Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000503
(1269 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209214.1| NADH dehydrogenase subunit 4 [Bos taurus]. 298 7e-81
>ref|YP_209214.1| NADH dehydrogenase subunit 4 [Bos taurus].
Length = 459
Score = 298 bits (763), Expect = 7e-81
Identities = 158/255 (61%), Positives = 184/255 (72%)
Frame = +2
Query: 47 VKIPLYGLHL*LPKAHVEAPIAGSIVLAAVLLKLGGYGIMRITTILNPLTNYIAYPFLML 226
VK+PLYGLHL LPKAHVEAPIAGS+VLAAVLLKLGGYG++RIT ILNP+T+++AYPF+ML
Sbjct: 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITLILNPMTDFMAYPFIML 264
Query: 227 XXXXXXXXXXXCLRQTDLKSLIAYSSVSHIALVIVAIIIQTP*SFIGATALIIAHGLTSS 406
CLRQTDLKSLIAYSSVSH+ALVIVAI+IQTP S++GATAL+IAHGLTSS
Sbjct: 265 SLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSS 324
Query: 407 ILFCLANTNYERVHSRTIILARGXXXXXXXXXXXXXXXXXXNLALPPSINLIGELFIITA 586
+LFCLAN+NYER+HSRT+ILARG NLALPP+INLIGELF++ +
Sbjct: 325 MLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMS 384
Query: 587 SFS*SXXXXXXXXXXXXXXALYSLYILIITQRGKYTHHINNIKPSFTREXXXXXXXXXXX 766
+FS S ALYSLY+LI+TQRGKYT+HINNI PSFTRE
Sbjct: 385 TFSWSNITIILMGVNMVITALYSLYMLIMTQRGKYTYHINNISPSFTRENALMSLHILPL 444
Query: 767 XXXXXXXXXXXGPLY 811
GPLY
Sbjct: 445 LLLTLNPKIILGPLY 459
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,019,886
Number of extensions: 923718
Number of successful extensions: 2997
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2969
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 318
Effective length of database: 14,207,134
Effective search space: 4517868612
Effective search space used: 4517868612
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000503
(1269 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008480.1| NADH dehydrogenase subunit 4 [Canis lupus famil... 303 2e-82
>ref|NP_008480.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris].
Length = 459
Score = 303 bits (776), Expect = 2e-82
Identities = 157/229 (68%), Positives = 180/229 (78%)
Frame = +2
Query: 47 VKIPLYGLHL*LPKAHVEAPIAGSIVLAAVLLKLGGYGIMRITTILNPLTNYIAYPFLML 226
VK+PLYGLHL LPKAHVEAPIAGS+VLAAVLLKLGGYG+MRITT+LNPLTN++AYPF+ML
Sbjct: 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITTLLNPLTNFMAYPFMML 264
Query: 227 XXXXXXXXXXXCLRQTDLKSLIAYSSVSHIALVIVAIIIQTP*SFIGATALIIAHGLTSS 406
CLRQTDLKSLIAYSSVSH+ALVIVA++IQTP S++GATAL+IAHGLTSS
Sbjct: 265 SLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSS 324
Query: 407 ILFCLANTNYERVHSRTIILARGXXXXXXXXXXXXXXXXXXNLALPPSINLIGELFIITA 586
+LFCLAN+NYER+HSRT+ILARG NLALPP+INLIGELF++ +
Sbjct: 325 MLFCLANSNYERIHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMS 384
Query: 587 SFS*SXXXXXXXXXXXXXXALYSLYILIITQRGKYTHHINNIKPSFTRE 733
SFS S ALYSLY+LI TQRGKY+HHI NIKPSFTRE
Sbjct: 385 SFSWSNITIILMGINIIITALYSLYMLITTQRGKYSHHIKNIKPSFTRE 433
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,457,392
Number of extensions: 883637
Number of successful extensions: 3147
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3037
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 318
Effective length of database: 15,374,224
Effective search space: 4889003232
Effective search space used: 4889003232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000503
(1269 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024035.1| NADH dehydrogenase subunit 4 [Homo sapiens]. 272 6e-73
>ref|YP_003024035.1| NADH dehydrogenase subunit 4 [Homo sapiens].
