Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000493
(2486 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776365.1| interferon-induced GTP-binding protein Mx1 [Bos... 947 0.0
Alignment gi|NP_776366.1| interferon-induced GTP-binding protein Mx2 [Bos... 711 0.0
Alignment gi|NP_001070288.1| dynamin-1 [Bos taurus]. 235 2e-61
Alignment gi|NP_001092839.1| dynamin-2 [Bos taurus]. 232 1e-60
Alignment gi|NP_001230213.1| dynamin 3 [Bos taurus]. 226 1e-58
Alignment gi|NP_001039959.1| dynamin-1-like protein [Bos taurus]. 181 2e-45
Alignment gi|NP_001179890.1| dynamin-like 120 kDa protein, mitochondrial ... 95 3e-19
Alignment gi|XP_002684877.1| PREDICTED: optic atrophy 1 homolog [Bos taur... 95 3e-19
>ref|NP_776365.1| interferon-induced GTP-binding protein Mx1 [Bos taurus].
Length = 648
Score = 947 bits (2449), Expect = 0.0
Identities = 495/656 (75%), Positives = 544/656 (82%)
Frame = +3
Query: 171 MVYSNCESKEPDSVSASNHLLLNGNDELVEKSHKTGPENNLYSQYEEKVRPCIDLIDSLR 350
MV+S+ +E DS +S LNG++++ KS NLYSQYEEKVRPCIDLIDSLR
Sbjct: 1 MVHSDLGIEELDSPESS----LNGSEDMESKS-------NLYSQYEEKVRPCIDLIDSLR 49
Query: 351 ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPXXXXXXXXXNEEDE 530
+LGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP NE DE
Sbjct: 50 SLGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLRLKKLGNE-DE 108
Query: 531 WKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDL 710
WKGKVS+ D EIE+ DASQVEKE+S AQIAIAGEG GISHELISLEVSSPHVPDLTLIDL
Sbjct: 109 WKGKVSFLDKEIEIPDASQVEKEISEAQIAIAGEGTGISHELISLEVSSPHVPDLTLIDL 168
Query: 711 PGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEG 890
PGITRVAVGNQP DIEYQIKSLI+KYI +QETINLVVVP NVDIATTEALRMAQEVDP+G
Sbjct: 169 PGITRVAVGNQPPDIEYQIKSLIRKYILRQETINLVVVPANVDIATTEALRMAQEVDPQG 228
Query: 891 DRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQLSLAKALQKE 1070
DRTIGILTKPDLVDKGTEDK+VDV RNLVFH KKGYMIVKCRGQQDI+ ++SL KALQ+E
Sbjct: 229 DRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQDIKHRMSLDKALQRE 288
Query: 1071 QAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQK 1250
+ FFE+HAHFRDLLEEG+ATIPCLAERLTSELIMHICKTLPLLENQIKE+HQ+ITEELQK
Sbjct: 289 RIFFEDHAHFRDLLEEGKATIPCLAERLTSELIMHICKTLPLLENQIKETHQRITEELQK 348
Query: 1251 YGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNEFCKWSAVVE 1430
YG DIPE+ES KMF LI+KID FN +I + I+GEE V +Y+ RLFTK+R EF KWSAVVE
Sbjct: 349 YGKDIPEEESEKMFCLIEKIDTFNKEIISTIEGEEFVEQYDSRLFTKVRAEFSKWSAVVE 408
Query: 1431 KNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDL 1610
KNF+ GY+AI K+I+ FEN+YRGRELPGFVNYKTFETIIKKQV VLEEPAVDMLHTVTD+
Sbjct: 409 KNFEKGYEAIRKEIKQFENRYRGRELPGFVNYKTFETIIKKQVRVLEEPAVDMLHTVTDI 468
Query: 1611 VRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYR 1790
+R FTDVS +FNEFFNLHRTAKSKIEDI+LEQE EAE SIRLHFQMEQ+VYCQDQVYR
Sbjct: 469 IRNTFTDVSGKHFNEFFNLHRTAKSKIEDIRLEQENEAEKSIRLHFQMEQLVYCQDQVYR 528
Query: 1791 GALQXXXXXXXXXXXXXXSNQYFLXXXXXXXXXXIAEIFQHLIAYHQEVGKRISSHIPLI 1970
ALQ SN YF EIFQHL AY QEV RIS HIPLI
Sbjct: 529 RALQQVREKEAEEEKNKKSNHYF---QSQVSEPSTDEIFQHLTAYQQEVSTRISGHIPLI 585
Query: 1971 IQFFILRTFGXXXXXXXXXXXXNKDQYDWLLRERSDTSDKRKFLKERLMRLTQARQ 2138
IQFF+LRT+G +KDQYDWLL+ER+DT DKRKFLKERL RLT+ARQ
Sbjct: 586 IQFFVLRTYGEQLKKSMLQLLQDKDQYDWLLKERTDTRDKRKFLKERLERLTRARQ 641
>ref|NP_776366.1| interferon-induced GTP-binding protein Mx2 [Bos taurus].
Length = 710
Score = 711 bits (1834), Expect = 0.0
Identities = 374/625 (59%), Positives = 455/625 (72%), Gaps = 4/625 (0%)
Frame = +3
Query: 276 GPENNLYSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVAL 455
GPENNLY +YEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVAL
Sbjct: 81 GPENNLYRKYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVAL 140
Query: 456 PRGSGIVTRCPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEG 635
PRGSGI+TRCP E EW GK++YR+ +L + S+VE E+ AQ IAG G
Sbjct: 141 PRGSGIITRCPLVLKLT---KRECEWTGKITYRNITQQLQNPSEVEWEIRRAQNIIAGNG 197
Query: 636 VGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINL 815
+GISHELI+LE++SP VPDLTLIDLPGITRVAV NQP DI QIK+LIKKYI +QETINL
Sbjct: 198 LGISHELINLEITSPEVPDLTLIDLPGITRVAVENQPQDIGLQIKALIKKYIQRQETINL 257
Query: 816 VVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKG 995
VVVPCNVDIATTEAL MAQEVDP+GDRTIGILTKPDLVDKGTE ++ V +NL +H KKG
Sbjct: 258 VVVPCNVDIATTEALSMAQEVDPDGDRTIGILTKPDLVDKGTEKGVLKVMQNLTYHLKKG 317
Query: 996 YMIVKCRGQQDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMH 1175
YMIVKCRGQQDI ++LSLA+A +KE FFE H +FR LL+EG+AT+P LAERLT+ELI H
Sbjct: 318 YMIVKCRGQQDITNKLSLAEATRKETMFFETHPYFRILLDEGKATVPLLAERLTTELIWH 377
Query: 1176 ICKTLPLLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEE 1355
I K+LPLLENQIKE HQ+ TEELQ+YG DIP DE KMFFLI+KI FN DI LI+GEE
Sbjct: 378 INKSLPLLENQIKEKHQRATEELQQYGDDIPSDEGDKMFFLIEKIKVFNEDIGKLIEGEE 437
Query: 1356 LVVEYECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTF 1535
+V+E E RL K+R EF W ++ N + + +++ +E +YRG+EL GFVNYKTF
Sbjct: 438 IVMETESRLCNKIREEFTSWILILTTNIEKVKSILNEEVSKYEKKYRGKELLGFVNYKTF 497
Query: 1536 ETIIKKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQE 1715
ET++K + L +PA+ ML ++V F D ++ +F EF NLH+T ++KIEDIK +Q
Sbjct: 498 ETVVKHYLGQLIDPALKMLQKAMEIVWQTFKDTAKKHFAEFCNLHQTVQNKIEDIKTKQM 557
Query: 1716 KEAETSIRLHFQMEQIVYCQDQVYRGAL----QXXXXXXXXXXXXXXSNQYFLXXXXXXX 1883
EA I+L F+ME++V+CQDQ+Y L + S Q FL
Sbjct: 558 AEAANLIQLQFRMEKLVFCQDQIYGVVLNKVREDIFNSMGKASETPQSKQPFL--NDQSS 615
Query: 1884 XXXIAEIFQHLIAYHQEVGKRISSHIPLIIQFFILRTFGXXXXXXXXXXXXNKDQYDWLL 2063
I EI HL AY E KR+++ IP IIQ+F+L+ G + Y WLL
Sbjct: 616 ISSIVEIGVHLNAYFMETSKRLANQIPFIIQYFMLQENGDKVQKAMMQLLQDTQHYSWLL 675
Query: 2064 RERSDTSDKRKFLKERLMRLTQARQ 2138
+E+SDT+ KRKFLKE++ RLTQA+Q
Sbjct: 676 QEQSDTATKRKFLKEKIFRLTQAQQ 700
>ref|NP_001070288.1| dynamin-1 [Bos taurus].
Length = 856
Score = 235 bits (599), Expect = 2e-61
Identities = 156/441 (35%), Positives = 235/441 (53%), Gaps = 5/441 (1%)
Frame = +3
Query: 333 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPXXXXXXX 509
L D+ A+G DL LP IAV+G QS+GKSSVLE G LPRGSGIVTR P
Sbjct: 16 LQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75
Query: 510 XXNEEDEW---KGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSP 680
E E+ KGK + +D +V E+ A + G GIS I+L V SP
Sbjct: 76 ATTEYAEFLHCKGK--------KFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSP 127
Query: 681 HVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEAL 860
HV +LTL+DLPG+T+V VG+QP DIE+QI+ ++ +++ K+ + L V P N D+A ++AL
Sbjct: 128 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187
Query: 861 RMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQ 1040
++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q+DI +
Sbjct: 188 KVAKEVDPQGQRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQKDIDGK 245
Query: 1041 LSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKES 1220
+ AL E+ FF +H +R L + R P L + L +L HI TLP L N+++
Sbjct: 246 KDITAALAAERKFFLSHPSYRHLAD--RMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 303
Query: 1221 HQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE-ELVVEYECRLFTKMR 1397
I +E+++Y + P+D + K L+ + F D I+G + + YE ++
Sbjct: 304 LLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARIN 363
Query: 1398 NEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEP 1577
F + + + ++I G F FE +KKQV L+EP
Sbjct: 364 RIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDLAFEATVKKQVQKLKEP 423
Query: 1578 AVDMLHTVTDLVRLAFTDVSE 1640
++ + V + SE
Sbjct: 424 SIKCVDMVVSELTATIRKCSE 444
>ref|NP_001092839.1| dynamin-2 [Bos taurus].
Length = 866
Score = 232 bits (592), Expect = 1e-60
Identities = 167/487 (34%), Positives = 259/487 (53%), Gaps = 10/487 (2%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ++G L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELIS 662
P E E+ S + ++ E +V +E+ A + G GIS I+
Sbjct: 67 RPLILQLIFSKTEYAEFLHCKSRKFTDFE-----EVRQEIEAETDRVTGTNKGISPVPIN 121
Query: 663 LEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDI 842
L + SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I ++ ++ L V P N+D+
Sbjct: 122 LRIYSPHVLNLTLIDLPGITKVPVGDQPQDIEYQIKDMILQFISRESSLILAVTPANMDL 181
Query: 843 ATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQ 1022
A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q
Sbjct: 182 ANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQ 239
Query: 1023 QDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLE 1202
+DI+ + + AL E+ FF +H +R + + R P L + L +L HI ++LP L
Sbjct: 240 KDIEGKKDIRTALAAERKFFLSHPAYRHIAD--RMGTPHLQKTLNQQLTNHIRESLPALR 297
Query: 1203 NQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQG-----EELVVE 1367
++++ + +E+++Y + P+D + K L+ + F D I+G + L +
Sbjct: 298 SKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELS 357
Query: 1368 YECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETII 1547
R+ F +E + K+ + ++I G F FE I+
Sbjct: 358 GGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIHGVRTGLFTPDLAFEAIV 413
Query: 1548 KKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIED---IKLEQEK 1718
KKQV L+EP + + DLV E N R SK+ ++ E E+
Sbjct: 414 KKQVVKLKEPCLKCV----DLV-----------IQELINTVRQCTSKLSSYPRLREETER 458
Query: 1719 EAETSIR 1739
T IR
Sbjct: 459 IVTTYIR 465
>ref|NP_001230213.1| dynamin 3 [Bos taurus].
Length = 858
Score = 226 bits (575), Expect = 1e-58
Identities = 158/437 (36%), Positives = 233/437 (53%), Gaps = 6/437 (1%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ALG L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEW---KGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHE 653
P E E+ KGK + +D +V E+ A + G GIS
Sbjct: 67 RPLVLQLITSKAEYAEFLHCKGK--------KFTDFDEVRHEIEAETDRVTGMNKGISSI 118
Query: 654 LISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCN 833
I+L V SPHV +LTLIDLPGIT+V VG+QP DIEYQI+ +I ++I ++ + L V P N
Sbjct: 119 PINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPAN 178
Query: 834 VDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKC 1013
D+A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V
Sbjct: 179 TDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYVGVVN 236
Query: 1014 RGQQDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLP 1193
R Q+DI + + A+ E+ FF +H +R + + R P L + L +L HI TLP
Sbjct: 237 RSQKDIDGKKDIKAAMLAERKFFLSHPAYRHIAD--RMGTPHLQKVLNQQLTNHIRDTLP 294
Query: 1194 LLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE-ELVVEY 1370
N+++ I E++ Y + PED + K L+ + F D I+G + V
Sbjct: 295 NFRNKLQGQLLSIEHEVEAYKNFKPEDPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTL 354
Query: 1371 ECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIK 1550
E K+ F + + + ++I G F FE I+K
Sbjct: 355 ELSGGAKINRIFHERFPFEIVKMEFNEKELRREISYAIKNIHGIRTGLFTPDMAFEAIVK 414
Query: 1551 KQVSVLEEPAVDMLHTV 1601
KQ+ L+ P++ + V
Sbjct: 415 KQIVKLKGPSLKSVDLV 431
>ref|NP_001039959.1| dynamin-1-like protein [Bos taurus].
Length = 749
Score = 181 bits (460), Expect = 2e-45
Identities = 150/468 (32%), Positives = 229/468 (48%), Gaps = 35/468 (7%)
Frame = +3
Query: 372 LALPAIAVIGDQSSGKSSVLEALSG-VALPRGSGIVTRCPXXXXXXXXXNEE-------- 524
+ LP I V+G QSSGKSSVLE+L G LPRG+GIVTR P E+
Sbjct: 23 IQLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVAPEDKRKTTGEE 82
Query: 525 ------------------DEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISH 650
+EW GK + +++ +D ++ +E+ I+G G+S
Sbjct: 83 NDPATWKNSRHLSKGVEAEEW-GKFLHTKNKL-YTDFDEIRQEIENETERISGNNKGVSP 140
Query: 651 ELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPC 830
E I L++ SP+V +LTL+DLPG+T+V VG+QP DIE QI+ LI ++I +I L V
Sbjct: 141 EPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAA 200
Query: 831 NVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVK 1010
N D+AT+EAL++++EVDP+G RT+ ++TK DL+D GT+ +DV V K G + V
Sbjct: 201 NTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTD--AMDVLMGRVIPVKLGIIGVV 258
Query: 1011 CRGQQDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTL 1190
R Q DI ++ S+ +++ E AF + + L R LA L L+ HI L
Sbjct: 259 NRSQLDINNKKSVTDSIRDEYAFLQK--KYPSL--ANRNGTKYLARTLNRLLMHHIRDCL 314
Query: 1191 PLLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEY 1370
P L+ +I + L YG + +D+S + LI K F ++ I+G +E
Sbjct: 315 PELKTRINVLAAQYQSLLNSYGEPV-DDKSATLLQLITK---FATEYCNTIEGTAKYIET 370
Query: 1371 E-----CRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTF 1535
R+ F + V+ G + I I G FV +F
Sbjct: 371 SELCGGARICYIFHETFGRTLESVDP--LGGLNTI--DILTAIRNATGPRPALFVPEVSF 426
Query: 1536 ETIIKKQVSVLEEPA---VDMLHTVTDLVRLAFTDVSETNFNEFFNLH 1670
E ++K+Q+ LEEP+ V+++H + ++ S F LH
Sbjct: 427 ELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLH 474
>ref|NP_001179890.1| dynamin-like 120 kDa protein, mitochondrial [Bos taurus].
