Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000504
(1763 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_786971.2| guanine nucleotide-binding protein G(I)/G(S)/G(... 671 0.0
Alignment gi|NP_001091030.1| guanine nucleotide-binding protein G(I)/G(S)... 623 e-178
Alignment gi|NP_001092503.1| guanine nucleotide-binding protein subunit b... 620 e-177
Alignment gi|NP_001179276.1| guanine nucleotide-binding protein G(I)/G(S)... 586 e-167
Alignment gi|XP_002687911.1| PREDICTED: guanine nucleotide-binding protei... 586 e-167
Alignment gi|NP_001092540.1| guanine nucleotide-binding protein subunit b... 360 2e-99
Alignment gi|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus]. 119 9e-27
Alignment gi|NP_001029502.1| U4/U6 small nuclear ribonucleoprotein Prp4 [... 110 5e-24
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 106 8e-23
Alignment gi|NP_001033649.1| POC1 centriolar protein homolog A [Bos tauru... 103 5e-22
>ref|NP_786971.2| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Bos
taurus].
Length = 340
Score = 671 bits (1731), Expect = 0.0
Identities = 327/340 (96%), Positives = 327/340 (96%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 72.8 bits (177), Expect = 9e-13
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++++ REG R + GH ++ C F + N T S D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-CRFLDDNQIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ T++ + S+S + RL ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A ATGS D+ ++++ R Q
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Score = 51.2 bits (121), Expect = 3e-06
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 1/167 (0%)
Frame = +3
Query: 831 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 1010
+ ++ D+RL VS + D +WD S + + P+GN A G
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 1011 DATCRLFDLRADQELMTYSHDNI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 1187
D C +++L+ + + S + G S ++ D C +WD +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177
Query: 1188 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTG 1328
GH V L + D +G+ D+ K+W+ R+ TG
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
>ref|NP_001091030.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 [Bos
taurus].
Length = 340
Score = 623 bits (1607), Expect = e-178
Identities = 298/340 (87%), Positives = 313/340 (92%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQIRDARKAC D+TL+QIT +DPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQI+TSSGDTTCALWDIE
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPD R FVSGACDAS KLWDVR+ MCRQTF GHESDINA+ FFPNG A
Sbjct: 181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
F TGSDDATCRLFDLRADQEL+ YSHDNIICGITSV+FS+SGRLLLAGYDDFNCN+WDA+
Sbjct: 241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 70.1 bits (170), Expect = 6e-12
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++ + REG R + GH ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC-CRFLDDNQIITSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + ++ + + S+S + GR ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A TGS D+ ++++ R Q
Sbjct: 222 FIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQ 259
>ref|NP_001092503.1| guanine nucleotide-binding protein subunit beta-4 [Bos taurus].
Length = 340
Score = 620 bits (1598), Expect = e-177
Identities = 298/340 (87%), Positives = 314/340 (92%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQI+DARKAC DATL QIT+N+D VGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWG DSRLLVSASQDGKLIIWDSYTTNK+HAIPLRSSWVMTCAYAPSGNYVACGGLDNI
Sbjct: 61 MHWGYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIYNLKTREGNVRVSREL GHTGYLSCCRFLDD+QIVTSSGDTTCALWDIE
Sbjct: 121 CSIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTAF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSL+PD R FVSGACDAS+KLWD+R+GMCRQ+FTGH SDINA+ FFPNG A
Sbjct: 181 TGHSGDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
FATGSDDATCRLFDLRADQEL+ YSHDNIICGITSV+FSKSGRLLLAGYDDFNCNVWD L
Sbjct: 241 FATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTL 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL+IWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN 340
Score = 64.3 bits (155), Expect = 3e-10
Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D +V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++++ REG R + GH ++ C F + + T S D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELPGHTGYLSC-CRFLDDSQIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ ++ + + S+S S R ++G D + +WD
Sbjct: 164 TTCALWDIETAQQTTAFTGHS--GDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQS 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH + ++ + +G A ATGS D+ ++++ R Q
Sbjct: 222 FTGHVSDINAVSFFPNGYAFATGSDDATCRLFDLRADQ 259
Score = 52.0 bits (123), Expect = 2e-06
Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 1/159 (0%)
Frame = +3
Query: 855 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 1034
D+RL VS + D +WD S + + P+GN A G D C +++
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1035 LRADQELMTYSHDNI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 1211
L+ + + S + G S ++ D C +WD A + GH
Sbjct: 126 LKTREGNVRVSRELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTAFTGHSG 185
Query: 1212 RVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTG 1328
V L ++ D +G+ D+ K+W+ R + TG
Sbjct: 186 DVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTG 224
>ref|NP_001179276.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 [Bos
taurus].
Length = 340
Score = 586 bits (1510), Expect = e-167
Identities = 273/340 (80%), Positives = 305/340 (89%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
M E++QLRQEAEQLK QI DARKACAD TL+++ + ++ VGR+QMRTRRTLRGHLAKIYA
Sbjct: 1 MGEMEQLRQEAEQLKKQIADARKACADTTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHW TDS+LLVSASQDGKLI+WD+YTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDN+
Sbjct: 61 MHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIY+LK+REGNV+VSREL+ HTGYLSCCRFLDDN IVTSSGDTTCALWDIE
Sbjct: 121 CSIYSLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
D MSL+++PD RLF+SGACDASAKLWDVREG CRQTFTGHESDINAICFFPNG A
Sbjct: 181 VGHTGDCMSLAVSPDFRLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
TGSDDA+CRLFDLRADQEL TY+H++IICGITSV+FS SGRLL AGYDDFNCNVWD++
Sbjct: 241 ICTGSDDASCRLFDLRADQELTTYAHESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSM 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K +R G+L+GHDNRVSCLGVT DGMAVATGSWDSFLKIWN
Sbjct: 301 KCERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN 340
Score = 68.9 bits (167), Expect = 1e-11
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++ + REG + + + H ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNMCSIYSLKSREGNVKVSRELSAHTGYLSC-CRFLDDNNIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + C S++ S RL ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQKTVFVGHTGDC--MSLAVSPDFRLFISGACDASAKLWDVREGTCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A+ TGS D+ ++++ R Q
Sbjct: 222 FTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQ 259
Score = 54.7 bits (130), Expect = 3e-07
Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 1/219 (0%)
Frame = +3
Query: 831 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 1010
+ ++ A D++L VS + D +WD S + + P+GN A G
Sbjct: 58 IYAMHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGL 117
Query: 1011 DATCRLFDLRADQELMTYSHD-NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 1187
D C ++ L++ + + S + + G S ++ D C +WD +
Sbjct: 118 DNMCSIYSLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQK 177
Query: 1188 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTGRPFQPGSVTVIAF 1367
V GH L V+ D +G+ D+ K+W+ R+ TG + I F
Sbjct: 178 TVFVGHTGDCMSLAVSPDFRLFISGACDASAKLWDVREGTCRQTFTG---HESDINAICF 234
Query: 1368 PTHPLTRTPCTPSGLPKGKIFSLHYCRNQEHNSH*EQSL 1484
P CT S ++F L +QE ++ +S+
Sbjct: 235 --FPNGEAICTGSDDASCRLFDLR--ADQELTTYAHESI 269
>ref|XP_002687911.1| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit
beta-3-like [Bos taurus].
Length = 340
Score = 586 bits (1510), Expect = e-167
Identities = 273/340 (80%), Positives = 305/340 (89%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
M E++QLRQEAEQLK QI DARKACAD TL+++ + ++ VGR+QMRTRRTLRGHLAKIYA
Sbjct: 1 MGEMEQLRQEAEQLKKQIADARKACADTTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHW TDS+LLVSASQDGKLI+WD+YTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDN+
Sbjct: 61 MHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIY+LK+REGNV+VSREL+ HTGYLSCCRFLDDN IVTSSGDTTCALWDIE
Sbjct: 121 CSIYSLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
D MSL+++PD RLF+SGACDASAKLWDVREG CRQTFTGHESDINAICFFPNG A
Sbjct: 181 VGHTGDCMSLAVSPDFRLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
TGSDDA+CRLFDLRADQEL TY+H++IICGITSV+FS SGRLL AGYDDFNCNVWD++
Sbjct: 241 ICTGSDDASCRLFDLRADQELTTYAHESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSM 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K +R G+L+GHDNRVSCLGVT DGMAVATGSWDSFLKIWN
Sbjct: 301 KCERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN 340
Score = 68.9 bits (167), Expect = 1e-11
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++ + REG + + + H ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNMCSIYSLKSREGNVKVSRELSAHTGYLSC-CRFLDDNNIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + C S++ S RL ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQKTVFVGHTGDC--MSLAVSPDFRLFISGACDASAKLWDVREGTCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A+ TGS D+ ++++ R Q
Sbjct: 222 FTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQ 259
Score = 54.7 bits (130), Expect = 3e-07
Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 1/219 (0%)
Frame = +3
Query: 831 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 1010
+ ++ A D++L VS + D +WD S + + P+GN A G
Sbjct: 58 IYAMHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGL 117
Query: 1011 DATCRLFDLRADQELMTYSHD-NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 1187
D C ++ L++ + + S + + G S ++ D C +WD +
Sbjct: 118 DNMCSIYSLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQK 177
Query: 1188 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTGRPFQPGSVTVIAF 1367
V GH L V+ D +G+ D+ K+W+ R+ TG + I F
Sbjct: 178 TVFVGHTGDCMSLAVSPDFRLFISGACDASAKLWDVREGTCRQTFTG---HESDINAICF 234
Query: 1368 PTHPLTRTPCTPSGLPKGKIFSLHYCRNQEHNSH*EQSL 1484
P CT S ++F L +QE ++ +S+
Sbjct: 235 --FPNGEAICTGSDDASCRLFDLR--ADQELTTYAHESI 269
>ref|NP_001092540.1| guanine nucleotide-binding protein subunit beta-5 [Bos taurus].
Length = 353
Score = 360 bits (925), Expect = 2e-99
Identities = 176/341 (51%), Positives = 227/341 (66%), Gaps = 5/341 (1%)
Frame = +3
Query: 282 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 461
L L+ EAE LK ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 12 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 71
Query: 462 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 641
D R LVS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 72 CKDKRRLVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 131
Query: 642 YNLK--TREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIEXXXXXXXX 812
Y L E + +A HT YLS C F + D QI+T+SGD TCALWD+E
Sbjct: 132 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 191
Query: 813 XXXXXDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 986
DV+ L LAP FVSG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 192 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSG 251
Query: 987 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 1166
+AFA+GSDDATCRL+DLRAD+E+ YS ++II G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 252 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 311
Query: 1167 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1289
LK R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 312 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 352
>ref|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].
Length = 415
Score = 119 bits (298), Expect = 9e-27
Identities = 91/384 (23%), Positives = 152/384 (39%), Gaps = 46/384 (11%)
Frame = +3
Query: 276 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAM 455
+++ L +E ++ + I +R + ++ N + + + LR H+ + +
Sbjct: 39 TDVSALVEEIQKAEPLITASRSDQVKLLIQRLQNKLGQHSNHKFYLFKVLRAHILPLTNV 98
Query: 456 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNYVACGGLDNI 632
++ S D +WD+ + ++H + + V A+ P G+ +A G D
Sbjct: 99 ALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKT 158
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDIEXXXXXXX 809
C +++++T + GHT + C F + +V T S DTT LWDI+
Sbjct: 159 CKLWSVETG----KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFT 214
Query: 810 XXXXXXDVMSLSLAP------------------------------------------DTR 863
+++SLS D
Sbjct: 215 LTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCS 274
Query: 864 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 1043
L ++G+ D + KLWD G C T TGH+ +I CF G AT S D T R+F A
Sbjct: 275 LILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSA-A 333
Query: 1044 DQELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 1217
+E +T H+ I+ +SF+ G LL G D +WDA VL GH + +
Sbjct: 334 TRECVTKLEGHEG---EISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEI 390
Query: 1218 SCLGVTDDGMAVATGSWDSFLKIW 1289
G + TGS D+ +IW
Sbjct: 391 FSCAFNYKGDIIITGSKDNTCRIW 414
Score = 109 bits (272), Expect = 9e-24
Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 8/260 (3%)
Frame = +3
Query: 537 KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN------LKTREGNVRVSRELAGH 698
+ H +PL + A SG+ G D C +++ L T EG+ V +A +
Sbjct: 89 RAHILPLTN-----VALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFN 143
Query: 699 TGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSG 878
Y ++I T S D TC LW +E +++ LS P + L +G
Sbjct: 144 NPY--------GDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATG 195
Query: 879 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 1058
+ D +AKLWD++ G T TGH ++I ++ F +GN TGS D T +++ AD
Sbjct: 196 SMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWE--ADTGRK 253
Query: 1059 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCLGV 1232
Y+ I+S F+ L+L G D C +WDA+ L GHD+ + SC
Sbjct: 254 VYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDY 313
Query: 1233 TDDGMAVATGSWDSFLKIWN 1292
T G +AT S D +I++
Sbjct: 314 T--GKLIATASADGTARIFS 331
>ref|NP_001029502.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Bos taurus].
