Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000527
(1024 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178341.1| ribosomal protein L21 [Bos taurus]. 330 2e-90
Alignment gi|XP_002691885.1| PREDICTED: ribosomal protein L21 isoform 3 [... 330 2e-90
Alignment gi|XP_002691884.1| PREDICTED: ribosomal protein L21 isoform 2 [... 330 2e-90
Alignment gi|XP_002691883.1| PREDICTED: ribosomal protein L21 isoform 1 [... 330 2e-90
Alignment gi|XP_002700972.1| PREDICTED: ribosomal protein L21 [Bos taurus]. 330 2e-90
Alignment gi|XP_876960.1| PREDICTED: ribosomal protein L21 isoform 5 [Bos... 330 2e-90
Alignment gi|XP_002699790.1| PREDICTED: ribosomal protein L21-like [Bos t... 323 2e-88
Alignment gi|XP_001250469.1| PREDICTED: ribosomal protein L21-like isofor... 323 2e-88
Alignment gi|XP_002696947.1| PREDICTED: ribosomal protein L21-like [Bos t... 322 4e-88
Alignment gi|XP_001790549.1| PREDICTED: ribosomal protein L21-like [Bos t... 322 4e-88
>ref|NP_001178341.1| ribosomal protein L21 [Bos taurus].
Length = 160
Score = 330 bits (845), Expect = 2e-90
Identities = 158/160 (98%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIY+KGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_002691885.1| PREDICTED: ribosomal protein L21 isoform 3 [Bos taurus].
Length = 160
Score = 330 bits (845), Expect = 2e-90
Identities = 158/160 (98%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIY+KGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_002691884.1| PREDICTED: ribosomal protein L21 isoform 2 [Bos taurus].
Length = 160
Score = 330 bits (845), Expect = 2e-90
Identities = 158/160 (98%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIY+KGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_002691883.1| PREDICTED: ribosomal protein L21 isoform 1 [Bos taurus].
Length = 160
Score = 330 bits (845), Expect = 2e-90
Identities = 158/160 (98%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIY+KGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_002700972.1| PREDICTED: ribosomal protein L21 [Bos taurus].
Length = 160
Score = 330 bits (845), Expect = 2e-90
Identities = 158/160 (98%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIY+KGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_876960.1| PREDICTED: ribosomal protein L21 isoform 5 [Bos taurus].
Length = 160
Score = 330 bits (845), Expect = 2e-90
Identities = 158/160 (98%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIY+KGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_002699790.1| PREDICTED: ribosomal protein L21-like [Bos taurus].
Length = 160
Score = 323 bits (828), Expect = 2e-88
Identities = 155/160 (96%), Positives = 159/160 (99%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKR+GT YMFSRPFRKHGVVPLATYMRIY+KGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRQGTCYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVY+VTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYSVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_001250469.1| PREDICTED: ribosomal protein L21-like isoform 1 [Bos taurus].
Length = 160
Score = 323 bits (828), Expect = 2e-88
Identities = 155/160 (96%), Positives = 159/160 (99%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKR+GT YMFSRPFRKHGVVPLATYMRIY+KGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRQGTCYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVY+VTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYSVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_002696947.1| PREDICTED: ribosomal protein L21-like [Bos taurus].
Length = 160
Score = 322 bits (824), Expect = 4e-88
Identities = 155/160 (96%), Positives = 158/160 (98%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGT YMFSRPFRKHGVVPLATYMRIY+KGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTCYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRV+E+DQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVEEDDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLK QPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKHQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_001790549.1| PREDICTED: ribosomal protein L21-like [Bos taurus].
Length = 160
Score = 322 bits (824), Expect = 4e-88
Identities = 155/160 (96%), Positives = 158/160 (98%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGT YMFSRPFRKHGVVPLATYMRIY+KGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTCYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRV+E+DQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVEEDDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLK QPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKHQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,958,023
Number of extensions: 833186
Number of successful extensions: 3029
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 3002
Number of HSP's successfully gapped: 19
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000527
(1024 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859688.1| PREDICTED: similar to ribosomal protein L21 iso... 331 6e-91
Alignment gi|XP_859658.1| PREDICTED: similar to ribosomal protein L21 iso... 331 6e-91
Alignment gi|XP_859628.1| PREDICTED: similar to ribosomal protein L21 iso... 331 6e-91
Alignment gi|XP_534524.1| PREDICTED: similar to ribosomal protein L21 iso... 331 6e-91
Alignment gi|XP_849697.1| PREDICTED: similar to ribosomal protein L21 iso... 331 6e-91
Alignment gi|XP_864516.1| PREDICTED: similar to ribosomal protein L21 iso... 331 6e-91
Alignment gi|XP_864500.1| PREDICTED: similar to ribosomal protein L21 iso... 331 6e-91
Alignment gi|XP_534399.1| PREDICTED: similar to ribosomal protein L21 iso... 331 6e-91
Alignment gi|XP_860355.1| PREDICTED: similar to 60S ribosomal protein L21... 328 4e-90
Alignment gi|XP_860327.1| PREDICTED: similar to 60S ribosomal protein L21... 328 4e-90
>ref|XP_859688.1| PREDICTED: similar to ribosomal protein L21 isoform 7 [Canis
familiaris].