Length = 997
Score = 94.7 bits (234), Expect = 3e-19
Identities = 90/333 (27%), Positives = 146/333 (43%), Gaps = 7/333 (2%)
Frame = +3
Query: 111 QRHSVKEKEGTFQLN*S--RKKMVYSNCESKEPDSVSASNHLLLNGNDELVEKSHKTGPE 284
Q+ V +KE QL ++ Y + L+L +D+ + H +
Sbjct: 242 QKRKVSDKEKIDQLQEELLHTQLKYQRILERLEKENKELRKLVLQKDDKGI---HHRKLK 298
Query: 285 NNLYSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVAL-PR 461
+L Y E +D++ A QD LP + V+GDQS+GK+SVLE ++ + PR
Sbjct: 299 KSLIDMYSE----VLDVLSDYDASYNTQD-HLPRVVVVGDQSAGKTSVLEMIAQARIFPR 353
Query: 462 GSG-IVTRCPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGV 638
GSG ++TR P + +K D E D + + E+ EG
Sbjct: 354 GSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKE-EDLAALRHEIELRMRKNVKEGC 412
Query: 639 GISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLV 818
+S E ISL V P + + L+DLPG+ D + I S+ K Y+ I L
Sbjct: 413 TVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILC 472
Query: 819 VVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKG--TEDKIVDVARNLVFHPKK 992
+ +VD + + ++DP G RTI +LTK DL +K + +I + +F K
Sbjct: 473 IQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVTSPSRIQQIIEGKLFPMKA 532
Query: 993 -GYMIVKCRGQQDIQDQLSLAKALQKEQAFFEN 1088
GY V G+ + + + + ++E FF+N
Sbjct: 533 LGYFAV-VTGKGNSSESIEAIRDYEEE--FFQN 562
>ref|XP_002684877.1| PREDICTED: optic atrophy 1 homolog [Bos taurus].
Length = 997
Score = 94.7 bits (234), Expect = 3e-19
Identities = 90/333 (27%), Positives = 146/333 (43%), Gaps = 7/333 (2%)
Frame = +3
Query: 111 QRHSVKEKEGTFQLN*S--RKKMVYSNCESKEPDSVSASNHLLLNGNDELVEKSHKTGPE 284
Q+ V +KE QL ++ Y + L+L +D+ + H +
Sbjct: 242 QKRKVSDKEKIDQLQEELLHTQLKYQRILERLEKENKELRKLVLQKDDKGI---HHRKLK 298
Query: 285 NNLYSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVAL-PR 461
+L Y E +D++ A QD LP + V+GDQS+GK+SVLE ++ + PR
Sbjct: 299 KSLIDMYSE----VLDVLSDYDASYNTQD-HLPRVVVVGDQSAGKTSVLEMIAQARIFPR 353
Query: 462 GSG-IVTRCPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGV 638
GSG ++TR P + +K D E D + + E+ EG
Sbjct: 354 GSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKE-EDLAALRHEIELRMRKNVKEGC 412
Query: 639 GISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLV 818
+S E ISL V P + + L+DLPG+ D + I S+ K Y+ I L
Sbjct: 413 TVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILC 472
Query: 819 VVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKG--TEDKIVDVARNLVFHPKK 992
+ +VD + + ++DP G RTI +LTK DL +K + +I + +F K
Sbjct: 473 IQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVTSPSRIQQIIEGKLFPMKA 532
Query: 993 -GYMIVKCRGQQDIQDQLSLAKALQKEQAFFEN 1088
GY V G+ + + + + ++E FF+N
Sbjct: 533 LGYFAV-VTGKGNSSESIEAIRDYEEE--FFQN 562
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 81,953,180
Number of extensions: 1972363
Number of successful extensions: 7124
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7093
Number of HSP's successfully gapped: 8
Length of query: 828
Length of database: 17,681,374
Length adjustment: 111
Effective length of query: 717
Effective length of database: 14,008,606
Effective search space: 10044170502
Effective search space used: 10044170502
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000493
(2486 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003134.1| interferon-induced GTP-binding protein Mx1 [... 902 0.0
Alignment gi|NP_001003133.1| interferon-induced GTP-binding protein Mx2 [... 719 0.0
Alignment gi|XP_867906.1| PREDICTED: similar to Dynamin-2 (Dynamin UDNM) ... 236 8e-62
Alignment gi|XP_867977.1| PREDICTED: similar to dynamin 2 isoform 2 isofo... 235 1e-61
Alignment gi|XP_868105.1| PREDICTED: similar to dynamin 2 isoform 2 isofo... 235 2e-61
Alignment gi|XP_868098.1| PREDICTED: similar to dynamin 2 isoform 4 isofo... 235 2e-61
Alignment gi|XP_867921.1| PREDICTED: similar to dynamin 2 isoform 2 isofo... 235 2e-61
Alignment gi|XP_868023.1| PREDICTED: similar to dynamin 2 isoform 2 isofo... 233 5e-61
Alignment gi|XP_868019.1| PREDICTED: similar to dynamin 2 isoform 2 isofo... 233 5e-61
Alignment gi|NP_001124521.1| dynamin-1 [Canis lupus familiaris]. 233 9e-61
>ref|NP_001003134.1| interferon-induced GTP-binding protein Mx1 [Canis lupus familiaris].
Length = 657
Score = 902 bits (2331), Expect = 0.0
Identities = 470/652 (72%), Positives = 530/652 (81%)
Frame = +3
Query: 183 NCESKEPDSVSASNHLLLNGNDELVEKSHKTGPENNLYSQYEEKVRPCIDLIDSLRALGV 362
N + K DS NH+LLNG + EK+ G N+L SQYEEKVRPCIDLIDSLRALGV
Sbjct: 3 NSQGKITDSNPVPNHVLLNGLTDKAEKNQGIG--NSLCSQYEEKVRPCIDLIDSLRALGV 60
Query: 363 EQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPXXXXXXXXXNEEDEWKGK 542
EQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP NE DEW+GK
Sbjct: 61 EQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLINE-DEWRGK 119
Query: 543 VSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDLPGIT 722
VSY+D+E+E+SD S+VE E++ AQ AIAGEG GISHELISLEVSSPHVPDLTLIDLPGIT
Sbjct: 120 VSYQDTEMEISDPSEVEVEINKAQDAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGIT 179
Query: 723 RVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEGDRTI 902
RVAVGNQP DI Q K LI+KYI KQETINLVVVPCNVDIATTEAL MAQEVDP+GDRTI
Sbjct: 180 RVAVGNQPADIGRQTKQLIRKYILKQETINLVVVPCNVDIATTEALSMAQEVDPDGDRTI 239
Query: 903 GILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQLSLAKALQKEQAFF 1082
GILTKPDLVD+GTE K+VDVA+NLV H KKGYMIVKCRGQQDIQDQ+SLA+ALQKE+ FF
Sbjct: 240 GILTKPDLVDRGTEGKVVDVAQNLVCHLKKGYMIVKCRGQQDIQDQVSLAEALQKEKDFF 299
Query: 1083 ENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQKYGSD 1262
E+H HFR LLEEGRAT+P LAE+LTSELI HICKTLPLLENQIKE+H+KITEELQKYGSD
Sbjct: 300 EDHPHFRVLLEEGRATVPNLAEKLTSELITHICKTLPLLENQIKENHEKITEELQKYGSD 359
Query: 1263 IPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNEFCKWSAVVEKNFK 1442
+PEDE KMFFLIDK++AFN DI++LIQGEE V E E RLFTK+RNEF KWSAV+EK F+
Sbjct: 360 VPEDEHEKMFFLIDKLNAFNQDISSLIQGEESVGEDESRLFTKIRNEFHKWSAVIEKKFQ 419
Query: 1443 NGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDLVRLA 1622
GY AI KQ++ FEN+YRGRELPGFVNYKTFE IIK+Q+ LEEPAVDMLHT+TD+V++A
Sbjct: 420 RGYKAIYKQMEKFENRYRGRELPGFVNYKTFEIIIKQQIKELEEPAVDMLHTITDMVQVA 479
Query: 1623 FTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYRGALQ 1802
F D+S+ NF+EFFNL+RT KSKIEDIK E EKEAE SIRLHFQMEQIVYCQD VY+ ALQ
Sbjct: 480 FGDISKANFDEFFNLYRTTKSKIEDIKFELEKEAEKSIRLHFQMEQIVYCQDHVYQRALQ 539
Query: 1803 XXXXXXXXXXXXXXSNQYFLXXXXXXXXXXIAEIFQHLIAYHQEVGKRISSHIPLIIQFF 1982
++ ++EI +HL+AY QE RISSHIPLIIQ+F
Sbjct: 540 RVREKDSDEEKKKKTSS-MSHDEVSSVNISLSEILEHLLAYRQEATNRISSHIPLIIQYF 598
Query: 1983 ILRTFGXXXXXXXXXXXXNKDQYDWLLRERSDTSDKRKFLKERLMRLTQARQ 2138
IL+ +G +KD Y WLL+ERSDTSDKRKFLKERL RL QAR+
Sbjct: 599 ILQVYGQKLQNGMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLARLAQARR 650
>ref|NP_001003133.1| interferon-induced GTP-binding protein Mx2 [Canis lupus familiaris].
Length = 711
Score = 719 bits (1856), Expect = 0.0
Identities = 379/667 (56%), Positives = 478/667 (71%), Gaps = 7/667 (1%)
Frame = +3
Query: 159 SRKKMVYSNCESKEPDSVSASNHL-LLNGNDELVEKSHKT----GPENNLYSQYEEKVRP 323
+R+ M NC+ D V + LL N + +E S GPE +LYSQYE+KVRP
Sbjct: 40 ARQMMYPPNCQVGVQDPVYLAKEFNLLTLNPQQLEGSRHQQMAKGPEKSLYSQYEQKVRP 99
Query: 324 CIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPXXXXX 503
CIDL+DSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP
Sbjct: 100 CIDLVDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 159
Query: 504 XXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPH 683
++ W+G++SYR +E++ D SQVEKE+ AQ IAG+G+GISHELISLE++SP
Sbjct: 160 KRDPHKA--WRGRISYRKTELQFQDPSQVEKEIRQAQNIIAGQGLGISHELISLEITSPE 217
Query: 684 VPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALR 863
VPDLTLIDLPGITRVAVGNQP DI QIK+LIK YI KQETINLVVVPCNVDIATTEAL
Sbjct: 218 VPDLTLIDLPGITRVAVGNQPQDIGVQIKALIKNYIQKQETINLVVVPCNVDIATTEALS 277
Query: 864 MAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQL 1043
MAQEVDP GDRTIG+LTKPDLVD+GTE +V+VA+NL +H +KGYMIV+CRGQ++I +QL
Sbjct: 278 MAQEVDPNGDRTIGVLTKPDLVDRGTEKTVVNVAQNLTYHLQKGYMIVRCRGQEEITNQL 337
Query: 1044 SLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESH 1223
SLA+A +KE+ FF+ H +FR LLEEG+AT+PCLAERLT ELI+HI K+LPLLE QI+ESH
Sbjct: 338 SLAEATEKERMFFQTHPYFRALLEEGKATVPCLAERLTKELILHINKSLPLLEKQIRESH 397
Query: 1224 QKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNE 1403
Q+ T+EL + G IP +E+ KMFFLI+KI FN DI LI+GEE+V + E RL+ K+R E
Sbjct: 398 QRATDELHQCGDSIPSNEADKMFFLIEKIKLFNQDIDKLIEGEEIVKKNETRLYNKIREE 457
Query: 1404 FCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEPAV 1583
F W+ V+ N + + + +++ ++E QYRG+EL GFVNYKTFETI+ + + L EPA+
Sbjct: 458 FEHWALVLTANTQKVKNIVSEEVSVYEKQYRGKELLGFVNYKTFETIVHQYIEQLVEPAL 517
Query: 1584 DMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQI 1763
ML ++V AFTD ++ +F+ F NL +T ++KIEDIK Q + AE IRL F+MEQ+
Sbjct: 518 TMLRKTIEIVWQAFTDTAKKHFSVFSNLSQTIQNKIEDIKTRQAETAENLIRLQFRMEQL 577
Query: 1764 VYCQDQVYRGALQXXXXXXXXXXXXXXSNQY--FLXXXXXXXXXXIAEIFQHLIAYHQEV 1937
VYCQDQ+Y L+ + F EI HL AY E
Sbjct: 578 VYCQDQIYSVVLRKVRKEVFNPAGKAAQDLQLKFPFPKDLPSMSSNDEIGVHLNAYFLET 637
Query: 1938 GKRISSHIPLIIQFFILRTFGXXXXXXXXXXXXNKDQYDWLLRERSDTSDKRKFLKERLM 2117
KR+++ IP IIQ+F+L+ G ++QY WLL+E +DTS KR+FLKE++
Sbjct: 638 SKRLANQIPFIIQYFVLQENGSCLQKAMMQILQEREQYSWLLQEHADTSAKRRFLKEKIY 697
Query: 2118 RLTQARQ 2138
RL QAR+
Sbjct: 698 RLAQARR 704
>ref|XP_867906.1| PREDICTED: similar to Dynamin-2 (Dynamin UDNM) isoform 4 [Canis
familiaris].
Length = 875
Score = 236 bits (602), Expect = 8e-62
Identities = 164/492 (33%), Positives = 262/492 (53%), Gaps = 8/492 (1%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ++G L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELIS 662
P W G+ +Y + +D +V +E+ A + G GIS I+
Sbjct: 67 RPLILQLIFSKTGTAAW-GETAYSPGSV-FTDFDEVRQEIEAETDRVTGTNKGISPVPIN 124
Query: 663 LEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDI 842
L V SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I ++ ++ L V P N+D+
Sbjct: 125 LRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDL 184
Query: 843 ATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQ 1022
A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + D+ N + ++GY+ V R Q
Sbjct: 185 ANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DILENKLLPLRRGYIGVVNRSQ 242
Query: 1023 QDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLE 1202
+DI+ + + AL E+ FF +H +R + + R P L + L +L HI ++LP L
Sbjct: 243 KDIEGKKDIRAALAAERKFFLSHPAYRHMAD--RMGTPHLQKTLNQQLTNHIRESLPALR 300
Query: 1203 NQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQG-----EELVVE 1367
++++ + +E+++Y + P+D + K L+ + F D I+G + L +
Sbjct: 301 SKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELS 360
Query: 1368 YECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETII 1547
R+ F +E + K+ + ++I G F FE I+
Sbjct: 361 GGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIHGVRTGLFTPDLAFEAIV 416
Query: 1548 KKQVSVLEEPAVDMLH-TVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEA 1724
KKQV L+EP + + + +L+ S+ N + L + + E+E
Sbjct: 417 KKQVVKLKEPCLKCVDLVIQELINTVRQCTSK--LNSYPRLREETERIVTTYIREREGRT 474
Query: 1725 ETSIRLHFQMEQ 1760
+ I L +EQ
Sbjct: 475 KDQILLLIDIEQ 486
>ref|XP_867977.1| PREDICTED: similar to dynamin 2 isoform 2 isoform 16 [Canis
familiaris].