Length = 521
Score = 110 bits (274), Expect = 5e-24
Identities = 77/289 (26%), Positives = 127/289 (43%), Gaps = 11/289 (3%)
Frame = +3
Query: 456 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG---------NYV 608
H+ +S++L +A G +W N +H + ++ V + P N
Sbjct: 237 HFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLA 296
Query: 609 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDI 785
+C D +++L + E ++ GHT ++ + + + T+ D + LWD+
Sbjct: 297 SCAA-DGSVKLWSLDSDEPVA----DIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDL 351
Query: 786 EXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 965
E V ++ D L +G DA ++WD+R G C GH +I
Sbjct: 352 EAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYG 411
Query: 966 ICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYD 1142
I F PNG ATGS D TC+++DLR + + T +H N++ G+ G LL G
Sbjct: 412 INFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPI--HGNFLLTGAY 469
Query: 1143 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1289
D +W LAGH+ +V L ++ DG +AT S+D K+W
Sbjct: 470 DNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518
Score = 69.7 bits (169), Expect = 8e-12
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 9/209 (4%)
Frame = +3
Query: 708 LSCCRFLDDNQIV-TSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRL------ 866
+S C F +++++ T+ C LW + +V ++ P + +
Sbjct: 233 ISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKD 292
Query: 867 --FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 1040
S A D S KLW + GH + + + P+G T D + RL+DL
Sbjct: 293 VNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLE 352
Query: 1041 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 1220
A +E++ ++ G+ ++F + G L G D VWD L GH +
Sbjct: 353 AQEEILHQEGHSM--GVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIY 410
Query: 1221 CLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
+ + +G +ATGS D+ K+W+ RQ++
Sbjct: 411 GINFSPNGYHIATGSGDNTCKVWDLRQRR 439
Score = 67.8 bits (164), Expect = 3e-11
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 2/205 (0%)
Frame = +3
Query: 423 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 602
+ GH ++ + W R L + D +WD ++ S V A+ G+
Sbjct: 318 IEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGS 377
Query: 603 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALW 779
GGLD +++L+T R L GH + F + I T SGD TC +W
Sbjct: 378 LAGTGGLDAFGRVWDLRTG----RCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVW 433
Query: 780 DIEXXXXXXXXXXXXXDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 956
D+ V + P ++GA D +AK+W +T GHE
Sbjct: 434 DLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGK 493
Query: 957 INAICFFPNGNAFATGSDDATCRLF 1031
+ + +G AT S D T +L+
Sbjct: 494 VMGLDISSDGQLIATCSYDRTFKLW 518
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 106 bits (264), Expect = 8e-23
Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 4/251 (1%)
Frame = +3
Query: 570 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-GYLSCCRFLDDNQIV 746
V + ++P+G ++A D + I+ + + + ++GH G D N +V
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 747 TSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 926
++S D T +WD+ V + P + L VSG+ D S ++WDV+ G C
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 927 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 1106
+T H ++A+ F +G+ + S D CR++D + Q L T D+ ++ V F
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKF 222
Query: 1107 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV---TDDGMAVATGSWDSF 1277
S +G+ +LA D +WD K GH N C+ G + +GS D+
Sbjct: 223 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 282
Query: 1278 LKIWN*RQQQV 1310
+ IWN + +++
Sbjct: 283 VYIWNLQTKEI 293
Score = 98.2 bits (243), Expect = 2e-20
Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 7/226 (3%)
Frame = +3
Query: 393 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 572
G + +T+ GH I + W +DS LLVSAS D L IWD + + + S++V
Sbjct: 73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 573 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 749
C + P N + G D I+++KT + + L H+ +S F D + IV+
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 188
Query: 750 SSGDTTCALWDIEXXXXXXXXXXXXXDVMS-LSLAPDTRLFVSGACDASAKLWDVREGMC 926
SS D C +WD +S + +P+ + ++ D + KLWD +G C
Sbjct: 189 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248
Query: 927 RQTFTGHESDINAICFFPN-----GNAFATGSDDATCRLFDLRADQ 1049
+T+TGH+++ C F N G +GS+D +++L+ +
Sbjct: 249 LKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Score = 91.7 bits (226), Expect = 2e-18
Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 5/295 (1%)
Frame = +3
Query: 420 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 599
TL GH + ++ + + L S+S D + IW +Y I + A++
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 600 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCAL 776
N + D I+++ + + + L GH+ Y+ CC F N IV+ S D + +
Sbjct: 100 NLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 777 WDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES- 953
WD++ V ++ D L VS + D ++WD G C +T ++
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215
Query: 954 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLL 1130
++ + F PNG + D T +L+D + L TY+ H N I + G+ ++
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 1131 AGYDDFNCNVWDALKADRAGVLAGHDNRV--SCLGVTDDGMAVATGSWDSFLKIW 1289
+G +D +W+ + L GH + V + T++ +A A D +K+W
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>ref|NP_001033649.1| POC1 centriolar protein homolog A [Bos taurus].
Length = 407
Score = 103 bits (257), Expect = 5e-22
Identities = 79/332 (23%), Positives = 131/332 (39%), Gaps = 1/332 (0%)
Frame = +3
Query: 417 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 596
R +GH + ++ + +++ L S S D L++W + + V ++PS
Sbjct: 13 RHFKGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSPS 72
Query: 597 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCA 773
G+ +A G D I+ + +G V R HT + F D Q VT+S D T
Sbjct: 73 GHLLASGSRDKTVRIW-VPNVKGESTVFR---AHTATVRSVHFCSDGQSFVTASDDKTVK 128
Query: 774 LWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 953
+W V +PD RL VS + D + KLWD C ++ H
Sbjct: 129 VWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGG 188
Query: 954 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 1133
+ + F P+G A D T +++D+R + L Y + + ++SF SG L+
Sbjct: 189 FVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHS--AAVNALSFHPSGNYLVT 246
Query: 1134 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVD 1313
D + D ++ L GH + + + G A+G D + +W VD
Sbjct: 247 ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDIVD 306
Query: 1314 AAGTGRPFQPGSVTVIAFPTHPLTRTPCTPSG 1409
R +P + + T P P P G
Sbjct: 307 YGEVLRVQRPPATRASSSGTLPEV-DPLVPPG 337
Score = 75.9 bits (185), Expect = 1e-13
Identities = 57/255 (22%), Positives = 102/255 (40%), Gaps = 1/255 (0%)
Frame = +3
Query: 675 VSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLA 851
+ R GH ++ F L+ Q+ + S D+ +W ++ V ++ +
Sbjct: 11 LERHFKGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFS 70
Query: 852 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 1031
P L SG+ D + ++W F H + + ++ F +G +F T SDD T +++
Sbjct: 71 PSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVW 130
Query: 1032 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 1211
+ L + S I + FS GRL+++ DD +WD + H
Sbjct: 131 STHRQKFLFSLSQH--INWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGG 188
Query: 1212 RVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTGRPFQPGSVTVIAFPTHPLTRT 1391
V+ + G +A D+ +K+W+ R ++ + +Q S V A HP
Sbjct: 189 FVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRL-----LQHYQLHSAAVNALSFHPSGNY 243
Query: 1392 PCTPSGLPKGKIFSL 1436
T S KI L
Sbjct: 244 LVTASSDSTLKILDL 258
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,109,990
Number of extensions: 1701740
Number of successful extensions: 8974
Number of sequences better than 1.0e-05: 122
Number of HSP's gapped: 7863
Number of HSP's successfully gapped: 296
Length of query: 587
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 479
Effective length of database: 14,107,870
Effective search space: 6757669730
Effective search space used: 6757669730
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000504
(1763 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003236.1| guanine nucleotide-binding protein G(I)/G(S)... 671 0.0
Alignment gi|XP_859294.1| PREDICTED: similar to guanine nucleotide-bindin... 623 e-178
Alignment gi|XP_536861.2| PREDICTED: similar to guanine nucleotide-bindin... 623 e-178
Alignment gi|XP_849538.1| PREDICTED: similar to guanine nucleotide-bindin... 623 e-178
Alignment gi|XP_545211.1| PREDICTED: similar to guanine nucleotide-bindin... 620 e-177
Alignment gi|XP_859256.1| PREDICTED: similar to guanine nucleotide-bindin... 615 e-176
Alignment gi|NP_001003004.1| guanine nucleotide-binding protein G(I)/G(S)... 580 e-165
Alignment gi|XP_855554.1| PREDICTED: transducin beta-3-subunit [Canis fam... 579 e-165
Alignment gi|XP_859132.1| PREDICTED: similar to guanine nucleotide-bindin... 545 e-155
Alignment gi|XP_859172.1| PREDICTED: similar to guanine nucleotide-bindin... 501 e-142
>ref|NP_001003236.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
[Canis lupus familiaris].
Length = 340
Score = 671 bits (1731), Expect = 0.0
Identities = 327/340 (96%), Positives = 327/340 (96%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 72.8 bits (177), Expect = 1e-12
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++++ REG R + GH ++ C F + N T S D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-CRFLDDNQIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ T++ + S+S + RL ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A ATGS D+ ++++ R Q
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Score = 51.2 bits (121), Expect = 3e-06
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 1/167 (0%)
Frame = +3
Query: 831 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 1010
+ ++ D+RL VS + D +WD S + + P+GN A G
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 1011 DATCRLFDLRADQELMTYSHDNI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 1187
D C +++L+ + + S + G S ++ D C +WD +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177
Query: 1188 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTG 1328
GH V L + D +G+ D+ K+W+ R+ TG
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
>ref|XP_859294.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 8 [Canis familiaris].
Length = 340
Score = 623 bits (1607), Expect = e-178
Identities = 298/340 (87%), Positives = 313/340 (92%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQIRDARKAC D+TL+QIT +DPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQI+TSSGDTTCALWDIE
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPD R FVSGACDAS KLWDVR+ MCRQTF GHESDINA+ FFPNG A
Sbjct: 181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
F TGSDDATCRLFDLRADQEL+ YSHDNIICGITSV+FS+SGRLLLAGYDDFNCN+WDA+
Sbjct: 241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 70.1 bits (170), Expect = 6e-12
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++ + REG R + GH ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC-CRFLDDNQIITSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + ++ + + S+S + GR ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A TGS D+ ++++ R Q
Sbjct: 222 FIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQ 259
>ref|XP_536861.2| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 1 [Canis familiaris].
Length = 340
Score = 623 bits (1607), Expect = e-178
Identities = 298/340 (87%), Positives = 313/340 (92%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQIRDARKAC D+TL+QIT +DPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQI+TSSGDTTCALWDIE
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPD R FVSGACDAS KLWDVR+ MCRQTF GHESDINA+ FFPNG A
Sbjct: 181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
F TGSDDATCRLFDLRADQEL+ YSHDNIICGITSV+FS+SGRLLLAGYDDFNCN+WDA+
Sbjct: 241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 70.1 bits (170), Expect = 6e-12
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++ + REG R + GH ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC-CRFLDDNQIITSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + ++ + + S+S + GR ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A TGS D+ ++++ R Q
Sbjct: 222 FIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQ 259
>ref|XP_849538.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 2 [Canis familiaris].
Length = 340
Score = 623 bits (1607), Expect = e-178
Identities = 298/340 (87%), Positives = 313/340 (92%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQIRDARKAC D+TL+QIT +DPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQI+TSSGDTTCALWDIE
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPD R FVSGACDAS KLWDVR+ MCRQTF GHESDINA+ FFPNG A
Sbjct: 181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
F TGSDDATCRLFDLRADQEL+ YSHDNIICGITSV+FS+SGRLLLAGYDDFNCN+WDA+
Sbjct: 241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 70.1 bits (170), Expect = 6e-12
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++ + REG R + GH ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC-CRFLDDNQIITSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + ++ + + S+S + GR ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A TGS D+ ++++ R Q
Sbjct: 222 FIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQ 259
>ref|XP_545211.1| PREDICTED: similar to guanine nucleotide-binding protein, beta-4
subunit [Canis familiaris].
Length = 340
Score = 620 bits (1598), Expect = e-177
Identities = 298/340 (87%), Positives = 314/340 (92%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQI+DARKAC DATL QIT+N+D VGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIQDARKACNDATLIQITSNMDSVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWG DSRLLVSASQDGKLIIWDSYTTNK+HAIPLRSSWVMTCAYAPSGNYVACGGLDNI
Sbjct: 61 MHWGYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIYNLKTREGNVRVSREL GHTGYLSCCRFLDD+QIVTSSGDTTCALWDIE
Sbjct: 121 CSIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTTF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSL+PD R FVSGACDAS+KLWD+R+GMCRQ+FTGH SDINA+ FFPNG A
Sbjct: 181 TGHSGDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
FATGSDDATCRLFDLRADQEL+ YSHDNIICGITSV+FSKSGRLLLAGYDDFNCNVWD L
Sbjct: 241 FATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTL 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL+IWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN 340
Score = 66.2 bits (160), Expect = 9e-11
Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D +V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++++ REG R + GH ++ C F + + T S D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELPGHTGYLSC-CRFLDDSQIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ T++ + + S+S S R ++G D + +WD
Sbjct: 164 TTCALWDIETAQQTTTFTGHS--GDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQS 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH + ++ + +G A ATGS D+ ++++ R Q
Sbjct: 222 FTGHVSDINAVSFFPNGYAFATGSDDATCRLFDLRADQ 259
Score = 52.0 bits (123), Expect = 2e-06
Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 1/159 (0%)
Frame = +3
Query: 855 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 1034
D+RL VS + D +WD S + + P+GN A G D C +++
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1035 LRADQELMTYSHDNI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 1211
L+ + + S + G S ++ D C +WD A + GH
Sbjct: 126 LKTREGNVRVSRELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTTFTGHSG 185
Query: 1212 RVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTG 1328
V L ++ D +G+ D+ K+W+ R + TG
Sbjct: 186 DVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTG 224
>ref|XP_859256.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 7 [Canis familiaris].
