDQTFQSHFISDTDLTEPYFFPAFSKEPMTKADLEQCWDIPNF--FQLFCNFSV-S 261
Query: 847 MFQPFFDMIHQAQQAMD--AHLHRIPYHFPEAGVPENSNDRAVCKEIRHNSTGCLRMKDQ 1020
+++ + I + +A++ + P H DR +C E+ N + C + ++
Sbjct: 262 IYESVSETITKMLKAIEDLPKQDKAPDHGGLISKMLPGQDRGLCGELDQNLSRCFKFHEK 321
Query: 1021 CEKCREILSVDCSASNSSQMQLRQELYTSLQMAEKFSKLYDQLLQSYQQKMLNTSSLLKQ 1200
C+KC+ LS DC + L EL ++++ ++ Y Q+LQ ++ + +T+ L+++
Sbjct: 322 CQKCQAHLSEDCPDVPA----LHTELDEAIRLVNVSNQQYGQILQMTRKHLEDTAYLVEK 377
Query: 1201 LNEQFSWVSQLANLTQNDDRYYLQVTTV-NSHGSDPSVPSGLTKVVVKLFDSYPITLIIP 1377
+ QF WVS+LAN + + + V H + S + + S TL IP
Sbjct: 378 MRGQFGWVSELANQAPETEIIFNSIQVVPRIHEGNISKQDETMMTDLSILPSSNFTLKIP 437
Query: 1378 QEVS--DPKFMETVAEEAL 1428
E S F+ V +AL
Sbjct: 438 LEESAESSNFIGYVVAKAL 456
>ref|NP_954636.1| clusterin-like protein 1 precursor [Homo sapiens].
Length = 466
Score = 112 bits (281), Expect = 9e-25
Identities = 100/439 (22%), Positives = 183/439 (41%), Gaps = 25/439 (5%)
Frame = +1
Query: 187 DKAISDKELQEMSTEGSKYVNKEIKNALKEVKQIKTLIEQXXXXXXXXXXXXXXXXXXXX 366
DK + L+ S G ++E+K AL +KQ+K ++E+
Sbjct: 26 DKTAISENLKSFSEVGEIDADEEVKKALTGIKQMKIMMERKEKEHTNLMSTLKKCREEKQ 85
Query: 367 XXXXXTRDTETKLKGSQGLCNETMMALWEECKPCLKQTCMKFYARVCRSGSGLVGHQLEE 546
+ + L+ + LC E++ W EC+ CL+ CM+ Y C+ V +++E
Sbjct: 86 EALKLLNEVQEHLEEEERLCRESLADSWGECRSCLENNCMRIYT-TCQPSWSSVKNKIER 144
Query: 547 FLNQSSPFYFWINGDR------IDSLMENDRQQSHVMDI-------MEDSFNRASNIM-- 681
F + F F + D + L+E D Q + + D+ + FNR+ N+
Sbjct: 145 FFRKIYQFLFPFHEDNEKDLPISEKLIEEDAQLTQMEDVFSQLTVDVNSLFNRSFNVFRQ 204
Query: 682 -----DELFQDRFFNREPFDTQFFSPFGSSHRGSLFFNPKSRFARNIMPFPLFTDLNYHD 846
D+ FQ F + +F P S + + N F LF + +
Sbjct: 205 MQQEFDQTFQSHFISDTDLTEPYFFPAFSKEPMTKADLEQCWDIPNF--FQLFCNFSV-S 261
Query: 847 MFQPFFDMIHQAQQAMD--AHLHRIPYHFPEAGVPENSNDRAVCKEIRHNSTGCLRMKDQ 1020
+++ + I + +A++ + P H DR +C E+ N + C + ++
Sbjct: 262 IYESVSETITKMLKAIEDLPKQDKAPDHGGLISKMLPGQDRGLCGELDQNLSRCFKFHEK 321
Query: 1021 CEKCREILSVDCSASNSSQMQLRQELYTSLQMAEKFSKLYDQLLQSYQQKMLNTSSLLKQ 1200
C+KC+ LS DC + L EL ++++ ++ Y Q+LQ ++ + +T+ L+++
Sbjct: 322 CQKCQAHLSEDCPDVPA----LHTELDEAIRLVNVSNQQYGQILQMTRKHLEDTAYLVEK 377
Query: 1201 LNEQFSWVSQLANLTQNDDRYYLQVTTV-NSHGSDPSVPSGLTKVVVKLFDSYPITLIIP 1377
+ QF WVS+LAN + + + V H + S + + S TL IP
Sbjct: 378 MRGQFGWVSELANQAPETEIIFNSIQVVPRIHEGNISKQDETMMTDLSILPSSNFTLKIP 437
Query: 1378 QEVS--DPKFMETVAEEAL 1428
E S F+ V +AL
Sbjct: 438 LEESAESSNFIGYVVAKAL 456
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,583,071
Number of extensions: 1675445
Number of successful extensions: 6799
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6762
Number of HSP's successfully gapped: 3
Length of query: 596
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 488
Effective length of database: 14,737,052
Effective search space: 7191681376
Effective search space used: 7191681376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000485
(1788 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038520.2| clusterin precursor [Mus musculus]. 534 e-152
>ref|NP_038520.2| clusterin precursor [Mus musculus].
