Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000522
(1638 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209217.1| cytochrome b [Bos taurus]. 565 e-161
>ref|YP_209217.1| cytochrome b [Bos taurus].
Length = 379
Score = 565 bits (1455), Expect = e-161
Identities = 287/376 (76%), Positives = 309/376 (82%)
Frame = +1
Query: 22 MTNIRKSHPLIKIINNAFIDLPAPSNISS**NFGSLLGICLILQILTGLFLAIHYTSDTT 201
MTNIRKSHPL+KI+NNAFIDLPAPSNISS NFGSLLGICLILQILTGLFLA+HYTSDTT
Sbjct: 1 MTNIRKSHPLMKIVNNAFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTT 60
Query: 202 TAFSSVTHICRDVNYG*VIRYLHANGASIFFICLFIHVGRGLYYGSYIFLET*NIGVVLL 381
TAFSSVTHICRDVNYG +IRY+HANGAS+FFICL++HVGRGLYYGSY FLET NIGV+LL
Sbjct: 61 TAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLETWNIGVILL 120
Query: 382 FTVIATAFIGYVLP*GQISF*GATVITNLLSAIPYIGTDLVE*I*GGFSVDKATLTRFFA 561
TV+ATAF+GYVLP GQ+SF GATVITNLLSAIPYIGT+LVE I GGFSVDKATLTRFFA
Sbjct: 121 LTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFA 180
Query: 562 FHFILPFIITALAAVHLLFLHETGSNNPTGISSDIDKIPFHPYYTIKDXXXXXXXXXXXX 741
FHFILPFII A+A VHLLFLHETGSNNPTGISSD+DKIPFHPYYTIKD
Sbjct: 181 FHFILPFIIMAIAMVHLLFLHETGSNNPTGISSDVDKIPFHPYYTIKDILGALLLILALM 240
Query: 742 XXXXXXXXXXGDPDNYTPANPLNTPPHIKPE*YFLFAYAILRSIPNKLGGXXXXXXXXXX 921
GDPDNYTPANPLNTPPHIKPE YFLFAYAILRSIPNKLGG
Sbjct: 241 LLVLFAPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILI 300
Query: 922 XXXMPILHTSKQRGIIFRPLSQCLF*ILVADLITLT*IGGQPVEHPFIIIGQLASILYFX 1101
+P+LHTSKQR ++FRPLSQCLF LVADL+TLT IGGQPVEHP+I IGQLAS+LYF
Sbjct: 301 LALIPLLHTSKQRSMMFRPLSQCLFWALVADLLTLTWIGGQPVEHPYITIGQLASVLYFL 360
Query: 1102 XXXXXXXXXXXXENNL 1149
EN L
Sbjct: 361 LILVLMPTAGTIENKL 376
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,252,279
Number of extensions: 1055599
Number of successful extensions: 2793
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2780
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 439
Effective length of database: 14,140,958
Effective search space: 6207880562
Effective search space used: 6207880562
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000522
(1638 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008483.1| cytochrome b [Canis lupus familiaris]. 563 e-160
>ref|NP_008483.1| cytochrome b [Canis lupus familiaris].
Length = 379
Score = 563 bits (1452), Expect = e-160
Identities = 284/376 (75%), Positives = 309/376 (82%)
Frame = +1
Query: 22 MTNIRKSHPLIKIINNAFIDLPAPSNISS**NFGSLLGICLILQILTGLFLAIHYTSDTT 201
MTNIRK+HPL KI+NN+FIDLPAPSNIS+ NFGSLLG+CLILQILTGLFLA+HYTSDT
Sbjct: 1 MTNIRKTHPLAKIVNNSFIDLPAPSNISAWWNFGSLLGVCLILQILTGLFLAMHYTSDTA 60
Query: 202 TAFSSVTHICRDVNYG*VIRYLHANGASIFFICLFIHVGRGLYYGSYIFLET*NIGVVLL 381
TAFSSVTHICRDVNYG +IRY+HANGAS+FFICLF+HVGRGLYYGSY+F+ET NIG+VLL
Sbjct: 61 TAFSSVTHICRDVNYGWIIRYMHANGASMFFICLFLHVGRGLYYGSYVFMETWNIGIVLL 120
Query: 382 FTVIATAFIGYVLP*GQISF*GATVITNLLSAIPYIGTDLVE*I*GGFSVDKATLTRFFA 561
F +ATAF+GYVLP GQ+SF GATVITNLLSAIPYIGTDLVE I GGFSVDKATLTRFFA
Sbjct: 121 FATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFA 180
Query: 562 FHFILPFIITALAAVHLLFLHETGSNNPTGISSDIDKIPFHPYYTIKDXXXXXXXXXXXX 741
FHFILPFII ALA VHLLFLHETGSNNP+GI+SD DKIPFHPYYTIKD
Sbjct: 181 FHFILPFIIAALAMVHLLFLHETGSNNPSGITSDSDKIPFHPYYTIKDILGALLLLLILM 240
Query: 742 XXXXXXXXXXGDPDNYTPANPLNTPPHIKPE*YFLFAYAILRSIPNKLGGXXXXXXXXXX 921
GDPDNYTPANPLNTPPHIKPE YFLFAYAILRSIPNKLGG
Sbjct: 241 SLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSILI 300
Query: 922 XXXMPILHTSKQRGIIFRPLSQCLF*ILVADLITLT*IGGQPVEHPFIIIGQLASILYFX 1101
+P+LHTSKQR ++FRPLSQCLF +LVADL+TLT IGGQPVEHPFIIIGQ+ASILYF
Sbjct: 301 LAFIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQVASILYFT 360
Query: 1102 XXXXXXXXXXXXENNL 1149
ENNL
Sbjct: 361 ILLILMPTVSVIENNL 376
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,164,840
Number of extensions: 1021794
Number of successful extensions: 2880
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2875
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 438
Effective length of database: 15,274,216
Effective search space: 6690106608
Effective search space used: 6690106608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000522
(1638 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024038.1| cytochrome b [Homo sapiens]. 489 e-138
>ref|YP_003024038.1| cytochrome b [Homo sapiens].