Length = 351
Score = 615 bits (1585), Expect = e-176
Identities = 298/351 (84%), Positives = 313/351 (89%), Gaps = 11/351 (3%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQIRDARKAC D+TL+QIT +DPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTG-----------YLSCCRFLDDNQIVTSSGDTTCALW 779
CSIY+LKTREGNVRVSREL GHTG YLSCCRFLDDNQI+TSSGDTTCALW
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGERDLAGLWRCRYLSCCRFLDDNQIITSSGDTTCALW 180
Query: 780 DIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 959
DIE DVMSLSLAPD R FVSGACDAS KLWDVR+ MCRQTF GHESDI
Sbjct: 181 DIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDI 240
Query: 960 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 1139
NA+ FFPNG AF TGSDDATCRLFDLRADQEL+ YSHDNIICGITSV+FS+SGRLLLAGY
Sbjct: 241 NAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGY 300
Query: 1140 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
DDFNCN+WDA+K DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 DDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 67.4 bits (163), Expect = 4e-11
Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 15/228 (6%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGH--ESDINAI--------CFFPN 983
AP G D ++ + REG R + GH E D+ + C F +
Sbjct: 105 YAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGERDLAGLWRCRYLSCCRFLD 164
Query: 984 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 1163
N T S D TC L+D+ Q+ + ++ + + S+S + GR ++G D + +W
Sbjct: 165 DNQIITSSGDTTCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLW 222
Query: 1164 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
D + GH++ ++ + +G A TGS D+ ++++ R Q
Sbjct: 223 DVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQ 270
>ref|NP_001003004.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3
[Canis lupus familiaris].
Length = 340
Score = 580 bits (1494), Expect = e-165
Identities = 269/340 (79%), Positives = 303/340 (89%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
M E++QLRQEAEQLK QI DARKACAD TL+++ + ++ VGR+QMRTRRTLRGHLAKIYA
Sbjct: 1 MGEMEQLRQEAEQLKKQIADARKACADTTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHW TDS+LLVSASQDGKLI+WD+YTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDN+
Sbjct: 61 MHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIY+LK+REGNV+VSREL+ HTGYLSCCRFLDDN IVTSSGDTTCALWDIE
Sbjct: 121 CSIYSLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
D MSL+++PD +LF+SGACDASAKLWDVREG CRQTFTGHESDINAICFFPNG A
Sbjct: 181 VGHTGDCMSLAVSPDFKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
TGSDDA+CRLFDLRADQEL YS ++IICGITSV+FS SGRLL AGYDDFNCN+WD++
Sbjct: 241 ICTGSDDASCRLFDLRADQELTAYSDESIICGITSVAFSLSGRLLFAGYDDFNCNIWDSM 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K +R G+L+GHDNRVSCLGVT DGMAVATGSWDSFLK+WN
Sbjct: 301 KGERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKVWN 340
Score = 68.2 bits (165), Expect = 2e-11
Identities = 55/238 (23%), Positives = 102/238 (42%), Gaps = 5/238 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++ + REG + + + H ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNMCSIYSLKSREGNVKVSRELSAHTGYLSC-CRFLDDNNIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + C S++ S +L ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQKTVFVGHTGDC--MSLAVSPDFKLFISGACDASAKLWDVREGTCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTGRPFQPGSVTVIAF 1367
GH++ ++ + +G A+ TGS D+ ++++ R Q A + G +T +AF
Sbjct: 222 FTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSDESIICG-ITSVAF 278
>ref|XP_855554.1| PREDICTED: transducin beta-3-subunit [Canis familiaris].
Length = 340
Score = 579 bits (1493), Expect = e-165
Identities = 269/340 (79%), Positives = 303/340 (89%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
M E++QLRQEAEQLK QI DARKACAD TL+++ + ++ VGR+QMRTRRTLRGHLAKIYA
Sbjct: 1 MGEMEQLRQEAEQLKKQIADARKACADITLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHW TDS+LLVSASQDGKLI+WD+YTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDN+
Sbjct: 61 MHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIY+LK+REGNV+VSREL+ HTGYLSCCRFLDDN IVTSSGDTTCALWDIE
Sbjct: 121 CSIYSLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
D MSL+++PD +LF+SGACDASAKLWDVREG CRQTFTGHESDINAICFFPNG A
Sbjct: 181 VGHTGDCMSLAVSPDFKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
TGSDDA+CRLFDLRADQEL YS ++IICGITSV+FS SGRLL AGYDDFNCN+WD++
Sbjct: 241 ICTGSDDASCRLFDLRADQELTAYSDESIICGITSVAFSLSGRLLFAGYDDFNCNIWDSM 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K +R G+L+GHDNRVSCLGVT DGMAVATGSWDSFLK+WN
Sbjct: 301 KGERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKVWN 340
Score = 68.2 bits (165), Expect = 2e-11
Identities = 55/238 (23%), Positives = 102/238 (42%), Gaps = 5/238 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++ + REG + + + H ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNMCSIYSLKSREGNVKVSRELSAHTGYLSC-CRFLDDNNIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + C S++ S +L ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQKTVFVGHTGDC--MSLAVSPDFKLFISGACDASAKLWDVREGTCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTGRPFQPGSVTVIAF 1367
GH++ ++ + +G A+ TGS D+ ++++ R Q A + G +T +AF
Sbjct: 222 FTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSDESIICG-ITSVAF 278
>ref|XP_859132.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 4 [Canis familiaris].
Length = 332
Score = 545 bits (1405), Expect = e-155
Identities = 273/359 (76%), Positives = 288/359 (80%), Gaps = 19/359 (5%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQIRDARKAC D+TL+QIT +DPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHT-------------------GYLSCCRFLDDNQIVTSS 755
CSIY+LKTREGNVRVSREL GHT GYLSCCRFLDDNQI+TSS
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGGGAVLPAVRDSADQPLSPGYLSCCRFLDDNQIITSS 180
Query: 756 GDTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 935
GDTTCALWDIE DVMSLSLAPD R FVSGACDAS KLWDVR+ MCRQT
Sbjct: 181 GDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQT 240
Query: 936 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 1115
F GHESDINA+ L+ YSHDNIICGITSV+FS+S
Sbjct: 241 FIGHESDINAVA---------------------------LLMYSHDNIICGITSVAFSRS 273
Query: 1116 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
GRLLLAGYDDFNCN+WDA+K DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 274 GRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 332
Score = 50.8 bits (120), Expect = 4e-06
Identities = 40/199 (20%), Positives = 70/199 (35%), Gaps = 20/199 (10%)
Frame = +3
Query: 831 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 1010
+ ++ D+RL VS + D +WD S + + P+GN A G
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGL 117
Query: 1011 DATCRLFDL-------RADQELMTYSHDNIIC-------------GITSVSFSKSGRLLL 1130
D C ++ L R +EL ++ + G S ++
Sbjct: 118 DNICSIYSLKTREGNVRVSRELPGHTGGGAVLPAVRDSADQPLSPGYLSCCRFLDDNQII 177
Query: 1131 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQV 1310
D C +WD + AGH V L + DG +G+ D+ +K+W+ R
Sbjct: 178 TSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMC 237
Query: 1311 DAAGTGRPFQPGSVTVIAF 1367
G +V ++ +
Sbjct: 238 RQTFIGHESDINAVALLMY 256
>ref|XP_859172.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 5 [Canis familiaris].
Length = 299
Score = 501 bits (1291), Expect = e-142
Identities = 251/340 (73%), Positives = 266/340 (78%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQIRDARKAC D+TL+QIT +DPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKV +P + W
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVEVMP-EAGWGRA------------------ 101
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
TGYLSCCRFLDDNQI+TSSGDTTCALWDIE
Sbjct: 102 ----------------------TGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 139
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPD R FVSGACDAS KLWDVR+ MCRQTF GHESDINA+ FFPNG A
Sbjct: 140 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 199
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
F TGSDDATCRLFDLRADQEL+ YSHDNIICGITSV+FS+SGRLLLAGYDDFNCN+WDA+
Sbjct: 200 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 259
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 260 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 299
Score = 61.6 bits (148), Expect = 2e-09
Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Frame = +3
Query: 831 VMSLSLAPDTRLFVSGACDASAKLWDV----REGMCRQTFTGHESDINAICFFPNGNAFA 998
+ ++ D+RL VS + D +WD + + + G + + C F + N
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVEVMPEAGWGRATGYLSCCRFLDDNQII 117
Query: 999 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 1178
T S D TC L+D+ Q+ + ++ + + S+S + GR ++G D + +WD +
Sbjct: 118 TSSGDTTCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLWDVRDS 175
Query: 1179 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A TGS D+ ++++ R Q
Sbjct: 176 MCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQ 218
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,703,182
Number of extensions: 1729174
Number of successful extensions: 9602
Number of sequences better than 1.0e-05: 146
Number of HSP's gapped: 8288
Number of HSP's successfully gapped: 372
Length of query: 587
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 479
Effective length of database: 15,274,216
Effective search space: 7316349464
Effective search space used: 7316349464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000504
(1763 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002065.1| guanine nucleotide-binding protein G(I)/G(S)/G(... 671 0.0
Alignment gi|NP_005264.2| guanine nucleotide-binding protein G(I)/G(S)/G(... 623 e-178
Alignment gi|NP_067642.1| guanine nucleotide-binding protein subunit beta... 620 e-177
Alignment gi|NP_002066.1| guanine nucleotide-binding protein G(I)/G(S)/G(... 585 e-167
Alignment gi|NP_006569.1| guanine nucleotide-binding protein subunit beta... 360 3e-99
Alignment gi|NP_057278.2| guanine nucleotide-binding protein subunit beta... 360 3e-99
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 117 3e-26
Alignment gi|NP_004688.2| U4/U6 small nuclear ribonucleoprotein Prp4 [Hom... 110 5e-24
Alignment gi|NP_001038941.1| WD repeat-containing protein 38 [Homo sapien... 108 2e-23
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 106 8e-23
>ref|NP_002065.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
[Homo sapiens].
Length = 340
Score = 671 bits (1731), Expect = 0.0
Identities = 327/340 (96%), Positives = 327/340 (96%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 72.8 bits (177), Expect = 1e-12
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++++ REG R + GH ++ C F + N T S D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-CRFLDDNQIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ T++ + S+S + RL ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A ATGS D+ ++++ R Q
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Score = 51.2 bits (121), Expect = 3e-06
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 1/167 (0%)
Frame = +3
Query: 831 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 1010
+ ++ D+RL VS + D +WD S + + P+GN A G
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 1011 DATCRLFDLRADQELMTYSHDNI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 1187
D C +++L+ + + S + G S ++ D C +WD +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177
Query: 1188 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTG 1328
GH V L + D +G+ D+ K+W+ R+ TG
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
>ref|NP_005264.2| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2
[Homo sapiens].
Length = 340
Score = 623 bits (1607), Expect = e-178
Identities = 298/340 (87%), Positives = 313/340 (92%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQIRDARKAC D+TL+QIT +DPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQI+TSSGDTTCALWDIE
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPD R FVSGACDAS KLWDVR+ MCRQTF GHESDINA+ FFPNG A
Sbjct: 181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
F TGSDDATCRLFDLRADQEL+ YSHDNIICGITSV+FS+SGRLLLAGYDDFNCN+WDA+
Sbjct: 241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 70.1 bits (170), Expect = 6e-12
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++ + REG R + GH ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC-CRFLDDNQIITSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + ++ + + S+S + GR ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A TGS D+ ++++ R Q
Sbjct: 222 FIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQ 259
>ref|NP_067642.1| guanine nucleotide-binding protein subunit beta-4 [Homo sapiens].
Length = 340
Score = 620 bits (1598), Expect = e-177
Identities = 298/340 (87%), Positives = 314/340 (92%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQI+DARKAC DATL QIT+N+D VGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWG DSRLLVSASQDGKLIIWDSYTTNK+HAIPLRSSWVMTCAYAPSGNYVACGGLDNI
Sbjct: 61 MHWGYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIYNLKTREGNVRVSREL GHTGYLSCCRFLDD+QIVTSSGDTTCALWDIE
Sbjct: 121 CSIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTTF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSL+PD R FVSGACDAS+KLWD+R+GMCRQ+FTGH SDINA+ FFPNG A
Sbjct: 181 TGHSGDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
FATGSDDATCRLFDLRADQEL+ YSHDNIICGITSV+FSKSGRLLLAGYDDFNCNVWD L
Sbjct: 241 FATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTL 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL+IWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN 340
Score = 66.2 bits (160), Expect = 9e-11
Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D +V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++++ REG R + GH ++ C F + + T S D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELPGHTGYLSC-CRFLDDSQIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ T++ + + S+S S R ++G D + +WD
Sbjct: 164 TTCALWDIETAQQTTTFTGHS--GDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQS 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH + ++ + +G A ATGS D+ ++++ R Q
Sbjct: 222 FTGHVSDINAVSFFPNGYAFATGSDDATCRLFDLRADQ 259
Score = 52.0 bits (123), Expect = 2e-06
Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 1/159 (0%)
Frame = +3
Query: 855 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 1034
D+RL VS + D +WD S + + P+GN A G D C +++
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1035 LRADQELMTYSHDNI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 1211
L+ + + S + G S ++ D C +WD A + GH
Sbjct: 126 LKTREGNVRVSRELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTTFTGHSG 185
Query: 1212 RVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTG 1328
V L ++ D +G+ D+ K+W+ R + TG
Sbjct: 186 DVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTG 224
>ref|NP_002066.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3
[Homo sapiens].