Length = 448
Score = 534 bits (1376), Expect = e-152
Identities = 267/426 (62%), Positives = 327/426 (76%), Gaps = 3/426 (0%)
Frame = +1
Query: 160 WENGPWVLGDKAISDKELQEMSTEGSKYVNKEIKNALKEVKQIKTLIEQXXXXXXXXXXX 339
W+NG VLG++ +SD ELQE+ST+GS+Y+NKEI+NA++ VK IKTLIE+
Sbjct: 14 WDNG-MVLGEQEVSDNELQELSTQGSRYINKEIQNAVQGVKHIKTLIEKTNAERKSLLNS 72
Query: 340 XXXXXXXXXXXXXXTRDTETKLKGSQGLCNETMMALWEECKPCLKQTCMKFYARVCRSGS 519
TRD+E KLK +CNETMMALWEECKPCLK TCMKFYARVCRSGS
Sbjct: 73 LEEAKKKKEDALEDTRDSEMKLKAFPEVCNETMMALWEECKPCLKHTCMKFYARVCRSGS 132
Query: 520 GLVGHQLEEFLNQSSPFYFWINGDRIDSLMENDRQQSHVMDIMEDSFNRASNIMDELFQD 699
GLVG QLEEFLNQSSPFYFW+NGDRIDSL+E+DRQQS V+D M+DSF RAS I+D LFQD
Sbjct: 133 GLVGQQLEEFLNQSSPFYFWMNGDRIDSLLESDRQQSQVLDAMQDSFARASGIIDTLFQD 192
Query: 700 RFFNREPFDTQFFSPFGSSHRGSLFFNPKSRFARNIMPFPLFTDLNYHDMFQPFFDMIHQ 879
RFF RE D +FSP G H+ F PKSR R++M + ++H+MFQPFF+MIHQ
Sbjct: 193 RFFARELHDPHYFSPIGFPHKRPHFLYPKSRLVRSLMSPSHYGPPSFHNMFQPFFEMIHQ 252
Query: 880 AQQAMDAHLHRIPYHFPEAG-VPENSNDRAVCKEIRHNSTGCLRMKDQCEKCREILSVDC 1056
AQQAMD LH + FP+ + E +DR VCKEIR NSTGCL+MK QCEKC+EILSVDC
Sbjct: 253 AQQAMDVQLHSPAFQFPDVDFLREGEDDRTVCKEIRRNSTGCLKMKGQCEKCQEILSVDC 312
Query: 1057 SASNSSQMQLRQELYTSLQMAEKFSKLYDQLLQSYQQKMLNTSSLLKQLNEQFSWVSQLA 1236
S +N +Q LRQEL SLQ+AE+ ++ Y +LLQS+Q KMLNTSSLL+QLN+QF+WVSQLA
Sbjct: 313 STNNPAQANLRQELNDSLQVAERLTEQYKELLQSFQSKMLNTSSLLEQLNDQFNWVSQLA 372
Query: 1237 NLTQNDDRYYLQVTTVNSHGSDPSVPSGLTKVVVKLFDSYPITLIIPQEVS--DPKFMET 1410
NLTQ +D+YYL+V+TV +H SD VPS +T+VVVKLFDS PIT+++P+EVS +PKFM+T
Sbjct: 373 NLTQGEDKYYLRVSTVTTHSSDSEVPSRVTEVVVKLFDSDPITVVLPEEVSKDNPKFMDT 432
Query: 1411 VAEEAL 1428
VAE+AL
Sbjct: 433 VAEKAL 438
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,000,887
Number of extensions: 1392878
Number of successful extensions: 5298
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5263
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 489
Effective length of database: 12,403,707
Effective search space: 6065412723
Effective search space used: 6065412723
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000485
(1788 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999136.1| clusterin precursor [Sus scrofa]. 811 0.0
Alignment gi|XP_003360830.1| PREDICTED: clusterin-like protein 1-like, pa... 66 5e-11
>ref|NP_999136.1| clusterin precursor [Sus scrofa].