Length = 160
Score = 331 bits (849), Expect = 6e-91
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_859658.1| PREDICTED: similar to ribosomal protein L21 isoform 6 [Canis
familiaris].
Length = 160
Score = 331 bits (849), Expect = 6e-91
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_859628.1| PREDICTED: similar to ribosomal protein L21 isoform 5 [Canis
familiaris].
Length = 160
Score = 331 bits (849), Expect = 6e-91
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_534524.1| PREDICTED: similar to ribosomal protein L21 isoform 1 [Canis
familiaris].
Length = 160
Score = 331 bits (849), Expect = 6e-91
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_849697.1| PREDICTED: similar to ribosomal protein L21 isoform 3 [Canis
familiaris].
Length = 160
Score = 331 bits (849), Expect = 6e-91
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_864516.1| PREDICTED: similar to ribosomal protein L21 isoform 4 [Canis
familiaris].
Length = 160
Score = 331 bits (849), Expect = 6e-91
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_864500.1| PREDICTED: similar to ribosomal protein L21 isoform 3 [Canis
familiaris].
Length = 160
Score = 331 bits (849), Expect = 6e-91
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_534399.1| PREDICTED: similar to ribosomal protein L21 isoform 1 [Canis
familiaris].
Length = 160
Score = 331 bits (849), Expect = 6e-91
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_860355.1| PREDICTED: similar to 60S ribosomal protein L21 isoform 6 [Canis
familiaris].
Length = 160
Score = 328 bits (842), Expect = 4e-90
Identities = 159/160 (99%), Positives = 159/160 (99%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYN TQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNDTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_860327.1| PREDICTED: similar to 60S ribosomal protein L21 isoform 5 [Canis
familiaris].
Length = 160
Score = 328 bits (842), Expect = 4e-90
Identities = 159/160 (99%), Positives = 159/160 (99%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYN TQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNDTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,232,374
Number of extensions: 809410
Number of successful extensions: 3159
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 3148
Number of HSP's successfully gapped: 38
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000527
(1024 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000973.2| 60S ribosomal protein L21 [Homo sapiens]. 331 6e-91
>ref|NP_000973.2| 60S ribosomal protein L21 [Homo sapiens].
Length = 160
Score = 331 bits (849), Expect = 6e-91
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,604,906
Number of extensions: 800644
Number of successful extensions: 3076
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3052
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000527
(1024 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003085130.1| PREDICTED: 60S ribosomal protein L21-like [M... 331 6e-91
Alignment gi|XP_001473226.1| PREDICTED: 60S ribosomal protein L21-like [M... 331 6e-91
Alignment gi|XP_003084547.1| PREDICTED: 60S ribosomal protein L21-like [M... 331 6e-91
Alignment gi|XP_001476570.1| PREDICTED: 60S ribosomal protein L21-like [M... 331 6e-91
Alignment gi|XP_003086010.1| PREDICTED: 60S ribosomal protein L21-like [M... 331 6e-91
Alignment gi|NP_062621.2| 60S ribosomal protein L21 [Mus musculus]. 331 6e-91
Alignment gi|XP_001480448.1| PREDICTED: 60S ribosomal protein L21-like is... 330 1e-90
Alignment gi|XP_003085811.1| PREDICTED: 60S ribosomal protein L21-like [M... 330 1e-90
Alignment gi|XP_001479181.1| PREDICTED: 60S ribosomal protein L21 [Mus mu... 328 5e-90
Alignment gi|XP_003085875.1| PREDICTED: 60S ribosomal protein L21 [Mus mu... 328 5e-90
>ref|XP_003085130.1| PREDICTED: 60S ribosomal protein L21-like [Mus musculus].
Length = 160
Score = 331 bits (848), Expect = 6e-91
Identities = 159/160 (99%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_001473226.1| PREDICTED: 60S ribosomal protein L21-like [Mus musculus].
Length = 160
Score = 331 bits (848), Expect = 6e-91
Identities = 159/160 (99%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_003084547.1| PREDICTED: 60S ribosomal protein L21-like [Mus musculus].
Length = 160
Score = 331 bits (848), Expect = 6e-91
Identities = 159/160 (99%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_001476570.1| PREDICTED: 60S ribosomal protein L21-like [Mus musculus].