Length = 380
Score = 489 bits (1260), Expect = e-138
Identities = 244/359 (67%), Positives = 283/359 (78%)
Frame = +1
Query: 22 MTNIRKSHPLIKIINNAFIDLPAPSNISS**NFGSLLGICLILQILTGLFLAIHYTSDTT 201
MT +RK++PL+K+IN++FIDLP PSNIS+ NFGSLLG CLILQI TGLFLA+HY+ D +
Sbjct: 1 MTPMRKTNPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDAS 60
Query: 202 TAFSSVTHICRDVNYG*VIRYLHANGASIFFICLFIHVGRGLYYGSYIFLET*NIGVVLL 381
TAFSS+ HI RDVNYG +IRYLHANGAS+FFICLF+H+GRGLYYGS+++ ET NIG++LL
Sbjct: 61 TAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYSETWNIGIILL 120
Query: 382 FTVIATAFIGYVLP*GQISF*GATVITNLLSAIPYIGTDLVE*I*GGFSVDKATLTRFFA 561
+ATAF+GYVLP GQ+SF GATVITNLLSAIPYIGTDLV+ I GG+SVD TLTRFF
Sbjct: 121 LATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFT 180
Query: 562 FHFILPFIITALAAVHLLFLHETGSNNPTGISSDIDKIPFHPYYTIKDXXXXXXXXXXXX 741
FHFILPFII ALA +HLLFLHETGSNNP GI+S DKI FHPYYTIKD
Sbjct: 181 FHFILPFIIAALATLHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGLLLFLLSLM 240
Query: 742 XXXXXXXXXXGDPDNYTPANPLNTPPHIKPE*YFLFAYAILRSIPNKLGGXXXXXXXXXX 921
GDPDNYT ANPLNTPPHIKPE YFLFAY ILRS+PNKLGG
Sbjct: 241 TLTLFSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILI 300
Query: 922 XXXMPILHTSKQRGIIFRPLSQCLF*ILVADLITLT*IGGQPVEHPFIIIGQLASILYF 1098
+PILH SKQ+ ++FRPLSQ L+ +L ADL+ LT IGGQPV +PF IIGQ+AS+LYF
Sbjct: 301 LAMIPILHMSKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPFTIIGQVASVLYF 359
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,966,081
Number of extensions: 991939
Number of successful extensions: 2735
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2715
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 438
Effective length of database: 14,737,052
Effective search space: 6454828776
Effective search space used: 6454828776
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000522
(1638 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904340.1| cytochrome b [Mus musculus]. 540 e-153
>ref|NP_904340.1| cytochrome b [Mus musculus].
Length = 381
Score = 540 bits (1391), Expect = e-153
Identities = 272/359 (75%), Positives = 299/359 (83%)
Frame = +1
Query: 22 MTNIRKSHPLIKIINNAFIDLPAPSNISS**NFGSLLGICLILQILTGLFLAIHYTSDTT 201
MTN+RK+HPL KIIN++FIDLPAPSNISS NFGSLLG+CL++QI+TGLFLA+HYTSDT
Sbjct: 1 MTNMRKTHPLFKIINHSFIDLPAPSNISSWWNFGSLLGVCLMVQIITGLFLAMHYTSDTM 60
Query: 202 TAFSSVTHICRDVNYG*VIRYLHANGASIFFICLFIHVGRGLYYGSYIFLET*NIGVVLL 381
TAFSSVTHICRDVNYG +IRY+HANGAS+FFICLF+HVGRGLYYGSY F+ET NIGV+LL
Sbjct: 61 TAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGLYYGSYTFMETWNIGVLLL 120
Query: 382 FTVIATAFIGYVLP*GQISF*GATVITNLLSAIPYIGTDLVE*I*GGFSVDKATLTRFFA 561
F V+ATAF+GYVLP GQ+SF GATVITNLLSAIPYIGT LVE I GGFSVDKATLTRFFA
Sbjct: 121 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFA 180
Query: 562 FHFILPFIITALAAVHLLFLHETGSNNPTGISSDIDKIPFHPYYTIKDXXXXXXXXXXXX 741
FHFILPFII ALA VHLLFLHETGSNNPTG++SD DKIPFHPYYTIKD
Sbjct: 181 FHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILIMFLILM 240
Query: 742 XXXXXXXXXXGDPDNYTPANPLNTPPHIKPE*YFLFAYAILRSIPNKLGGXXXXXXXXXX 921
GDPDNY PANPLNTPPHIKPE YFLFAYAILRSIPNKLGG
Sbjct: 241 TLVLFFPDMLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILI 300
Query: 922 XXXMPILHTSKQRGIIFRPLSQCLF*ILVADLITLT*IGGQPVEHPFIIIGQLASILYF 1098
MP LHTSKQR ++FRP++Q L+ ILVA+L+ LT IGGQPVEHPFIIIGQLASI YF
Sbjct: 301 LALMPFLHTSKQRSLMFRPITQILYWILVANLLILTWIGGQPVEHPFIIIGQLASISYF 359
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,075,901
Number of extensions: 844630
Number of successful extensions: 2226
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2212
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 440
Effective length of database: 12,433,743
Effective search space: 5470846920
Effective search space used: 5470846920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000522
(1638 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008646.1| cytochrome b [Sus scrofa]. 587 e-168
>ref|NP_008646.1| cytochrome b [Sus scrofa].