Length = 340
Score = 585 bits (1509), Expect = e-167
Identities = 273/340 (80%), Positives = 305/340 (89%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
M E++QLRQEAEQLK QI DARKACAD TL+++ + ++ VGR+QMRTRRTLRGHLAKIYA
Sbjct: 1 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHW TDS+LLVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDN+
Sbjct: 61 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIYNLK+REGNV+VSREL+ HTGYLSCCRFLDDN IVTSSGDTTCALWDIE
Sbjct: 121 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
D MSL+++PD LF+SGACDASAKLWDVREG CRQTFTGHESDINAICFFPNG A
Sbjct: 181 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
TGSDDA+CRLFDLRADQEL+ +SH++IICGITSV+FS SGRLL AGYDDFNCNVWD++
Sbjct: 241 ICTGSDDASCRLFDLRADQELICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSM 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K++R G+L+GHDNRVSCLGVT DGMAVATGSWDSFLKIWN
Sbjct: 301 KSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN 340
Score = 67.0 bits (162), Expect = 5e-11
Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++++ REG + + + H ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNMCSIYNLKSREGNVKVSRELSAHTGYLSC-CRFLDDNNIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + C S++ S L ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQKTVFVGHTGDC--MSLAVSPDFNLFISGACDASAKLWDVREGTCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A+ TGS D+ ++++ R Q
Sbjct: 222 FTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQ 259
Score = 53.5 bits (127), Expect = 6e-07
Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 1/203 (0%)
Frame = +3
Query: 831 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 1010
+ ++ A D++L VS + D +WD S + + P+GN A G
Sbjct: 58 IYAMHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGL 117
Query: 1011 DATCRLFDLRADQELMTYSHD-NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 1187
D C +++L++ + + S + + G S ++ D C +WD +
Sbjct: 118 DNMCSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQK 177
Query: 1188 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTGRPFQPGSVTVIAF 1367
V GH L V+ D +G+ D+ K+W+ R+ TG + I F
Sbjct: 178 TVFVGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTG---HESDINAICF 234
Query: 1368 PTHPLTRTPCTPSGLPKGKIFSL 1436
P CT S ++F L
Sbjct: 235 --FPNGEAICTGSDDASCRLFDL 255
>ref|NP_006569.1| guanine nucleotide-binding protein subunit beta-5 isoform a [Homo
sapiens].
Length = 353
Score = 360 bits (923), Expect = 3e-99
Identities = 175/341 (51%), Positives = 227/341 (66%), Gaps = 5/341 (1%)
Frame = +3
Query: 282 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 461
L L+ EAE LK ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 12 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 71
Query: 462 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 641
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 72 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 131
Query: 642 YNLK--TREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIEXXXXXXXX 812
Y L E + +A HT YLS C F + D QI+T+SGD TCALWD+E
Sbjct: 132 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 191
Query: 813 XXXXXDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 986
DV+ L LAP FVSG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 192 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSG 251
Query: 987 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 1166
+AFA+GSDDATCRL+DLRAD+E+ YS ++II G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 252 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 311
Query: 1167 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1289
LK R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 312 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 352
>ref|NP_057278.2| guanine nucleotide-binding protein subunit beta-5 isoform b [Homo
sapiens].
Length = 395
Score = 360 bits (923), Expect = 3e-99
Identities = 175/341 (51%), Positives = 227/341 (66%), Gaps = 5/341 (1%)
Frame = +3
Query: 282 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 461
L L+ EAE LK ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 54 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 113
Query: 462 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 641
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 114 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 173
Query: 642 YNLK--TREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIEXXXXXXXX 812
Y L E + +A HT YLS C F + D QI+T+SGD TCALWD+E
Sbjct: 174 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 233
Query: 813 XXXXXDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 986
DV+ L LAP FVSG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 234 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSG 293
Query: 987 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 1166
+AFA+GSDDATCRL+DLRAD+E+ YS ++II G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 294 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 353
Query: 1167 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1289
LK R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 354 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 394
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 117 bits (294), Expect = 3e-26
Identities = 79/293 (26%), Positives = 124/293 (42%), Gaps = 3/293 (1%)
Frame = +3
Query: 420 TLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 596
TL GH +YA+ + + + S D +W T H ++ ++ ++ P
Sbjct: 129 TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQ 188
Query: 597 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCA 773
VA G +D +++++ E L GH+ + F ++I+T S D T
Sbjct: 189 STLVATGSMDTTAKLWDIQNGEEVYT----LRGHSAEIISLSFNTSGDRIITGSFDHTVV 244
Query: 774 LWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 953
+WD + ++ S S D L ++G+ D + KLWD G C T TGH+
Sbjct: 245 VWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDD 304
Query: 954 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLL 1130
+I CF G AT S D T R+F + + H+ I+ +SF+ G LL
Sbjct: 305 EILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEG---EISKISFNPQGNHLL 361
Query: 1131 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1289
G D +WDA VL GH + + G V TGS D+ +IW
Sbjct: 362 TGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNTCRIW 414
Score = 102 bits (253), Expect = 1e-21
Identities = 70/295 (23%), Positives = 129/295 (43%), Gaps = 3/295 (1%)
Frame = +3
Query: 417 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-P 593
+ L+ H+ + + ++ S D +WD+ + +++ + + V A+ P
Sbjct: 86 KVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNP 145
Query: 594 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTC 770
G+ +A G D C +++++T + GHT + C F + +V T S DTT
Sbjct: 146 YGDKIATGSFDKTCKLWSVETG----KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTA 201
Query: 771 ALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 950
LWDI+ +++SLS ++G+ D + +WD G GH
Sbjct: 202 KLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHC 261
Query: 951 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLL 1127
++I++ F + + TGS D TC+L+D + + T + HD+ I F +G+L+
Sbjct: 262 AEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDD---EILDSCFDYTGKLI 318
Query: 1128 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
D ++ A L GH+ +S + G + TGS D +IW+
Sbjct: 319 ATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWD 373
Score = 97.8 bits (242), Expect = 3e-20
Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 1/196 (0%)
Frame = +3
Query: 744 VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLA-PDTRLFVSGACDASAKLWDVREG 920
+T S D TC LWD V +++ P +G+ D + KLW V G
Sbjct: 108 ITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETG 167
Query: 921 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 1100
C TF GH ++I + F P ATGS D T +L+D++ +E+ T + I S+
Sbjct: 168 KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHS--AEIISL 225
Query: 1101 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 1280
SF+ SG ++ G D VWDA + +L GH +S D + TGS D
Sbjct: 226 SFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTC 285
Query: 1281 KIWN*RQQQVDAAGTG 1328
K+W+ + A TG
Sbjct: 286 KLWDATNGKCVATLTG 301
>ref|NP_004688.2| U4/U6 small nuclear ribonucleoprotein Prp4 [Homo sapiens].
Length = 522
Score = 110 bits (274), Expect = 5e-24
Identities = 77/289 (26%), Positives = 127/289 (43%), Gaps = 11/289 (3%)
Frame = +3
Query: 456 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG---------NYV 608
H+ +S++L +A G +W N +H + ++ V + P N
Sbjct: 238 HFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLA 297
Query: 609 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDI 785
+C D +++L + E ++ GHT ++ + + + T+ D + LWD+
Sbjct: 298 SCAA-DGSVKLWSLDSDEPVA----DIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 352
Query: 786 EXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 965
E V ++ D L +G DA ++WD+R G C GH +I
Sbjct: 353 EAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYG 412
Query: 966 ICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYD 1142
I F PNG ATGS D TC+++DLR + + T +H N++ G+ G LL G
Sbjct: 413 INFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPI--HGNFLLTGAY 470
Query: 1143 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1289
D +W LAGH+ +V L ++ DG +AT S+D K+W
Sbjct: 471 DNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 519
Score = 70.9 bits (172), Expect = 4e-12
Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 9/209 (4%)
Frame = +3
Query: 708 LSCCRFLDDNQIV-TSSGDTTCALWDIEXXXXXXXXXXXXXDV--------MSLSLAPDT 860
+S C F +++++ T+ C LW + +V ++SL P
Sbjct: 234 ISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKD 293
Query: 861 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 1040
S A D S KLW + GH + + + P+G T D + RL+DL
Sbjct: 294 VNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLE 353
Query: 1041 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 1220
A +E++ ++ G+ ++F + G L G D VWD L GH +
Sbjct: 354 AQEEILHQEGHSM--GVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIY 411
Query: 1221 CLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
+ + +G +ATGS D+ K+W+ RQ++
Sbjct: 412 GINFSPNGYHIATGSGDNTCKVWDLRQRR 440
Score = 67.8 bits (164), Expect = 3e-11
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 2/205 (0%)
Frame = +3
Query: 423 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 602
+ GH ++ + W R L + D +WD ++ S V A+ G+
Sbjct: 319 IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGS 378
Query: 603 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALW 779
GGLD +++L+T R L GH + F + I T SGD TC +W
Sbjct: 379 LAGTGGLDAFGRVWDLRTG----RCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVW 434
Query: 780 DIEXXXXXXXXXXXXXDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 956
D+ V + P ++GA D +AK+W +T GHE
Sbjct: 435 DLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGK 494
Query: 957 INAICFFPNGNAFATGSDDATCRLF 1031
+ + +G AT S D T +L+
Sbjct: 495 VMGLDISSDGQLIATCSYDRTFKLW 519
>ref|NP_001038941.1| WD repeat-containing protein 38 [Homo sapiens].