Length = 459
Score = 272 bits (695), Expect = 6e-73
Identities = 142/229 (62%), Positives = 166/229 (72%)
Frame = +2
Query: 47 VKIPLYGLHL*LPKAHVEAPIAGSIVLAAVLLKLGGYGIMRITTILNPLTNYIAYPFLML 226
VK+PLYGLHL LPKAHVEAPIAGS+VLAAVLLKLGGYG+MR+T ILNPLT ++AYPFL+L
Sbjct: 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLVL 264
Query: 227 XXXXXXXXXXXCLRQTDLKSLIAYSSVSHIALVIVAIIIQTP*SFIGATALIIAHGLTSS 406
CLRQTDLKSLIAYSS+SH+ALV+ AI+IQTP SF GA L+IAHGLTSS
Sbjct: 265 SLWGMIMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSS 324
Query: 407 ILFCLANTNYERVHSRTIILARGXXXXXXXXXXXXXXXXXXNLALPPSINLIGELFIITA 586
+LFCLAN+NYER HSR +IL++G NLALPP+INL+GEL ++
Sbjct: 325 LLFCLANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVT 384
Query: 587 SFS*SXXXXXXXXXXXXXXALYSLYILIITQRGKYTHHINNIKPSFTRE 733
+FS S ALYSLY+ TQ G THHINN+KPSFTRE
Sbjct: 385 TFSWSNITLLLTGLNMLVTALYSLYMFTTTQWGSLTHHINNMKPSFTRE 433
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,536,176
Number of extensions: 861891
Number of successful extensions: 3481
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3421
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 318
Effective length of database: 14,835,944
Effective search space: 4717830192
Effective search space used: 4717830192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000503
(1269 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904337.1| NADH dehydrogenase subunit 4 [Mus musculus]. 267 1e-71
>ref|NP_904337.1| NADH dehydrogenase subunit 4 [Mus musculus].
Length = 459
Score = 267 bits (683), Expect = 1e-71
Identities = 137/229 (59%), Positives = 170/229 (74%)
Frame = +2
Query: 47 VKIPLYGLHL*LPKAHVEAPIAGSIVLAAVLLKLGGYGIMRITTILNPLTNYIAYPFLML 226
+K+PLYG+HL LPKAHVEAPIAGS++LAA+LLKLG YG++RI+ IL+PLT Y+AYPF++L
Sbjct: 205 IKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKLGSYGMIRISIILDPLTKYMAYPFILL 264
Query: 227 XXXXXXXXXXXCLRQTDLKSLIAYSSVSHIALVIVAIIIQTP*SFIGATALIIAHGLTSS 406
CLRQTDLKSLIAYSSVSH+ALVI +I+IQTP SF+GAT L+IAHGLTSS
Sbjct: 265 SLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIASIMIQTPWSFMGATMLMIAHGLTSS 324
Query: 407 ILFCLANTNYERVHSRTIILARGXXXXXXXXXXXXXXXXXXNLALPPSINLIGELFIITA 586
+LFCLAN+NYER+HSRT+I+ARG NLALPPSINL+GELFI +
Sbjct: 325 LLFCLANSNYERIHSRTMIMARGLQMVFPLMATWWLMASLANLALPPSINLMGELFITMS 384
Query: 587 SFS*SXXXXXXXXXXXXXXALYSLYILIITQRGKYTHHINNIKPSFTRE 733
FS S +YS+Y++I TQRGK T+H+ N++PS TRE
Sbjct: 385 LFSWSNFTIILMGINIIITGMYSMYMIITTQRGKLTNHMINLQPSHTRE 433
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,825,460
Number of extensions: 726095
Number of successful extensions: 2597
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2571
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 319
Effective length of database: 12,493,815
Effective search space: 3985526985
Effective search space used: 3985526985
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000503
(1269 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008643.1| NADH dehydrogenase subunit 4 [Sus scrofa]. 316 2e-86
>ref|NP_008643.1| NADH dehydrogenase subunit 4 [Sus scrofa].