Length = 379
Score = 587 bits (1512), Expect = e-168
Identities = 304/376 (80%), Positives = 316/376 (84%)
Frame = +1
Query: 22 MTNIRKSHPLIKIINNAFIDLPAPSNISS**NFGSLLGICLILQILTGLFLAIHYTSDTT 201
MTNIRKSHPL+KIINNAFIDLPAPSNISS NFGSLLGICLILQILTGLFLA+HYTSDTT
Sbjct: 1 MTNIRKSHPLMKIINNAFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTT 60
Query: 202 TAFSSVTHICRDVNYG*VIRYLHANGASIFFICLFIHVGRGLYYGSYIFLET*NIGVVLL 381
TAFSSVTHICRDVNYG VIRYLHANGAS+FFICLFIHVGRGLYYGSY+FLET NIGVVLL
Sbjct: 61 TAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSYMFLETWNIGVVLL 120
Query: 382 FTVIATAFIGYVLP*GQISF*GATVITNLLSAIPYIGTDLVE*I*GGFSVDKATLTRFFA 561
FTV+ATAF+GYVLP GQ+SF GATVITNLLSAIPYIGTDLVE I GGFSVDKATLTRFFA
Sbjct: 121 FTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFA 180
Query: 562 FHFILPFIITALAAVHLLFLHETGSNNPTGISSDIDKIPFHPYYTIKDXXXXXXXXXXXX 741
FHFILPFIITALAAVHLLFLHETGSNNPTGISSD+DKIPFHPYYTIKD
Sbjct: 181 FHFILPFIITALAAVHLLFLHETGSNNPTGISSDMDKIPFHPYYTIKDILGALFMMLILL 240
Query: 742 XXXXXXXXXXGDPDNYTPANPLNTPPHIKPE*YFLFAYAILRSIPNKLGGXXXXXXXXXX 921
GDPDNYTPANPLNTPPHIKPE YFLFAYAILRSIPNKLGG
Sbjct: 241 ILVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVASILI 300
Query: 922 XXXMPILHTSKQRGIIFRPLSQCLF*ILVADLITLT*IGGQPVEHPFIIIGQLASILYFX 1101
MP+LHTSKQR ++FRPLSQCLF +LVADLITLT IGGQPVEHPFIIIGQLASILYF
Sbjct: 301 LILMPMLHTSKQRSMMFRPLSQCLFWMLVADLITLTWIGGQPVEHPFIIIGQLASILYFL 360
Query: 1102 XXXXXXXXXXXXENNL 1149
ENNL
Sbjct: 361 IILVLMPITSIIENNL 376
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,863,749
Number of extensions: 791523
Number of successful extensions: 1721
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1714
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 442
Effective length of database: 8,754,644
Effective search space: 3869552648
Effective search space used: 3869552648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000522
(1638 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1275 0.0
Sscrofa_Chr15 1051 0.0
Sscrofa_Chr09 985 0.0
Sscrofa_ChrX 785 0.0
Sscrofa_Chr17 716 0.0
Sscrofa_Chr11 137 2e-29
gb|GL892964.2| Sus scrofa unplaced genomic scaffold ChrUScaf849 86 7e-14
Sscrofa_Chr04 86 7e-14
Sscrofa_Chr03 72 1e-09
gb|JH118695.1| Sus scrofa unplaced genomic scaffold ChrUScaf1824 68 2e-08
>Sscrofa_Chr02
|| Length = 162569375
Score = 1275 bits (643), Expect = 0.0
Identities = 1006/1127 (89%)
Strand = Plus / Plus
Query: 22 atgaccaacatccgaaaatcacacccactaataaaaattatcaacaacgcattcattgac 81
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 120060761 atgaccaacatccgaaaatcacaccgactaataaaaattatcaataacgcattcattgac 120060820
Query: 82 ctcccagccccctcaaacatctcatcatgatgaaacttcggttccctcttaggcatctgc 141
|| |||||||||||||| || |||||||||||||||||||||||||| |||| ||||||
Sbjct: 120060821 cttccagccccctcaaatatttcatcatgatgaaacttcggttcccttctaggtatctgc 120060880
Query: 142 ctaatcttgcaaatcctaacaggcctgttcttagcaatacattacacatcagacacaaca 201
||||| || ||||||||||||||||| ||| |||||||||| || |||||||| ||||||
Sbjct: 120060881 ctaattttacaaatcctaacaggcctattcctagcaatacactatacatcagatacaaca 120060940
Query: 202 acagctttctcatcagttacacacatttgtcgagacgtaaattacggatgagttattcgc 261
||||| ||||||||||| ||||| || ||||||||||||||||| |||||| ||||||||
Sbjct: 120060941 acagccttctcatcagtaacacatatctgtcgagacgtaaattatggatgaattattcgc 120061000
Query: 262 tatctacatgcaaacggagcatccatattctttatttgcctattcatccacgtaggccga 321
|| ||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 120061001 tacctacatgcaaatggagcatcaatattcttcatttgcctattcatccatgtaggccga 120061060
Query: 322 ggtctatactacggatcctatatattcctagaaacatgaaacattggagtagtcctacta 381
|| |||||||||||||||||| ||| ||||||||||||||||| ||||| | ||| ||
Sbjct: 120061061 ggcctatactacggatcctatgcatttctagaaacatgaaacatcagagtaattctatta 120061120
Query: 382 tttaccgttatagcaacagccttcataggctacgtcctgccctgaggacaaatatcattc 441
||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 120061121 tttactgttatagcaacagccttcatgggctacgtcctaccttgaggacaaatatcattc 120061180
Query: 442 tgaggagctacggtcatcacaaatctactatcagctatcccttatatcggaacagacctc 501
||||||||||| ||||||||||| |||||||||||||| || ||||| |||||| ||||
Sbjct: 120061181 tgaggagctactgtcatcacaaacctactatcagctattccctatattggaacaaacctt 120061240
Query: 502 gtagaatgaatctgagggggcttttccgtcgacaaagcaaccctcacacgattcttcgcc 561
||||||||||||||||| || || |||||||||||||||||||| |||||||||||||||
Sbjct: 120061241 gtagaatgaatctgaggaggtttctccgtcgacaaagcaacccttacacgattcttcgcc 120061300
Query: 562 ttccactttatcctgccattcatcattaccgccctcgcagccgtacatctcctattcctg 621
|||||||| || ||||| |||||||| | ||||||||||| |||||||| |||||||
Sbjct: 120061301 ttccacttcattctgcccttcatcatcgctgccctcgcagctgtacatcttttattccta 120061360
Query: 622 cacgaaaccggatccaacaaccctaccggaatctcatcagacatagacaaaattccattt 681