Length = 892
Score = 235 bits (600), Expect = 1e-61
Identities = 165/506 (32%), Positives = 261/506 (51%), Gaps = 22/506 (4%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ++G L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEWKGKVSYRDSEIEL---------------SDASQVEKEVSAAQI 617
P E G V +R L +D +V +E+ A
Sbjct: 67 RPLILQLIFSKTESRTGLGPVGFRSPFSSLPGEYAEFLHCKSKKFTDFDEVRQEIEAETD 126
Query: 618 AIAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICK 797
+ G GIS I+L V SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I +
Sbjct: 127 RVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISR 186
Query: 798 QETINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLV 977
+ ++ L V P N+D+A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + D+ N +
Sbjct: 187 ESSLILAVTPANMDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DILENKL 244
Query: 978 FHPKKGYMIVKCRGQQDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLT 1157
++GY+ V R Q+DI+ + + AL E+ FF +H +R + + R P L + L
Sbjct: 245 LPLRRGYIGVVNRSQKDIEGKKDIRAALAAERKFFLSHPAYRHMAD--RMGTPHLQKTLN 302
Query: 1158 SELIMHICKTLPLLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITA 1337
+L HI ++LP L ++++ + +E+++Y + P+D + K L+ + F D
Sbjct: 303 QQLTNHIRESLPALRSKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEK 362
Query: 1338 LIQG-----EELVVEYECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGR 1502
I+G + L + R+ F +E + K+ + ++I G
Sbjct: 363 RIEGSGDQVDTLELSGGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIHGV 418
Query: 1503 ELPGFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAK 1682
F FE I+KKQ+ L+EP++ + V + +E N + L +
Sbjct: 419 RTGLFTPDMAFEAIVKKQIVKLKEPSLKCVDLVVSELATVIKKCAE-KLNSYPRLREETE 477
Query: 1683 SKIEDIKLEQEKEAETSIRLHFQMEQ 1760
+ E+E + I L +EQ
Sbjct: 478 RIVTTYIREREGRTKDQILLLIDIEQ 503
>ref|XP_868105.1| PREDICTED: similar to dynamin 2 isoform 2 isoform 44 [Canis
familiaris].
Length = 872
Score = 235 bits (599), Expect = 2e-61
Identities = 163/491 (33%), Positives = 260/491 (52%), Gaps = 7/491 (1%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ++G L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELIS 662
P E E+ S + +D +V +E+ A + G GIS I+
Sbjct: 67 RPLILQLIFSKTEYAEFLHCKSKK-----FTDFDEVRQEIEAETDRVTGTNKGISPVPIN 121
Query: 663 LEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDI 842
L V SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I ++ ++ L V P N+D+
Sbjct: 122 LRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDL 181
Query: 843 ATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQ 1022
A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + D+ N + ++GY+ V R Q
Sbjct: 182 ANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DILENKLLPLRRGYIGVVNRSQ 239
Query: 1023 QDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLE 1202
+DI+ + + AL E+ FF +H +R + + R P L + L +L HI ++LP L
Sbjct: 240 KDIEGKKDIRAALAAERKFFLSHPAYRHMAD--RMGTPHLQKTLNQQLTNHIRESLPALR 297
Query: 1203 NQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQG-----EELVVE 1367
++++ + +E+++Y + P+D + K L+ + F D I+G + L +
Sbjct: 298 SKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELS 357
Query: 1368 YECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETII 1547
R+ F +E + K+ + ++I G F FE I+
Sbjct: 358 GGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIHGVRTGLFTPDMAFEAIV 413
Query: 1548 KKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAE 1727
KKQ+ L+EP++ + V + +E N + L + + E+E +
Sbjct: 414 KKQIVKLKEPSLKCVDLVVSELATVIKKCAE-KLNSYPRLREETERIVTTYIREREGRTK 472
Query: 1728 TSIRLHFQMEQ 1760
I L +EQ
Sbjct: 473 DQILLLIDIEQ 483
>ref|XP_868098.1| PREDICTED: similar to dynamin 2 isoform 4 isoform 42 [Canis
familiaris].
Length = 868
Score = 235 bits (599), Expect = 2e-61
Identities = 163/491 (33%), Positives = 260/491 (52%), Gaps = 7/491 (1%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ++G L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELIS 662
P E E+ S + +D +V +E+ A + G GIS I+
Sbjct: 67 RPLILQLIFSKTEYAEFLHCKSKK-----FTDFDEVRQEIEAETDRVTGTNKGISPVPIN 121
Query: 663 LEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDI 842
L V SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I ++ ++ L V P N+D+
Sbjct: 122 LRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDL 181
Query: 843 ATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQ 1022
A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + D+ N + ++GY+ V R Q
Sbjct: 182 ANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DILENKLLPLRRGYIGVVNRSQ 239
Query: 1023 QDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLE 1202
+DI+ + + AL E+ FF +H +R + + R P L + L +L HI ++LP L
Sbjct: 240 KDIEGKKDIRAALAAERKFFLSHPAYRHMAD--RMGTPHLQKTLNQQLTNHIRESLPALR 297
Query: 1203 NQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQG-----EELVVE 1367
++++ + +E+++Y + P+D + K L+ + F D I+G + L +
Sbjct: 298 SKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELS 357
Query: 1368 YECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETII 1547
R+ F +E + K+ + ++I G F FE I+
Sbjct: 358 GGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIHGVRTGLFTPDMAFEAIV 413
Query: 1548 KKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAE 1727
KKQ+ L+EP++ + V + +E N + L + + E+E +
Sbjct: 414 KKQIVKLKEPSLKCVDLVVSELATVIKKCAE-KLNSYPRLREETERIVTTYIREREGRTK 472
Query: 1728 TSIRLHFQMEQ 1760
I L +EQ
Sbjct: 473 DQILLLIDIEQ 483
>ref|XP_867921.1| PREDICTED: similar to dynamin 2 isoform 2 isoform 6 [Canis
familiaris].
Length = 876
Score = 235 bits (599), Expect = 2e-61
Identities = 163/491 (33%), Positives = 260/491 (52%), Gaps = 7/491 (1%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ++G L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELIS 662
P E E+ S + +D +V +E+ A + G GIS I+
Sbjct: 67 RPLILQLIFSKTEYAEFLHCKSKK-----FTDFDEVRQEIEAETDRVTGTNKGISPVPIN 121
Query: 663 LEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDI 842
L V SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I ++ ++ L V P N+D+
Sbjct: 122 LRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDL 181
Query: 843 ATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQ 1022
A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + D+ N + ++GY+ V R Q
Sbjct: 182 ANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DILENKLLPLRRGYIGVVNRSQ 239
Query: 1023 QDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLE 1202
+DI+ + + AL E+ FF +H +R + + R P L + L +L HI ++LP L
Sbjct: 240 KDIEGKKDIRAALAAERKFFLSHPAYRHMAD--RMGTPHLQKTLNQQLTNHIRESLPALR 297
Query: 1203 NQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQG-----EELVVE 1367
++++ + +E+++Y + P+D + K L+ + F D I+G + L +
Sbjct: 298 SKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELS 357
Query: 1368 YECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETII 1547
R+ F +E + K+ + ++I G F FE I+
Sbjct: 358 GGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIHGVRTGLFTPDMAFEAIV 413
Query: 1548 KKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAE 1727
KKQ+ L+EP++ + V + +E N + L + + E+E +
Sbjct: 414 KKQIVKLKEPSLKCVDLVVSELATVIKKCAE-KLNSYPRLREETERIVTTYIREREGRTK 472
Query: 1728 TSIRLHFQMEQ 1760
I L +EQ
Sbjct: 473 DQILLLIDIEQ 483
>ref|XP_868023.1| PREDICTED: similar to dynamin 2 isoform 2 isoform 26 [Canis
familiaris].
Length = 894
Score = 233 bits (595), Expect = 5e-61
Identities = 166/508 (32%), Positives = 262/508 (51%), Gaps = 24/508 (4%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ++G L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDE---WKGKVSYRDSEIE--------------LSDASQVEKEVSAA 611
P E E G V + E E +D +V +E+ A
Sbjct: 67 RPLILQLIFSKTEPKERPGGSGAVHCKGPEAEDLKYAEFLHCKSKKFTDFDEVRQEIEAE 126
Query: 612 QIAIAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYI 791
+ G GIS I+L V SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I
Sbjct: 127 TDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFI 186
Query: 792 CKQETINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARN 971
++ ++ L V P N+D+A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + D+ N
Sbjct: 187 SRESSLILAVTPANMDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DILEN 244
Query: 972 LVFHPKKGYMIVKCRGQQDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAER 1151
+ ++GY+ V R Q+DI+ + + AL E+ FF +H +R + + R P L +
Sbjct: 245 KLLPLRRGYIGVVNRSQKDIEGKKDIRAALAAERKFFLSHPAYRHMAD--RMGTPHLQKT 302
Query: 1152 LTSELIMHICKTLPLLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDI 1331
L +L HI ++LP L ++++ + +E+++Y + P+D + K L+ + F D
Sbjct: 303 LNQQLTNHIRESLPALRSKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDF 362
Query: 1332 TALIQG-----EELVVEYECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYR 1496
I+G + L + R+ F +E + K+ + ++I
Sbjct: 363 EKRIEGSGDQVDTLELSGGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIH 418
Query: 1497 GRELPGFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRT 1676
G F FE I+KKQ+ L+EP++ + V + +E N + L
Sbjct: 419 GVRTGLFTPDMAFEAIVKKQIVKLKEPSLKCVDLVVSELATVIKKCAE-KLNSYPRLREE 477
Query: 1677 AKSKIEDIKLEQEKEAETSIRLHFQMEQ 1760
+ + E+E + I L +EQ
Sbjct: 478 TERIVTTYIREREGRTKDQILLLIDIEQ 505
>ref|XP_868019.1| PREDICTED: similar to dynamin 2 isoform 2 isoform 25 [Canis
familiaris].
Length = 874
Score = 233 bits (595), Expect = 5e-61
Identities = 162/491 (32%), Positives = 261/491 (53%), Gaps = 7/491 (1%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ++G L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELIS 662
P DE+ + + + +D +V +E+ A + G GIS I+
Sbjct: 67 RPLILQLIFSKTA-DEYAEFLHCKSKKF--TDFDEVRQEIEAETDRVTGTNKGISPVPIN 123
Query: 663 LEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDI 842
L V SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I ++ ++ L V P N+D+
Sbjct: 124 LRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDL 183
Query: 843 ATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQ 1022
A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + D+ N + ++GY+ V R Q
Sbjct: 184 ANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DILENKLLPLRRGYIGVVNRSQ 241
Query: 1023 QDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLE 1202
+DI+ + + AL E+ FF +H +R + + R P L + L +L HI ++LP L
Sbjct: 242 KDIEGKKDIRAALAAERKFFLSHPAYRHMAD--RMGTPHLQKTLNQQLTNHIRESLPALR 299
Query: 1203 NQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQG-----EELVVE 1367
++++ + +E+++Y + P+D + K L+ + F D I+G + L +
Sbjct: 300 SKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELS 359
Query: 1368 YECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETII 1547
R+ F +E + K+ + ++I G F FE I+
Sbjct: 360 GGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIHGVRTGLFTPDMAFEAIV 415
Query: 1548 KKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAE 1727
KKQ+ L+EP++ + V + +E N + L + + E+E +
Sbjct: 416 KKQIVKLKEPSLKCVDLVVSELATVIKKCAE-KLNSYPRLREETERIVTTYIREREGRTK 474
Query: 1728 TSIRLHFQMEQ 1760
I L +EQ
Sbjct: 475 DQILLLIDIEQ 485
>ref|NP_001124521.1| dynamin-1 [Canis lupus familiaris].
Length = 864
Score = 233 bits (593), Expect = 9e-61
Identities = 156/428 (36%), Positives = 232/428 (54%), Gaps = 8/428 (1%)
Frame = +3
Query: 333 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPXXXXXXX 509
L D+ A+G DL LP IAV+G QS+GKSSVLE G LPRGSGIVTR P
Sbjct: 16 LQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75
Query: 510 XXNEEDEW---KGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSP 680
E E+ KGK + +D +V E+ A + G GIS I+L V SP
Sbjct: 76 ATTEYAEFLHCKGK--------KFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSP 127
Query: 681 HVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEAL 860
V +LTL+DLPG+T+V VG+QP DIE+QI+ ++ +++ K+ + L V P N D+A ++AL
Sbjct: 128 QVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187
Query: 861 RMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQ 1040
++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q+DI +
Sbjct: 188 KVAKEVDPQGQRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQKDIDGK 245
Query: 1041 LSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKES 1220
++ AL E FF +H +R L + R P L + L +L HI TLP L N+++
Sbjct: 246 KDISAALAAEXKFFLSHPSYRHLAD--RMGTPYLQKVLNQQLTNHIRDTLPGLRNRLQSQ 303
Query: 1221 HQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE-ELVVEYECRLFTKMR 1397
I +E+++Y + P+D + K L+ + F D I+G + + YE ++
Sbjct: 304 LLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARIN 363
Query: 1398 NEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEP 1577
F + + + ++I G F FETI+KKQV + EP
Sbjct: 364 RIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDMAFETIVKKQVKKIREP 423
Query: 1578 ---AVDML 1592
VDM+
Sbjct: 424 CLKCVDMV 431
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 85,664,304
Number of extensions: 2039022
Number of successful extensions: 7824
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 7594
Number of HSP's successfully gapped: 71
Length of query: 828
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 717
Effective length of database: 15,174,208
Effective search space: 10879907136
Effective search space used: 10879907136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000493
(2486 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171517.1| interferon-induced GTP-binding protein Mx1 [... 932 0.0
Alignment gi|NP_001138397.1| interferon-induced GTP-binding protein Mx1 [... 932 0.0
Alignment gi|NP_002453.2| interferon-induced GTP-binding protein Mx1 [Hom... 932 0.0
Alignment gi|NP_002454.1| interferon-induced GTP-binding protein Mx2 [Hom... 707 0.0
Alignment gi|NP_001005336.1| dynamin-1 isoform 2 [Homo sapiens]. 236 7e-62
Alignment gi|NP_004399.2| dynamin-1 isoform 1 [Homo sapiens]. 236 7e-62
Alignment gi|NP_001005361.1| dynamin-2 isoform 2 [Homo sapiens]. 234 3e-61
Alignment gi|NP_001005362.1| dynamin-2 isoform 4 [Homo sapiens]. 234 3e-61
Alignment gi|NP_001005360.1| dynamin-2 isoform 1 [Homo sapiens]. 233 8e-61
Alignment gi|NP_004936.2| dynamin-2 isoform 3 [Homo sapiens]. 233 8e-61
>ref|NP_001171517.1| interferon-induced GTP-binding protein Mx1 [Homo sapiens].
Length = 662
Score = 932 bits (2408), Expect = 0.0
Identities = 477/656 (72%), Positives = 544/656 (82%)
Frame = +3
Query: 171 MVYSNCESKEPDSVSASNHLLLNGNDELVEKSHKTGPENNLYSQYEEKVRPCIDLIDSLR 350
MV S + + D +AS+ LLLNG+ + +K+ + ENNL SQYEEKVRPCIDLIDSLR
Sbjct: 1 MVVSEVDIAKADPAAASHPLLLNGDATVAQKNPGSVAENNLCSQYEEKVRPCIDLIDSLR 60
Query: 351 ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPXXXXXXXXXNEEDE 530
ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP NE D+
Sbjct: 61 ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNE-DK 119
Query: 531 WKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDL 710
W+GKVSY+D EIE+SDAS+VEKE++ AQ AIAGEG+GISHELI+LE+SS VPDLTLIDL
Sbjct: 120 WRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDL 179
Query: 711 PGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEG 890
PGITRVAVGNQP DI Y+IK+LIKKYI +QETI+LVVVP NVDIATTEAL MAQEVDPEG
Sbjct: 180 PGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEG 239
Query: 891 DRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQLSLAKALQKE 1070
DRTIGILTKPDLVDKGTEDK+VDV RNLVFH KKGYMIVKCRGQQ+IQDQLSL++ALQ+E
Sbjct: 240 DRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQRE 299
Query: 1071 QAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQK 1250
+ FFENH +FRDLLEEG+AT+PCLAE+LTSELI HICK+LPLLENQIKE+HQ+ITEELQK
Sbjct: 300 KIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQK 359
Query: 1251 YGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNEFCKWSAVVE 1430
YG DIPEDE+ KMFFLIDK++AFN DITAL+QGEE V E + RLFT++R+EF KWS ++E
Sbjct: 360 YGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIE 419
Query: 1431 KNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDL 1610
NF+ G+ + ++IQ FENQYRGRELPGFVNY+TFETI+K+Q+ LEEPAVDMLHTVTD+
Sbjct: 420 NNFQEGHKILSRKIQKFENQYRGRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDM 479
Query: 1611 VRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYR 1790
VRLAFTDVS NF EFFNLHRTAKSKIEDI+ EQE+E E IRLHFQMEQIVYCQDQVYR
Sbjct: 480 VRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYCQDQVYR 539
Query: 1791 GALQXXXXXXXXXXXXXXSNQYFLXXXXXXXXXXIAEIFQHLIAYHQEVGKRISSHIPLI 1970
GALQ S + + EIFQHL+AYHQE KRISSHIPLI
Sbjct: 540 GALQKVREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLI 599
Query: 1971 IQFFILRTFGXXXXXXXXXXXXNKDQYDWLLRERSDTSDKRKFLKERLMRLTQARQ 2138
IQFF+L+T+G +KD Y WLL+ERSDTSDKRKFLKERL RLTQAR+
Sbjct: 600 IQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLARLTQARR 655
>ref|NP_001138397.1| interferon-induced GTP-binding protein Mx1 [Homo sapiens].