Length = 459
Score = 316 bits (810), Expect = 2e-86
Identities = 174/255 (68%), Positives = 185/255 (72%)
Frame = +2
Query: 47 VKIPLYGLHL*LPKAHVEAPIAGSIVLAAVLLKLGGYGIMRITTILNPLTNYIAYPFLML 226
VK+PLYGLHL LPKAHVEAPIAGS+VLAAVLLKLGGYG+MRITTILNPLTNY+AYPFLML
Sbjct: 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITTILNPLTNYMAYPFLML 264
Query: 227 XXXXXXXXXXXCLRQTDLKSLIAYSSVSHIALVIVAIIIQTP*SFIGATALIIAHGLTSS 406
CLRQTDLKSLIAYSSVSH+ALVIVAI+IQTP SF+GATAL+IAHGLTSS
Sbjct: 265 SMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSS 324
Query: 407 ILFCLANTNYERVHSRTIILARGXXXXXXXXXXXXXXXXXXNLALPPSINLIGELFIITA 586
+LFCLANTNYERVHSRT+ILARG NLALPPSINLIGELFIITA
Sbjct: 325 MLFCLANTNYERVHSRTMILARGLQTLLPLMATWWLMASLTNLALPPSINLIGELFIITA 384
Query: 587 SFS*SXXXXXXXXXXXXXXALYSLYILIITQRGKYTHHINNIKPSFTREXXXXXXXXXXX 766
SFS S ALYSLY+LI TQRGKYTHHINNIK SFTRE
Sbjct: 385 SFSWSNITIILMGMNMMITALYSLYMLITTQRGKYTHHINNIKASFTRENALMALHILPL 444
Query: 767 XXXXXXXXXXXGPLY 811
GPLY
Sbjct: 445 LLLTLNPKMILGPLY 459
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,656,044
Number of extensions: 718118
Number of successful extensions: 1816
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1793
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 321
Effective length of database: 8,804,438
Effective search space: 2826224598
Effective search space used: 2826224598
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000503
(1269 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1063 0.0
Sscrofa_Chr17 365 4e-98
Sscrofa_Chr14 202 3e-49
Sscrofa_Chr05 188 5e-45
Sscrofa_Chr13 186 2e-44
Sscrofa_ChrX 182 3e-43
Sscrofa_Chr07 141 1e-30
>Sscrofa_Chr02
|| Length = 162569375
Score = 1063 bits (536), Expect = 0.0
Identities = 742/810 (91%), Gaps = 3/810 (0%)
Strand = Plus / Plus
Query: 3 gatcaaacatttttatatgattagcatgcatcatagccttcatagtaaaaatacctctat 62
||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| || |
Sbjct: 120057355 gatcaaatatttttatatgactagcatgcatcatggccttcatagtaaaaataccactgt 120057414
Query: 63 acggactccatctttgactgccaaaagcccatgtagaagcccctattgcaggttcaatag 122
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120057415 atggactccacctttgactgccaaaagcccatgtagaagcccctattgcaggttcaatag 120057474
Query: 123 tacttgcagccgtactgctaaaactcggaggctatggcataatgcgaatcactactattc 182
|||||||||||||||||||||| || ||||||||||| ||||| ||||| || |||||||
Sbjct: 120057475 tacttgcagccgtactgctaaagcttggaggctatggtataatacgaattaccactattc 120057534
Query: 183 taaacccactaacaaactacatagcctatccattcctcatgctttccatatgaggtataa 242
||||||||||||||||||||||||| || ||||| || || ||||||||||| || ||||
Sbjct: 120057535 taaacccactaacaaactacatagcttacccatttcttatactttccatatggggcataa 120057594
Query: 243 tcataaccagctctatctgcttacgtcaaaccgacctaaaatccttaatcgcttattcat 302
| |||||||||||||| |||||||||||||| |||||||||||| |||| ||||| ||||
Sbjct: 120057595 ttataaccagctctatttgcttacgtcaaactgacctaaaatccctaattgcttactcat 120057654
Query: 303 cagtaagtcatatagcacttgtaatcgtagcaatcataattcaaaccccctgaagcttca 362
||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 120057655 cagtaagccatatagcacttgtaattgtagcaatcataattcaaaccccccgaagcttca 120057714
Query: 363 taggagccacagctctcataattgcccacggactaacatcctccatactattctgcctag 422