|||||||| ||||||| || ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 120061361 cacgaaactggatccagtaatcctactggaatttcatcagacatagacaaaattccattc 120061420
Query: 682 cacccatactacactattaaagacattctaggagccttatttataatactaatcctacta 741
|| ||||||||||| || ||||| |||||||||||| ||||||| |||||| |||||||
Sbjct: 120061421 catccatactacaccatcaaagatattctaggagccctatttatgatactagccctacta 120061480
Query: 742 atccttgtactattctcaccagacctactaggagacccagacaactacaccccagcaaac 801
| ||| |||||||||| | ||||| |||||||||| ||||||||||| ||||||||||||
Sbjct: 120061481 accctagtactattcttagcagacttactaggagatccagacaactataccccagcaaac 120061540
Query: 802 ccactaaacaccccaccccatattaaaccagaatgatatttcttattcgcctacgctatt 861
||||||||||| |||||||| ||||||||||||||| | ||| |||| ||||| || ||
Sbjct: 120061541 ccactaaacacaccaccccacattaaaccagaatgacacttcctatttgcctatgccatc 120061600
Query: 862 ctacgttcaattcctaataaactaggtggagtgttggccctagtagcctccatcctaatc 921
||||| ||||| || || ||| |||| ||||| || |||||||||||||||||| |||||
Sbjct: 120061601 ctacgctcaatccccaacaaattaggcggagtattagccctagtagcctccatcttaatc 120061660
Query: 922 ctaattttaatgcccatactacacacatccaaacaacgaggcataatatttcgaccacta 981
|||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 120061661 ctaattctaatacccatgctacacacatccaaacaacgaagcataatatttcgaccacta 120061720
Query: 982 agtcaatgcctattctgaatactagtagcagacctcattacactaacatgaattggagga 1041
|||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 120061721 agtcaatgcctattttgagtactagtagcagacctcatcacactaacatgaattggagga 120061780
Query: 1042 caacccgtagaacacccgttcatcatcatcggccaactagcctccatcttatacttccta 1101
||||| ||||||||||| ||||| || || || ||||||||||| ||| | |||||||||
Sbjct: 120061781 caacctgtagaacacccattcattattattggacaactagcctctatcgtgtacttccta 120061840
Query: 1102 atcattctagtattgataccaatcactagcatcatcgaaaacaacct 1148
|| ||||| ||| | |||||| |||||||||||||||||||||||||
Sbjct: 120061841 attattctggtactaataccagtcactagcatcatcgaaaacaacct 120061887
Score = 200 bits (101), Expect = 2e-48
Identities = 131/141 (92%)
Strand = Plus / Minus
Query: 22 atgaccaacatccgaaaatcacacccactaataaaaattatcaacaacgcattcattgac 81
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 96264346 atgaccaacatccgaaaatcacacccactaataaaaattatcaataacgcattcattgac 96264287
Query: 82 ctcccagccccctcaaacatctcatcatgatgaaacttcggttccctcttaggcatctgc 141
|| |||||||||||||| || |||||||||||||||||||||||||| ||| ||||||
Sbjct: 96264286 cttccagccccctcaaatatttcatcatgatgaaacttcggttcccttctagatatctgc 96264227
Query: 142 ctaatcttgcaaatcctaaca 162
||||| || ||||||||||||
Sbjct: 96264226 ctaattttacaaatcctaaca 96264206
Score = 172 bits (87), Expect = 4e-40
Identities = 147/167 (88%)
Strand = Plus / Minus
Query: 947 catccaaacaacgaggcataatatttcgaccactaagtcaatgcctattctgaatactag 1006
|||||||||||||| |||||||||||||||||||||| || || ||||| ||| ||||||
Sbjct: 21109243 catccaaacaacgaagcataatatttcgaccactaagccagtgtctattttgagtactag 21109184
Query: 1007 tagcagacctcattacactaacatgaattggaggacaacccgtagaacacccgttcatca 1066
| ||||||||||||||||| |||||||| ||||||| ||||||||||| || ||||| |
Sbjct: 21109183 tggcagacctcattacactgacatgaatcagaggacagcccgtagaacaaccattcatta 21109124
Query: 1067 tcatcggccaactagcctccatcttatacttcctaatcattctagta 1113
| ||||| |||||||| | |||| |||||||||||||||| ||||||
Sbjct: 21109123 ttatcggacaactagcattcatcctatacttcctaatcatcctagta 21109077
>Sscrofa_Chr15
|| Length = 157681621
Score = 1051 bits (530), Expect = 0.0
Identities = 692/746 (92%)
Strand = Plus / Plus
Query: 403 ttcataggctacgtcctgccctgaggacaaatatcattctgaggagctacggtcatcaca 462
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 140261129 ttcataggttacgtcctaccctgaggacaaatatcattctgaggagctacagtcatcaca 140261188
Query: 463 aatctactatcagctatcccttatatcggaacagacctcgtagaatgaatctgagggggc 522
|| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 140261189 aacctactatcagctatcccttatattggaacaaacctcgtagaatgaatctgagggggc 140261248
Query: 523 ttttccgtcgacaaagcaaccctcacacgattcttcgccttccactttatcctgccattc 582
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 140261249 ttctccgtcgacaaagcaaccctcacacgattcttcgccttccactttattctgcccttc 140261308
Query: 583 atcattaccgccctcgcagccgtacatctcctattcctgcacgaaaccggatccaacaac 642
||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 140261309 atcatcgctgccctcgcaaccgtacatctcctattcctgcacgaaaccggatccaacaac 140261368
Query: 643 cctaccggaatctcatcagacatagacaaaattccatttcacccatactacactattaaa 702
|| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 140261369 cccactggaatttcatcagacatagacaaaattccatttcacccatactatactattaaa 140261428
Query: 703 gacattctaggagccttatttataatactaatcctactaatccttgtactattctcacca 762
||||||||||||||| || | | ||||||| |||||||||| || |||||||||||||||
Sbjct: 140261429 gacattctaggagccctagtcacaatactagtcctactaattctagtactattctcacca 140261488