Length = 160
Score = 331 bits (848), Expect = 6e-91
Identities = 159/160 (99%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_003086010.1| PREDICTED: 60S ribosomal protein L21-like [Mus musculus].
Length = 160
Score = 331 bits (848), Expect = 6e-91
Identities = 159/160 (99%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|NP_062621.2| 60S ribosomal protein L21 [Mus musculus].
Length = 160
Score = 331 bits (848), Expect = 6e-91
Identities = 159/160 (99%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_001480448.1| PREDICTED: 60S ribosomal protein L21-like isoform 2 [Mus musculus].
Length = 160
Score = 330 bits (845), Expect = 1e-90
Identities = 158/160 (98%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRD+FLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDNFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_003085811.1| PREDICTED: 60S ribosomal protein L21-like [Mus musculus].
Length = 160
Score = 330 bits (845), Expect = 1e-90
Identities = 158/160 (98%), Positives = 160/160 (100%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRD+FLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDNFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_001479181.1| PREDICTED: 60S ribosomal protein L21 [Mus musculus].
Length = 160
Score = 328 bits (840), Expect = 5e-90
Identities = 158/160 (98%), Positives = 159/160 (99%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTN KEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNRKEPELLEPIPYEFMA 160
>ref|XP_003085875.1| PREDICTED: 60S ribosomal protein L21 [Mus musculus].
Length = 160
Score = 328 bits (840), Expect = 5e-90
Identities = 158/160 (98%), Positives = 159/160 (99%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
TGRVYNVTQHAVGI+VNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLKRQPAPPREAHFVRTN KEPELLEPIPYEFMA
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNRKEPELLEPIPYEFMA 160
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,437,931
Number of extensions: 678445
Number of successful extensions: 2970
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 2886
Number of HSP's successfully gapped: 34
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000527
(1024 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361340.1| PREDICTED: 60S ribosomal protein L21-like [S... 211 7e-55
>ref|XP_003361340.1| PREDICTED: 60S ribosomal protein L21-like [Sus scrofa].
Length = 211
Score = 211 bits (536), Expect = 7e-55
Identities = 108/160 (67%), Positives = 116/160 (72%)
Frame = +1
Query: 250 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 429
MT+TK KRRGT YMFSRPFRKHGVVPLA+YM+IYKKGDIV IKGMGTVQKGMP
Sbjct: 1 MTDTKAKRRGTHYMFSRPFRKHGVVPLASYMQIYKKGDIVAIKGMGTVQKGMP------- 53
Query: 430 TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 609
+NV I+H+K+SKS+DSFL VKEN QKKKEAK
Sbjct: 54 ----------------------------LNVHIKHLKYSKSQDSFLNHVKENSQKKKEAK 85
Query: 610 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 729
EKGTWVQLK QP PPREAHFVRTNGKEPELLEPIPYEFMA
Sbjct: 86 EKGTWVQLKHQPTPPREAHFVRTNGKEPELLEPIPYEFMA 125
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,306,019
Number of extensions: 605173
Number of successful extensions: 1912
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1905
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000527
(1024 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 757 0.0
Sscrofa_Chr13 726 0.0
Sscrofa_Chr06 688 0.0
Sscrofa_Chr14 599 e-168
Sscrofa_ChrX 456 e-125
Sscrofa_Chr11 452 e-124
gb|GL894058.2| Sus scrofa unplaced genomic scaffold ChrUScaf1942 357 8e-96
Sscrofa_Chr02 351 5e-94