|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 120057715 taggagccacagctcttataatcgcccacggattaacatcctccatactattctgcctag 120057774
Query: 423 ccaacactaactatgaacgagtacacagccgaaccataatcctagcccgaggactgcaaa 482
| || |||||||| ||||||||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 120057775 ctaatactaactacgaacgagtacatagtcgaactataatcctagcccgaggactacaaa 120057834
Query: 483 cactcctaccactcatagcaacatgatgactaatagcaagcctcacaaacctagccctac 542
|| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 120057835 cattcctaccacttatagcaacatgatgactaatagcaagcctcacaaatctagccctac 120057894
Query: 543 ccccatccatcaatctaatcggagaattatttatcattacagcatcattttcatgatcca 602
|||||||||||||| |||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 120057895 ccccatccatcaatttaattggagaattattcatcattacagcatcattttcctgatcca 120057954
Query: 603 acatcacaattattctcataggaataaacataataattacagctctctactctctctaca 662
|||||||||||||||| |||||| |||| ||| |||||||||| ||||||||||||||||
Sbjct: 120057955 acatcacaattattcttataggactaaatatactaattacagccctctactctctctaca 120058014
Query: 663 tactaattattacacaacgaggaaaatacacccaccacattaacaacatcaaaccctcat 722
|||||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||
Sbjct: 120058015 tactaattataacacaacgaggaaaatatacccaccccatt---aacatcaaaccctcat 120058071
Query: 723 tcacacgagaaaacgccctcatagccctacatattctaccactactactactgaccttaa 782
| ||||||||||| || || |||||| ||||||| ||||| ||| |||||||||| |||
Sbjct: 120058072 ttacacgagaaaatgctcttatagccttacatatcctaccgctattactactgactctaa 120058131
Query: 783 accctaaaataatcctaggacccctttact 812
||||||||||||| ||||||||||||||||
Sbjct: 120058132 accctaaaataattctaggacccctttact 120058161
Score = 1035 bits (522), Expect = 0.0
Identities = 739/810 (91%), Gaps = 1/810 (0%)
Strand = Plus / Minus
Query: 3 gatcaaacatttttatatgattagcatgcatcatagccttcatagtaaaaatacctctat 62
||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct: 96267750 gatcaaatatttttatatgactagcatgcatcatggccttcatagtaaaaataccactat 96267691
Query: 63 acggactccatctttgactgccaaaagcccatgtagaagcccctattgcaggttcaatag 122
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 96267690 atggactccacctttgactgccaaaagcccatgtagaagcccccattgcaggttcaatag 96267631
Query: 123 tacttgcagccgtactgctaaaactcggaggctatggcataatgcgaatcactactattc 182
||||||||||| |||||||||| || ||||||||||| ||||| ||||| || |||||||
Sbjct: 96267630 tacttgcagccatactgctaaagcttggaggctatggtataatacgaattaccactattc 96267571
Query: 183 taaacccactaacaaactacatagcctatccattcctcatgctttccatatgaggtataa 242
||||||||||||||||||||||||| || ||||| || || |||||||||||||| || |
Sbjct: 96267570 taaacccactaacaaactacatagcttacccatttcttatactttccatatgaggcatga 96267511
Query: 243 tcataaccagctctatctgcttacgtcaaaccgacctaaaatccttaatcgcttattcat 302
| |||||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||
Sbjct: 96267510 ttataaccagctctatttgcttacgtcaaactgacctaaaatccctaatcgcttactcat 96267451
Query: 303 cagtaagtcatatagcacttgtaatcgtagcaatcataattcaaaccccctgaagcttca 362
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 96267450 cagtaagccatatagcacttgtaattgtagcaatcataattcaaaccccctgaagcttca 96267391
Query: 363 taggagccacagctctcataattgcccacggactaacatcctccatactattctgcctag 422
||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 96267390 taggagctacagctcttataatcgcccacggactaacatcctccatactattctgcctgg 96267331