Length = 314
Score = 108 bits (270), Expect = 2e-23
Identities = 70/243 (28%), Positives = 113/243 (46%), Gaps = 2/243 (0%)
Frame = +3
Query: 570 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 749
V + A++P G + G D +Y +TR G ++ L GHTG + CRF D +
Sbjct: 24 VNSSAFSPDGQMLLTGSEDGC--VYGWETRSG--QLLWRLGGHTGPVKFCRFSPDGHLFA 79
Query: 750 SSG-DTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 926
S+ D T LWD+ V ++S +PD+R SG D LWDV+ G
Sbjct: 80 SASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQM 139
Query: 927 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVS 1103
+ GH I + F P N ATGS D+T ++DLR +++ + + I+ +
Sbjct: 140 LRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLC 199
Query: 1104 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 1283
+S SG LL +G D ++W + L GH V + + D + +A+ + +K
Sbjct: 200 YSASG-LLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVK 258
Query: 1284 IWN 1292
+W+
Sbjct: 259 VWD 261
Score = 78.6 bits (192), Expect = 2e-14
Identities = 48/203 (23%), Positives = 85/203 (41%)
Frame = +3
Query: 417 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 596
R L+GH + + + DSR L S D ++++WD + + + + + ++P+
Sbjct: 99 RVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPT 158
Query: 597 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 776
N +A G D+ I++L+ V + L GH+ +SC + + + S D T +
Sbjct: 159 VNCLATGSWDSTVHIWDLRMVTPAVS-HQALEGHSANISCLCYSASGLLASGSWDKTIHI 217
Query: 777 WDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 956
W V S++ +PD S K+WD G C +T G
Sbjct: 218 WKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLKGVLDV 277
Query: 957 INAICFFPNGNAFATGSDDATCR 1025
+ F P+G +G+ D T R
Sbjct: 278 AHTCAFTPDGKILVSGAADQTRR 300
Score = 78.2 bits (191), Expect = 2e-14
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 1/158 (0%)
Frame = +3
Query: 828 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 1007
+V S + +PD ++ ++G+ D W+ R G GH + F P+G+ FA+ S
Sbjct: 23 EVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASAS 82
Query: 1008 DDATCRLFDL-RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 1184
D T RL+D+ RA + H + +VSFS R L +G D +WD
Sbjct: 83 CDCTVRLWDVARAKCLRVLKGHQR---SVETVSFSPDSRQLASGGWDKRVMLWDVQSGQM 139
Query: 1185 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*R 1298
+L GH + + + +ATGSWDS + IW+ R
Sbjct: 140 LRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLR 177
Score = 76.3 bits (186), Expect = 9e-14
Identities = 61/285 (21%), Positives = 118/285 (41%), Gaps = 5/285 (1%)
Frame = +3
Query: 432 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 611
H ++ + + D ++L++ S+DG + W++ + + + + V C ++P G+ A
Sbjct: 20 HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFA 79
Query: 612 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIE 788
D ++++ + R L GH + F D++ + S G D LWD++
Sbjct: 80 SASCDCTVRLWDV----ARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQ 135
Query: 789 XXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVR---EGMCRQTFTGHESDI 959
+ S +P +G+ D++ +WD+R + Q GH ++I
Sbjct: 136 SGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANI 195
Query: 960 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAG 1136
+ +C+ +G A+GS D T ++ L+ + + S++FS L AG
Sbjct: 196 SCLCYSASG-LLASGSWDKTIHIWKPTTSSLLIQLK--GHVTWVKSIAFSPDELWLASAG 252
Query: 1137 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 1271
Y VWD L G + T DG + +G+ D
Sbjct: 253 YSRM-VKVWDCNTGKCLETLKGVLDVAHTCAFTPDGKILVSGAAD 296
Score = 57.8 bits (138), Expect = 3e-08
Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 3/244 (1%)
Frame = +3
Query: 423 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 602
L GH + + D L SAS D + +WD + + V T +++P
Sbjct: 59 LGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSR 118
Query: 603 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALW 779
+A GG D ++++++ + + R L GH + F N + T S D+T +W
Sbjct: 119 QLASGGWDKRVMLWDVQSGQ----MLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIW 174
Query: 780 DIEXXXXXXXXXXXXXDVMSLSLA--PDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 953
D+ ++S + L SG+ D + +W GH +
Sbjct: 175 DLRMVTPAVSHQALEGHSANISCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVT 234
Query: 954 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 1133
+ +I F P+ A+ +++D + L T ++ + +F+ G++L++
Sbjct: 235 WVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLK--GVLDVAHTCAFTPDGKILVS 292
Query: 1134 GYDD 1145
G D
Sbjct: 293 GAAD 296
Score = 57.4 bits (137), Expect = 4e-08
Identities = 33/125 (26%), Positives = 54/125 (43%)
Frame = +3
Query: 936 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 1115
F H ++N+ F P+G TGS+D ++ R+ Q L + FS
Sbjct: 17 FGQHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHT--GPVKFCRFSPD 74
Query: 1116 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* 1295
G L + D +WD +A VL GH V + + D +A+G WD + +W+
Sbjct: 75 GHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDV 134
Query: 1296 RQQQV 1310
+ Q+
Sbjct: 135 QSGQM 139
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 106 bits (264), Expect = 8e-23
Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 4/251 (1%)
Frame = +3
Query: 570 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-GYLSCCRFLDDNQIV 746
V + ++P+G ++A D + I+ + + + ++GH G D N +V
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 747 TSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 926
++S D T +WD+ V + P + L VSG+ D S ++WDV+ G C
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 927 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 1106
+T H ++A+ F +G+ + S D CR++D + Q L T D+ ++ V F
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKF 222
Query: 1107 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV---TDDGMAVATGSWDSF 1277
S +G+ +LA D +WD K GH N C+ G + +GS D+
Sbjct: 223 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 282
Query: 1278 LKIWN*RQQQV 1310
+ IWN + +++
Sbjct: 283 VYIWNLQTKEI 293
Score = 98.2 bits (243), Expect = 2e-20
Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 7/226 (3%)
Frame = +3
Query: 393 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 572
G + +T+ GH I + W +DS LLVSAS D L IWD + + + S++V
Sbjct: 73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 573 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 749
C + P N + G D I+++KT + + L H+ +S F D + IV+
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 188
Query: 750 SSGDTTCALWDIEXXXXXXXXXXXXXDVMS-LSLAPDTRLFVSGACDASAKLWDVREGMC 926
SS D C +WD +S + +P+ + ++ D + KLWD +G C
Sbjct: 189 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248
Query: 927 RQTFTGHESDINAICFFPN-----GNAFATGSDDATCRLFDLRADQ 1049
+T+TGH+++ C F N G +GS+D +++L+ +
Sbjct: 249 LKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Score = 91.7 bits (226), Expect = 2e-18
Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 5/295 (1%)
Frame = +3
Query: 420 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 599
TL GH + ++ + + L S+S D + IW +Y I + A++
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 600 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCAL 776
N + D I+++ + + + L GH+ Y+ CC F N IV+ S D + +
Sbjct: 100 NLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 777 WDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES- 953
WD++ V ++ D L VS + D ++WD G C +T ++
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215
Query: 954 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLL 1130
++ + F PNG + D T +L+D + L TY+ H N I + G+ ++
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 1131 AGYDDFNCNVWDALKADRAGVLAGHDNRV--SCLGVTDDGMAVATGSWDSFLKIW 1289
+G +D +W+ + L GH + V + T++ +A A D +K+W
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,392,580
Number of extensions: 1690912
Number of successful extensions: 9070
Number of sequences better than 1.0e-05: 137
Number of HSP's gapped: 7824
Number of HSP's successfully gapped: 316
Length of query: 587
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 479
Effective length of database: 14,737,052
Effective search space: 7059047908
Effective search space used: 7059047908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000504
(1763 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153489.1| guanine nucleotide-binding protein G(I)/G(S)... 671 0.0
Alignment gi|NP_001153488.1| guanine nucleotide-binding protein G(I)/G(S)... 671 0.0
Alignment gi|NP_032168.1| guanine nucleotide-binding protein G(I)/G(S)/G(... 671 0.0
Alignment gi|NP_034442.1| guanine nucleotide-binding protein G(I)/G(S)/G(... 623 e-178
Alignment gi|NP_038559.2| guanine nucleotide-binding protein subunit beta... 611 e-175
Alignment gi|NP_038558.1| guanine nucleotide-binding protein G(I)/G(S)/G(... 583 e-166
Alignment gi|NP_619733.1| guanine nucleotide-binding protein subunit beta... 359 3e-99
Alignment gi|NP_034443.1| guanine nucleotide-binding protein subunit beta... 359 3e-99
Alignment gi|NP_081573.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Mus... 107 3e-23
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 106 7e-23
>ref|NP_001153489.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Mus
musculus].
Length = 340
Score = 671 bits (1731), Expect = 0.0
Identities = 327/340 (96%), Positives = 327/340 (96%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 72.8 bits (177), Expect = 8e-13
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++++ REG R + GH ++ C F + N T S D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-CRFLDDNQIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ T++ + S+S + RL ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A ATGS D+ ++++ R Q
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Score = 51.2 bits (121), Expect = 3e-06
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 1/167 (0%)
Frame = +3
Query: 831 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 1010
+ ++ D+RL VS + D +WD S + + P+GN A G
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 1011 DATCRLFDLRADQELMTYSHDNI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 1187
D C +++L+ + + S + G S ++ D C +WD +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177
Query: 1188 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTG 1328
GH V L + D +G+ D+ K+W+ R+ TG
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
>ref|NP_001153488.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Mus
musculus].
Length = 340
Score = 671 bits (1731), Expect = 0.0
Identities = 327/340 (96%), Positives = 327/340 (96%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 72.8 bits (177), Expect = 8e-13
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++++ REG R + GH ++ C F + N T S D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-CRFLDDNQIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ T++ + S+S + RL ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A ATGS D+ ++++ R Q
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Score = 51.2 bits (121), Expect = 3e-06
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 1/167 (0%)
Frame = +3
Query: 831 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 1010
+ ++ D+RL VS + D +WD S + + P+GN A G
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 1011 DATCRLFDLRADQELMTYSHDNI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 1187
D C +++L+ + + S + G S ++ D C +WD +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177
Query: 1188 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTG 1328
GH V L + D +G+ D+ K+W+ R+ TG
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
>ref|NP_032168.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Mus
musculus].
Length = 340
Score = 671 bits (1731), Expect = 0.0
Identities = 327/340 (96%), Positives = 327/340 (96%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 72.8 bits (177), Expect = 8e-13
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++++ REG R + GH ++ C F + N T S D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-CRFLDDNQIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ T++ + S+S + RL ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A ATGS D+ ++++ R Q
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Score = 51.2 bits (121), Expect = 3e-06
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 1/167 (0%)
Frame = +3
Query: 831 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 1010
+ ++ D+RL VS + D +WD S + + P+GN A G
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 1011 DATCRLFDLRADQELMTYSHDNI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 1187
D C +++L+ + + S + G S ++ D C +WD +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177
Query: 1188 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTG 1328
GH V L + D +G+ D+ K+W+ R+ TG
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
>ref|NP_034442.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 [Mus
musculus].
Length = 340
Score = 623 bits (1607), Expect = e-178
Identities = 298/340 (87%), Positives = 313/340 (92%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQIRDARKAC D+TL+QIT +DPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQI+TSSGDTTCALWDIE
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPD R FVSGACDAS KLWDVR+ MCRQTF GHESDINA+ FFPNG A
Sbjct: 181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
F TGSDDATCRLFDLRADQEL+ YSHDNIICGITSV+FS+SGRLLLAGYDDFNCN+WDA+
Sbjct: 241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 70.1 bits (170), Expect = 5e-12
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++ + REG R + GH ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC-CRFLDDNQIITSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + ++ + + S+S + GR ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A TGS D+ ++++ R Q
Sbjct: 222 FIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQ 259
>ref|NP_038559.2| guanine nucleotide-binding protein subunit beta-4 [Mus musculus].
Length = 340
Score = 611 bits (1576), Expect = e-175
Identities = 293/340 (86%), Positives = 313/340 (92%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQI+DARKAC DATL QIT+N+D VGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWG DSRLLVSASQDGKLIIWDSYTTNK+HAIPLRSSWVMTCAYAPSGNYVACGGLDNI
Sbjct: 61 MHWGYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIYNLKTREGNVRVSREL GHTGYLSCCRFLDD QI+TSSGDTTCALWDIE
Sbjct: 121 CSIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDGQIITSSGDTTCALWDIETGQQTTTF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSL+PD + FVSGACDAS+KLWD+R+GMCRQ+FTGH SDINA+ FFP+G A
Sbjct: 181 TGHSGDVMSLSLSPDLKTFVSGACDASSKLWDIRDGMCRQSFTGHISDINAVSFFPSGYA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
FATGSDDATCRLFDLRADQEL+ YSHDNIICGITSV+FSKSGRLLLAGYDDFNC+VWDAL
Sbjct: 241 FATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCSVWDAL 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K R+GVLAGHDNRVSCLGVTDDGMAVATGSWDSFL+IWN
Sbjct: 301 KGGRSGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN 340
Score = 63.9 bits (154), Expect = 4e-10
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D +V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++++ REG R + GH ++ F +G T S D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDGQII-TSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ T++ + + S+S S + ++G D + +WD
Sbjct: 164 TTCALWDIETGQQTTTFTGHS--GDVMSLSLSPDLKTFVSGACDASSKLWDIRDGMCRQS 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH + ++ + G A ATGS D+ ++++ R Q
Sbjct: 222 FTGHISDINAVSFFPSGYAFATGSDDATCRLFDLRADQ 259
Score = 52.0 bits (123), Expect = 1e-06
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 4/162 (2%)
Frame = +3
Query: 855 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 1034
D+RL VS + D +WD S + + P+GN A G D C +++
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1035 LRADQELMTYSHDNIICGITSV----SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 1202
L+ + + S + + G T F G+++ + D C +WD + G
Sbjct: 126 LKTREGNVRVSRE--LPGHTGYLSCCRFLDDGQIITSS-GDTTCALWDIETGQQTTTFTG 182
Query: 1203 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTG 1328
H V L ++ D +G+ D+ K+W+ R + TG
Sbjct: 183 HSGDVMSLSLSPDLKTFVSGACDASSKLWDIRDGMCRQSFTG 224
>ref|NP_038558.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 [Mus
musculus].
Length = 340
Score = 583 bits (1503), Expect = e-166
Identities = 273/340 (80%), Positives = 303/340 (89%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
M E++QLRQEAEQLK QI DARKACAD TL+++ + ++ VGR+QMRTRRTLRGHLAKIYA
Sbjct: 1 MGEMEQLRQEAEQLKKQIADARKACADITLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHW TDS+LLVSASQDGKLI+WD+YTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDN+
Sbjct: 61 MHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIYNLK+REGNV+VSREL+ HTGYLSCCRFLDDN IVTSSGDTTCALWDIE
Sbjct: 121 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
D MSL+++PD +LF+SGACDASAKLWDVREG CRQTFTGHESDINAICFFPNG A
Sbjct: 181 VGHTGDCMSLAVSPDYKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
TGSDDA+CRLFDLRADQEL YS ++IICGITSV+FS SGRLL AGYDDFNCNVWD+L
Sbjct: 241 ICTGSDDASCRLFDLRADQELTAYSQESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSL 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K +R G+L+GHDNRVSCLGVT DGMAVATGSWDSFLKIWN
Sbjct: 301 KCERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN 340
Score = 68.2 bits (165), Expect = 2e-11
Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++++ REG + + + H ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNMCSIYNLKSREGNVKVSRELSAHTGYLSC-CRFLDDNNIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + C S++ S +L ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQKTVFVGHTGDC--MSLAVSPDYKLFISGACDASAKLWDVREGTCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A+ TGS D+ ++++ R Q
Sbjct: 222 FTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQ 259
Score = 55.8 bits (133), Expect = 1e-07
Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 1/219 (0%)
Frame = +3
Query: 831 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 1010
+ ++ A D++L VS + D +WD S + + P+GN A G
Sbjct: 58 IYAMHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGL 117
Query: 1011 DATCRLFDLRADQELMTYSHD-NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 1187
D C +++L++ + + S + + G S ++ D C +WD +
Sbjct: 118 DNMCSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQK 177
Query: 1188 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTGRPFQPGSVTVIAF 1367
V GH L V+ D +G+ D+ K+W+ R+ TG + I F
Sbjct: 178 TVFVGHTGDCMSLAVSPDYKLFISGACDASAKLWDVREGTCRQTFTG---HESDINAICF 234
Query: 1368 PTHPLTRTPCTPSGLPKGKIFSLHYCRNQEHNSH*EQSL 1484
P CT S ++F L +QE ++ ++S+
Sbjct: 235 --FPNGEAICTGSDDASCRLFDLR--ADQELTAYSQESI 269
>ref|NP_619733.1| guanine nucleotide-binding protein subunit beta-5 isoform 2 [Mus
musculus].