Query: 763 gacctactaggagacccagacaactacaccccagcaaacccactaaacaccccaccccat 822
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140261489 gacctattaggagacccagacaactacaccccagcaaacccactaaacaccccaccccac 140261548
Query: 823 attaaaccagaatgatatttcttattcgcctacgctattctacgttcaattcctaataaa 882
||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 140261549 attaaaccagaatgatacttcttatttgcctacgctatcctacgctcaattcctaataaa 140261608
Query: 883 ctaggtggagtgttggccctagtagcctccatcctaatcctaattttaatgcccatacta 942
||||| |||||||| || ||||||||||| ||| |||||||||||||||| |||||||||
Sbjct: 140261609 ctaggcggagtgttagctctagtagcctctatcttaatcctaattttaatacccatacta 140261668
Query: 943 cacacatccaaacaacgaggcataatatttcgaccactaagtcaatgcctattctgaata 1002
|||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||
Sbjct: 140261669 cacacatccaaacaacgaagcataatatttcgaccactaagccaatgcctattttgagta 140261728
Query: 1003 ctagtagcagacctcattacactaacatgaattggaggacaacccgtagaacacccgttc 1062
|||||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 140261729 ctagtagcagaccttatcgcactaacatgaatcggaggacaacccgtagaacacccattc 140261788
Query: 1063 atcatcatcggccaactagcctccatcttatacttcctaatcattctagtattgatacca 1122
||| |||| || ||| ||||||| ||| ||||||||||||| ||||||||| | ||||||
Sbjct: 140261789 atcgtcattggtcaattagcctctatcctatacttcctaattattctagtactaatacca 140261848
Query: 1123 atcactagcatcatcgaaaacaacct 1148
||||||||||||||||||||||||||
Sbjct: 140261849 atcactagcatcatcgaaaacaacct 140261874
Score = 222 bits (112), Expect = 5e-55
Identities = 208/240 (86%)
Strand = Plus / Minus
Query: 85 ccagccccctcaaacatctcatcatgatgaaacttcggttccctcttaggcatctgccta 144
|||||||| |||||||||||| |||||||||| ||||| || ||| | || ||||| |||
Sbjct: 41978154 ccagccccatcaaacatctcaccatgatgaaatttcggctctctcctgggtatctgtcta 41978095
Query: 145 atcttgcaaatcctaacaggcctgttcttagcaatacattacacatcagacacaacaaca 204
|| || ||||||||||||||||| ||| |||||||||| ||||||||||| |||||||||
Sbjct: 41978094 attttacaaatcctaacaggcctattcctagcaatacactacacatcagatacaacaaca 41978035
Query: 205 gctttctcatcagttacacacatttgtcgagacgtaaattacggatgagttattcgctat 264
|| ||||||||||| ||||| || || ||||| |||||||| |||||| |||| ||||||
Sbjct: 41978034 gccttctcatcagtaacacatatctgccgagatgtaaattatggatgaattatccgctat 41977975
Query: 265 ctacatgcaaacggagcatccatattctttatttgcctattcatccacgtaggccgaggt 324
|||||||||||||||||||| |||||||| || ||| | || ||||| || |||||||||
Sbjct: 41977974 ctacatgcaaacggagcatcaatattcttcatctgcttgtttatccatgtgggccgaggt 41977915
>Sscrofa_Chr09
|| Length = 153670197
Score = 985 bits (497), Expect = 0.0
Identities = 751/833 (90%), Gaps = 2/833 (0%)
Strand = Plus / Plus
Query: 22 atgaccaacatccgaaaatcacacccactaataaaaattatcaacaacgcattcattgac 81
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 83998206 atgaccaacatccgaaaatcacacccactaataaaaatcatcaataacgcattcattgac 83998265
Query: 82 ctcccagccccctcaaacatctcatcatgatgaaacttcggttccctcttaggcatctgc 141
|| |||||||||||||| || ||||||||||||||||||||||||||| |||| ||||||
Sbjct: 83998266 cttccagccccctcaaatatttcatcatgatgaaacttcggttccctcctaggtatctgc 83998325
Query: 142 ctaatcttgcaaatcctaacaggcctgttcttagcaatacattacacatcagacacaaca 201
||||| || ||||||||||||||||| ||| |||||||||| || |||||||| |||| |
Sbjct: 83998326 ctaattttacaaatcctaacaggcctattcctagcaatacactatacatcagatacaata 83998385
Query: 202 acagctttctcatcagttacacacatttgtcgagacgtaaattacggatgagttattcgc 261
||||| ||||||||||| ||||| || ||| ||||||||||||| |||||| ||||||||
Sbjct: 83998386 acagccttctcatcagtaacacatatctgttgagacgtaaattatggatgaattattcgc 83998445
Query: 262 tatctacatgcaaacggagcatccatattctttatttgcctattcatccacgtaggccga 321
|| ||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct: 83998446 tacctacatgcaaatggagcatcaatgttcttcatttgcctattcatccatgtaggccga 83998505
Query: 322 ggtctatactacggatcctatatattcctagaaacatgaaacattggagtagtcctacta 381
|| ||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||
Sbjct: 83998506 ggcctatactacggatcctatatattcctagaaacatgaaacatcggagtaattctatta 83998565
Query: 382 tttaccgttatagcaacagccttcataggctacgtcctgccctgaggacaaatatcattc 441
||||| |||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct: 83998566 tttactgttatagcaacagccttcatgggctacgtcctgccttgagga-aaatatcattc 83998624
Query: 442 tgaggagctacggtcatcacaaatctactatcagctatcccttat-atcggaacagacct 500
||||||||||| ||||||||||| ||| |||||||||| || ||| | |||||| ||||
Sbjct: 83998625 tgaggagctactgtcatcacaaacctattatcagctattccctatgttgggaacaaacct 83998684
Query: 501 cgtagaatgaatctgagggggcttttccgtcgacaaagcaaccctcacacgattcttcgc 560
||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct: 83998685 tgtagaatgaatctgaggaggtttctccgtcgacaaagcaacccttacacgattcttcgc 83998744
Query: 561 cttccactttatcctgccattcatcattaccgccctcgcagccgtacatctcctattcct 620