Query: 423 ccaacactaactatgaacgagtacacagccgaaccataatcctagcccgaggactgcaaa 482
| || ||||| || ||||||||||||| ||||| ||||||||||||||||| | ||||
Sbjct: 96267330 ctaatactaattacaaacgagtacacagtcgaactataatcctagcccgagggttacaaa 96267271
Query: 483 cactcctaccactcatagcaacatgatgactaatagcaagcctcacaaacctagccctac 542
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 96267270 cattcctaccactcatagcaacatgatgactaatagcaagcctcacaaatctagccctac 96267211
Query: 543 ccccatccatcaatctaatcggagaattatttatcattacagcatcattttcatgatcca 602
|||||||||||||| |||| |||||||| || ||||| |||||||||||||| |||||||
Sbjct: 96267210 ccccatccatcaatttaattggagaattgttcatcatcacagcatcattttcctgatcca 96267151
Query: 603 acatcacaattattctcataggaataaacataataattacagctctctactctctctaca 662
|||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 96267150 acatcacaattattcttataggaataaatataataattacagccctctactctctctaca 96267091
Query: 663 tactaattattacacaacgaggaaaatacacccaccacattaacaacatcaaaccctcat 722
|||||| ||| ||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 96267090 tactaa-tataacacaacgaggaaaatatacccaccacattaacaacagcaaaccctcat 96267032
Query: 723 tcacacgagaaaacgccctcatagccctacatattctaccactactactactgaccttaa 782
| ||| ||||||| || || ||| || ||||||| |||||| || |||||||||| |||
Sbjct: 96267031 ttacatgagaaaatgctcttataaccttacatatcctaccattattactactgactctaa 96266972
Query: 783 accctaaaataatcctaggacccctttact 812
||||||||||||| ||||| ||||||||||
Sbjct: 96266971 accctaaaataattctagggcccctttact 96266942
>Sscrofa_Chr17
|| Length = 69701581
Score = 365 bits (184), Expect = 4e-98
Identities = 563/689 (81%), Gaps = 4/689 (0%)
Strand = Plus / Plus
Query: 3 gatcaaacatttttatatgattagcatgcatcatagccttcatagtaaaaatacctctat 62
||||||| || || |||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct: 15219649 gatcaaatatcttcatatgattagcatgtattatagccttcatagtaaaaataccactat 15219708
Query: 63 acggactccatctttgactgccaaaagcccatgtagaagcccctattgcaggttcaatag 122
||||||| ||||||||| | || ||||||||||| ||||||| ||| ||||| |||||||
Sbjct: 15219709 acggacttcatctttgattacccaaagcccatgtggaagcccgtatcgcaggctcaatag 15219768
Query: 123 tacttgcagccgtactgctaaaactcggaggctatggcataatgcgaatcactactattc 182
||||||||||||| || ||||||| |||||||| |||||| ||| | ||| | ||||
Sbjct: 15219769 tacttgcagccgtcctattaaaacttggaggctacggcatactgcaggtgactgccattc 15219828
Query: 183 taaacccactaacaaactacatagcctatccattcctcatgctttccatatgaggtataa 242
| ||||||||||||| || ||||||||| ||||| | | || ||| | || || ||||
Sbjct: 15219829 tcaacccactaacaagcttcatagcctacccatttttaacactctccctgtggggcataa 15219888
Query: 243 tcataaccagctctatctgcttacgtcaaaccgacctaaaatccttaatcgcttattcat 302
||||||||||||| |||| |||| | |||| | |||| |||||| |||| || | ||||
Sbjct: 15219889 tcataaccagctcaatcttcttaggccaaatcaacctgaaatccccaatcactcactcat 15219948
Query: 303 cagtaagtcatatagcacttgtaatcgtagcaatcataattcaaaccccctgaagcttca 362
||||||||||||||||||||||||| ||||||| | |||| |||||||| |||||||| |
Sbjct: 15219949 cagtaagtcatatagcacttgtaattgtagcaagcctaatccaaaccccatgaagcttta 15220008
Query: 363 taggagccacagctctcataattgcccacggactaacatcctccatactattctgcctag 422
||| || ||||| || |||||||||||||| |||||| || |||| ||||||| | |
Sbjct: 15220009 tagaggcaacagccctaataattgcccacggcttaacattgtctataccattctgcttcg 15220068
Query: 423 ccaacactaactatgaacgagtacacagccgaaccataatcctagcccgaggactgcaaa 482