gb|GL894506.2| Sus scrofa unplaced genomic scaffold ChrUScaf2390 301 4e-79
gb|GL895853.2| Sus scrofa unplaced genomic scaffold ChrUScaf3737 283 9e-74
>Sscrofa_Chr05
|| Length = 111506441
Score = 757 bits (382), Expect = 0.0
Identities = 511/553 (92%), Gaps = 2/553 (0%)
Strand = Plus / Plus
Query: 210 cttttcggccggcaccgccatcttccagtaattcgccaaaatgacaaacacgaagggaaa 269
||||||||| ||||| |||||||||||||||||| |||||||||| || |||||||||
Sbjct: 93784479 cttttcggctggcactgccatcttccagtaattctccaaaatgactgacgtgaagggaaa 93784538
Query: 270 gaggaggggcacccgctatatgttctctcggccttttagaaaacatggagtcgttccttt 329
|||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 93784539 gaggaggggcacccactatatgttctctaggccttttagaaaacatggagttgttccttt 93784598
Query: 330 ggccacatacatgcgaatctacaagaaaggtgatattgtagacatcaagggaatgggcac 389
||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 93784599 ggcatcatacatgcaaatctacaagaaaggtgatattgtagccatcaagggaatgggtac 93784658
Query: 390 tgttcaaaaaggaatgccccacaagtgttaccatggcaaaactggaagagtctacaatgt 449
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 93784659 tgttcaaaaaggaatgccacacaaatgttaccatggcaaaactggaagagtctacagtgt 93784718
Query: 450 aacccagcatgctgttggcattgttgtaaacaaacaggttaagggcaagattcttgcca- 508
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||
Sbjct: 93784719 aacccagcatgctgttggcattgttggaaacaaacaagttaagggcaagattcttcccaa 93784778
Query: 509 -agagaattaatgtgcgtatcgagcatatcaaacactctaagagccgagacagcttcctg 567
| | ||||||||||| |||| ||||| | |||||||||||||||| |||||||||||||
Sbjct: 93784779 tataaaattaatgtgcatatcaagcatcttaaacactctaagagccaagacagcttcctg 93784838
Query: 568 aaacgtgtgaaggaaaacgatcagaaaaagaaggaagccaaagagaaagggacttgggtt 627
|| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 93784839 aaccatgtgaaggaaaacagtcagaaaaagaaggaagccaaagagaaagggacttgggtt 93784898
Query: 628 cagctgaagcgccagcctgctccacccagagaagctcacttcgtgagaaccaacggaaag 687
|||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 93784899 cagctgaagcaccagcctactccacccagagaagctcactttgtgagaaccaatggaaag 93784958
Query: 688 gagcctgaactgttggaacccattccttatgaattcatggcatgatgagtgtaaagaaaa 747
||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct: 93784959 gagcctgaactgttggaacccattccttatgaattcatgacatggtaagtgtaaagaaaa 93785018
Query: 748 taaaagacttaga 760
|||||||| ||||
Sbjct: 93785019 taaaagacctaga 93785031
Score = 446 bits (225), Expect = e-122
Identities = 461/542 (85%), Gaps = 27/542 (4%)
Strand = Plus / Minus
Query: 219 cggcaccgccatcttccagtaattcgccaaaatgacaaacacgaagggaaagaggagggg 278
||||||| |||||||||||| |||| |||||||||| || || |||||| |||||||||
Sbjct: 39421399 cggcaccaccatcttccagtcattcaccaaaatgaccaatacaaagggagagaggaggg- 39421341
Query: 279 cacccgctatatgttctctcggccttttagaaaacatggagtcgttcctttggccacata 338
|| ||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct: 39421340 catccgctctatgttctctaagccctttagaaaacatggagttgttcctttggccacata 39421281
Query: 339 catgcgaatctacaagaaaggtgatattgtagacatcaagggaatgggcactgttcaaaa 398
|||| ||| | ||||| ||| |||||||||| ||||||||||||
Sbjct: 39421280 catgagaaattccaaga----------------cataaagggaatggacactgttcaaaa 39421237
Query: 399 aggaatgccccacaagtgttaccatggcaaaactggaagagtctacaatgtaacccagca 458
||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct: 39421236 aggaatgcctcacaaatgttaccatggcaaaactgtaagagtccacaatgtaacccatca 39421177
Query: 459 tgctgttggcattgttgtaaacaaacaggttaagggcaagattcttgccaagagaattaa 518
|||||| |||||||| ||||||||| |||||||| |||||| |||||||||||||| |
Sbjct: 39421176 tgctgtaggcattgt---aaacaaacaagttaagggtaagattgttgccaagagaattca 39421120
Query: 519 tgtgcgtatcgagcatatcaaacactctaagagccgagacagcttcctgaaacgtgtgaa 578
||||| ||| |||||||| || |||||||||| ||||||||||||| |||| ||