||||||||| || ||||| |||||||| | ||||||||||| |||||||| |||||||
Sbjct: 83998745 cttccacttcattctgcccttcatcatcgctgccctcgcagctgtacatcttttattcct 83998804
Query: 621 gcacgaaaccggatccaacaaccctaccggaatctcatcagacatagacaaaattccatt 680
||||||||| ||||||| || ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 83998805 acacgaaaccagatccaataatcctactggaatttcatcagacatagacaaaattccatt 83998864
Query: 681 tcacccatactacactattaaagacattctaggagccttatttataatactaatcctact 740
||| ||||||||||| || ||||| |||||||||||| ||||||| |||||| |||||||
Sbjct: 83998865 tcatccatactacaccatcaaagatattctaggagccctatttatgatactagtcctact 83998924
Query: 741 aatccttgtactattctcaccagacctactaggagacccagacaactacaccccagcaaa 800
|| ||| |||||||||||||||||| |||||||||| ||||||||||| |||||||||||
Sbjct: 83998925 aaccctagtactattctcaccagacttactaggagatccagacaactataccccagcaaa 83998984
Query: 801 cccactaaacaccccaccccatattaaaccagaatgatatttcttattcgcct 853
||| |||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 83998985 cccgctaaacacaccaccccacattaaaccagaatgatatttcttatttgcct 83999037
>Sscrofa_ChrX
|| Length = 144288218
Score = 785 bits (396), Expect = 0.0
Identities = 947/1128 (83%), Gaps = 7/1128 (0%)
Strand = Plus / Plus
Query: 22 atgaccaacatccgaaaatcacacccactaataaaaattatcaacaacgcattcattgac 81
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 23487358 atgaccaacatccaaaaatcacacccactaataaaaattatcaacaacacattcattgac 23487417
Query: 82 ctcccagccccctcaaacatctcatcatgatgaaacttcggttccctcttaggcatctgc 141
||||||||||| ||||| ||||||||||||| ||||||||||| ||| |||||||||||
Sbjct: 23487418 ctcccagccccatcaaatgtctcatcatgatggaacttcggttctctcctaggcatctgc 23487477
Query: 142 ctaatcttgcaaatcctaacaggcctgttcttagcaatacattacacatcagacacaaca 201
|||||||| ||||||||||||||||| ||| |||||||||| | |||||| ||||||||
Sbjct: 23487478 ctaatcttacaaatcctaacaggcctattcctagcaatacactgtacatcacacacaaca 23487537
Query: 202 acagctttctcatcagttacacacatttgtcgagacgtaaattacggatgagttattcgc 261
|| || || |||||||| |||||||| || |||| ||| || ||| ||| | ||||||
Sbjct: 23487538 actgccttttcatcagtaacacacatctgccgaggcgtgaactacaaatggatcattcgc 23487597
Query: 262 tatctacatgcaaacggagcatccatattctttatttgcctattcatccacgtaggccga 321
|| || || |||||| ||||||| ||||| || || ||||| || ||||| ||||| |||
Sbjct: 23487598 tacctgcacgcaaacagagcatcaatattgttcatctgcctgtttatccatgtagggcga 23487657
Query: 322 ggtctatactacggatcctatatattcctagaaacatgaaacattggagtagtcctacta 381
|| ||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 23487658 ggcctatactacggatcctacatattcctagaaacgtgaaatatcggagtcatcctacta 23487717
Query: 382 tttaccgttatagcaacagccttcataggctacgtcctgccctgaggacaaatatcattc 441
||||| || ||||||||||| || ||||||||||| | |||||||||||||||||||||
Sbjct: 23487718 tttacagtcatagcaacagcttttataggctacgtattaccctgaggacaaatatcattc 23487777
Query: 442 tgaggagctacggtcatcacaaatctactatcagctatcccttatatcggaacagacctc 501
|| ||||| || |||||||||||||||||||| || ||||| || ||| ||||||||||
Sbjct: 23487778 tggggagcgacagtcatcacaaatctactatcggcaatcccgtacatcagaacagacctt 23487837
Query: 502 gtagaatgaatctgagggggcttttccgtcgacaaagcaaccctcacacgattcttcgcc 561
|||||||||||||| || ||||| ||| | |||||||||||||| ||||||||||| |||
Sbjct: 23487838 gtagaatgaatctggggaggcttctccattgacaaagcaaccctaacacgattctttgcc 23487897
Query: 562 ttccactttatcctgccattcatcattaccgccctcgcagccgtacatctcctattcctg 621
|||||||||||||| || || || || |||||||| ||||||||| | |||||||| ||
Sbjct: 23487898 ttccactttatcctacccttaattatcaccgcccttgcagccgtatacctcctatttctc 23487957
Query: 622 cacgaaaccggatccaacaaccctaccggaatctcatcagacatag-acaaaattccatt 680
|| || || ||||| || ||| | || ||||| || || || |||| | ||||| |||||
Sbjct: 23487958 caggagactggatctaataacaccacaggaatatcgtctgatatagaaaaaaatcccatt 23488017
Query: 681 tcacccatactacactattaaagacattctaggagccttatttataatactaatcctact 740
|||| ||||| || ||||||||||| |||||| | || || |||| ||| |||||||
Sbjct: 23488018 ccacctgtactataccattaaagacatcctaggaactttgttcctaatcctagtcctact 23488077
Query: 741 aatccttgtactattctcaccagacctactaggagacccagacaactacaccccagcaaa 800
||||| |||| ||||||||||| |||||||| |||| |||||||| || ||||||||
Sbjct: 23488078 gatcctaatactgttctcaccagatttactaggataccctgacaactatactccagcaaa 23488137
Query: 801 cccactaaacaccccaccccatattaaaccagaatgatatttcttattcgcctacgctat 860
|||||||| || |||||| | ||||||||||||||||||||| ||||||||||| | ||
Sbjct: 23488138 tccactaaatacaccaccctacattaaaccagaatgatatttcctattcgcctacacaat 23488197
Query: 861 tctacgttcaattcctaataaactaggtggagtgttggccctagtagcctccatcctaat 920
|||| | |||| ||| |||||||||| || | | |||||||| ||| ||||| ||
Sbjct: 23488198 tctatgcccaatccctgataaactaggaggcatactagccctagtgttctcaatcctgat 23488257
Query: 921 cctaattttaatgcccatactacacacatccaaacaacgaggcataatatttcgaccact 980
||| | | || ||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 23488258 tctagtactcatacccatactacacacatccaaacaacgaagcataatatttagaccact 23488317