Length = 662
Score = 932 bits (2408), Expect = 0.0
Identities = 477/656 (72%), Positives = 544/656 (82%)
Frame = +3
Query: 171 MVYSNCESKEPDSVSASNHLLLNGNDELVEKSHKTGPENNLYSQYEEKVRPCIDLIDSLR 350
MV S + + D +AS+ LLLNG+ + +K+ + ENNL SQYEEKVRPCIDLIDSLR
Sbjct: 1 MVVSEVDIAKADPAAASHPLLLNGDATVAQKNPGSVAENNLCSQYEEKVRPCIDLIDSLR 60
Query: 351 ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPXXXXXXXXXNEEDE 530
ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP NE D+
Sbjct: 61 ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNE-DK 119
Query: 531 WKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDL 710
W+GKVSY+D EIE+SDAS+VEKE++ AQ AIAGEG+GISHELI+LE+SS VPDLTLIDL
Sbjct: 120 WRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDL 179
Query: 711 PGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEG 890
PGITRVAVGNQP DI Y+IK+LIKKYI +QETI+LVVVP NVDIATTEAL MAQEVDPEG
Sbjct: 180 PGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEG 239
Query: 891 DRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQLSLAKALQKE 1070
DRTIGILTKPDLVDKGTEDK+VDV RNLVFH KKGYMIVKCRGQQ+IQDQLSL++ALQ+E
Sbjct: 240 DRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQRE 299
Query: 1071 QAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQK 1250
+ FFENH +FRDLLEEG+AT+PCLAE+LTSELI HICK+LPLLENQIKE+HQ+ITEELQK
Sbjct: 300 KIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQK 359
Query: 1251 YGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNEFCKWSAVVE 1430
YG DIPEDE+ KMFFLIDK++AFN DITAL+QGEE V E + RLFT++R+EF KWS ++E
Sbjct: 360 YGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIE 419
Query: 1431 KNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDL 1610
NF+ G+ + ++IQ FENQYRGRELPGFVNY+TFETI+K+Q+ LEEPAVDMLHTVTD+
Sbjct: 420 NNFQEGHKILSRKIQKFENQYRGRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDM 479
Query: 1611 VRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYR 1790
VRLAFTDVS NF EFFNLHRTAKSKIEDI+ EQE+E E IRLHFQMEQIVYCQDQVYR
Sbjct: 480 VRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYCQDQVYR 539
Query: 1791 GALQXXXXXXXXXXXXXXSNQYFLXXXXXXXXXXIAEIFQHLIAYHQEVGKRISSHIPLI 1970
GALQ S + + EIFQHL+AYHQE KRISSHIPLI
Sbjct: 540 GALQKVREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLI 599
Query: 1971 IQFFILRTFGXXXXXXXXXXXXNKDQYDWLLRERSDTSDKRKFLKERLMRLTQARQ 2138
IQFF+L+T+G +KD Y WLL+ERSDTSDKRKFLKERL RLTQAR+
Sbjct: 600 IQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLARLTQARR 655
>ref|NP_002453.2| interferon-induced GTP-binding protein Mx1 [Homo sapiens].
Length = 662
Score = 932 bits (2408), Expect = 0.0
Identities = 477/656 (72%), Positives = 544/656 (82%)
Frame = +3
Query: 171 MVYSNCESKEPDSVSASNHLLLNGNDELVEKSHKTGPENNLYSQYEEKVRPCIDLIDSLR 350
MV S + + D +AS+ LLLNG+ + +K+ + ENNL SQYEEKVRPCIDLIDSLR
Sbjct: 1 MVVSEVDIAKADPAAASHPLLLNGDATVAQKNPGSVAENNLCSQYEEKVRPCIDLIDSLR 60
Query: 351 ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPXXXXXXXXXNEEDE 530
ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP NE D+
Sbjct: 61 ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNE-DK 119
Query: 531 WKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDL 710
W+GKVSY+D EIE+SDAS+VEKE++ AQ AIAGEG+GISHELI+LE+SS VPDLTLIDL
Sbjct: 120 WRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDL 179
Query: 711 PGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEG 890
PGITRVAVGNQP DI Y+IK+LIKKYI +QETI+LVVVP NVDIATTEAL MAQEVDPEG
Sbjct: 180 PGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEG 239
Query: 891 DRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQLSLAKALQKE 1070
DRTIGILTKPDLVDKGTEDK+VDV RNLVFH KKGYMIVKCRGQQ+IQDQLSL++ALQ+E
Sbjct: 240 DRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQRE 299
Query: 1071 QAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQK 1250
+ FFENH +FRDLLEEG+AT+PCLAE+LTSELI HICK+LPLLENQIKE+HQ+ITEELQK
Sbjct: 300 KIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQK 359
Query: 1251 YGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNEFCKWSAVVE 1430
YG DIPEDE+ KMFFLIDK++AFN DITAL+QGEE V E + RLFT++R+EF KWS ++E
Sbjct: 360 YGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIE 419
Query: 1431 KNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDL 1610
NF+ G+ + ++IQ FENQYRGRELPGFVNY+TFETI+K+Q+ LEEPAVDMLHTVTD+
Sbjct: 420 NNFQEGHKILSRKIQKFENQYRGRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDM 479
Query: 1611 VRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYR 1790
VRLAFTDVS NF EFFNLHRTAKSKIEDI+ EQE+E E IRLHFQMEQIVYCQDQVYR
Sbjct: 480 VRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYCQDQVYR 539
Query: 1791 GALQXXXXXXXXXXXXXXSNQYFLXXXXXXXXXXIAEIFQHLIAYHQEVGKRISSHIPLI 1970
GALQ S + + EIFQHL+AYHQE KRISSHIPLI
Sbjct: 540 GALQKVREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLI 599
Query: 1971 IQFFILRTFGXXXXXXXXXXXXNKDQYDWLLRERSDTSDKRKFLKERLMRLTQARQ 2138
IQFF+L+T+G +KD Y WLL+ERSDTSDKRKFLKERL RLTQAR+
Sbjct: 600 IQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLARLTQARR 655
>ref|NP_002454.1| interferon-induced GTP-binding protein Mx2 [Homo sapiens].
Length = 715
Score = 707 bits (1824), Expect = 0.0
Identities = 373/642 (58%), Positives = 463/642 (72%), Gaps = 4/642 (0%)
Frame = +3
Query: 222 NHLLLNGNDELVEKSHKT--GPENNLYSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAV 395
N L LN +S GPENNLYSQYE+KVRPCIDLIDSLRALGVEQDLALPAIAV
Sbjct: 64 NFLTLNNQPPPGNRSQPRAMGPENNLYSQYEQKVRPCIDLIDSLRALGVEQDLALPAIAV 123
Query: 396 IGDQSSGKSSVLEALSGVALPRGSGIVTRCPXXXXXXXXXNEEDEWKGKVSYRDSEIELS 575
IGDQSSGKSSVLEALSGVALPRGSGIVTRCP E W G++SYR++E+EL
Sbjct: 124 IGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKQPCEA--WAGRISYRNTELELQ 181
Query: 576 DASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDI 755
D QVEKE+ AQ +AG G GISHELISLE++SP VPDLT+IDLPGITRVAV NQP DI
Sbjct: 182 DPGQVEKEIHKAQNVMAGNGRGISHELISLEITSPEVPDLTIIDLPGITRVAVDNQPRDI 241
Query: 756 EYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDK 935
QIK+LIKKYI +Q+TINLVVVPCNVDIATTEAL MA EVDPEGDRTIGILTKPDL+D+
Sbjct: 242 GLQIKALIKKYIQRQQTINLVVVPCNVDIATTEALSMAHEVDPEGDRTIGILTKPDLMDR 301
Query: 936 GTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQLSLAKALQKEQAFFENHAHFRDLLE 1115
GTE +++V RNL + KKGYMIVKCRGQQ+I ++LSLA+A +KE FF+ H +FR LLE
Sbjct: 302 GTEKSVMNVVRNLTYPLKKGYMIVKCRGQQEITNRLSLAEATKKEITFFQTHPYFRVLLE 361
Query: 1116 EGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQKYGSDIPEDESGKMFF 1295
EG AT+P LAERLT+ELIMHI K+LPLLE QI+ESHQK TEEL++ G+DIP E+ KMFF
Sbjct: 362 EGSATVPRLAERLTTELIMHIQKSLPLLEGQIRESHQKATEELRRCGADIPSQEADKMFF 421
Query: 1296 LIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQ 1475
LI+KI FN DI L++GEE+V E E RL+ K+R +F W ++ N + + I ++++
Sbjct: 422 LIEKIKMFNQDIEKLVEGEEVVRENETRLYNKIREDFKNWVGILATNTQKVKNIIHEEVE 481
Query: 1476 LFENQYRGRELPGFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNE 1655
+E QYRG+EL GFVNYKTFE I+ + + L EPA+ ML ++++ AF +V++ +F E
Sbjct: 482 KYEKQYRGKELLGFVNYKTFEIIVHQYIQQLVEPALSMLQKAMEIIQQAFINVAKKHFGE 541
Query: 1656 FFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYRGALQXXXXXXXXXXX 1835
FFNL++T +S IEDIK++ +AE I+L F+MEQ+V+CQDQ+Y L+
Sbjct: 542 FFNLNQTVQSTIEDIKVKHTAKAENMIQLQFRMEQMVFCQDQIYSVVLKKVREEIFNPLG 601
Query: 1836 XXXSNQYF--LXXXXXXXXXXIAEIFQHLIAYHQEVGKRISSHIPLIIQFFILRTFGXXX 2009
N EI HL AY E KR+++ IP IIQ+F+LR G
Sbjct: 602 TPSQNMKLNSHFPSNESSVSSFTEIGIHLNAYFLETSKRLANQIPFIIQYFMLRENGDSL 661
Query: 2010 XXXXXXXXXNKDQYDWLLRERSDTSDKRKFLKERLMRLTQAR 2135
K++Y WLL+E+S+T+ KR+ LKER+ RLTQAR
Sbjct: 662 QKAMMQILQEKNRYSWLLQEQSETATKRRILKERIYRLTQAR 703
>ref|NP_001005336.1| dynamin-1 isoform 2 [Homo sapiens].
Length = 851
Score = 236 bits (602), Expect = 7e-62
Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 8/428 (1%)
Frame = +3
Query: 333 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPXXXXXXX 509
L D+ A+G DL LP IAV+G QS+GKSSVLE G LPRGSGIVTR P
Sbjct: 16 LQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75
Query: 510 XXNEEDEW---KGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSP 680
E E+ KGK + +D +V E+ A + G GIS I+L V SP
Sbjct: 76 ATTEYAEFLHCKGK--------KFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSP 127
Query: 681 HVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEAL 860
HV +LTL+DLPG+T+V VG+QP DIE+QI+ ++ +++ K+ + L V P N D+A ++AL
Sbjct: 128 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187
Query: 861 RMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQ 1040
++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q+DI +
Sbjct: 188 KVAKEVDPQGQRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQKDIDGK 245
Query: 1041 LSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKES 1220
+ AL E+ FF +H +R L + R P L + L +L HI TLP L N+++
Sbjct: 246 KDITAALAAERKFFLSHPSYRHLAD--RMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 303
Query: 1221 HQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE-ELVVEYECRLFTKMR 1397
I +E+++Y + P+D + K L+ + F D I+G + + YE ++
Sbjct: 304 LLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARIN 363
Query: 1398 NEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEP 1577
F + + + ++I G F FETI+KKQV + EP
Sbjct: 364 RIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDMAFETIVKKQVKKIREP 423
Query: 1578 ---AVDML 1592
VDM+
Sbjct: 424 CLKCVDMV 431
>ref|NP_004399.2| dynamin-1 isoform 1 [Homo sapiens].
Length = 864
Score = 236 bits (602), Expect = 7e-62
Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 8/428 (1%)
Frame = +3
Query: 333 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPXXXXXXX 509
L D+ A+G DL LP IAV+G QS+GKSSVLE G LPRGSGIVTR P
Sbjct: 16 LQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75
Query: 510 XXNEEDEW---KGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSP 680
E E+ KGK + +D +V E+ A + G GIS I+L V SP
Sbjct: 76 ATTEYAEFLHCKGK--------KFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSP 127
Query: 681 HVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEAL 860
HV +LTL+DLPG+T+V VG+QP DIE+QI+ ++ +++ K+ + L V P N D+A ++AL
Sbjct: 128 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187
Query: 861 RMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQ 1040
++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q+DI +
Sbjct: 188 KVAKEVDPQGQRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQKDIDGK 245
Query: 1041 LSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKES 1220
+ AL E+ FF +H +R L + R P L + L +L HI TLP L N+++
Sbjct: 246 KDITAALAAERKFFLSHPSYRHLAD--RMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 303
Query: 1221 HQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE-ELVVEYECRLFTKMR 1397
I +E+++Y + P+D + K L+ + F D I+G + + YE ++
Sbjct: 304 LLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARIN 363
Query: 1398 NEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEP 1577
F + + + ++I G F FETI+KKQV + EP
Sbjct: 364 RIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDMAFETIVKKQVKKIREP 423
Query: 1578 ---AVDML 1592
VDM+
Sbjct: 424 CLKCVDMV 431
>ref|NP_001005361.1| dynamin-2 isoform 2 [Homo sapiens].
Length = 870
Score = 234 bits (597), Expect = 3e-61
Identities = 163/491 (33%), Positives = 260/491 (52%), Gaps = 7/491 (1%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ++G L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELIS 662
P E E+ S + +D +V +E+ A + G GIS I+
Sbjct: 67 RPLILQLIFSKTEHAEFLHCKSKK-----FTDFDEVRQEIEAETDRVTGTNKGISPVPIN 121
Query: 663 LEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDI 842
L V SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I ++ ++ L V P N+D+
Sbjct: 122 LRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDL 181
Query: 843 ATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQ 1022
A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q
Sbjct: 182 ANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQ 239
Query: 1023 QDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLE 1202
+DI+ + + AL E+ FF +H +R + + R P L + L +L HI ++LP L
Sbjct: 240 KDIEGKKDIRAALAAERKFFLSHPAYRHMAD--RMGTPHLQKTLNQQLTNHIRESLPALR 297
Query: 1203 NQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQG-----EELVVE 1367
++++ + +E+++Y + P+D + K L+ + F D I+G + L +
Sbjct: 298 SKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELS 357
Query: 1368 YECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETII 1547
R+ F +E + K+ + ++I G F FE I+
Sbjct: 358 GGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIHGVRTGLFTPDMAFEAIV 413
Query: 1548 KKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAE 1727
KKQ+ L+EP++ + V + +E + + L + + E+E +
Sbjct: 414 KKQIVKLKEPSLKCVDLVVSELATVIKKCAE-KLSSYPRLREETERIVTTYIREREGRTK 472
Query: 1728 TSIRLHFQMEQ 1760
I L +EQ
Sbjct: 473 DQILLLIDIEQ 483
>ref|NP_001005362.1| dynamin-2 isoform 4 [Homo sapiens].