Sbjct: 39421119 tgtgcatattgagcatattaagcactctaaga-------cagcttcctgaaatgtgtaaa 39421067
Query: 579 ggaaaacgatcagaaaaagaaggaagccaaagagaaagggacttgggttcagctgaagcg 638
||||| | |||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct: 39421066 ggaaacccatcagaaaaagaaggaagccaaagagaaagttacctgggttcagctgaagtg 39421007
Query: 639 ccagcctgctccacccagagaagctcacttcgtgagaaccaacggaaaggagcctgaact 698
|||||||||||| |||||||||||||||||||||||| ||| | |||||||||||| |
Sbjct: 39421006 acagcctgctccatccagagaagctcacttcgtgagaagcaatgaaaaggagcctgacgt 39420947
Query: 699 gttggaacccattccttatgaattcatggcatgatgagtgtaaagaaaataaaagactta 758
||| |||| |||||| ||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 39420946 gttagaacacattccctataaattcatggcatgataagtgtaaagaaaataaaagaccta 39420887
Query: 759 ga 760
||
Sbjct: 39420886 ga 39420885
Score = 446 bits (225), Expect = e-122
Identities = 461/542 (85%), Gaps = 27/542 (4%)
Strand = Plus / Minus
Query: 219 cggcaccgccatcttccagtaattcgccaaaatgacaaacacgaagggaaagaggagggg 278
||||||| |||||||||||| |||| |||||||||| || || |||||| |||||||||
Sbjct: 39451379 cggcaccaccatcttccagtcattcaccaaaatgaccaatacaaagggagagaggaggg- 39451321
Query: 279 cacccgctatatgttctctcggccttttagaaaacatggagtcgttcctttggccacata 338
|| ||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct: 39451320 catccgctctatgttctctaagccctttagaaaacatggagttgttcctttggccacata 39451261
Query: 339 catgcgaatctacaagaaaggtgatattgtagacatcaagggaatgggcactgttcaaaa 398
|||| ||| | ||||| ||| |||||||||| ||||||||||||
Sbjct: 39451260 catgagaaattccaaga----------------cataaagggaatggacactgttcaaaa 39451217
Query: 399 aggaatgccccacaagtgttaccatggcaaaactggaagagtctacaatgtaacccagca 458
||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct: 39451216 aggaatgcctcacaaatgttaccatggcaaaactgtaagagtccacaatgtaacccatca 39451157
Query: 459 tgctgttggcattgttgtaaacaaacaggttaagggcaagattcttgccaagagaattaa 518
|||||| |||||||| ||||||||| |||||||| |||||| |||||||||||||| |
Sbjct: 39451156 tgctgtaggcattgt---aaacaaacaagttaagggtaagattgttgccaagagaattca 39451100
Query: 519 tgtgcgtatcgagcatatcaaacactctaagagccgagacagcttcctgaaacgtgtgaa 578
||||| ||| |||||||| || |||||||||| ||||||||||||| |||| ||
Sbjct: 39451099 tgtgcatattgagcatattaagcactctaaga-------cagcttcctgaaatgtgtaaa 39451047
Query: 579 ggaaaacgatcagaaaaagaaggaagccaaagagaaagggacttgggttcagctgaagcg 638
||||| | |||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct: 39451046 ggaaacccatcagaaaaagaaggaagccaaagagaaagttacctgggttcagctgaagtg 39450987
Query: 639 ccagcctgctccacccagagaagctcacttcgtgagaaccaacggaaaggagcctgaact 698
|||||||||||| |||||||||||||||||||||||| ||| | |||||||||||| |
Sbjct: 39450986 acagcctgctccatccagagaagctcacttcgtgagaagcaatgaaaaggagcctgacgt 39450927
Query: 699 gttggaacccattccttatgaattcatggcatgatgagtgtaaagaaaataaaagactta 758
||| |||| |||||| ||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 39450926 gttagaacacattccctataaattcatggcatgataagtgtaaagaaaataaaagaccta 39450867
Query: 759 ga 760
||
Sbjct: 39450866 ga 39450865
Score = 153 bits (77), Expect = 2e-34
Identities = 165/193 (85%), Gaps = 1/193 (0%)
Strand = Plus / Plus
Query: 247 aaaatgacaaacacgaagggaaagaggaggggcacccgctatatgttctctcggcctttt 306
|||||||| ||||| |||| ||| ||||| | || |||||||||||||| ||||||||
Sbjct: 46036325 aaaatgaccaacacaaaggaaaataggagaagtacttgctatatgttctctaggcctttt 46036384
Query: 307 agaaaa-catggagtcgttcctttggccacatacatgcgaatctacaagaaaggtgatat 365
|||||| ||||||| |||||||||| |||||||||| ||||||||| ||||||||| |
Sbjct: 46036385 agaaaaacatggagctgttcctttggtcacatacatgtgaatctacatgaaaggtgacac 46036444
Query: 366 tgtagacatcaagggaatgggcactgttcaaaaaggaatgccccacaagtgttaccatgg 425
|||||||||||||||||||| || |||||||||||||| || || |||||| ||||