Query: 981 aagtcaatgcctattctgaatactagtagcagacctcattacactaacatgaattggagg 1040
||| ||||| |||||||||||||||||||||||||| | ||||||| ||||||| ||
Sbjct: 23488318 aagccaatgtttattctgaatactagtagcagacctc---agactaacacgaattggggg 23488374
Query: 1041 acaacccgtagaacacccgttcatcatcatcggccaactagcctccatcttatacttcct 1100
|||||| |||||||| || |||||||||||| |||||||| || || ||||||||||
Sbjct: 23488375 acaacctgtagaacatcc---catcatcatcggacaactagcatcaattctatacttcct 23488431
Query: 1101 aatcattctagtattgataccaatcactagcatcatcgaaaacaacct 1148
| | || |||||| | || ||||| | |||||||| || ||||||||
Sbjct: 23488432 atttatcctagtactcatgccaataatcagcatcattgagaacaacct 23488479
Score = 216 bits (109), Expect = 3e-53
Identities = 202/233 (86%)
Strand = Plus / Minus
Query: 776 acccagacaactacaccccagcaaacccactaaacaccccaccccatattaaaccagaat 835
|||| ||||||||||| ||||||||||||||||| || ||||| ||| | ||||||||||
Sbjct: 16344445 accccgacaactacactccagcaaacccactaaatacaccacctcatgtcaaaccagaat 16344386
Query: 836 gatatttcttattcgcctacgctattctacgttcaattcctaataaactaggtggagtgt 895
|||| ||| | ||||||||||| |||||||| ||||| |||||||||||||| || ||
Sbjct: 16344385 gatacttcctgttcgcctacgcaattctacgctcaatccctaataaactaggaggcgtac 16344326
Query: 896 tggccctagtagcctccatcctaatcctaattttaatgcccatactacacacatccaaac 955
| |||||||||||||| |||||||| ||| | |||| || |||| ||||||||||||||
Sbjct: 16344325 tagccctagtagcctcaatcctaattctagtcctaatacctataccacacacatccaaac 16344266
Query: 956 aacgaggcataatatttcgaccactaagtcaatgcctattctgaatactagta 1008
||||| |||||||||||| |||||| |||||||||||||||||| | ||||||
Sbjct: 16344265 aacgaagcataatatttccaccactgagtcaatgcctattctgagtgctagta 16344213
>Sscrofa_Chr17
|| Length = 69701581
Score = 716 bits (361), Expect = 0.0
Identities = 912/1093 (83%), Gaps = 2/1093 (0%)
Strand = Plus / Plus
Query: 22 atgaccaacatccgaaaatcacacccactaataaaaattatcaacaacgcattcattgac 81
|||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||
Sbjct: 15223372 atgaccaacatccgaaaatcacgcccactaataaaaatgatcaacaatgcattcattgac 15223431
Query: 82 ctcccagccccctcaaacatctcatcatgatgaaacttcggttccctcttaggcatctgc 141
|| |||||||| |||||| |||||||||||||||||||||| |||| | |||||| ||||
Sbjct: 15223432 cttccagccccatcaaacgtctcatcatgatgaaacttcggctcccacctaggcagctgc 15223491
Query: 142 ctaatcttg-caaatcctaacaggcctgttcttagcaatacattacacatcagacacaac 200
|||||||| ||||||||||||||||| ||| ||||||||| ||||||||||| |||||
Sbjct: 15223492 ctaatcttaacaaatcctaacaggcctattcccagcaatacactacacatcagatacaac 15223551
Query: 201 aacagctttctcatcagttacacacatttgtcgagacgtaaattacggatgagttattcg 260
| | || || |||||||| ||||| || || |||||||| |||||||||||| | || ||
Sbjct: 15223552 agctgccttttcatcagtaacacatatctgccgagacgtgaattacggatgaatcatccg 15223611
Query: 261 ctatctacatgcaaacggagcatccatattctttatttgcctattcatccacgtaggccg 320
||| ||||| |||||||||||||| |||||||| || ||||||||||| || ||||| ||
Sbjct: 15223612 ctacctacacgcaaacggagcatcaatattcttcatctgcctattcattcatgtagggcg 15223671
Query: 321 aggtctatactacggatcctatatattcctagaaacatgaaacattggagtagtcctact 380
||| |||||||| |||||||| || || |||| | | |||| | |||| |||||||
Sbjct: 15223672 aggcctatactatggatcctacatgtttgtagagagacgaaatgtcagagtcatcctact 15223731
Query: 381 atttaccgttatagcaacagccttcataggctacgtcctgccctgaggacaaatatcatt 440
|||||| || ||||||||||| || |||||||| || || ||||||||||||||| ||||
Sbjct: 15223732 atttacagtcatagcaacagcttttataggctatgtactaccctgaggacaaataccatt 15223791
Query: 441 ctgaggagctacggtcatcacaaatctactatcagctatcccttatatcggaacagacct 500
||||||| || ||||||||||| |||| ||||| ||||| || ||| ||||||||||
Sbjct: 15223792 tggaggagcaacagtcatcacaaacttactctcagcaatcccatacatccgaacagacct 15223851
Query: 501 cgtagaatgaatctgagggggcttttccgtcgacaaagcaaccctcacacgattcttcgc 560
|| |||||||||||||| ||||| ||| | ||||||| |||||||||| ||||||| ||
Sbjct: 15223852 tgtggaatgaatctgaggaggcttctccattgacaaagtaaccctcacatgattctttgc 15223911
Query: 561 cttccactttatcctgccattcatcattaccgccctcgcagccgtacatctcctattcct 620
|||||||||||| || || |||||||| || ||||| |||||||||| | ||||||||
Sbjct: 15223912 cttccactttattctacccttcatcatcactgcccttgcagccgtacccttactattcct 15223971
Query: 621 gcacgaaaccggatccaacaaccctaccggaatctcatcagacatagacaaaattccatt 680
|| || |||||||| ||||| || || |||||||| || || | ||| ||||| |||||
Sbjct: 15223972 ccatgagaccggatctaacaatcccacaggaatctcgtccgatacagataaaatcccatt 15224031
Query: 681 tcacccatactacactattaaagacattctaggagccttatttataatactaatcctact 740
|| |||||| ||| ||||||||||| |||||||| ||||| ||| ||| ||||||
Sbjct: 15224032 ccatccataccacatcattaaagacatcctaggagctttattcctaagtctagtcctaca 15224091
Query: 741 aatccttgtactattctcaccagacctactaggagacccagacaactacaccccagcaaa 800
|| || ||||||||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct: 15224092 gattctagtactattctcaccagatttactaggagaccctgacaactataccccagcaag 15224151