Length = 866
Score = 234 bits (597), Expect = 3e-61
Identities = 163/491 (33%), Positives = 260/491 (52%), Gaps = 7/491 (1%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ++G L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELIS 662
P E E+ S + +D +V +E+ A + G GIS I+
Sbjct: 67 RPLILQLIFSKTEHAEFLHCKSKK-----FTDFDEVRQEIEAETDRVTGTNKGISPVPIN 121
Query: 663 LEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDI 842
L V SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I ++ ++ L V P N+D+
Sbjct: 122 LRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDL 181
Query: 843 ATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQ 1022
A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q
Sbjct: 182 ANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQ 239
Query: 1023 QDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLE 1202
+DI+ + + AL E+ FF +H +R + + R P L + L +L HI ++LP L
Sbjct: 240 KDIEGKKDIRAALAAERKFFLSHPAYRHMAD--RMGTPHLQKTLNQQLTNHIRESLPALR 297
Query: 1203 NQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQG-----EELVVE 1367
++++ + +E+++Y + P+D + K L+ + F D I+G + L +
Sbjct: 298 SKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELS 357
Query: 1368 YECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETII 1547
R+ F +E + K+ + ++I G F FE I+
Sbjct: 358 GGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIHGVRTGLFTPDMAFEAIV 413
Query: 1548 KKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAE 1727
KKQ+ L+EP++ + V + +E + + L + + E+E +
Sbjct: 414 KKQIVKLKEPSLKCVDLVVSELATVIKKCAE-KLSSYPRLREETERIVTTYIREREGRTK 472
Query: 1728 TSIRLHFQMEQ 1760
I L +EQ
Sbjct: 473 DQILLLIDIEQ 483
>ref|NP_001005360.1| dynamin-2 isoform 1 [Homo sapiens].
Length = 870
Score = 233 bits (593), Expect = 8e-61
Identities = 168/487 (34%), Positives = 258/487 (52%), Gaps = 10/487 (2%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ++G L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELIS 662
P E E+ S + +D +V +E+ A + G GIS I+
Sbjct: 67 RPLILQLIFSKTEHAEFLHCKSKK-----FTDFDEVRQEIEAETDRVTGTNKGISPVPIN 121
Query: 663 LEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDI 842
L V SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I ++ ++ L V P N+D+
Sbjct: 122 LRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDL 181
Query: 843 ATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQ 1022
A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q
Sbjct: 182 ANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQ 239
Query: 1023 QDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLE 1202
+DI+ + + AL E+ FF +H +R + + R P L + L +L HI ++LP L
Sbjct: 240 KDIEGKKDIRAALAAERKFFLSHPAYRHMAD--RMGTPHLQKTLNQQLTNHIRESLPALR 297
Query: 1203 NQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQG-----EELVVE 1367
++++ + +E+++Y + P+D + K L+ + F D I+G + L +
Sbjct: 298 SKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELS 357
Query: 1368 YECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETII 1547
R+ F +E + K+ + ++I G F FE I+
Sbjct: 358 GGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIHGVRTGLFTPDLAFEAIV 413
Query: 1548 KKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIED---IKLEQEK 1718
KKQV L+EP + + DLV E N R SK+ ++ E E+
Sbjct: 414 KKQVVKLKEPCLKCV----DLV-----------IQELINTVRQCTSKLSSYPRLREETER 458
Query: 1719 EAETSIR 1739
T IR
Sbjct: 459 IVTTYIR 465
>ref|NP_004936.2| dynamin-2 isoform 3 [Homo sapiens].
Length = 866
Score = 233 bits (593), Expect = 8e-61
Identities = 168/487 (34%), Positives = 258/487 (52%), Gaps = 10/487 (2%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ++G L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELIS 662
P E E+ S + +D +V +E+ A + G GIS I+
Sbjct: 67 RPLILQLIFSKTEHAEFLHCKSKK-----FTDFDEVRQEIEAETDRVTGTNKGISPVPIN 121
Query: 663 LEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDI 842
L V SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I ++ ++ L V P N+D+
Sbjct: 122 LRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDL 181
Query: 843 ATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQ 1022
A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q
Sbjct: 182 ANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQ 239
Query: 1023 QDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLE 1202
+DI+ + + AL E+ FF +H +R + + R P L + L +L HI ++LP L
Sbjct: 240 KDIEGKKDIRAALAAERKFFLSHPAYRHMAD--RMGTPHLQKTLNQQLTNHIRESLPALR 297
Query: 1203 NQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQG-----EELVVE 1367
++++ + +E+++Y + P+D + K L+ + F D I+G + L +
Sbjct: 298 SKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELS 357
Query: 1368 YECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETII 1547
R+ F +E + K+ + ++I G F FE I+
Sbjct: 358 GGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIHGVRTGLFTPDLAFEAIV 413
Query: 1548 KKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIED---IKLEQEK 1718
KKQV L+EP + + DLV E N R SK+ ++ E E+
Sbjct: 414 KKQVVKLKEPCLKCV----DLV-----------IQELINTVRQCTSKLSSYPRLREETER 458
Query: 1719 EAETSIR 1739
T IR
Sbjct: 459 IVTTYIR 465
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 83,990,433
Number of extensions: 2003532
Number of successful extensions: 7372
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 7289
Number of HSP's successfully gapped: 24
Length of query: 828
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 717
Effective length of database: 14,638,160
Effective search space: 10495560720
Effective search space used: 10495560720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000493
(2486 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038634.1| interferon-induced GTP-binding protein Mx2 [Mus... 862 0.0
Alignment gi|NP_034976.1| interferon-induced GTP-binding protein Mx1 [Mus... 738 0.0
Alignment gi|NP_034195.2| dynamin-1 [Mus musculus]. 235 1e-61
Alignment gi|NP_001034609.1| dynamin-2 [Mus musculus]. 233 7e-61
Alignment gi|NP_001033708.1| dynamin-3 isoform 1 [Mus musculus]. 224 2e-58
Alignment gi|NP_766234.1| dynamin-3 isoform 2 [Mus musculus]. 224 2e-58
Alignment gi|NP_001021118.1| dynamin-1-like protein isoform b [Mus muscul... 186 6e-47
Alignment gi|NP_690029.2| dynamin-1-like protein isoform a [Mus musculus]. 181 2e-45
Alignment gi|NP_001186106.1| dynamin-like 120 kDa protein, mitochondrial ... 94 4e-19
Alignment gi|NP_598513.1| dynamin-like 120 kDa protein, mitochondrial iso... 94 4e-19
>ref|NP_038634.1| interferon-induced GTP-binding protein Mx2 [Mus musculus].
Length = 655
Score = 862 bits (2228), Expect = 0.0
Identities = 451/656 (68%), Positives = 513/656 (78%)
Frame = +3
Query: 171 MVYSNCESKEPDSVSASNHLLLNGNDELVEKSHKTGPENNLYSQYEEKVRPCIDLIDSLR 350
MV S E+ DSV+ L +G L EK ++ NNL SQYEEKVRPCIDLIDSLR
Sbjct: 1 MVLSTEENTGVDSVN-----LPSGETGLGEKDQES--VNNLCSQYEEKVRPCIDLIDSLR 53
Query: 351 ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPXXXXXXXXXNEEDE 530
ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP NE +E
Sbjct: 54 ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLRKL-NEGEE 112
Query: 531 WKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDL 710
W+GKVSY D E+ELSD S+VE+ ++ Q IAG G+GIS +LISL+VSSP+VPDLTLIDL
Sbjct: 113 WRGKVSYDDIEVELSDPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDL 172
Query: 711 PGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEG 890
PGITRVAVGNQP DI QIK LIK YI KQETINLVVVP NVDIATTEAL MAQEVDPEG
Sbjct: 173 PGITRVAVGNQPADIGRQIKRLIKTYIQKQETINLVVVPSNVDIATTEALSMAQEVDPEG 232
Query: 891 DRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQLSLAKALQKE 1070
DRTIGILTKPDLVD+GTEDK+VDV RNLV+H KKGYMIVKCRGQQDIQ+QLSL +ALQ E
Sbjct: 233 DRTIGILTKPDLVDRGTEDKVVDVVRNLVYHLKKGYMIVKCRGQQDIQEQLSLTEALQNE 292
Query: 1071 QAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQK 1250
Q FF+ H HFR LLE+G+AT+PCLAERLT+ELI+HICK+LPLLENQIKESHQ +EELQK
Sbjct: 293 QIFFKEHPHFRVLLEDGKATVPCLAERLTAELILHICKSLPLLENQIKESHQSASEELQK 352
Query: 1251 YGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNEFCKWSAVVE 1430
YG DIPED+S K FFLI+KI+AFN DITAL+QGEE V E ECRLFT++R EF WS +E
Sbjct: 353 YGMDIPEDDSEKTFFLIEKINAFNQDITALVQGEENVAEGECRLFTRLRKEFLSWSKEIE 412
Query: 1431 KNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDL 1610
KNF GY + ++ FE QYRGRELPGFVNYKTFE II++Q+ LEEPA++MLHTVT++
Sbjct: 413 KNFAKGYAVLYNEVWAFEKQYRGRELPGFVNYKTFENIIRRQIKTLEEPAIEMLHTVTEI 472
Query: 1611 VRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYR 1790
VR AFT VSE NF+EF+NLHRT KSK+EDI+LEQEKEAE SIRLHF+MEQI+YCQDQ+YR
Sbjct: 473 VRAAFTSVSEKNFSEFYNLHRTTKSKLEDIRLEQEKEAEMSIRLHFKMEQIIYCQDQIYR 532
Query: 1791 GALQXXXXXXXXXXXXXXSNQYFLXXXXXXXXXXIAEIFQHLIAYHQEVGKRISSHIPLI 1970
GALQ +AEIFQHL AY QE RISSH+PLI
Sbjct: 533 GALQKVREEEAEEEKKTKHGTSSSSQSQDLQTSSMAEIFQHLNAYRQEAHNRISSHVPLI 592
Query: 1971 IQFFILRTFGXXXXXXXXXXXXNKDQYDWLLRERSDTSDKRKFLKERLMRLTQARQ 2138
IQ+FIL+ F +KD WLL+E+SDTS+KRKFLKERL RL QAR+
Sbjct: 593 IQYFILKMFAERLQKGMLQLLQDKDSCSWLLKEQSDTSEKRKFLKERLARLAQARR 648
>ref|NP_034976.1| interferon-induced GTP-binding protein Mx1 [Mus musculus].
Length = 631
Score = 738 bits (1906), Expect = 0.0
Identities = 392/626 (62%), Positives = 463/626 (73%), Gaps = 8/626 (1%)
Frame = +3
Query: 285 NNLYSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRG 464
NNL YEEKVRPCIDLID+LRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRG
Sbjct: 5 NNLCRHYEEKVRPCIDLIDTLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRG 64
Query: 465 SGIVTRCPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGI 644
SGIVTRCP E +EW+GKVSY D E+ELSD S+VE+ ++ Q IAG G+GI
Sbjct: 65 SGIVTRCPLVLKLRKL-KEGEEWRGKVSYDDIEVELSDPSEVEEAINKGQNFIAGVGLGI 123
Query: 645 SHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVV 824
S +LISL+VSSP+VPDLTLIDLPGITRVAVGNQP DI QIK LIK YI KQETINLVVV
Sbjct: 124 SDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQKQETINLVVV 183
Query: 825 PCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMI 1004
P NVDIATTEAL MAQEVDPEGDRTIG+LTKPDLVD+G E K++DV RNLV+ KKGYMI
Sbjct: 184 PSNVDIATTEALSMAQEVDPEGDRTIGVLTKPDLVDRGAEGKVLDVMRNLVYPLKKGYMI 243
Query: 1005 VKCRGQQDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICK 1184
VKCRGQQDIQ+QLSL +A QKEQ FF++H++F LLE+G+AT+PCLAERLT EL HICK
Sbjct: 244 VKCRGQQDIQEQLSLTEAFQKEQVFFKDHSYFSILLEDGKATVPCLAERLTEELTSHICK 303
Query: 1185 TLPLLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVV 1364
+LPLLE+QI SHQ +EELQKYG+DIPED+ +M FL++KI AFN +I LIQ +E V
Sbjct: 304 SLPLLEDQINSSHQSASEELQKYGADIPEDDRTRMSFLVNKISAFNRNIMNLIQAQETVS 363
Query: 1365 EYECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETI 1544
E + RLFTK+RNEF W +E+ FK + +++ FENQYRGRELPGFV+YK FE+I
Sbjct: 364 EGDSRLFTKLRNEFLAWDDHIEEYFKKDSPEVQSKMKEFENQYRGRELPGFVDYKAFESI 423
Query: 1545 IKKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEA 1724
IKK+V LEE AV+ML VT +V+ AF + +F +F NL TAKSKI++I+L QEKEA
Sbjct: 424 IKKRVKALEESAVNMLRRVTKMVQTAFVKILSNDFGDFLNLCCTAKSKIKEIRLNQEKEA 483
Query: 1725 ETSIRLHFQMEQIVYCQDQVYRGAL--------QXXXXXXXXXXXXXXSNQYFLXXXXXX 1880
E IRLHFQMEQIVYCQDQVY+ L + +N F
Sbjct: 484 ENLIRLHFQMEQIVYCQDQVYKETLKTIREKEAEKEKTKALINPATFQNNSQF-----PQ 538
Query: 1881 XXXXIAEIFQHLIAYHQEVGKRISSHIPLIIQFFILRTFGXXXXXXXXXXXXNKDQYDWL 2060
E+ QHL AY+QE + I IPLIIQ+FIL+TFG + + W
Sbjct: 539 KGLTTTEMTQHLKAYYQECRRNIGRQIPLIIQYFILKTFGEEIEKMMLQLLQDTSKCSWF 598
Query: 2061 LRERSDTSDKRKFLKERLMRLTQARQ 2138
L E+SDT +K+KFLK RL+RL +ARQ
Sbjct: 599 LEEQSDTREKKKFLKRRLLRLDEARQ 624
>ref|NP_034195.2| dynamin-1 [Mus musculus].
Length = 864
Score = 235 bits (600), Expect = 1e-61
Identities = 157/428 (36%), Positives = 232/428 (54%), Gaps = 8/428 (1%)
Frame = +3
Query: 333 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPXXXXXXX 509
L D+ A+G DL LP IAV+G QS+GKSSVLE G LPRGSGIVTR P
Sbjct: 16 LQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75
Query: 510 XXNEEDEW---KGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSP 680
E E+ KGK + +D +V E+ A + G GIS I+L V SP
Sbjct: 76 STTEYAEFLHCKGK--------KFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSP 127
Query: 681 HVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEAL 860
HV +LTL+DLPG+T+V VG+QP DIE+QI+ ++ +++ K+ + L V P N D+A ++AL
Sbjct: 128 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187
Query: 861 RMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQ 1040
++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q+DI +
Sbjct: 188 KIAKEVDPQGQRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQKDIDGK 245
Query: 1041 LSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKES 1220
+ AL E+ FF +H +R L + R P L + L +L HI TLP L N+++
Sbjct: 246 KDITAALAAERKFFLSHPSYRHLAD--RMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 303
Query: 1221 HQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE-ELVVEYECRLFTKMR 1397
I +E+ +Y + P+D + K L+ + F D I+G + + YE ++
Sbjct: 304 LLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARIN 363
Query: 1398 NEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEP 1577
F + + + ++I G F FETI+KKQV + EP
Sbjct: 364 RIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDMAFETIVKKQVKKIREP 423
Query: 1578 ---AVDML 1592
VDM+
Sbjct: 424 CLKCVDMV 431
>ref|NP_001034609.1| dynamin-2 [Mus musculus].