Length = 353
Score = 359 bits (922), Expect = 3e-99
Identities = 174/341 (51%), Positives = 227/341 (66%), Gaps = 5/341 (1%)
Frame = +3
Query: 282 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 461
L L+ EAE LK ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 12 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 71
Query: 462 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 641
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 72 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 131
Query: 642 YNLK--TREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIEXXXXXXXX 812
Y L E + +A HT YLS C F + D QI+T+SGD TCALWD+E
Sbjct: 132 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 191
Query: 813 XXXXXDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 986
DV+ L LAP FVSG CD A +WD+R G C Q F HESD+N++ ++P+G
Sbjct: 192 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 251
Query: 987 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 1166
+AFA+GSDDATCRL+DLRAD+E+ YS ++II G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 252 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 311
Query: 1167 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1289
LK R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 312 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 352
>ref|NP_034443.1| guanine nucleotide-binding protein subunit beta-5 isoform 1 [Mus
musculus].
Length = 395
Score = 359 bits (922), Expect = 3e-99
Identities = 174/341 (51%), Positives = 227/341 (66%), Gaps = 5/341 (1%)
Frame = +3
Query: 282 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 461
L L+ EAE LK ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 54 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 113
Query: 462 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 641
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 114 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 173
Query: 642 YNLK--TREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIEXXXXXXXX 812
Y L E + +A HT YLS C F + D QI+T+SGD TCALWD+E
Sbjct: 174 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 233
Query: 813 XXXXXDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 986
DV+ L LAP FVSG CD A +WD+R G C Q F HESD+N++ ++P+G
Sbjct: 234 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 293
Query: 987 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 1166
+AFA+GSDDATCRL+DLRAD+E+ YS ++II G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 294 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 353
Query: 1167 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1289
LK R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 354 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 394
>ref|NP_081573.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Mus musculus].
Length = 521
Score = 107 bits (267), Expect = 3e-23
Identities = 76/289 (26%), Positives = 127/289 (43%), Gaps = 11/289 (3%)
Frame = +3
Query: 456 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG---------NYV 608
H+ +S++L +A G +W + +H + ++ V + P N
Sbjct: 237 HFSPNSKMLATACWSGLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLA 296
Query: 609 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDI 785
+C D +++L + E ++ GHT ++ + + + T+ D + LWD+
Sbjct: 297 SCAA-DGSVKLWSLDSDEPVA----DIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 351
Query: 786 EXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 965
E V ++ D L +G DA ++WD+R G C GH +I
Sbjct: 352 EAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYG 411
Query: 966 ICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYD 1142
I F PNG ATGS D TC+++DLR + + T +H N++ G+ G LL G
Sbjct: 412 INFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPI--HGDFLLTGAY 469
Query: 1143 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1289
D +W LAGH+ +V L ++ DG +AT S+D K+W
Sbjct: 470 DNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518
Score = 69.7 bits (169), Expect = 7e-12
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 9/209 (4%)
Frame = +3
Query: 708 LSCCRFLDDNQIV-TSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRL------ 866
+S C F +++++ T+ C LW + +V ++ P + +
Sbjct: 233 ISYCHFSPNSKMLATACWSGLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKD 292
Query: 867 --FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 1040
S A D S KLW + GH + + + P+G T D + RL+DL
Sbjct: 293 VNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLE 352
Query: 1041 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 1220
A +E++ ++ G+ ++F + G L G D VWD L GH +
Sbjct: 353 AQEEILHQEGHSM--GVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIY 410
Query: 1221 CLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
+ + +G +ATGS D+ K+W+ RQ++
Sbjct: 411 GINFSPNGYHIATGSGDNTCKVWDLRQRR 439
Score = 67.0 bits (162), Expect = 4e-11
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 2/205 (0%)
Frame = +3
Query: 423 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 602
+ GH ++ + W R L + D +WD ++ S V A+ G+
Sbjct: 318 IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGS 377
Query: 603 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALW 779
GGLD +++L+T R L GH + F + I T SGD TC +W
Sbjct: 378 LAGTGGLDAFGRVWDLRTG----RCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVW 433
Query: 780 DIEXXXXXXXXXXXXXDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 956
D+ V + P ++GA D +AK+W +T GHE
Sbjct: 434 DLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGK 493
Query: 957 INAICFFPNGNAFATGSDDATCRLF 1031
+ + +G AT S D T +L+
Sbjct: 494 VMGLDISSDGQLIATCSYDRTFKLW 518
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 106 bits (264), Expect = 7e-23
Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 4/251 (1%)
Frame = +3
Query: 570 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-GYLSCCRFLDDNQIV 746
V + ++P+G ++A D + I+ + + + ++GH G D N +V
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 747 TSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 926
++S D T +WD+ V + P + L VSG+ D S ++WDV+ G C
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 927 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 1106
+T H ++A+ F +G+ + S D CR++D + Q L T D+ ++ V F
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKF 222
Query: 1107 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV---TDDGMAVATGSWDSF 1277
S +G+ +LA D +WD K GH N C+ G + +GS D+
Sbjct: 223 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 282
Query: 1278 LKIWN*RQQQV 1310
+ IWN + +++
Sbjct: 283 VYIWNLQTKEI 293
Score = 98.2 bits (243), Expect = 2e-20
Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 7/226 (3%)
Frame = +3
Query: 393 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 572
G + +T+ GH I + W +DS LLVSAS D L IWD + + + S++V
Sbjct: 73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 573 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 749
C + P N + G D I+++KT + + L H+ +S F D + IV+
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 188
Query: 750 SSGDTTCALWDIEXXXXXXXXXXXXXDVMS-LSLAPDTRLFVSGACDASAKLWDVREGMC 926
SS D C +WD +S + +P+ + ++ D + KLWD +G C
Sbjct: 189 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248
Query: 927 RQTFTGHESDINAICFFPN-----GNAFATGSDDATCRLFDLRADQ 1049
+T+TGH+++ C F N G +GS+D +++L+ +
Sbjct: 249 LKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Score = 91.7 bits (226), Expect = 2e-18
Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 5/295 (1%)
Frame = +3
Query: 420 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 599
TL GH + ++ + + L S+S D + IW +Y I + A++
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 600 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCAL 776
N + D I+++ + + + L GH+ Y+ CC F N IV+ S D + +
Sbjct: 100 NLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 777 WDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES- 953
WD++ V ++ D L VS + D ++WD G C +T ++
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215
Query: 954 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLL 1130
++ + F PNG + D T +L+D + L TY+ H N I + G+ ++
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 1131 AGYDDFNCNVWDALKADRAGVLAGHDNRV--SCLGVTDDGMAVATGSWDSFLKIW 1289
+G +D +W+ + L GH + V + T++ +A A D +K+W
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,782,147
Number of extensions: 1419506
Number of successful extensions: 7455
Number of sequences better than 1.0e-05: 111
Number of HSP's gapped: 6518
Number of HSP's successfully gapped: 259
Length of query: 587
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 480
Effective length of database: 12,403,707
Effective search space: 5953779360
Effective search space used: 5953779360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000504
(1763 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124417.1| PREDICTED: guanine nucleotide-binding protei... 623 e-179
Alignment gi|NP_001230422.1| guanine nucleotide-binding protein G(I)/G(S)... 583 e-166
Alignment gi|XP_003354523.1| PREDICTED: guanine nucleotide-binding protei... 570 e-162
Alignment gi|XP_003132597.2| PREDICTED: guanine nucleotide-binding protei... 409 e-114
Alignment gi|XP_001924765.1| PREDICTED: guanine nucleotide-binding protei... 360 2e-99
Alignment gi|XP_003360975.1| PREDICTED: guanine nucleotide-binding protei... 146 3e-35
Alignment gi|XP_003353667.1| PREDICTED: LOW QUALITY PROTEIN: u4/U6 small ... 106 4e-23
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 106 5e-23
Alignment gi|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-l... 105 8e-23
Alignment gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l... 105 8e-23
>ref|XP_003124417.1| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit
beta-2-like isoform 2 [Sus scrofa].
Length = 340
Score = 623 bits (1607), Expect = e-179
Identities = 298/340 (87%), Positives = 313/340 (92%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQIRDARKAC D+TL+QIT +DPVGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQI+TSSGDTTCALWDIE
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
DVMSLSLAPD R FVSGACDAS KLWDVR+ MCRQTF GHESDINA+ FFPNG A
Sbjct: 181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
F TGSDDATCRLFDLRADQEL+ YSHDNIICGITSV+FS+SGRLLLAGYDDFNCN+WDA+
Sbjct: 241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 70.1 bits (170), Expect = 4e-12
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++ + REG R + GH ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC-CRFLDDNQIITSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + ++ + + S+S + GR ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A TGS D+ ++++ R Q
Sbjct: 222 FIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQ 259
>ref|NP_001230422.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 [Sus
scrofa].
Length = 340
Score = 583 bits (1502), Expect = e-166
Identities = 272/340 (80%), Positives = 303/340 (89%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
M E++QLRQEAEQLK QI DARKACAD TL+++ + ++ VGR+QMRTRRTLRGHLAKIYA
Sbjct: 1 MGEMEQLRQEAEQLKKQIADARKACADTTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHW TDS+LLVSASQDGKLI+WD+YTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDN+
Sbjct: 61 MHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIY+LK+REGNV+VSREL+ HTGYLSCCRFLDDN IVTSSGDTTCALWDIE
Sbjct: 121 CSIYSLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 992
D MSL+++PD +LF+SGACDASAKLWDVREG CRQTFTGHESDINAICFFPNG A
Sbjct: 181 VGHTGDCMSLAVSPDFKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA 240
Query: 993 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
TGSDDA+CRLFDLRADQEL TYSH++IICGITSV+F SGRLL AGYDDFNCNVWD++
Sbjct: 241 ICTGSDDASCRLFDLRADQELTTYSHESIICGITSVAFPLSGRLLFAGYDDFNCNVWDSM 300
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1292
K +R G L+GHDNRVSCLGVT DGMAVATGSWDSFLKIWN
Sbjct: 301 KCERVGTLSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN 340
Score = 68.9 bits (167), Expect = 8e-12
Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 5/239 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCA 104
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++ + REG + + + H ++ C F + N T S D
Sbjct: 105 YAPSGNFVACGGLDNMCSIYSLKSREGNVKVSRELSAHTGYLSC-CRFLDDNNIVTSSGD 163
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + C S++ S +L ++G D + +WD +
Sbjct: 164 TTCALWDIETGQQKTVFVGHTGDC--MSLAVSPDFKLFISGACDASAKLWDVREGTCRQT 221
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTGRPFQPGSVTVIAFP 1370
GH++ ++ + +G A+ TGS D+ ++++ R Q + G +T +AFP
Sbjct: 222 FTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTTYSHESIICG-ITSVAFP 279
>ref|XP_003354523.1| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit
beta-2-like, partial [Sus scrofa].
Length = 308
Score = 570 bits (1468), Expect = e-162
Identities = 271/308 (87%), Positives = 282/308 (91%)
Frame = +3
Query: 369 ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 548
IT +DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA
Sbjct: 1 ITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 60
Query: 549 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 728
IPLRSSWVMTCAYAPSGN+VACGGLDNICSIY+LKTREGNVRVSREL GHTGYLSCCRFL
Sbjct: 61 IPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL 120
Query: 729 DDNQIVTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWD 908
DDNQI+TSSGDTTCALWDIE DVMSLSLAPD R FVSGACDAS KLWD
Sbjct: 121 DDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWD 180
Query: 909 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 1088
VR+ MCRQTF GHESDINA+ FFPNG AF TGSDDATCRLFDLRADQEL+ YSHDNIICG
Sbjct: 181 VRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICG 240
Query: 1089 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 1268
ITSV+FS+SGRLLLAGYDDFNCN+WDA+K DRAGVLAGHDNRVSCLGVTDDGMAVATGSW
Sbjct: 241 ITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSW 300
Query: 1269 DSFLKIWN 1292
DSFLKIWN
Sbjct: 301 DSFLKIWN 308
Score = 70.1 bits (170), Expect = 4e-12
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 5/218 (2%)
Frame = +3
Query: 669 VRVSRELAGHTGYLSCCRFLDDNQI-VTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLS 845
+R R L GH + + D+++ V++S D +WD VM+ +
Sbjct: 13 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 72
Query: 846 LAPDTRLFVSGACDASAKLWDV--REGMCR--QTFTGHESDINAICFFPNGNAFATGSDD 1013
AP G D ++ + REG R + GH ++ C F + N T S D
Sbjct: 73 YAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC-CRFLDDNQIITSSGD 131
Query: 1014 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 1193
TC L+D+ Q+ + ++ + + S+S + GR ++G D + +WD +
Sbjct: 132 TTCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQT 189
Query: 1194 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
GH++ ++ + +G A TGS D+ ++++ R Q
Sbjct: 190 FIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQ 227
>ref|XP_003132597.2| PREDICTED: guanine nucleotide-binding protein subunit beta-4-like,
partial [Sus scrofa].
Length = 233
Score = 409 bits (1052), Expect = e-114
Identities = 198/232 (85%), Positives = 211/232 (90%)
Frame = +3
Query: 273 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 452
MSEL+QLRQEAEQL+NQI+DARKAC DATL QIT+N+D VGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYA 60
Query: 453 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 632
MHWG DSRLLVSASQDGKLIIWDSYTTNK+HAIPLRSSWVMTCAYAPSGNYVACGGLDNI
Sbjct: 61 MHWGYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 633 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXX 812
CSIYNLKTREGNVRVSREL GHTGYLSCCRFLDD+QIVTSSGDTTCALWDIE
Sbjct: 121 CSIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTTF 180
Query: 813 XXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 968
DVMSLSL+PD R FVSGACDAS+KLWD+R+GMCRQ+FTGH SDINA+
Sbjct: 181 TGHSGDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAV 232
Score = 52.0 bits (123), Expect = 1e-06
Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 1/159 (0%)
Frame = +3
Query: 855 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 1034
D+RL VS + D +WD S + + P+GN A G D C +++
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1035 LRADQELMTYSHDNI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 1211
L+ + + S + G S ++ D C +WD A + GH
Sbjct: 126 LKTREGNVRVSRELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTTFTGHSG 185
Query: 1212 RVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTG 1328
V L ++ D +G+ D+ K+W+ R + TG
Sbjct: 186 DVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTG 224
>ref|XP_001924765.1| PREDICTED: guanine nucleotide-binding protein subunit beta-5-like
[Sus scrofa].