Sbjct: 46036445 cgtagacatcaagggaatgggtacagttcaaaaaggaatacctggtaactgttactatgg 46036504
Query: 426 caaaactggaaga 438
|||||||||||||
Sbjct: 46036505 caaaactggaaga 46036517
Score = 123 bits (62), Expect = 2e-25
Identities = 101/113 (89%), Gaps = 2/113 (1%)
Strand = Plus / Plus
Query: 825 tagattgtaaaaacgtttctcttaattgaatggaagtgtttt--ctcctcctccagagaa 882
|||| |||||||| ||||||||||||| |||| ||||||| | ||||||||||| ||||
Sbjct: 93785028 tagactgtaaaaatgtttctcttaattaaatgcaagtgttatgtctcctcctccaaagaa 93785087
Query: 883 atgtttaaagcaggttttgtgttcaaattcagtgggtggtgtctttactattc 935
|| |||||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct: 93785088 atatttaaagcagattttgtgttcacattcagtgggtgatgtctttactattc 93785140
>Sscrofa_Chr13
|| Length = 218635234
Score = 726 bits (366), Expect = 0.0
Identities = 494/536 (92%), Gaps = 8/536 (1%)
Strand = Plus / Plus
Query: 229 atcttccagtaattcgccaaaatgacaaacacgaagggaaagaggaggggcacccgctat 288
||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 94057215 atcttccagtaattcaccaaaatgaccaacacaaagggaaagaggaggggcacctgctat 94057274
Query: 289 atgttctctcggccttttagaaaacatggagtcgttcctttggccacatacatgcgaatc 348
|||||||| |||||||| ||||||||||||| |||||||||||||||||||| || ||
Sbjct: 94057275 gtgttctctaggccttttggaaaacatggagttgttcctttggccacatacattggattc 94057334
Query: 349 tacaagaaaggtgatattgtagacatcaagggaatgggcactgttcaaaaaggaatgccc 408
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94057335 tacaagaaaggtgatattgtagacatcaagggaatgggcactgttcaaaaaggaatgcca 94057394
Query: 409 cacaagtgttaccatggcaaaactggaagagtctacaatgtaacccagcatgctgttggc 468
||||| ||||||||||||||||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 94057395 cacaaatgttaccatggcaaaactgaaagagtctgcaatgtaacccagtatgctgttggc 94057454
Query: 469 attgttgtaaacaaacaggttaagggcaagattcttgccaagagaattaatgtgcgtatc 528
||||||||||||| |||||||| ||| ||||||||||||||||||| | ||||
Sbjct: 94057455 attgttgtaaaca-----gttaagggtaag---cttgccaagagaattaatgagtgtatt 94057506
Query: 529 gagcatatcaaacactctaagagccgagacagcttcctgaaacgtgtgaaggaaaacgat 588
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 94057507 gagcatatcaaacactctaagagccgagacagcttcctgaatcttgtgaaggaaaacgat 94057566
Query: 589 cagaaaaagaaggaagccaaagagaaagggacttgggttcagctgaagcgccagcctgct 648
||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||
Sbjct: 94057567 cagaaaaagaaggaagccaaagaaaaagggacttgggttcagctgaagtgccagcgtgct 94057626
Query: 649 ccacccagagaagctcacttcgtgagaaccaacggaaaggagcctgaactgttggaaccc 708
||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct: 94057627 ccacccagagaagctcacttcatgagaaccaatggaaagaagcctgaactgttggaaccg 94057686
Query: 709 attccttatgaattcatggcatgatgagtgtaaagaaaataaaagacttagattgt 764
|||| |||||||||||||||||||| |||||||||||| ||| |||| ||||||||
Sbjct: 94057687 attctttatgaattcatggcatgataagtgtaaagaaactaagagacctagattgt 94057742
Score = 406 bits (205), Expect = e-111
Identities = 460/539 (85%), Gaps = 17/539 (3%)
Strand = Plus / Plus
Query: 228 catcttccagtaattcgccaaaatgacaaacacgaagggaaagaggaggggcacccgct- 286
||||| |||||||||| ||||||||| ||||| ||||||| |||||||| ||| |||
Sbjct: 145921227 catctcccagtaattcatcaaaatgaccaacacaaagggaaggaggaggg-cacgtgctc 145921285
Query: 287 ata-tgttctctcggccttttagaaaacatggagtcgttcctttggccacatacatgcga 345
||| |||| || |||||||||||||||| ||| | | || || ||||||| |||||||
Sbjct: 145921286 ataatgttttccaggccttttagaaaacacggaattgatctttcagccacattcatgcga 145921345
Query: 346 atctacaagaaaggtgatattgtagacatca--------agggaatgggcactgttcaaa 397
|||||||| ||||||||||||||||||| | ||||||||||||||||| ||
Sbjct: 145921346 atctacaaaaaaggtgatattgtagacagtatccttaatagggaatgggcactgttggaa 145921405
Query: 398 aaggaatgccccacaagtgttaccatggcaaaactggaagagtctacaatgtaacccagc 457