Length = 869
Score = 233 bits (593), Expect = 7e-61
Identities = 163/491 (33%), Positives = 260/491 (52%), Gaps = 7/491 (1%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ++G L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELIS 662
P E E+ S + +D +V +E+ A + G GIS I+
Sbjct: 67 RPLILQLIFSKTEYAEFLHCKSKK-----FTDFDEVRQEIEAETDRVTGTNKGISPVPIN 121
Query: 663 LEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDI 842
L V SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I ++ ++ L V P N+D+
Sbjct: 122 LRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDL 181
Query: 843 ATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQ 1022
A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q
Sbjct: 182 ANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQ 239
Query: 1023 QDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLE 1202
+DI+ + + AL E+ FF +H +R + + R P L + L +L HI ++LP L
Sbjct: 240 KDIEGKKDIRAALAAERKFFLSHPAYRHMAD--RMGTPHLQKTLNQQLTNHIRESLPTLR 297
Query: 1203 NQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQG-----EELVVE 1367
++++ + +E+++Y + P+D + K L+ + F D I+G + L +
Sbjct: 298 SKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELS 357
Query: 1368 YECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETII 1547
R+ F +E + K+ + ++I G F FE I+
Sbjct: 358 GGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIHGVRTGLFTPDMAFEAIV 413
Query: 1548 KKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAE 1727
KKQ+ L+EP++ + V + +E + + L + + E+E +
Sbjct: 414 KKQLVKLKEPSLKCVDLVVSELATVIKKCAE-KLSSYPRLREETERIVTTYIREREGRTK 472
Query: 1728 TSIRLHFQMEQ 1760
I L +EQ
Sbjct: 473 DQILLLIDIEQ 483
>ref|NP_001033708.1| dynamin-3 isoform 1 [Mus musculus].
Length = 863
Score = 224 bits (571), Expect = 2e-58
Identities = 157/437 (35%), Positives = 233/437 (53%), Gaps = 6/437 (1%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ALG L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEW---KGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHE 653
P E E+ KGK + +D +V E+ A + G GIS
Sbjct: 67 RPLVLQLVTSKAEYAEFLHCKGK--------KFTDFDEVRHEIEAETDRVTGMNKGISSI 118
Query: 654 LISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCN 833
I+L V SPHV +LTLIDLPGIT+V VG+QP DIEYQI+ +I ++I ++ + L V P N
Sbjct: 119 PINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPAN 178
Query: 834 VDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKC 1013
D+A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V
Sbjct: 179 TDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYVGVVN 236
Query: 1014 RGQQDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLP 1193
R Q+DI + + A+ E+ FF +H +R + + R P L + L +L HI TLP
Sbjct: 237 RSQKDIDGKKDIKAAMLAERKFFLSHPAYRHIAD--RMGTPHLQKVLNQQLTNHIRDTLP 294
Query: 1194 LLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE-ELVVEY 1370
N+++ I E++ + + PED + K L+ + F D I+G + V
Sbjct: 295 NFRNKLQGQLLSIEHEVEAFKNFKPEDPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTL 354
Query: 1371 ECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIK 1550
E K+ F + + + ++I G F FE I+K
Sbjct: 355 ELSGGAKINRIFHERFPFEIVKMEFNEKELRREISYAIKNIHGIRTGLFTPDMAFEAIVK 414
Query: 1551 KQVSVLEEPAVDMLHTV 1601
KQ+ L+ P++ + V
Sbjct: 415 KQIVKLKGPSLKSVDLV 431
>ref|NP_766234.1| dynamin-3 isoform 2 [Mus musculus].
Length = 859
Score = 224 bits (571), Expect = 2e-58
Identities = 157/437 (35%), Positives = 233/437 (53%), Gaps = 6/437 (1%)
Frame = +3
Query: 309 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 482
E++ P ++ L D+ ALG L LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 7 EELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 483 CPXXXXXXXXXNEEDEW---KGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHE 653
P E E+ KGK + +D +V E+ A + G GIS
Sbjct: 67 RPLVLQLVTSKAEYAEFLHCKGK--------KFTDFDEVRHEIEAETDRVTGMNKGISSI 118
Query: 654 LISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCN 833
I+L V SPHV +LTLIDLPGIT+V VG+QP DIEYQI+ +I ++I ++ + L V P N
Sbjct: 119 PINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPAN 178
Query: 834 VDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKC 1013
D+A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V
Sbjct: 179 TDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYVGVVN 236
Query: 1014 RGQQDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLP 1193
R Q+DI + + A+ E+ FF +H +R + + R P L + L +L HI TLP
Sbjct: 237 RSQKDIDGKKDIKAAMLAERKFFLSHPAYRHIAD--RMGTPHLQKVLNQQLTNHIRDTLP 294
Query: 1194 LLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE-ELVVEY 1370
N+++ I E++ + + PED + K L+ + F D I+G + V
Sbjct: 295 NFRNKLQGQLLSIEHEVEAFKNFKPEDPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTL 354
Query: 1371 ECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIK 1550
E K+ F + + + ++I G F FE I+K
Sbjct: 355 ELSGGAKINRIFHERFPFEIVKMEFNEKELRREISYAIKNIHGIRTGLFTPDMAFEAIVK 414
Query: 1551 KQVSVLEEPAVDMLHTV 1601
KQ+ L+ P++ + V
Sbjct: 415 KQIVKLKGPSLKSVDLV 431
>ref|NP_001021118.1| dynamin-1-like protein isoform b [Mus musculus].
Length = 699
Score = 186 bits (473), Expect = 6e-47
Identities = 150/455 (32%), Positives = 229/455 (50%), Gaps = 22/455 (4%)
Frame = +3
Query: 372 LALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPXXXXXXXXXNEE-------- 524
+ LP I V+G QSSGKSSVLE+L G LPRG+G+VTR P E+
Sbjct: 23 IQLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGVVTRRPLILQLVHVSPEDKRKTTGEE 82
Query: 525 -----DEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVP 689
+EW GK + +++ +D ++ +E+ I+G G+S E I L+V SP+V
Sbjct: 83 NGVEAEEW-GKFLHTKNKL-YTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVV 140
Query: 690 DLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMA 869
+LTL+DLPG+T+V VG+QP DIE QI+ LI ++I +I L V N D+AT+EAL+++
Sbjct: 141 NLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKIS 200
Query: 870 QEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQLSL 1049
+EVDP+G RT+ ++TK DL+D GT+ +DV V K G + V R Q DI ++ S+
Sbjct: 201 REVDPDGRRTLAVITKLDLMDAGTD--AMDVLMGRVIPVKLGIIGVVNRSQLDINNKKSV 258
Query: 1050 AKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQK 1229
+++ E AF + + L R LA L L+ HI LP L+ +I +
Sbjct: 259 TDSIRDEYAFLQK--KYPSL--ANRNGTKYLARTLNRLLMHHIRDCLPELKTRINVLAAQ 314
Query: 1230 ITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYE-----CRLFTKM 1394
L YG + +D+S + LI K F ++ I+G +E R+
Sbjct: 315 YQSLLNSYGEPV-DDKSATLLQLITK---FATEYCNTIEGTAKYIETSELCGGARICYIF 370
Query: 1395 RNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEE 1574
F + V+ G + I I G FV +FE ++K+Q+ LEE
Sbjct: 371 HETFGRTLESVDP--LGGLNTI--DILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEE 426
Query: 1575 PA---VDMLHTVTDLVRLAFTDVSETNFNEFFNLH 1670
P+ V+++H + ++ S F LH
Sbjct: 427 PSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLH 461
>ref|NP_690029.2| dynamin-1-like protein isoform a [Mus musculus].
Length = 712
Score = 181 bits (460), Expect = 2e-45
Identities = 150/468 (32%), Positives = 229/468 (48%), Gaps = 35/468 (7%)
Frame = +3
Query: 372 LALPAIAVIGDQSSGKSSVLEALSG-VALPRGSGIVTRCPXXXXXXXXXNEE-------- 524
+ LP I V+G QSSGKSSVLE+L G LPRG+G+VTR P E+
Sbjct: 23 IQLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGVVTRRPLILQLVHVSPEDKRKTTGEE 82
Query: 525 ------------------DEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISH 650
+EW GK + +++ +D ++ +E+ I+G G+S
Sbjct: 83 NDPATWKNSRHLSKGVEAEEW-GKFLHTKNKL-YTDFDEIRQEIENETERISGNNKGVSP 140
Query: 651 ELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPC 830
E I L+V SP+V +LTL+DLPG+T+V VG+QP DIE QI+ LI ++I +I L V
Sbjct: 141 EPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAA 200
Query: 831 NVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVK 1010
N D+AT+EAL++++EVDP+G RT+ ++TK DL+D GT+ +DV V K G + V
Sbjct: 201 NTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTD--AMDVLMGRVIPVKLGIIGVV 258
Query: 1011 CRGQQDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTL 1190
R Q DI ++ S+ +++ E AF + + L R LA L L+ HI L
Sbjct: 259 NRSQLDINNKKSVTDSIRDEYAFLQK--KYPSL--ANRNGTKYLARTLNRLLMHHIRDCL 314
Query: 1191 PLLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEY 1370
P L+ +I + L YG + +D+S + LI K F ++ I+G +E
Sbjct: 315 PELKTRINVLAAQYQSLLNSYGEPV-DDKSATLLQLITK---FATEYCNTIEGTAKYIET 370
Query: 1371 E-----CRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTF 1535
R+ F + V+ G + I I G FV +F
Sbjct: 371 SELCGGARICYIFHETFGRTLESVDP--LGGLNTI--DILTAIRNATGPRPALFVPEVSF 426
Query: 1536 ETIIKKQVSVLEEPA---VDMLHTVTDLVRLAFTDVSETNFNEFFNLH 1670
E ++K+Q+ LEEP+ V+++H + ++ S F LH
Sbjct: 427 ELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLH 474
>ref|NP_001186106.1| dynamin-like 120 kDa protein, mitochondrial isoform 1 precursor [Mus
musculus].
Length = 978
Score = 94.4 bits (233), Expect = 4e-19
Identities = 80/279 (28%), Positives = 127/279 (45%), Gaps = 5/279 (1%)
Frame = +3
Query: 267 HKTGPENNLYSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSG 446
H + +L Y E +D++ A QD LP + V+GDQS+GK+SVLE ++
Sbjct: 274 HHRKLKKSLIDMYSE----VLDVLSDYDASYNTQD-HLPRVVVVGDQSAGKTSVLEMIAQ 328
Query: 447 VAL-PRGSG-IVTRCPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIA 620
+ PRGSG ++TR P + +K D E D + + E+
Sbjct: 329 ARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKE-EDLAALRHEIELRMRK 387
Query: 621 IAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQ 800
EG +S E ISL V P + + L+DLPG+ D + I S+ K Y+
Sbjct: 388 NVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNP 447
Query: 801 ETINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDK--GTEDKIVDVARNL 974
I L + +VD + + ++DP G RTI +LTK DL +K + +I +
Sbjct: 448 NAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGK 507
Query: 975 VFHPKK-GYMIVKCRGQQDIQDQLSLAKALQKEQAFFEN 1088
+F K GY V G+ + + + + + E+ FF+N
Sbjct: 508 LFPMKALGYFAV-VTGKGNSSESIEAIR--EYEEEFFQN 543
>ref|NP_598513.1| dynamin-like 120 kDa protein, mitochondrial isoform 2 precursor [Mus
musculus].
Length = 960
Score = 94.4 bits (233), Expect = 4e-19
Identities = 80/279 (28%), Positives = 127/279 (45%), Gaps = 5/279 (1%)
Frame = +3
Query: 267 HKTGPENNLYSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSG 446
H + +L Y E +D++ A QD LP + V+GDQS+GK+SVLE ++
Sbjct: 256 HHRKLKKSLIDMYSE----VLDVLSDYDASYNTQD-HLPRVVVVGDQSAGKTSVLEMIAQ 310
Query: 447 VAL-PRGSG-IVTRCPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIA 620
+ PRGSG ++TR P + +K D E D + + E+
Sbjct: 311 ARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKE-EDLAALRHEIELRMRK 369
Query: 621 IAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQ 800
EG +S E ISL V P + + L+DLPG+ D + I S+ K Y+
Sbjct: 370 NVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNP 429
Query: 801 ETINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDK--GTEDKIVDVARNL 974
I L + +VD + + ++DP G RTI +LTK DL +K + +I +
Sbjct: 430 NAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGK 489
Query: 975 VFHPKK-GYMIVKCRGQQDIQDQLSLAKALQKEQAFFEN 1088
+F K GY V G+ + + + + + E+ FF+N
Sbjct: 490 LFPMKALGYFAV-VTGKGNSSESIEAIR--EYEEEFFQN 525
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 71,064,861
Number of extensions: 1678289
Number of successful extensions: 5987
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5936
Number of HSP's successfully gapped: 11
Length of query: 828
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 718
Effective length of database: 12,313,599
Effective search space: 8841164082
Effective search space used: 8841164082
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000493
(2486 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999226.1| interferon-induced GTP-binding protein Mx1 [Sus... 1183 0.0
Alignment gi|NP_001090885.1| interferon-induced GTP-binding protein Mx2 [... 442 e-124
Alignment gi|XP_003122242.1| PREDICTED: dynamin-1 [Sus scrofa]. 236 4e-62
Alignment gi|XP_001928135.1| PREDICTED: dynamin-1 isoform 1 [Sus scrofa]. 236 4e-62
Alignment gi|XP_003353723.1| PREDICTED: dynamin-1-like isoform 2 [Sus scr... 236 4e-62
Alignment gi|XP_003353722.1| PREDICTED: dynamin-1-like isoform 1 [Sus scr... 236 4e-62
Alignment gi|XP_003354114.1| PREDICTED: dynamin-2-like [Sus scrofa]. 206 5e-53
Alignment gi|XP_003132828.2| PREDICTED: interferon-induced GTP-binding pr... 173 4e-43
Alignment gi|XP_003355574.1| PREDICTED: dynamin-1-like protein-like [Sus ... 154 2e-37
Alignment gi|XP_003361037.1| PREDICTED: dynamin-1-like, partial [Sus scro... 59 2e-08
>ref|NP_999226.1| interferon-induced GTP-binding protein Mx1 [Sus scrofa].
Length = 663
Score = 1183 bits (3060), Expect = 0.0
Identities = 606/656 (92%), Positives = 610/656 (92%)
Frame = +3
Query: 171 MVYSNCESKEPDSVSASNHLLLNGNDELVEKSHKTGPENNLYSQYEEKVRPCIDLIDSLR 350
MVYS+CESKEPDSVSASNHLLLNGNDELVEKSHKTGPENNLYSQYEEKVRPCIDLIDSLR
Sbjct: 1 MVYSSCESKEPDSVSASNHLLLNGNDELVEKSHKTGPENNLYSQYEEKVRPCIDLIDSLR 60
Query: 351 ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPXXXXXXXXXNEEDE 530
ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP NEEDE
Sbjct: 61 ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEEDE 120
Query: 531 WKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDL 710
WKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDL
Sbjct: 121 WKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDL 180
Query: 711 PGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEG 890
PGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEG
Sbjct: 181 PGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEG 240
Query: 891 DRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQLSLAKALQKE 1070
DRTIGILTKPDLVDKGTEDKIVDVARNLVFH KKGYMIVKCRGQQDIQ+QLSLAKALQKE
Sbjct: 241 DRTIGILTKPDLVDKGTEDKIVDVARNLVFHLKKGYMIVKCRGQQDIQEQLSLAKALQKE 300
Query: 1071 QAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQK 1250
QAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQK
Sbjct: 301 QAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQK 360
Query: 1251 YGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNEFCKWSAVVE 1430
YGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNEFC+WSAVVE
Sbjct: 361 YGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNEFCRWSAVVE 420
Query: 1431 KNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDL 1610
KNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDL
Sbjct: 421 KNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDL 480
Query: 1611 VRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYR 1790
VRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYR
Sbjct: 481 VRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYR 540
Query: 1791 GALQXXXXXXXXXXXXXXSNQYFLXXXXXXXXXXIAEIFQHLIAYHQEVGKRISSHIPLI 1970
GALQ SNQYFL IAEIFQHLIAYHQEVGKRISSHIPLI
Sbjct: 541 GALQKVREKEAEEEKNRKSNQYFLSSPAPSSDPSIAEIFQHLIAYHQEVGKRISSHIPLI 600
Query: 1971 IQFFILRTFGXXXXXXXXXXXXNKDQYDWLLRERSDTSDKRKFLKERLMRLTQARQ 2138
IQFFILRTFG NKDQYDWLLRERSDTSDKRKFLKERLMRLTQAR+
Sbjct: 601 IQFFILRTFGQQLQKSMLQLLQNKDQYDWLLRERSDTSDKRKFLKERLMRLTQARR 656
>ref|NP_001090885.1| interferon-induced GTP-binding protein Mx2 [Sus scrofa].