Length = 353
Score = 360 bits (923), Expect = 2e-99
Identities = 175/341 (51%), Positives = 227/341 (66%), Gaps = 5/341 (1%)
Frame = +3
Query: 282 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 461
L L+ EAE LK ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 12 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 71
Query: 462 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 641
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 72 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 131
Query: 642 YNLK--TREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIEXXXXXXXX 812
Y L E + +A HT YLS C F + D QI+T+SGD TCALWD+E
Sbjct: 132 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 191
Query: 813 XXXXXDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 986
DV+ L LAP FVSG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 192 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 251
Query: 987 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 1166
+AFA+GSDDATCRL+DLRAD+E+ YS ++II G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 252 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 311
Query: 1167 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1289
LK R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 312 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 352
>ref|XP_003360975.1| PREDICTED: guanine nucleotide-binding protein subunit beta-4-like
[Sus scrofa].
Length = 95
Score = 146 bits (369), Expect = 3e-35
Identities = 67/71 (94%), Positives = 69/71 (97%)
Frame = +3
Query: 1080 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 1259
ICGITSV+FSKSGRLLLAGYDDFNCNVWD LK DRAGVLAGHDNRVSCLGVTDDGMAVAT
Sbjct: 25 ICGITSVAFSKSGRLLLAGYDDFNCNVWDTLKGDRAGVLAGHDNRVSCLGVTDDGMAVAT 84
Query: 1260 GSWDSFLKIWN 1292
GSWDSFL+IWN
Sbjct: 85 GSWDSFLRIWN 95
>ref|XP_003353667.1| PREDICTED: LOW QUALITY PROTEIN: u4/U6 small nuclear ribonucleoprotein
Prp4-like [Sus scrofa].
Length = 506
Score = 106 bits (265), Expect = 4e-23
Identities = 77/279 (27%), Positives = 123/279 (44%), Gaps = 1/279 (0%)
Frame = +3
Query: 456 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 635
H+ +S++L +A G +W N +H + G+ G +++
Sbjct: 253 HFSPNSKMLATACWSGLCKLWSVPDCNLLHTL--------------RGHNTNVGAIESDE 298
Query: 636 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXXX 815
+ +++ VRV+R + +G RFL T+ D + LWD+E
Sbjct: 299 PVADIEGH--TVRVARVMWHPSG-----RFLG-----TTCYDRSWRLWDLEAQEEILHQE 346
Query: 816 XXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 995
V ++ D L +G DA ++WD+R G C GH +I I F PNG
Sbjct: 347 GHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHI 406
Query: 996 ATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 1172
ATGS D TC+++DLR + + T +H N++ G+ G LL G D +W
Sbjct: 407 ATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPI--HGNFLLTGAYDNTAKIWTHP 464
Query: 1173 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1289
LAGH+ +V L ++ DG +AT S+D K+W
Sbjct: 465 GWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 503
Score = 67.8 bits (164), Expect = 2e-11
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 2/205 (0%)
Frame = +3
Query: 423 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 602
+ GH ++ + W R L + D +WD ++ S V A+ G+
Sbjct: 303 IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGS 362
Query: 603 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALW 779
GGLD +++L+T R L GH + F + I T SGD TC +W
Sbjct: 363 LAGTGGLDAFGRVWDLRTG----RCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVW 418
Query: 780 DIEXXXXXXXXXXXXXDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 956
D+ V + P ++GA D +AK+W +T GHE
Sbjct: 419 DLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGK 478
Query: 957 INAICFFPNGNAFATGSDDATCRLF 1031
+ + +G AT S D T +L+
Sbjct: 479 VMGLDISSDGQLIATCSYDRTFKLW 503
Score = 63.5 bits (153), Expect = 3e-10
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Frame = +3
Query: 849 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI-------------------C 971
+P++++ + KLW V + T GH +++ AI
Sbjct: 255 SPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIESDEPVADIEGHTVRVARVM 314
Query: 972 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 1151
+ P+G T D + RL+DL A +E++ ++ G+ ++F + G L G D
Sbjct: 315 WHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSM--GVYDIAFHQDGSLAGTGGLDAF 372
Query: 1152 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQ 1307
VWD L GH + + + +G +ATGS D+ K+W+ RQ++
Sbjct: 373 GRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRR 424
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 106 bits (264), Expect = 5e-23
Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 4/251 (1%)
Frame = +3
Query: 570 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-GYLSCCRFLDDNQIV 746
V + ++P+G ++A D + I+ + + + ++GH G D N +V
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 747 TSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 926
++S D T +WD+ V + P + L VSG+ D S ++WDV+ G C
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 927 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 1106
+T H ++A+ F +G+ + S D CR++D + Q L T D+ ++ V F
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKF 222
Query: 1107 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV---TDDGMAVATGSWDSF 1277
S +G+ +LA D +WD K GH N C+ G + +GS D+
Sbjct: 223 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 282
Query: 1278 LKIWN*RQQQV 1310
+ IWN + +++
Sbjct: 283 VYIWNLQTKEI 293
Score = 98.2 bits (243), Expect = 1e-20
Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 7/226 (3%)
Frame = +3
Query: 393 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 572
G + +T+ GH I + W +DS LLVSAS D L IWD + + + S++V
Sbjct: 73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 573 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 749
C + P N + G D I+++KT + + L H+ +S F D + IV+
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 188
Query: 750 SSGDTTCALWDIEXXXXXXXXXXXXXDVMS-LSLAPDTRLFVSGACDASAKLWDVREGMC 926
SS D C +WD +S + +P+ + ++ D + KLWD +G C
Sbjct: 189 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248
Query: 927 RQTFTGHESDINAICFFPN-----GNAFATGSDDATCRLFDLRADQ 1049
+T+TGH+++ C F N G +GS+D +++L+ +
Sbjct: 249 LKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Score = 91.7 bits (226), Expect = 1e-18
Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 5/295 (1%)
Frame = +3
Query: 420 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 599
TL GH + ++ + + L S+S D + IW +Y I + A++
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 600 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCAL 776
N + D I+++ + + + L GH+ Y+ CC F N IV+ S D + +
Sbjct: 100 NLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 777 WDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES- 953
WD++ V ++ D L VS + D ++WD G C +T ++
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215
Query: 954 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLL 1130
++ + F PNG + D T +L+D + L TY+ H N I + G+ ++
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 1131 AGYDDFNCNVWDALKADRAGVLAGHDNRV--SCLGVTDDGMAVATGSWDSFLKIW 1289
+G +D +W+ + L GH + V + T++ +A A D +K+W
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>ref|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 105 bits (262), Expect = 8e-23
Identities = 73/248 (29%), Positives = 114/248 (45%), Gaps = 7/248 (2%)
Frame = +3
Query: 570 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 749
V + ++P G + D +Y +T+ G R+ +L GHTG + CRF D ++
Sbjct: 24 VNSSTFSPDGQRLLTASEDGC--VYGWETQSG--RLLWKLGGHTGPVKFCRFSPDGRLFA 79
Query: 750 S-SGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 926
S S D T LWD+ V ++S +PD++ SG D LW+V+ G
Sbjct: 80 STSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQV 139
Query: 927 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA------DQELMTYSHDNIICG 1088
+ GH I + F P+ + ATGS D+T R++DLR QEL + NI C
Sbjct: 140 LRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGH-RGNISC- 197
Query: 1089 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 1268
+ FS G LL +G D ++W L GH V + + DG+ +A+ +
Sbjct: 198 ---LCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGY 253
Query: 1269 DSFLKIWN 1292
+K+W+
Sbjct: 254 SHTVKVWD 261
Score = 80.5 bits (197), Expect = 3e-15
Identities = 52/226 (23%), Positives = 99/226 (43%), Gaps = 1/226 (0%)
Frame = +3
Query: 354 ATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT 533
+T S T + V +++ + L+GH + + + DS+ L S D ++++W+ +
Sbjct: 80 STSSDCTIRLWDVAKVECL--QVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSG 137
Query: 534 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS 713
+ + + + +APS + +A G D+ +++L+ G + +EL GH G +S
Sbjct: 138 QVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAI-FHQELEGHRGNIS 196
Query: 714 CCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDAS 893
C F + + S D T +W V S++ +PD S +
Sbjct: 197 CLCFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHT 256
Query: 894 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG-SDDATCRL 1028
K+WD G C T G ++ F P+G +G +D A C++
Sbjct: 257 VKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQARCQV 302
Score = 68.6 bits (166), Expect = 1e-11
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 1/171 (0%)
Frame = +3
Query: 828 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 1007
+V S + +PD + ++ + D W+ + G GH + F P+G FA+ S
Sbjct: 23 EVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTS 82
Query: 1008 DDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 1184
D T RL+D+ + L H + +VSFS + L +G D +W+
Sbjct: 83 SDCTIRLWDVAKVECLQVLKGHQR---SVETVSFSPDSKQLASGGWDKRVMLWEVQSGQV 139
Query: 1185 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTGRPF 1337
L GH + + +ATGSWDS +++W+ R GTG F
Sbjct: 140 LRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLR------GGTGAIF 184
Score = 66.2 bits (160), Expect = 5e-11
Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 4/250 (1%)
Frame = +3
Query: 423 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 602
L GH + + D RL S S D + +WD + + V T +++P
Sbjct: 59 LGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSK 118
Query: 603 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW 779
+A GG D ++ +++ + V R L GH + F + + T S D+T +W
Sbjct: 119 QLASGGWDKRVMLWEVQSGQ----VLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMW 174
Query: 780 DIEXXXXXXXXXXXXXDVMSLSLAPDTR--LFVSGACDASAKLWDVREGMCRQTFTGHES 953
D+ ++S + L SG+ D + +W GH +
Sbjct: 175 DLRGGTGAIFHQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVT 234
Query: 954 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 1133
+ +I F P+G A+ T +++D + T + ++ S +F+ G+LL++
Sbjct: 235 WVKSIAFSPDGLQLASAGYSHTVKVWDCNTGR--CTDTLKGVLDVAHSCAFTPDGKLLVS 292
Query: 1134 G-YDDFNCNV 1160
G D C V
Sbjct: 293 GTADQARCQV 302
Score = 55.5 bits (132), Expect = 1e-07
Identities = 31/122 (25%), Positives = 52/122 (42%)
Frame = +3
Query: 945 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 1124
H ++N+ F P+G T S+D ++ ++ + L + FS GRL
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHT--GPVKFCRFSPDGRL 77
Query: 1125 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQ 1304
+ D +WD K + VL GH V + + D +A+G WD + +W +
Sbjct: 78 FASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSG 137
Query: 1305 QV 1310
QV
Sbjct: 138 QV 139
>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 105 bits (262), Expect = 8e-23
Identities = 73/248 (29%), Positives = 114/248 (45%), Gaps = 7/248 (2%)
Frame = +3
Query: 570 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 749
V + ++P G + D +Y +T+ G R+ +L GHTG + CRF D ++
Sbjct: 24 VNSSTFSPDGQRLLTASEDGC--VYGWETQSG--RLLWKLGGHTGPVKFCRFSPDGRLFA 79
Query: 750 S-SGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 926
S S D T LWD+ V ++S +PD++ SG D LW+V+ G
Sbjct: 80 STSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQV 139
Query: 927 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA------DQELMTYSHDNIICG 1088
+ GH I + F P+ + ATGS D+T R++DLR QEL + NI C
Sbjct: 140 LRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGH-RGNISC- 197
Query: 1089 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 1268