Length = 446
Score = 811 bits (2095), Expect = 0.0
Identities = 402/436 (92%), Positives = 402/436 (92%)
Frame = +1
Query: 121 MKTXXXXXXXXXTWENGPWVLGDKAISDKELQEMSTEGSKYVNKEIKNALKEVKQIKTLI 300
MKT TWENGPWVLGDKAISDKELQEMSTEGSKYVNKEIKNALKEVKQIKTLI
Sbjct: 1 MKTLLLLVGLLLTWENGPWVLGDKAISDKELQEMSTEGSKYVNKEIKNALKEVKQIKTLI 60
Query: 301 EQXXXXXXXXXXXXXXXXXXXXXXXXXTRDTETKLKGSQGLCNETMMALWEECKPCLKQT 480
EQ TRDTETKLKGSQGLCNETMMALWEECKPCLKQT
Sbjct: 61 EQSNEERKSLLSSLEEAKKKKEDALNDTRDTETKLKGSQGLCNETMMALWEECKPCLKQT 120
Query: 481 CMKFYARVCRSGSGLVGHQLEEFLNQSSPFYFWINGDRIDSLMENDRQQSHVMDIMEDSF 660
CMKFYARVCRSGSGLVGHQLEEFLNQSSPFYFWINGDRIDSLMENDRQQSHVMDIMEDSF
Sbjct: 121 CMKFYARVCRSGSGLVGHQLEEFLNQSSPFYFWINGDRIDSLMENDRQQSHVMDIMEDSF 180
Query: 661 NRASNIMDELFQDRFFNREPFDTQFFSPFGSSHRGSLFFNPKSRFARNIMPFPLFTDLNY 840
NRASNIMDELFQDRFFNREPFDTQFFSPFGSSHRGSLFFNPKSRFARNIMPFPLFTDLNY
Sbjct: 181 NRASNIMDELFQDRFFNREPFDTQFFSPFGSSHRGSLFFNPKSRFARNIMPFPLFTDLNY 240
Query: 841 HDMFQPFFDMIHQAQQAMDAHLHRIPYHFPEAGVPENSNDRAVCKEIRHNSTGCLRMKDQ 1020
HDMFQPFFDMIHQAQQAMDAHLHRIPYHFPEAGVPENSNDRAVCKEIRHNSTGCLRMKDQ
Sbjct: 241 HDMFQPFFDMIHQAQQAMDAHLHRIPYHFPEAGVPENSNDRAVCKEIRHNSTGCLRMKDQ 300
Query: 1021 CEKCREILSVDCSASNSSQMQLRQELYTSLQMAEKFSKLYDQLLQSYQQKMLNTSSLLKQ 1200
CEKCREILSVDCSASNSSQMQLRQELYTSLQMAEKFSKLYDQLLQSYQQKMLNTSSLLKQ
Sbjct: 301 CEKCREILSVDCSASNSSQMQLRQELYTSLQMAEKFSKLYDQLLQSYQQKMLNTSSLLKQ 360
Query: 1201 LNEQFSWVSQLANLTQNDDRYYLQVTTVNSHGSDPSVPSGLTKVVVKLFDSYPITLIIPQ 1380
LNEQFSWVSQLANLTQNDDRYYLQVTTVNSHGSDPSVPSGLTKVVVKLFDSYPITLIIPQ
Sbjct: 361 LNEQFSWVSQLANLTQNDDRYYLQVTTVNSHGSDPSVPSGLTKVVVKLFDSYPITLIIPQ 420
Query: 1381 EVSDPKFMETVAEEAL 1428
EVSDPKFMETVAEEAL
Sbjct: 421 EVSDPKFMETVAEEAL 436
>ref|XP_003360830.1| PREDICTED: clusterin-like protein 1-like, partial [Sus scrofa].