Length = 389
Score = 442 bits (1137), Expect = e-124
Identities = 228/301 (75%), Positives = 257/301 (85%)
Frame = +3
Query: 276 GPENNLYSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVAL 455
GPENNLYS +EEKVRPCIDLIDSLRALGVEQDLALP IAVIGDQSSGKSSVLEALSGV L
Sbjct: 81 GPENNLYSPFEEKVRPCIDLIDSLRALGVEQDLALPTIAVIGDQSSGKSSVLEALSGVPL 140
Query: 456 PRGSGIVTRCPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEG 635
PRGSGI+TRCP +E W+G++SYR E++L D SQVE+E+ AQ AIAG G
Sbjct: 141 PRGSGIITRCPLALRLK---KKECPWQGRISYRKVELQLQDPSQVEREIRKAQDAIAGSG 197
Query: 636 VGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINL 815
VGISHELISLEV+SP VPDLTLIDLPGITRVAVGNQP DI QIK+LI+KYI +Q+TINL
Sbjct: 198 VGISHELISLEVTSPEVPDLTLIDLPGITRVAVGNQPQDIGLQIKALIRKYIQEQQTINL 257
Query: 816 VVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKG 995
VVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVD G E +++V +NL +H KKG
Sbjct: 258 VVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDTGAEKVVLNVMQNLTYHLKKG 317
Query: 996 YMIVKCRGQQDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMH 1175
YMIVKCRGQQ+I ++LSLA+A ++E AFF +H HFR LLEEG+AT+P LAERLT ELI H
Sbjct: 318 YMIVKCRGQQEILNKLSLAEATKREIAFFHSHPHFRILLEEGKATVPRLAERLTVELIGH 377
Query: 1176 I 1178
I
Sbjct: 378 I 378
>ref|XP_003122242.1| PREDICTED: dynamin-1 [Sus scrofa].
Length = 851
Score = 236 bits (602), Expect = 4e-62
Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 8/428 (1%)
Frame = +3
Query: 333 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPXXXXXXX 509
L D+ A+G DL LP IAV+G QS+GKSSVLE G LPRGSGIVTR P
Sbjct: 16 LQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75
Query: 510 XXNEEDEW---KGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSP 680
E E+ KGK + +D +V E+ A + G GIS I+L V SP
Sbjct: 76 ATTEYAEFLHCKGK--------KFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSP 127
Query: 681 HVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEAL 860
HV +LTL+DLPG+T+V VG+QP DIE+QI+ ++ +++ K+ + L V P N D+A ++AL
Sbjct: 128 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187
Query: 861 RMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQ 1040
++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q+DI +
Sbjct: 188 KVAKEVDPQGQRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQKDIDGK 245
Query: 1041 LSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKES 1220
+ AL E+ FF +H +R L + R P L + L +L HI TLP L N+++
Sbjct: 246 KDITAALAAERKFFLSHPSYRHLAD--RMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 303
Query: 1221 HQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE-ELVVEYECRLFTKMR 1397
I +E+++Y + P+D + K L+ + F D I+G + + YE ++
Sbjct: 304 LLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARIN 363
Query: 1398 NEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEP 1577
F + + + ++I G F FETI+KKQV + EP
Sbjct: 364 RIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDMAFETIVKKQVKKIREP 423
Query: 1578 ---AVDML 1592
VDM+
Sbjct: 424 CLKCVDMV 431
>ref|XP_001928135.1| PREDICTED: dynamin-1 isoform 1 [Sus scrofa].
Length = 864
Score = 236 bits (602), Expect = 4e-62
Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 8/428 (1%)
Frame = +3
Query: 333 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPXXXXXXX 509
L D+ A+G DL LP IAV+G QS+GKSSVLE G LPRGSGIVTR P
Sbjct: 16 LQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75
Query: 510 XXNEEDEW---KGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSP 680
E E+ KGK + +D +V E+ A + G GIS I+L V SP
Sbjct: 76 ATTEYAEFLHCKGK--------KFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSP 127
Query: 681 HVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEAL 860
HV +LTL+DLPG+T+V VG+QP DIE+QI+ ++ +++ K+ + L V P N D+A ++AL
Sbjct: 128 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187
Query: 861 RMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQ 1040
++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q+DI +
Sbjct: 188 KVAKEVDPQGQRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQKDIDGK 245
Query: 1041 LSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKES 1220
+ AL E+ FF +H +R L + R P L + L +L HI TLP L N+++
Sbjct: 246 KDITAALAAERKFFLSHPSYRHLAD--RMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 303
Query: 1221 HQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE-ELVVEYECRLFTKMR 1397
I +E+++Y + P+D + K L+ + F D I+G + + YE ++
Sbjct: 304 LLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARIN 363
Query: 1398 NEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEP 1577
F + + + ++I G F FETI+KKQV + EP
Sbjct: 364 RIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDMAFETIVKKQVKKIREP 423
Query: 1578 ---AVDML 1592
VDM+
Sbjct: 424 CLKCVDMV 431
>ref|XP_003353723.1| PREDICTED: dynamin-1-like isoform 2 [Sus scrofa].
Length = 851
Score = 236 bits (602), Expect = 4e-62
Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 8/428 (1%)
Frame = +3
Query: 333 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPXXXXXXX 509
L D+ A+G DL LP IAV+G QS+GKSSVLE G LPRGSGIVTR P
Sbjct: 16 LQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75
Query: 510 XXNEEDEW---KGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSP 680
E E+ KGK + +D +V E+ A + G GIS I+L V SP
Sbjct: 76 ATTEYAEFLHCKGK--------KFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSP 127
Query: 681 HVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEAL 860
HV +LTL+DLPG+T+V VG+QP DIE+QI+ ++ +++ K+ + L V P N D+A ++AL
Sbjct: 128 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187
Query: 861 RMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQ 1040
++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q+DI +
Sbjct: 188 KVAKEVDPQGQRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQKDIDGK 245
Query: 1041 LSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKES 1220
+ AL E+ FF +H +R L + R P L + L +L HI TLP L N+++
Sbjct: 246 KDITAALAAERKFFLSHPSYRHLAD--RMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 303
Query: 1221 HQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE-ELVVEYECRLFTKMR 1397
I +E+++Y + P+D + K L+ + F D I+G + + YE ++
Sbjct: 304 LLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARIN 363
Query: 1398 NEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEP 1577
F + + + ++I G F FETI+KKQV + EP
Sbjct: 364 RIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDMAFETIVKKQVKKIREP 423
Query: 1578 ---AVDML 1592
VDM+
Sbjct: 424 CLKCVDMV 431
>ref|XP_003353722.1| PREDICTED: dynamin-1-like isoform 1 [Sus scrofa].
Length = 864
Score = 236 bits (602), Expect = 4e-62
Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 8/428 (1%)
Frame = +3
Query: 333 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPXXXXXXX 509
L D+ A+G DL LP IAV+G QS+GKSSVLE G LPRGSGIVTR P
Sbjct: 16 LQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75
Query: 510 XXNEEDEW---KGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSP 680
E E+ KGK + +D +V E+ A + G GIS I+L V SP
Sbjct: 76 ATTEYAEFLHCKGK--------KFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSP 127
Query: 681 HVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEAL 860
HV +LTL+DLPG+T+V VG+QP DIE+QI+ ++ +++ K+ + L V P N D+A ++AL
Sbjct: 128 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187
Query: 861 RMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQ 1040
++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++GY+ V R Q+DI +
Sbjct: 188 KVAKEVDPQGQRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQKDIDGK 245
Query: 1041 LSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKES 1220
+ AL E+ FF +H +R L + R P L + L +L HI TLP L N+++
Sbjct: 246 KDITAALAAERKFFLSHPSYRHLAD--RMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 303
Query: 1221 HQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE-ELVVEYECRLFTKMR 1397
I +E+++Y + P+D + K L+ + F D I+G + + YE ++
Sbjct: 304 LLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARIN 363
Query: 1398 NEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEP 1577
F + + + ++I G F FETI+KKQV + EP
Sbjct: 364 RIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDMAFETIVKKQVKKIREP 423
Query: 1578 ---AVDML 1592
VDM+
Sbjct: 424 CLKCVDMV 431
>ref|XP_003354114.1| PREDICTED: dynamin-2-like [Sus scrofa].
Length = 841
Score = 206 bits (524), Expect = 5e-53
Identities = 141/441 (31%), Positives = 230/441 (52%), Gaps = 5/441 (1%)
Frame = +3
Query: 453 LPRGSGIVTRCPXXXXXXXXXNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGE 632
LPRGSGIVTR P E E+ S + ++ E +V +E+ A + G
Sbjct: 27 LPRGSGIVTRRPLILQLIFSKTEYAEFLHCKSKKFTDFE-----EVRQEIEAETDRVTGT 81
Query: 633 GVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETIN 812
GIS I+L V SPHV +LTLIDLPGIT+V VG+QP DIEYQIK +I ++I ++ ++
Sbjct: 82 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLI 141
Query: 813 LVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKK 992
L V P N+D+A ++AL++A+EVDP+G RTIG++TK DL+D+GT+ + DV N + ++
Sbjct: 142 LAVTPANMDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDAR--DVLENKLLPLRR 199
Query: 993 GYMIVKCRGQQDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIM 1172
GY+ V R Q+DI+ + + AL E+ FF +H +R + + R P L + L +L
Sbjct: 200 GYIGVVNRSQKDIEGKKDIRAALAAERKFFLSHPAYRHMAD--RMGTPHLQKTLNQQLTN 257
Query: 1173 HICKTLPLLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQG- 1349
HI ++LP L ++++ + +E+++Y + P+D + K L+ + F D I+G
Sbjct: 258 HIRESLPALRSKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGS 317
Query: 1350 ----EELVVEYECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGF 1517
+ L + R+ F +E + K+ + ++I G F
Sbjct: 318 GDQVDTLELSGGARINRIFHERFPFELVKMEFDEKD----LRREISYAIKNIHGVRTGLF 373
Query: 1518 VNYKTFETIIKKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIED 1697
FE I+KKQ+ L+EP++ + V + +E + + L + +
Sbjct: 374 TPDMAFEAIVKKQIVKLKEPSLKCVDLVVSELATVIKKCAE-KLSSYPRLREETERIVTT 432
Query: 1698 IKLEQEKEAETSIRLHFQMEQ 1760
E+E + I L +EQ
Sbjct: 433 YIREREGRTKDQILLLIDIEQ 453
>ref|XP_003132828.2| PREDICTED: interferon-induced GTP-binding protein Mx2-like [Sus
scrofa].
Length = 156
Score = 173 bits (439), Expect = 4e-43
Identities = 88/100 (88%), Positives = 88/100 (88%)
Frame = +3
Query: 1929 QEVGKRISSHIPLIIQFFILRTFGXXXXXXXXXXXXNKDQYDWLLRERSDTSDKRKFLKE 2108
QEVGKRISSHIPLIIQFFILRTFG NKDQYDWLLRERSDTSDKRKFLKE
Sbjct: 57 QEVGKRISSHIPLIIQFFILRTFGQQLQKSMLQLLQNKDQYDWLLRERSDTSDKRKFLKE 116
Query: 2109 RLMRLTQARQVPRLNRALQAARGLQGTSPGNEDQPPSLTD 2228
RLMRLTQARQVPRLNRALQAARGLQGTSPGNEDQPPSLTD
Sbjct: 117 RLMRLTQARQVPRLNRALQAARGLQGTSPGNEDQPPSLTD 156
>ref|XP_003355574.1| PREDICTED: dynamin-1-like protein-like [Sus scrofa].
Length = 862
Score = 154 bits (389), Expect = 2e-37
Identities = 123/392 (31%), Positives = 197/392 (50%), Gaps = 8/392 (2%)
Frame = +3
Query: 519 EEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLT 698
E +EW GK + +++ +D ++ +E+ I+G G+S E I L++ SP+V +LT
Sbjct: 84 EAEEW-GKFLHTKNKL-YTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLT 141
Query: 699 LIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEV 878
L+DLPG+T+V VG+QP DIE QI+ LI ++I +I L V N D+AT+EAL++++EV
Sbjct: 142 LVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREV 201
Query: 879 DPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHPKKGYMIVKCRGQQDIQDQLSLAKA 1058
DP+G RT+ ++TK DL+D GT+ +DV V K G + V R Q DI ++ S+ +
Sbjct: 202 DPDGRRTLAVITKLDLMDAGTD--AMDVLMGRVIPVKLGIIGVVNRSQLDINNKKSVTDS 259
Query: 1059 LQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITE 1238
++ E AF + + L R LA L L+ HI LP L+ +I +
Sbjct: 260 IRDEYAFLQK--KYPSL--ANRNGTKYLARTLNRLLMHHIRDCLPELKTRINVLAAQYQS 315
Query: 1239 ELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYE-----CRLFTKMRNE 1403
L YG + +D+S + LI K F ++ I+G +E R+
Sbjct: 316 LLNSYGEPV-DDKSATLLQLITK---FATEYCNTIEGTAKYIETSELCGGARICYIFHET 371
Query: 1404 FCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYKTFETIIKKQVSVLEEPA- 1580
F + V+ G + I I G FV +FE ++K+Q+ LEEP+
Sbjct: 372 FGRTLESVDP--LGGLNTI--DILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSL 427
Query: 1581 --VDMLHTVTDLVRLAFTDVSETNFNEFFNLH 1670
V+++H + ++ S F LH
Sbjct: 428 RCVELVHEEMQRIIQHCSNYSTQELLRFPKLH 459
>ref|XP_003361037.1| PREDICTED: dynamin-1-like, partial [Sus scrofa].