| ||||| ||||| || | ||||| || |||||||| ||||||||||| || || || |
Sbjct: 15220069 caaacaccaactacgagcacgtacatagtcgaaccatgatcctagcccggggcctacaga 15220128
Query: 483 cactcctaccactcatagcaacatgatgactaat----agcaagcctcacaaacctagcc 538
|| | |||||||| | |||||||||||| |||| |||||||||| ||||||||||
Sbjct: 15220129 catttctaccacttacggcaacatgatgattaatagcaagcaagcctcgcaaacctagct 15220188
Query: 539 ctacccccatccatcaatctaatcggagaattatttatcattacagcatcattttcatga 598
||||||||| |||| || ||||| |||||| | || ||||| ||||||||||| || |||
Sbjct: 15220189 ctacccccaaccattaacctaattggagaactcttcatcatcacagcatcattctcctga 15220248
Query: 599 tccaacatcacaattattctcataggaataaacataataattacagctctctactctctc 658
|| || ||||| || || ||||||||| | | || |||| |||| ||| ||||||||
Sbjct: 15220249 tctaatatcaccatcatcctcataggactcagtatgctaatcacagttctatactctctg 15220308
Query: 659 tacatactaattattacacaacgaggaaa 687
|| || ||||||| || |||||||||||
Sbjct: 15220309 tatatgctaattacaacccaacgaggaaa 15220337
>Sscrofa_Chr14
|| Length = 153851969
Score = 202 bits (102), Expect = 3e-49
Identities = 205/238 (86%), Gaps = 1/238 (0%)
Strand = Plus / Plus
Query: 233 tgaggtataatcataaccagctctatctgcttacgtcaaaccgacctaaaatccttaatc 292
||||| ||||||||||||||||| | |||||||| ||||||||| | |||||| || ||
Sbjct: 43110063 tgaggcataatcataaccagctcaacctgcttacaccaaaccgacttgaaatccctagtc 43110122
Query: 293 gcttattcatcagt-aagtcatatagcacttgtaatcgtagcaatcataattcaaacccc 351
|||| |||||||| ||||||||||||||||||||| | ||||||| |||| ||||||||
Sbjct: 43110123 gctttctcatcagttaagtcatatagcacttgtaattgcagcaatcctaatccaaacccc 43110182
Query: 352 ctgaagcttcataggagccacagctctcataattgcccacggactaacatcctccatact 411
|||||||| |||||||| |||||||| |||| || |||||| |||||||||| || |
Sbjct: 43110183 atgaagctttataggagcaacagctctaataactggccacggcttaacatcctctatgat 43110242
Query: 412 attctgcctagccaacactaactatgaacgagtacacagccgaaccataatcctagcc 469
||||||||| || ||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 43110243 attctgcctcgcaaacactaactatgaacgcctacatagccgaaccataatgctagcc 43110300
>Sscrofa_Chr05
|| Length = 111506441
Score = 188 bits (95), Expect = 5e-45
Identities = 161/183 (87%)
Strand = Plus / Plus
Query: 356 agcttcataggagccacagctctcataattgcccacggactaacatcctccatactattc 415
||||||||||| || ||||| || ||| | ||||||||| |||||||||||||| |||||
Sbjct: 53826134 agcttcataggggcaacagccctaatagtcgcccacggattaacatcctccatattattc 53826193
Query: 416 tgcctagccaacactaactatgaacgagtacacagccgaaccataatcctagcccgagga 475
|||||||| ||||| ||||| || |||||||||||| |||||||||||||||| ||||
Sbjct: 53826194 tgcctagcaaacaccaactaggagtgagtacacagccaaaccataatcctagcctgaggc 53826253
Query: 476 ctgcaaacactcctaccactcatagcaacatgatgactaatagcaagcctcacaaaccta 535
||||||||| | |||||||||||||||||||| ||| ||||||||||||| |||||| ||
Sbjct: 53826254 ctgcaaacatttctaccactcatagcaacatggtgattaatagcaagccttacaaactta 53826313
Query: 536 gcc 538
|||
Sbjct: 53826314 gcc 53826316
>Sscrofa_Chr13
|| Length = 218635234
Score = 186 bits (94), Expect = 2e-44
Identities = 217/259 (83%), Gaps = 8/259 (3%)
Strand = Plus / Minus
Query: 552 tcaatctaatcggagaattatttatcattacagcatcattttcatgatccaacatcacaa 611
||||| |||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 112014519 tcaatttaatcggagaattattcattatcacagcatcattttcctgatccaa-------- 112014468