|||| ||||| | || ||| ||||||||||||| ||||||| || |||||| ||||||
Sbjct: 145921406 aaggcatgccacgcagatgtcaccatggcaaaac-ggaagagactgcaatgtcacccagt 145921464
Query: 458 atgctgttggcattgttgtaaacaaacaggttaagggcaagattcttgccaagagaatta 517
||| |||||||| || || |||||| ||||| |||||||||||||||||||||||||
Sbjct: 145921465 atgatgttggcactgctggaaacaa----gttaacggcaagattcttgccaagagaatta 145921520
Query: 518 atgtgcgtatcgagcatatcaaa-cactctaagagccgagacagcttcctgaaacgtgtg 576
||||| || | ||||| || || |||| |||||||| ||||||||||||||||| ||||
Sbjct: 145921521 atgtgtgtgtggagcacatttaagcactttaagagccaagacagcttcctgaaacctgtg 145921580
Query: 577 aaggaaaacgatcagaaaaagaaggaagccaaagagaaagggacttgggttcagctgaag 636
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 145921581 aaggaaaacgatcagaaaaagaaggaagccaaagagaaaggtacttgggttcagtggaag 145921640
Query: 637 cgccagcctgctccacccagagaagctcacttcgtgagaaccaacggaaaggagcctgaa 696
||||||| |||||||| |||||||||||| ||| ||||| |||| |||||||||||||||
Sbjct: 145921641 cgccagcttgctccactcagagaagctcagttcctgagagccaatggaaaggagcctgaa 145921700
Query: 697 ctgttggaacccattccttatgaattcatggcatgatgagtgtaaagaaaataaaagac 755
|||||||||||||||| ||||||||| ||||||| | |||||||||||||||||||||
Sbjct: 145921701 ctgttggaacccattctctatgaattcgtggcatggtaagtgtaaagaaaataaaagac 145921759
Score = 264 bits (133), Expect = 9e-68
Identities = 307/363 (84%), Gaps = 9/363 (2%)
Strand = Plus / Plus
Query: 393 tcaaaaaggaatgccccacaagtgttaccatggcaaaactggaagagtctacaatgtaac 452
|||||| |||||||||||||| ||||||||||||||||||| | | |||||| ||||
Sbjct: 211019416 tcaaaagggaatgccccacaaatgttaccatggcaaaactg-aggcatctacagcataac 211019474
Query: 453 ccagcatgctgttggcattgttgtaaacaaacaggttaagggcaagattcttgccaagag 512
||||||||||||||||| || |||||||| ||| | |||||||||||||||||||| ||
Sbjct: 211019475 ccagcatgctgttggcactgctgtaaacacacaaatgaagggcaagattcttgccaaaag 211019534
Query: 513 aattaatgtgcgtatcgagcatatcaaacactctaagagccgagacagcttcctgaaacg 572
||| ||| ||| ||||| | ||| | |||| |||||| ||||||||||||||| |
Sbjct: 211019535 aata----tgcatattgagcacaacaagccctctgagagccaagacagcttcctgaatca 211019590
Query: 573 tgtgaaggaaaacgatcagaaaaagaaggaagccaaagagaaagggacttgggttcagct 632
|||||||||||| ||||| ||||||||||||||||||||||| || ||||||||| |
Sbjct: 211019591 tgtgaaggaaaatgatca----aagaaggaagccaaagagaaaggaacctgggttcaggt 211019646
Query: 633 gaagcgccagcctgctccacccagagaagctcacttcgtgagaaccaacggaaaggagcc 692
|||| ||||||||| |||||||||||||| | ||| |||||| |||| ||||||||| |
Sbjct: 211019647 gaagtgccagcctgttccacccagagaaggaccctttgtgagacccaatggaaaggagtc 211019706
Query: 693 tgaactgttggaacccattccttatgaattcatggcatgatgagtgtaaagaaaataaaa 752
||||||| ||||| ||||||| |||||||||||| ||||| ||||||||||||| |||
Sbjct: 211019707 tgaactgctggaatccattccccatgaattcatgggatgataggtgtaaagaaaatgaaa 211019766
Query: 753 gac 755
|||
Sbjct: 211019767 gac 211019769
Score = 143 bits (72), Expect = 2e-31
Identities = 222/271 (81%), Gaps = 7/271 (2%)
Strand = Plus / Plus
Query: 452 cccagcatgctgttggcattgttgtaaacaaacaggttaagggcaagattcttgccaaga 511
||||||||||||||||||||| | |||||||| | || ||| |||||||||||||
Sbjct: 130935519 cccagcatgctgttggcattgctataaacaaagaagtaaag------attcttgccaaga 130935572
Query: 512 gaattaatgtgcgtatcgagcatatcaaacactctaagagccgagacagcttcctgaaac 571
||| |||||||| || |||||||||| | |||||||||| |||| |||||||||||||
Sbjct: 130935573 gaactaatgtgcatactaagcatatcaagccctctaagagcagagagagcttcctgaaac 130935632
Query: 572 gtgtgaaggaaaacgatcagaaaaagaaggaagccaaagagaaagggacttgggttcagc 631
|| |||||| | ||| |||||||||||||| | ||||||| | ||||||| ||| |
Sbjct: 130935633 atgcacaggaaagcaatcggaaaaagaaggaag-ctgagagaaaagtacttgggctcaac 130935691
Query: 632 tgaagcgccagcctgctccacccagagaagctcacttcgtgagaaccaacggaaaggagc 691