Length = 285
Score = 66.2 bits (160), Expect = 5e-11
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 20/206 (9%)
Frame = +1
Query: 187 DKAISDKELQEMSTEGSKYVNKEIKNALKEVKQIKTLIEQXXXXXXXXXXXXXXXXXXXX 366
DK L+ S G +++E+K AL +KQ+K L+E+
Sbjct: 26 DKTAIRGNLKGFSEAGEIDIDEEVKKALIGMKQMKILMERREEEHSSLMRTLKKCREEKQ 85
Query: 367 XXXXXTRDTETKLKGSQGLCNETMMALWEECKPCLKQTCMKFYARVCRSGSGLVGHQLEE 546
+ + L+ + LC + WEECK CL+ CM+FY C++ + +E+
Sbjct: 86 EALKLMNEVQEHLEEEERLCQVSSRDSWEECKSCLESNCMRFYT-TCQNSWSSMKSTIEQ 144
Query: 547 FLNQSSPFYFWINGDRIDSL------MENDRQQSHVMDIMED-------SFNRASNI--- 678
F+ + F F +GD L E D Q + + ++ +NR+ N+
Sbjct: 145 FIWKIYQFLFPFHGDNEKDLPMGEKFTEEDAQLTQIENVFSQLTMDVRFLYNRSYNVFKQ 204
Query: 679 ----MDELFQDRFFNREPFDTQFFSP 744
D+ FQ F + F +F P
Sbjct: 205 MQQEFDQAFQSYFMSNTDFIEPYFFP 230
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,862,790
Number of extensions: 1249210
Number of successful extensions: 4188
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4179
Number of HSP's successfully gapped: 2
Length of query: 596
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 491
Effective length of database: 8,729,747
Effective search space: 4286305777
Effective search space used: 4286305777
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000485
(1788 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 817 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 817 bits (412), Expect = 0.0
Identities = 412/412 (100%)
Strand = Plus / Minus
Query: 535 cagctcgaggagttcctgaaccagagctcccccttctacttctggatcaacggtgaccgc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12522003 cagctcgaggagttcctgaaccagagctcccccttctacttctggatcaacggtgaccgc 12521944
Query: 595 atcgactccctgatggagaatgaccgccagcagagccacgtgatggacatcatggaggac 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12521943 atcgactccctgatggagaatgaccgccagcagagccacgtgatggacatcatggaggac 12521884
Query: 655 agcttcaaccgggcgtccaacattatggatgagctcttccaggaccgcttctttaaccgg 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12521883 agcttcaaccgggcgtccaacattatggatgagctcttccaggaccgcttctttaaccgg 12521824
Query: 715 gagcctttcgacactcagttcttctcaccctttggctcatcccacaggggctcgctcttc 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12521823 gagcctttcgacactcagttcttctcaccctttggctcatcccacaggggctcgctcttc 12521764
Query: 775 ttcaaccccaagtcccgcttcgcccggaacatcatgcctttccccctgttcacagacctg 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12521763 ttcaaccccaagtcccgcttcgcccggaacatcatgcctttccccctgttcacagacctg 12521704
Query: 835 aattaccatgacatgttccagcccttcttcgacatgatccaccaggcccagcaggccatg 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12521703 aattaccatgacatgttccagcccttcttcgacatgatccaccaggcccagcaggccatg 12521644
Query: 895 gatgcccaccttcatagaattccctatcacttccctgaggcgggagtcccag 946
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12521643 gatgcccaccttcatagaattccctatcacttccctgaggcgggagtcccag 12521592
Score = 472 bits (238), Expect = e-130
Identities = 247/250 (98%)
Strand = Plus / Minus
Query: 1451 gggaggagtgagaggtgaacctcatgtttctaaggatgggggcatctgcgtccagttgcc 1510
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 12516901 gggaggagtgagaggtgaacctcacgtttctaaggatgggggcatctgcgtccagttgcc 12516842
Query: 1511 ccctgagttgagccataggcctctagagagagctctgcgtgtcaccagctgaccaggccc 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12516841 ccctgagttgagccataggcctctagagagagctctgcgtgtcaccagctgaccaggccc 12516782
Query: 1571 tggacgccaggccctccggaccccacccagcctctcctccctctggattctgcacgctaa 1630
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12516781 tgggcgccaggccctcctgaccccacccagcctctcctccctctggattctgcacgctaa 12516722
Query: 1631 cacctgcctttgctgatcacaggaagaaatttcccgtgtgccactaactcagtaaaccgc 1690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12516721 cacctgcctttgctgatcacaggaagaaatttcccgtgtgccactaactcagtaaaccgc 12516662
Query: 1691 cttggaatct 1700
||||||||||
Sbjct: 12516661 cttggaatct 12516652
Score = 466 bits (235), Expect = e-128
Identities = 235/235 (100%)
Strand = Plus / Minus
Query: 1051 gactgttcggccagcaattcctctcagatgcagctgcgtcaggagctgtacacgtccctg 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12517995 gactgttcggccagcaattcctctcagatgcagctgcgtcaggagctgtacacgtccctg 12517936