Query: 612 ttattctcataggaataaacataataattacagctctctactctctctacatactaatta 671
|||||||||||||| | || ||| |||||||||| |||||||| ||||| ||||||||||
Sbjct: 112014467 ttattctcataggactgaatatactaattacagccctctactccctctatatactaatta 112014408
Query: 672 ttacacaacgaggaaaatacacccaccacattaacaacatcaaaccctcattcacacgag 731
||||||||||||||||| || ||| |||| ||||| ||||| ||||||||||||||||
Sbjct: 112014407 caacacaacgaggaaaatatacacactacatcaacaatatcaagccctcattcacacgag 112014348
Query: 732 aaaacgccctcatagccctacatattctaccactactactactgaccttaaaccctaaaa 791
|||| | || || ||||| || |||| ||||||||| |||||||| | ||||||||||
Sbjct: 112014347 aaaatgttcttatggccctccaccttctgccactactattactgaccctgaaccctaaaa 112014288
Query: 792 taatcctaggaccccttta 810
|||| ||||| ||||||||
Sbjct: 112014287 taattctagggccccttta 112014269
>Sscrofa_ChrX
|| Length = 144288218
Score = 182 bits (92), Expect = 3e-43
Identities = 263/320 (82%)
Strand = Plus / Plus
Query: 488 ctaccactcatagcaacatgatgactaatagcaagcctcacaaacctagccctaccccca 547
|||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct: 23484444 ctaccactcatagcaacatgatgactaatagcaagccttacaaactgagctctaccccca 23484503
Query: 548 tccatcaatctaatcggagaattatttatcattacagcatcattttcatgatccaacatc 607
||| || ||||| |||||| |||| ||||| ||||||||||| || ||| || |||
Sbjct: 23484504 atcattaacctaattggagaactattcatcatcacagcatcattctcccaatctaatatc 23484563
Query: 608 acaattattctcataggaataaacataataattacagctctctactctctctacatacta 667
| || || ||||||||| | ||||| ||||||||| || |||| ||||| ||||||
Sbjct: 23484564 gccatcatcctcataggacttaacatgttaattacagtcctacactccctctatatacta 23484623
Query: 668 attattacacaacgaggaaaatacacccaccacattaacaacatcaaaccctcattcaca 727
|||| ||||||||||||||||| || || || || |||||||||||||| || ||||||
Sbjct: 23484624 attacaacacaacgaggaaaatatactcatcatatcaacaacatcaaaccatccttcaca 23484683
Query: 728 cgagaaaacgccctcatagccctacatattctaccactactactactgaccttaaaccct 787
| ||||| || || || ||||| ||| | ||||||||| ||||||| ||| ||||||||
Sbjct: 23484684 catgaaaatgctcttatggccctccatctcctaccactattactactaaccctaaaccct 23484743
Query: 788 aaaataatcctaggacccct 807
|| | |||| |||| |||||
Sbjct: 23484744 aagacaatcttagggcccct 23484763
>Sscrofa_Chr07
|| Length = 134764511
Score = 141 bits (71), Expect = 1e-30
Identities = 116/131 (88%)
Strand = Plus / Minus
Query: 679 acgaggaaaatacacccaccacattaacaacatcaaaccctcattcacacgagaaaacgc 738
|||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||| ||
Sbjct: 104314891 acgaggaaaatacacccaccacattaacaatatcaaaccttcatttacacaagaaaatgc 104314832
Query: 739 cctcatagccctacatattctaccactactactactgaccttaaaccctaaaataatcct 798
|| ||||||||||| | |||||||||||||||||||| |||||||||||| ||| ||
Sbjct: 104314831 tcttatagccctacacctcctaccactactactactgactctaaaccctaaaacaattct 104314772
Query: 799 aggaccccttt 809
||| |||||||
Sbjct: 104314771 agggccccttt 104314761
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,111,754
Number of extensions: 153
Number of successful extensions: 153
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 10
Length of query: 1269
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1248
Effective length of database: 2,808,413,156
Effective search space: 3504899618688
Effective search space used: 3504899618688
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)