Length = 648
Score = 58.5 bits (140), Expect = 2e-08
Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 1/217 (0%)
Frame = +3
Query: 993 GYMIVKCRGQQDIQDQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIM 1172
GY+ V R Q+DI + + AL E+ FF +H +R L + R P L + L +L
Sbjct: 2 GYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLAD--RMGTPYLQKVLNQQLTN 59
Query: 1173 HICKTLPLLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE 1352
L N+++ I +E+++Y + P+D + K L+ + F D I+G
Sbjct: 60 XXXXXXXXLRNKLQSQLLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGS 119
Query: 1353 -ELVVEYECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYRGRELPGFVNYK 1529
+ + YE ++ F + + + ++I G F
Sbjct: 120 GDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRXGLFTPDL 179
Query: 1530 TFETIIKKQVSVLEEPAVDMLHTVTDLVRLAFTDVSE 1640
FE +KKQV L+EP++ + V + SE
Sbjct: 180 AFEATVKKQVQKLKEPSIKCVDMVVSELTATIRKCSE 216
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 52,797,643
Number of extensions: 1269563
Number of successful extensions: 4638
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4611
Number of HSP's successfully gapped: 10
Length of query: 828
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 721
Effective length of database: 8,679,953
Effective search space: 6258246113
Effective search space used: 6258246113
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000493
(2486 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 906 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 906 bits (457), Expect = 0.0
Identities = 457/457 (100%)
Strand = Plus / Minus
Query: 1929 caggaggtcggcaagcgcatctccagccacatccctctgatcatccagttcttcatcctc 1988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214989559 caggaggtcggcaagcgcatctccagccacatccctctgatcatccagttcttcatcctc 214989500
Query: 1989 cggacctttgggcagcagctgcagaagagcatgctgcagctgctgcagaacaaggaccaa 2048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214989499 cggacctttgggcagcagctgcagaagagcatgctgcagctgctgcagaacaaggaccaa 214989440
Query: 2049 tacgactggctcctgagggagcgcagtgacaccagcgacaagaggaagttcctgaaggag 2108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214989439 tacgactggctcctgagggagcgcagtgacaccagcgacaagaggaagttcctgaaggag 214989380
Query: 2109 cggctgatgcggctgacccaggctcgccaagttcccaggctgaaccgggctctccaggcg 2168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214989379 cggctgatgcggctgacccaggctcgccaagttcccaggctgaaccgggctctccaggcg 214989320
Query: 2169 gcccggggtctccagggcacgtctccaggcaacgaggaccaacctccttccctaacagac 2228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214989319 gcccggggtctccagggcacgtctccaggcaacgaggaccaacctccttccctaacagac 214989260
Query: 2229 tagcatcatgagctcctgtttcgcacatcctcctgtggttagtagactctaaagccaccg 2288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214989259 tagcatcatgagctcctgtttcgcacatcctcctgtggttagtagactctaaagccaccg 214989200
Query: 2289 tccctgctgttagtggctgaggacttagcaagaagctgtgataagcacgctggctgcaag 2348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214989199 tccctgctgttagtggctgaggacttagcaagaagctgtgataagcacgctggctgcaag 214989140
Query: 2349 catcaggccatttacttgaatgagccccgccaacgct 2385
|||||||||||||||||||||||||||||||||||||
Sbjct: 214989139 catcaggccatttacttgaatgagccccgccaacgct 214989103
Score = 906 bits (457), Expect = 0.0
Identities = 457/457 (100%)
Strand = Plus / Plus
Query: 1929 caggaggtcggcaagcgcatctccagccacatccctctgatcatccagttcttcatcctc 1988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215346767 caggaggtcggcaagcgcatctccagccacatccctctgatcatccagttcttcatcctc 215346826
Query: 1989 cggacctttgggcagcagctgcagaagagcatgctgcagctgctgcagaacaaggaccaa 2048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215346827 cggacctttgggcagcagctgcagaagagcatgctgcagctgctgcagaacaaggaccaa 215346886
Query: 2049 tacgactggctcctgagggagcgcagtgacaccagcgacaagaggaagttcctgaaggag 2108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215346887 tacgactggctcctgagggagcgcagtgacaccagcgacaagaggaagttcctgaaggag 215346946
Query: 2109 cggctgatgcggctgacccaggctcgccaagttcccaggctgaaccgggctctccaggcg 2168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215346947 cggctgatgcggctgacccaggctcgccaagttcccaggctgaaccgggctctccaggcg 215347006
Query: 2169 gcccggggtctccagggcacgtctccaggcaacgaggaccaacctccttccctaacagac 2228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215347007 gcccggggtctccagggcacgtctccaggcaacgaggaccaacctccttccctaacagac 215347066
Query: 2229 tagcatcatgagctcctgtttcgcacatcctcctgtggttagtagactctaaagccaccg 2288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215347067 tagcatcatgagctcctgtttcgcacatcctcctgtggttagtagactctaaagccaccg 215347126
Query: 2289 tccctgctgttagtggctgaggacttagcaagaagctgtgataagcacgctggctgcaag 2348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215347127 tccctgctgttagtggctgaggacttagcaagaagctgtgataagcacgctggctgcaag 215347186
Query: 2349 catcaggccatttacttgaatgagccccgccaacgct 2385
|||||||||||||||||||||||||||||||||||||
Sbjct: 215347187 catcaggccatttacttgaatgagccccgccaacgct 215347223
Score = 500 bits (252), Expect = e-138
Identities = 252/252 (100%)
Strand = Plus / Minus
Query: 1681 agtccaaaattgaagacattaaattagaacaagaaaaagaagctgagacgtcgatccggc 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214992731 agtccaaaattgaagacattaaattagaacaagaaaaagaagctgagacgtcgatccggc 214992672
Query: 1741 tccacttccaaatggagcagatcgtgtactgccaggaccaggtctatcggggcgcgctgc 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214992671 tccacttccaaatggagcagatcgtgtactgccaggaccaggtctatcggggcgcgctgc 214992612
Query: 1801 agaaggtcagagagaaggaggcggaagaagaaaagaacagaaaatcaaaccagtactttc 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214992611 agaaggtcagagagaaggaggcggaagaagaaaagaacagaaaatcaaaccagtactttc 214992552
Query: 1861 tgtcgtcgccggccccctcctcagacccctccatagccgagatctttcagcacctgattg 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214992551 tgtcgtcgccggccccctcctcagacccctccatagccgagatctttcagcacctgattg 214992492
Query: 1921 cctaccatcagg 1932
||||||||||||
Sbjct: 214992491 cctaccatcagg 214992480
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 276 gggcctgagaacaacctgtacagccagtacgaggagaaagtgcggccctgcatcgacctc 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215009273 gggcctgagaacaacctgtacagccagtacgaggagaaagtgcggccctgcatcgacctc 215009214
Query: 336 atcgactcactgcgggccctgggcgtggagcaggacctggccctgcccgccatcgccgtc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215009213 atcgactcactgcgggccctgggcgtggagcaggacctggccctgcccgccatcgccgtc 215009154
Query: 396 atcggggaccagagttcgggcaagagctccgtgctggaggccctgtcaggggtcgctctc 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215009153 atcggggaccagagttcgggcaagagctccgtgctggaggccctgtcaggggtcgctctc 215009094
Query: 456 cccagaggcagcgg 469
||||||||||||||
Sbjct: 215009093 cccagaggcagcgg 215009080
Score = 383 bits (193), Expect = e-103
Identities = 199/201 (99%)
Strand = Plus / Minus
Query: 903 gggatcttgacgaagccggatctggtggacaaaggcactgaggacaagatagtggacgtg 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215001275 gggatcttgacgaagccggatctggtggacaaaggcactgaggacaagatagtggacgtg 215001216
Query: 963 gcgagaaacctggtcttccacccgaagaagggctacatgattgtcaagtgcaggggccag 1022
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 215001215 gcgagaaacctggtcttccacctgaagaagggctacatgattgtcaagtgcaggggccag 215001156
Query: 1023 caggacatccaggaccagctgagcctggccaaggccctgcagaaggagcaggccttcttt 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215001155 caggacatccaggaccagctgagcctggccaaggccctgcagaaggagcaggccttcttt 215001096
Query: 1083 gaaaaccacgcacatttcagg 1103
|||||||||| ||||||||||
Sbjct: 215001095 gaaaaccacgaacatttcagg 215001075
Score = 317 bits (160), Expect = 2e-83
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 1446 ggttatgacgccatatgtaaacaaatccagctcttcgaaaatcagtaccgggggagagag 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214995979 ggttatgacgccatatgtaaacaaatccagctcttcgaaaatcagtaccgggggagagag 214995920
Query: 1506 ttgccagggtttgtgaattataagacatttgaaaccatcattaagaagcaggtcagtgtc 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214995919 ttgccagggtttgtgaattataagacatttgaaaccatcattaagaagcaggtcagtgtc 214995860
Query: 1566 ctggaagagccagccgtggacatgctgcacacagtgactg 1605
||||||||||||||||||||||||||||||||||||||||
Sbjct: 214995859 ctggaagagccagccgtggacatgctgcacacagtgactg 214995820
Score = 311 bits (157), Expect = 1e-81
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 608 agcccagattgccatcgctggggaaggcgtgggaatcagtcatgagctaatcagtctgga 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215005783 agcccagattgccatcgctggggaaggcgtgggaatcagtcatgagctaatcagtctgga 215005724
Query: 668 ggtcagctcccctcacgtcccagatctgaccctcatagaccttcctggcatcaccagggt 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215005723 ggtcagctcccctcacgtcccagatctgaccctcatagaccttcctggcatcaccagggt 215005664
Query: 728 agctgtaggcaatcagccatacgacatcgaataccag 764
|||||||||||||||||||||||||||||||||||||
Sbjct: 215005663 agctgtaggcaatcagccatacgacatcgaataccag 215005627
Score = 287 bits (145), Expect = 1e-74
Identities = 166/173 (95%)
Strand = Plus / Minus
Query: 276 gggcctgagaacaacctgtacagccagtacgaggagaaagtgcggccctgcatcgacctc 335
||||| ||||||||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct: 215051508 gggcccgagaacaacctgtacagcccgttcgaggagaaggtgcggccctgcatcgacctc 215051449
Query: 336 atcgactcactgcgggccctgggcgtggagcaggacctggccctgcccgccatcgccgtc 395
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 215051448 atcgactcgctgcgggccctgggcgtggagcaggacctggccctgcccaccatcgccgtc 215051389
Query: 396 atcggggaccagagttcgggcaagagctccgtgctggaggccctgtcaggggt 448
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 215051388 atcggggaccagagttcgggcaagagctccgtgctggaggccctgtcgggggt 215051336
Score = 285 bits (144), Expect = 6e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 1305 aaaatcgatgcatttaatagtgatatcactgctttgatacaaggagaggaactggtggtg 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214996503 aaaatcgatgcatttaatagtgatatcactgctttgatacaaggagaggaactggtggtg 214996444
Query: 1365 gagtacgagtgtcggctgtttaccaagatgcgaaatgagttctgcaaatggagtgctgtg 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214996443 gagtacgagtgtcggctgtttaccaagatgcgaaatgagttctgcaaatggagtgctgtg 214996384
Query: 1425 gttgaaaagaatttcaaaaatggt 1448
||||||||||||||||||||||||
Sbjct: 214996383 gttgaaaagaatttcaaaaatggt 214996360
Score = 283 bits (143), Expect = 2e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 762 cagatcaagtctctgatcaagaagtacatctgtaagcaggagaccatcaacttggtggtg 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215004663 cagatcaagtctctgatcaagaagtacatctgtaagcaggagaccatcaacttggtggtg 215004604
Query: 822 gtcccctgcaacgtggacattgccaccacggaggcgctgcgcatggcccaggaggtggac 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215004603 gtcccctgcaacgtggacattgccaccacggaggcgctgcgcatggcccaggaggtggac 215004544
Query: 882 cccgaaggagacaggaccatcgg 904
|||||||||||||||||||||||
Sbjct: 215004543 cccgaaggagacaggaccatcgg 215004521
Score = 281 bits (142), Expect = 9e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 468 ggaattgtgacaagatgccctcttgtgctgaaattgaaaaaactcgtgaacgaagaagac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215007463 ggaattgtgacaagatgccctcttgtgctgaaattgaaaaaactcgtgaacgaagaagac 215007404
Query: 528 gaatggaagggcaaagtcagttaccgggacagcgagattgagctttcagatgcttcgcag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215007403 gaatggaagggcaaagtcagttaccgggacagcgagattgagctttcagatgcttcgcag 215007344
Query: 588 gtggaaaaggaagtcagcgcag 609
||||||||||||||||||||||
Sbjct: 215007343 gtggaaaaggaagtcagcgcag 215007322
Score = 256 bits (129), Expect = 5e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 148 agctgaactgatcaaggaagaagatggtttattccaactgtgaaagtaaagaacctgatt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215010260 agctgaactgatcaaggaagaagatggtttattccaactgtgaaagtaaagaacctgatt 215010201
Query: 208 cagtttctgcatccaatcacctgttactaaatgggaatgatgaattggtggagaaaagtc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215010200 cagtttctgcatccaatcacctgttactaaatgggaatgatgaattggtggagaaaagtc 215010141
Query: 268 acaaaacag 276
|||||||||
Sbjct: 215010140 acaaaacag 215010132
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 1182 aaaactctgcccctgttagaaaaccaaataaaagagagtcaccagaaaataacagaggag 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214997040 aaaactctgcccctgttagaaaaccaaataaaagagagtcaccagaaaataacagaggag 214996981
Query: 1242 ttacagaagtatggctccgatattccagaggatgaaagcgggaagatgttttttctgata 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214996980 ttacagaagtatggctccgatattccagaggatgaaagcgggaagatgttttttctgata 214996921
Query: 1302 gat 1304
|||
Sbjct: 214996920 gat 214996918
Score = 204 bits (103), Expect = 2e-49
Identities = 133/143 (93%)
Strand = Plus / Minus
Query: 762 cagatcaagtctctgatcaagaagtacatctgtaagcaggagaccatcaacttggtggtg 821
||||||||| | || |||| |||||||||| ||||| ||||||||||||||||||||
Sbjct: 215046523 cagatcaaggcgctcatcaggaagtacatccaggagcagcagaccatcaacttggtggtg 215046464
Query: 822 gtcccctgcaacgtggacattgccaccacggaggcgctgcgcatggcccaggaggtggac 881
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 215046463 gtcccctgcaacgtggacatcgccaccacggaggcgctgcgcatggcccaggaggtggac 215046404
Query: 882 cccgaaggagacaggaccatcgg 904
|||||||||||||||||||||||
Sbjct: 215046403 cccgaaggagacaggaccatcgg 215046381
Score = 163 bits (82), Expect = 6e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 1100 cagggatcttctggaggaagggcgggccacgatcccctgcctggcagaaagactgacctc 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214998664 cagggatcttctggaggaagggcgggccacgatcccctgcctggcagaaagactgacctc 214998605
Query: 1160 tgaactcatcatgcacatctgt 1181
||||||||||||||||||||||
Sbjct: 214998604 tgaactcatcatgcacatctgt 214998583
Score = 155 bits (78), Expect = 1e-34
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 1605 gatttagtccggctcgccttcacagatgtttcagaaacaaattttaatgaatttttcaac 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214993009 gatttagtccggctcgccttcacagatgtttcagaaacaaattttaatgaatttttcaac 214992950
Query: 1665 ctccacagaactgccaag 1682
||||||||||||||||||
Sbjct: 214992949 ctccacagaactgccaag 214992932
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 74 agtgtgggagaacagccctgcatttctgctgacgggtcaacgtcacagcgtcaaagaaaa 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215011282 agtgtgggagaacagccctgcatttctgctgacgggtcaacgtcacagcgtcaaagaaaa 215011223
Query: 134 ggaaggtacatttcag 149
||||||||||||||||
Sbjct: 215011222 ggaaggtacatttcag 215011207
Score = 135 bits (68), Expect = 1e-28
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 1 ggggcgcggctcgcgcggcagaaaagcggaggagcagccagaccccggcgctggtcaccg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215014754 ggggcggggctcgcgcggcagaaaagcggaggagcagccagaccccggcgctggtcaccg 215014695
Query: 61 caccggggacgg 72
||||||||||||
Sbjct: 215014694 caccggggacgg 215014683
Score = 97.6 bits (49), Expect = 3e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 2438 gtataggatactggtccccgcatagcatcatagaagggtcattctggtt 2486
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214989050 gtataggatactggtccccgcatagcatcatagaagggtcattctggtt 214989002
Score = 97.6 bits (49), Expect = 3e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 2438 gtataggatactggtccccgcatagcatcatagaagggtcattctggtt 2486
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215347276 gtataggatactggtccccgcatagcatcatagaagggtcattctggtt 215347324
Score = 83.8 bits (42), Expect = 4e-13
Identities = 114/138 (82%)
Strand = Plus / Minus
Query: 608 agcccagattgccatcgctggggaaggcgtgggaatcagtcatgagctaatcagtctgga 667
||||||| ||||||||||||| || || || ||||| || ||||| |||||||||||
Sbjct: 215048393 agcccaggatgccatcgctgggagcggagttggcatcagccacgagctcatcagtctgga 215048334
Query: 668 ggtcagctcccctcacgtcccagatctgaccctcatagaccttcctggcatcaccagggt 727
||||| |||||| | || ||||| ||||||||||| || ||||| ||||||||||||||
Sbjct: 215048333 ggtcacctccccggaggttccagacctgaccctcatcgatcttcccggcatcaccagggt 215048274
Query: 728 agctgtaggcaatcagcc 745
|| || ||||| |||||
Sbjct: 215048273 ggccgtgggcaaccagcc 215048256
Score = 61.9 bits (31), Expect = 2e-06
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 987 aagaagggctacatgattgtcaagtgcaggggccagcaggacatccaggaccagctgagc 1046
||||||||||||||||| || |||||| | ||||||||||| ||| | || ||||||||
Sbjct: 215041583 aagaagggctacatgatagtgaagtgccgtggccagcaggagatcttgaacaagctgagc 215041524
Query: 1047 ctggccaaggc 1057
|||||| ||||
Sbjct: 215041523 ctggccgaggc 215041513
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 72,963,293
Number of extensions: 584
Number of successful extensions: 584
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 22
Length of query: 2486
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2464
Effective length of database: 2,808,408,574
Effective search space: 6919918726336
Effective search space used: 6919918726336
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)