Query: 1111 cagatggcggagaagttcagcaagctctacgaccagctgctccagtcctaccagcagaag 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12517935 cagatggcggagaagttcagcaagctctacgaccagctgctccagtcctaccagcagaag 12517876
Query: 1171 atgcttaacacgtcctccctgctgaagcagctcaacgagcagttcagctgggtgtcccag 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12517875 atgcttaacacgtcctccctgctgaagcagctcaacgagcagttcagctgggtgtcccag 12517816
Query: 1231 ctggccaacctcacgcagaatgacgaccgctactatctccaggtcaccacggtga 1285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12517815 ctggccaacctcacgcagaatgacgaccgctactatctccaggtcaccacggtga 12517761
Score = 327 bits (165), Expect = 1e-86
Identities = 171/173 (98%)
Strand = Plus / Minus
Query: 365 aggatgccctgaacgataccagggataccgagacaaagctgaagggatcccagggcttgt 424
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 12523184 aggatgccctgaacgataccagggatactgagacaaagctgaagggatcccagggcttgt 12523125
Query: 425 gcaatgagacgatgatggccctgtgggaagagtgcaagccctgcctgaaacagacctgca 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12523124 gcaatgaaacgatgatggccctgtgggaagagtgcaagccctgcctgaaacagacctgca 12523065
Query: 485 tgaagttctacgcgcgtgtctgcaggagcggctcgggactggttggccaccag 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12523064 tgaagttctacgcgcgtgtctgcaggagcggctcgggactggttggccaccag 12523012
Score = 325 bits (164), Expect = 5e-86
Identities = 171/172 (99%), Gaps = 1/172 (0%)
Strand = Plus / Minus
Query: 1281 ggtgaattcccacggctccgaccccagcgtgccctctggcctcactaaggtggtggtgaa 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12517302 ggtgaattcccacggctccgaccccagcgtgccctctggcctcactaaggtggtggtgaa 12517243
Query: 1341 gctctttgattcctaccccatcactctgattatcccgcaggaagtctccgatcctaaatt 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 12517242 gctctttgattcctaccccatcactctgattatcccgcaggaagtctccgatcct-aatt 12517184
Query: 1401 catggagactgtggcggaggaagcgctacagcagtaccgccaaaggagccgg 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12517183 catggagactgtggcggaggaagcgctacagcagtaccgccaaaggagccgg 12517132
Score = 299 bits (151), Expect = 3e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 217 gaaatgtccaccgaggggagtaagtacgttaataaagaaattaaaaatgccctcaaggag 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12526205 gaaatgtccaccgaggggagtaagtacgttaataaagaaattaaaaatgccctcaaggag 12526146
Query: 277 gtgaaacagataaagaccctaatagaacaatcaaatgaagagcgcaaatcactgctcagc 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12526145 gtgaaacagataaagaccctaatagaacaatcaaatgaagagcgcaaatcactgctcagc 12526086
Query: 337 tccctggaggaagccaagaagaagaaagagg 367
|||||||||||||||||||||||||||||||
Sbjct: 12526085 tccctggaggaagccaagaagaagaaagagg 12526055
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 82 gaggcgtgctagaattccagaactggagaagcaggcgagatgaagactctgctgctcttg 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12527875 gaggcgtgctagaattccagaactggagaagcaggcgagatgaagactctgctgctcttg 12527816
Query: 142 gtggggctgctgctgacctgggagaatggcccctgggtgctgggggacaaggccatctcg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12527815 gtggggctgctgctgacctgggagaatggcccctgggtgctgggggacaaggccatctcg 12527756
Query: 202 gacaaagagctccagg 217
||||||||||||||||
Sbjct: 12527755 gacaaagagctccagg 12527740
Score = 212 bits (107), Expect = 5e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 943 ccagaaaacagcaatgaccgagctgtgtgcaaggagatccgccacaactccacgggatgc 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12520512 ccagaaaacagcaatgaccgagctgtgtgcaaggagatccgccacaactccacgggatgc 12520453
Query: 1003 ctgaggatgaaggaccagtgtgagaagtgccgggagatcttgtcagt 1049
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12520452 ctgaggatgaaggaccagtgtgagaagtgccgggagatcttgtcagt 12520406
Score = 79.8 bits (40), Expect = 5e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 43 acgcggagtcgccagaggagcgcgcgggcaccgctgactg 82
||||||||||||||||||||||||||||||||||||||||
Sbjct: 12531189 acgcggagtcgccagaggagcgcgcgggcaccgctgactg 12531150
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,133,798
Number of extensions: 327
Number of successful extensions: 327
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 9
Length of query: 1788
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1766
Effective length of database: 2,808,408,574
Effective search space: 4959649541684
Effective search space used: 4959649541684
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)