Query: 801 cccactaaacaccccaccccatattaaaccagaatgatatttcttattcgcctacgctat 860
||||||||| || ||| |||||||||||||||||||||| ||| | | |||| || ||
Sbjct: 15224152 cccactaaatacaccatcccatattaaaccagaatgatacttcctggttgcctctgcaat 15224211
Query: 861 tctacgttcaattcctaataaactaggtggagtgttggccctagtagcctccatcctaat 920
||| | |||||| ||||||||||||| || || | || | |||| |||| ||||| ||
Sbjct: 15224212 cctatgctcaatttctaataaactaggaggcgtactagctccagtatcctcaatcctcat 15224271
Query: 921 cctaattttaatgcccatactacacacatccaaacaacgaggcataatatttcgaccact 980
|||| | | ||||||||||||||||| ||||||||||| |||||| ||| ||||||||
Sbjct: 15224272 cctagtactcgtgcccatactacacacacccaaacaacgaagcataacattccgaccact 15224331
Query: 981 aagtcaatgcctattctgaatactagtagcagacctcattacactaacatgaattggagg 1040
|| ||||| | ||||||||||||||||| |||||| | ||| |||| ||||||||| |
Sbjct: 15224332 gagccaatgtccattctgaatactagtaggggacctcctcacagtaacgtgaattgga-g 15224390
Query: 1041 acaacccgtagaacacccgttcatcatcatcggccaactagcctccatcttatacttcct 1100
|||||| ||||||||||| |||||||| ||| | |||||||| | || ||||||| ||
Sbjct: 15224391 acaacctgtagaacaccccttcatcattatccgacaactagcaccaattctatactttct 15224450
Query: 1101 aatcattctagta 1113
||| |||||||||
Sbjct: 15224451 aattattctagta 15224463
>Sscrofa_Chr11
|| Length = 87690581
Score = 137 bits (69), Expect = 2e-29
Identities = 141/165 (85%)
Strand = Plus / Plus
Query: 140 gcctaatcttgcaaatcctaacaggcctgttcttagcaatacattacacatcagacacaa 199
|||||||||| ||||||||||||||||| ||| ||| |||||| || |||||||||||||
Sbjct: 31567479 gcctaatcttacaaatcctaacaggcctattcctagaaatacactatacatcagacacaa 31567538
Query: 200 caacagctttctcatcagttacacacatttgtcgagacgtaaattacggatgagttattc 259
|||| || || |||||||| |||||||| |||| ||| || ||||| |||||| | ||
Sbjct: 31567539 caactgccttttcatcagtaacacacatctgtcaagatgtgaattatggatgaatcatct 31567598
Query: 260 gctatctacatgcaaacggagcatccatattctttatttgcctat 304
||||||||||||||||| ||||||| ||||| || | ||||||||
Sbjct: 31567599 gctatctacatgcaaacagagcatcaatatttttcacttgcctat 31567643
>gb|GL892964.2| Sus scrofa unplaced genomic scaffold ChrUScaf849
Length = 234075
Score = 85.7 bits (43), Expect = 7e-14
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 1048 gtagaacacccgttcatcatcatcggccaactagcctccatcttatacttcctaatcatt 1107
||||||||||| ||||| || ||||| |||||||| || ||| ||||||||||||||||
Sbjct: 23164 gtagaacacccattcattattatcggacaactagcatctatcctatacttcctaatcatc 23223
Query: 1108 ctagtattgataccaatcactagcatcatcgaaaa 1142
|||||| | |||||| | || ||||||||||||||
Sbjct: 23224 ctagtactaataccagtaaccagcatcatcgaaaa 23258
>Sscrofa_Chr04
|| Length = 143465943
Score = 85.7 bits (43), Expect = 7e-14
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 1048 gtagaacacccgttcatcatcatcggccaactagcctccatcttatacttcctaatcatt 1107
||||||||||| ||||| || ||||| |||||||| || ||| ||||||||||||||||
Sbjct: 42660402 gtagaacacccattcattattatcggacaactagcatctatcctatacttcctaatcatc 42660461
Query: 1108 ctagtattgataccaatcactagcatcatcgaaaa 1142
|||||| | |||||| | || ||||||||||||||
Sbjct: 42660462 ctagtactaataccagtaaccagcatcatcgaaaa 42660496
Score = 85.7 bits (43), Expect = 7e-14
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 1048 gtagaacacccgttcatcatcatcggccaactagcctccatcttatacttcctaatcatt 1107
||||||||||| ||||| || ||||| |||||||| || ||| ||||||||||||||||
Sbjct: 42746214 gtagaacacccattcattattatcggacaactagcatctatcctatacttcctaatcatc 42746273
Query: 1108 ctagtattgataccaatcactagcatcatcgaaaa 1142
|||||| | |||||| | || ||||||||||||||
Sbjct: 42746274 ctagtactaataccagtaaccagcatcatcgaaaa 42746308
>Sscrofa_Chr03
|| Length = 144787322
Score = 71.9 bits (36), Expect = 1e-09
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 662 acatagacaaaattccatttcacccatactacactattaaagacattctagg 713
||||||| ||||||||||| |||||| ||||||| |||||||||||||||||
Sbjct: 44471062 acatagataaaattccattccacccacactacacaattaaagacattctagg 44471113
>gb|JH118695.1| Sus scrofa unplaced genomic scaffold ChrUScaf1824
Length = 44508
Score = 67.9 bits (34), Expect = 2e-08
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 605 tacatctcctattcctgcacgaaaccggatccaacaaccctaccggaatctcatcagaca 664
||||||| ||||| || || ||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 23883 tacatcttctatttctacatgaaactggatccaacaacccaacgggaatttcatcagaca 23824
Query: 665 tagaca 670
||||||
Sbjct: 23823 tagaca 23818
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,758,732
Number of extensions: 222
Number of successful extensions: 222
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 22
Length of query: 1638
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1616
Effective length of database: 2,808,408,574
Effective search space: 4538388255584
Effective search space used: 4538388255584
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)