+ FS G LL +G D ++W L GH V + + DG+ +A+ +
Sbjct: 198 ---LCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGY 253
Query: 1269 DSFLKIWN 1292
+K+W+
Sbjct: 254 SHTVKVWD 261
Score = 80.5 bits (197), Expect = 3e-15
Identities = 52/226 (23%), Positives = 99/226 (43%), Gaps = 1/226 (0%)
Frame = +3
Query: 354 ATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT 533
+T S T + V +++ + L+GH + + + DS+ L S D ++++W+ +
Sbjct: 80 STSSDCTIRLWDVAKVECL--QVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSG 137
Query: 534 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS 713
+ + + + +APS + +A G D+ +++L+ G + +EL GH G +S
Sbjct: 138 QVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAI-FHQELEGHRGNIS 196
Query: 714 CCRFLDDNQIVTSSGDTTCALWDIEXXXXXXXXXXXXXDVMSLSLAPDTRLFVSGACDAS 893
C F + + S D T +W V S++ +PD S +
Sbjct: 197 CLCFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHT 256
Query: 894 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG-SDDATCRL 1028
K+WD G C T G ++ F P+G +G +D A C++
Sbjct: 257 VKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQARCQV 302
Score = 68.6 bits (166), Expect = 1e-11
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 1/171 (0%)
Frame = +3
Query: 828 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 1007
+V S + +PD + ++ + D W+ + G GH + F P+G FA+ S
Sbjct: 23 EVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTS 82
Query: 1008 DDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 1184
D T RL+D+ + L H + +VSFS + L +G D +W+
Sbjct: 83 SDCTIRLWDVAKVECLQVLKGHQR---SVETVSFSPDSKQLASGGWDKRVMLWEVQSGQV 139
Query: 1185 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQQVDAAGTGRPF 1337
L GH + + +ATGSWDS +++W+ R GTG F
Sbjct: 140 LRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLR------GGTGAIF 184
Score = 66.2 bits (160), Expect = 5e-11
Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 4/250 (1%)
Frame = +3
Query: 423 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 602
L GH + + D RL S S D + +WD + + V T +++P
Sbjct: 59 LGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSK 118
Query: 603 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW 779
+A GG D ++ +++ + V R L GH + F + + T S D+T +W
Sbjct: 119 QLASGGWDKRVMLWEVQSGQ----VLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMW 174
Query: 780 DIEXXXXXXXXXXXXXDVMSLSLAPDTR--LFVSGACDASAKLWDVREGMCRQTFTGHES 953
D+ ++S + L SG+ D + +W GH +
Sbjct: 175 DLRGGTGAIFHQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVT 234
Query: 954 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 1133
+ +I F P+G A+ T +++D + T + ++ S +F+ G+LL++
Sbjct: 235 WVKSIAFSPDGLQLASAGYSHTVKVWDCNTGR--CTDTLKGVLDVAHSCAFTPDGKLLVS 292
Query: 1134 G-YDDFNCNV 1160
G D C V
Sbjct: 293 GTADQARCQV 302
Score = 55.5 bits (132), Expect = 1e-07
Identities = 31/122 (25%), Positives = 52/122 (42%)
Frame = +3
Query: 945 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 1124
H ++N+ F P+G T S+D ++ ++ + L + FS GRL
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHT--GPVKFCRFSPDGRL 77
Query: 1125 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*RQQ 1304
+ D +WD K + VL GH V + + D +A+G WD + +W +
Sbjct: 78 FASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSG 137
Query: 1305 QV 1310
QV
Sbjct: 138 QV 139
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,634,679
Number of extensions: 1126991
Number of successful extensions: 5868
Number of sequences better than 1.0e-05: 95
Number of HSP's gapped: 5133
Number of HSP's successfully gapped: 230
Length of query: 587
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 483
Effective length of database: 8,754,644
Effective search space: 4228493052
Effective search space used: 4228493052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000504
(1763 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 129 6e-27
Sscrofa_Chr03 82 1e-12
>Sscrofa_Chr05
|| Length = 111506441
Score = 129 bits (65), Expect = 6e-27
Identities = 140/165 (84%)
Strand = Plus / Minus
Query: 1002 ggctcggacgacgccacctgcaggctgttcgacctccgcgcggatcaggagctcatgacc 1061
||||||||||||||| ||||| | ||||| ||||| || || || |||||||| | |||
Sbjct: 66301353 ggctcggacgacgcctcctgccgcctgtttgacctgcgggcagaccaggagctgaccacc 66301294
Query: 1062 tactcccacgacaacatcatctgcgggatcacctccgtctccttctccaagagcgggcgc 1121
||||||||||| | |||||||||||| ||||| || || |||||||| ||||| |||
Sbjct: 66301293 tactcccacgagagcatcatctgcggcatcacatctgtggccttctccctcagcggccgc 66301234
Query: 1122 ctcctcctcgctgggtacgacgacttcaactgcaacgtctgggac 1166
|| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 66301233 ctgctcttcgctggctacgacgacttcaactgcaacgtctgggac 66301189
Score = 91.7 bits (46), Expect = 1e-15
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 894 gccaaactctgggacgtgcgagaaggaatgtgccggcagaccttcaccggccacgagtcc 953
||||| |||||||| |||||||| || | ||||||||||||||||| ||||||||||||
Sbjct: 66302811 gccaagctctgggatgtgcgagaggggacctgccggcagaccttcacgggccacgagtcc 66302752
Query: 954 gacatcaacgccatctgc 971
|||||||| |||||||||
Sbjct: 66302751 gacatcaatgccatctgc 66302734
Score = 79.8 bits (40), Expect = 5e-12
Identities = 76/88 (86%)
Strand = Plus / Minus
Query: 1206 gacaaccgcgtcagctgcctgggggtgacggacgatgggatggccgtggcgacgggatcc 1265
|||||| | ||||||||||||||||| || | ||||||||||| ||||| || || |||
Sbjct: 66299754 gacaacagggtcagctgcctgggggtcacagctgatgggatggctgtggccactggttcc 66299695
Query: 1266 tgggacagcttccttaagatctggaact 1293
|||||||||||||| || ||||||||||
Sbjct: 66299694 tgggacagcttcctcaaaatctggaact 66299667
Score = 73.8 bits (37), Expect = 3e-10
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 390 gtgggaagaatccagatgcgcaccaggagaacgctgcgggggcacctggccaagatctat 449
|||||| || |||||||||| ||| || | || ||||||| ||||||||||||||||||
Sbjct: 66303675 gtgggacgagtccagatgcggacccggcggaccttgcggggacacctggccaagatctat 66303616
Query: 450 gccatgcactggg 462
|||||||||||||
Sbjct: 66303615 gccatgcactggg 66303603
Score = 67.9 bits (34), Expect = 2e-08
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 472 ccaggcttctcgtcagtgcctcacaggacgggaagctgatcatctgggacagctacacca 531
||||||| || || |||||||| || ||||||||||||||| | ||||||| |||||||
Sbjct: 66303514 ccaggctgctggtaagtgcctcgcaagacgggaagctgatcgtgtgggacacatacacca 66303455
Query: 532 ccaacaaggt 541
||||||||||
Sbjct: 66303454 ccaacaaggt 66303445
Score = 63.9 bits (32), Expect = 3e-07
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 546 gccatccctctgcgctcctcgtgggtcatgacgtgcgcgtatgcgccttctgggaactac 605
|||||||| ||||||||||| ||||||||||| || || || || || || ||||||| |
Sbjct: 66303325 gccatccccctgcgctcctcctgggtcatgacctgtgcctacgccccgtcagggaacttc 66303266
Query: 606 gtggcctgcggtggcctggataacatctgctccatttaca 645
||||| || || || ||||| ||||| |||||||| ||||
Sbjct: 66303265 gtggcatgtggggggctggacaacatgtgctccatctaca 66303226
>Sscrofa_Chr03
|| Length = 144787322
Score = 81.8 bits (41), Expect = 1e-12
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 473 caggcttctcgtcagtgcctcacaggacgggaagctgatcatctgggacagctacaccac 532
|||||| || ||||| ||||| ||||| |||||||| ||||| |||||||||||||||||
Sbjct: 7977543 caggctgctggtcagcgcctcccaggatgggaagctcatcatttgggacagctacaccac 7977602
Query: 533 caacaaggt 541
|||||||||
Sbjct: 7977603 caacaaggt 7977611
Score = 81.8 bits (41), Expect = 1e-12
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 473 caggcttctcgtcagtgcctcacaggacgggaagctgatcatctgggacagctacaccac 532
|||||| || ||||| ||||| ||||| |||||||| ||||| |||||||||||||||||
Sbjct: 8065948 caggctgctggtcagcgcctcccaggatgggaagctcatcatttgggacagctacaccac 8066007
Query: 533 caacaaggt 541
|||||||||
Sbjct: 8066008 caacaaggt 8066016
Score = 79.8 bits (40), Expect = 5e-12
Identities = 91/108 (84%)
Strand = Plus / Plus
Query: 538 aggtccacgccatccctctgcgctcctcgtgggtcatgacgtgcgcgtatgcgccttctg 597
|||||||||| ||||| ||||||||||| ||||||||||| || || || ||||| || |
Sbjct: 7977691 aggtccacgctatcccactgcgctcctcttgggtcatgacctgtgcctacgcgccctcag 7977750
Query: 598 ggaactacgtggcctgcggtggcctggataacatctgctccatttaca 645
|||||| |||||||| || || |||| |||||||||||||| ||||
Sbjct: 7977751 ggaactttgtggcctgtgggggattggacaacatctgctccatctaca 7977798
Score = 79.8 bits (40), Expect = 5e-12
Identities = 91/108 (84%)
Strand = Plus / Plus
Query: 538 aggtccacgccatccctctgcgctcctcgtgggtcatgacgtgcgcgtatgcgccttctg 597
|||||||||| ||||| ||||||||||| ||||||||||| || || || ||||| || |
Sbjct: 8066096 aggtccacgctatcccactgcgctcctcttgggtcatgacctgtgcctacgcgccctcag 8066155
Query: 598 ggaactacgtggcctgcggtggcctggataacatctgctccatttaca 645
|||||| |||||||| || || |||| |||||||||||||| ||||
Sbjct: 8066156 ggaactttgtggcctgtgggggattggacaacatctgctccatctaca 8066203
Score = 71.9 bits (36), Expect = 1e-09
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 384 gacccagtgggaagaatccagatgcgcaccaggagaacgctgcgggggcacctggccaag 443
||||||||||| |||||||||||| | || |||| || || || ||||||||||| ||
Sbjct: 7977144 gacccagtggggagaatccagatgaggacacggaggactctccgtgggcacctggcaaaa 7977203
Query: 444 atctatgccatgcactgggg 463
||||||||||||||||||||
Sbjct: 7977204 atctatgccatgcactgggg 7977223
Score = 71.9 bits (36), Expect = 1e-09
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 384 gacccagtgggaagaatccagatgcgcaccaggagaacgctgcgggggcacctggccaag 443
||||||||||| |||||||||||| | || |||| || || || ||||||||||| ||
Sbjct: 8065548 gacccagtggggagaatccagatgaggacacggaggactctccgtgggcacctggcaaaa 8065607
Query: 444 atctatgccatgcactgggg 463
||||||||||||||||||||
Sbjct: 8065608 atctatgccatgcactgggg 8065627
Score = 69.9 bits (35), Expect = 5e-09
Identities = 92/111 (82%)
Strand = Plus / Plus
Query: 1186 caggtgtcttggctgggcatgacaaccgcgtcagctgcctgggggtgacggacgatggga 1245
|||||||| | || || ||||||||||| || |||||||| || || || || ||||| |
Sbjct: 7978921 caggtgtcctcgcaggccatgacaaccgtgtgagctgccttggtgtcactgatgatggca 7978980
Query: 1246 tggccgtggcgacgggatcctgggacagcttccttaagatctggaactaac 1296
|||| ||||| || || ||||||||| |||||| ||||||||||||||||
Sbjct: 7978981 tggctgtggccacaggctcctgggactccttcctcaagatctggaactaac 7979031
Score = 69.9 bits (35), Expect = 5e-09
Identities = 92/111 (82%)
Strand = Plus / Plus
Query: 1186 caggtgtcttggctgggcatgacaaccgcgtcagctgcctgggggtgacggacgatggga 1245
|||||||| | || || ||||||||||| || |||||||| || || || || ||||| |
Sbjct: 8067326 caggtgtcctcgcaggccatgacaaccgtgtgagctgccttggtgtcactgatgatggca 8067385
Query: 1246 tggccgtggcgacgggatcctgggacagcttccttaagatctggaactaac 1296
|||| ||||| || || ||||||||| |||||| ||||||||||||||||
Sbjct: 8067386 tggctgtggccacaggctcctgggactccttcctcaagatctggaactaac 8067436
Score = 67.9 bits (34), Expect = 2e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 700 caggttacctgtcctgttgccgtttcctggatgacaatcagatcgtcaccagctctggag 759
|||| |||||||| || ||||| |||||||||||||| || ||| |||||||||| || |
Sbjct: 7977947 caggctacctgtcatgctgccgcttcctggatgacaaccaaatcatcaccagctcggggg 7978006
Query: 760 acaccacctg 769
||||||||||
Sbjct: 7978007 acaccacctg 7978016
Score = 67.9 bits (34), Expect = 2e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 700 caggttacctgtcctgttgccgtttcctggatgacaatcagatcgtcaccagctctggag 759
|||| |||||||| || ||||| |||||||||||||| || ||| |||||||||| || |
Sbjct: 8066352 caggctacctgtcatgctgccgcttcctggatgacaaccaaatcatcaccagctcggggg 8066411
Query: 760 acaccacctg 769
||||||||||
Sbjct: 8066412 acaccacctg 8066421
Score = 61.9 bits (31), Expect = 1e-06
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 903 tgggacgtgcgagaaggaatgtgccggcagaccttcaccggccacgagtccgacatcaa 961
|||||||||||||| |||||||| |||||||||| ||||||||| |||||||||||
Sbjct: 7978448 tgggacgtgcgagattcgatgtgccgacagaccttcatcggccacgaatccgacatcaa 7978506
Score = 61.9 bits (31), Expect = 1e-06
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 903 tgggacgtgcgagaaggaatgtgccggcagaccttcaccggccacgagtccgacatcaa 961
|||||||||||||| |||||||| |||||||||| ||||||||| |||||||||||
Sbjct: 8066853 tgggacgtgcgagattcgatgtgccgacagaccttcatcggccacgaatccgacatcaa 8066911
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,677,771
Number of extensions: 254
Number of successful extensions: 254
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 18
Length of query: 1763
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1741
Effective length of database: 2,808,408,574
Effective search space: 4889439327334
Effective search space used: 4889439327334
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)