||||| |||||||||||| || | |||||| ||||| |||||||||| |||||| |||
Sbjct: 130935692 agaagcaccagcctgctcctcctaaagaagcacactttgtgagaaccagtggaaagcagc 130935751
Query: 692 ctgaactgttggaacccattccttatgaatt 722
||||||| ||||||||| ||| | ||||||
Sbjct: 130935752 ttgaactgctggaacccagtccctgtgaatt 130935782
Score = 125 bits (63), Expect = 5e-26
Identities = 126/147 (85%)
Strand = Plus / Plus
Query: 226 gccatcttccagtaattcgccaaaatgacaaacacgaagggaaagaggaggggcacccgc 285
|||||||||||| |||| ||||||||||| |||| |||| ||||| ||| ||||||| |
Sbjct: 130935039 gccatcttccagcaatttgccaaaatgaccgacacaaaggcaaagaagagaggcaccctc 130935098
Query: 286 tatatgttctctcggccttttagaaaacatggagtcgttcctttggccacatacatgcga 345
| |||||||||| |||| |||||||||||||| | ||||||| ||||||| |||| ||
Sbjct: 130935099 tgtatgttctctacgcctattagaaaacatggaattgttccttcagccacatccatggga 130935158
Query: 346 atctacaagaaaggtgatattgtagac 372
|||||||| ||||||||||||| ||||
Sbjct: 130935159 atctacaacaaaggtgatattgcagac 130935185
Score = 61.9 bits (31), Expect = 6e-07
Identities = 75/87 (86%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 235 cagtaattcgccaaaatgacaaacacgaagggaaagaggaggggcacccgctatatgttc 294
|||||||| ||||||||||| ||||| | ||| ||| |||||||| || || |||||||
Sbjct: 211019023 cagtaatttgccaaaatgaccaacactcaaggagagaagaggggcatcc-ctctatgttc 211019081
Query: 295 tctcggccttttag-aaaacatggagt 320
||| |||||||||| ||||||||||||
Sbjct: 211019082 tctaggccttttagaaaaacatggagt 211019108
>Sscrofa_Chr06
|| Length = 157765593
Score = 688 bits (347), Expect = 0.0
Identities = 504/551 (91%), Gaps = 4/551 (0%)
Strand = Plus / Plus
Query: 210 cttttcggccggcaccgccatcttccagtaattcgccaaaatgacaaacacgaagggaaa 269
||||| ||| ||||| |||||||||||||||||| |||||||||| ||||| | |||||
Sbjct: 46584995 ctttttggctggcactgccatcttccagtaattcaccaaaatgaccaacacaaggggaag 46585054
Query: 270 gaggaggggcacccgctatatgttctctcggccttttagaaaacatggagtcgttccttt 329
|||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 46585055 gaggagggacacccgctatatgttctctaggccttttagaaaacatggagctgttccttt 46585114
Query: 330 ggccacatacatgcgaatctacaagaaaggtgatattgtagacatcaagggaatgggcac 389
|||||||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct: 46585115 ggccacatacatatgaatctacaagaaaggtgatactgtagacagcaaggggatgggcac 46585174
Query: 390 tgttcaaaaaggaatgccccacaagtgttaccatggcaaaactggaagagtctacaatgt 449
||||| ||||||||||| ||| ||||||||||| |||||||||||||||||| |||
Sbjct: 46585175 tgttc-aaaaggaatgcagtgcaaaagttaccatggc-aaactggaagagtctacagtgt 46585232
Query: 450 aacccagcatgctgttggcattgttgtaaacaaacaggttaagggcaagattcttgccaa 509
| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 46585233 agtccagcatgctgttggcattgctgtaaacaaacaagttaagggcaagattcttgccaa 46585292
Query: 510 gagaattaatgtgcgtatcgagcatatcaaacactctaagagccgagacagcttcctgaa 569
|||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||| |
Sbjct: 46585293 gagaattaatgtgcatatggagcatttcagacactctaagagccgagacagcttcctg-a 46585351
Query: 570 acgtgtgaaggaaaacgatcagaaaaagaaggaagccaaagagaaagggacttgggttca 629
| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 46585352 atgtgtgaaggaaaatgatcagagaaagaaggaagccaaagagaaagggacttgggttct 46585411
Query: 630 gctgaagcgccagcctgctccacccagagaagctcacttcgtgagaaccaacggaaagga 689
|||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 46585412 tctgaagtgccagcctcctccactcagagaagctcacttcgtgagaaccaatggaaagga 46585471
Query: 690 gcctgaactgttggaacccattccttatgaattcatggcatgatgagtgtaaagaaaata 749
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 46585472 gcctgaactgttggaacccattccttatg-attcatggcatgataagtgtaaagaaaata 46585530
Query: 750 aaagacttaga 760
|||||| ||||
Sbjct: 46585531 aaagacctaga 46585541
Score = 234 bits (118), Expect = 8e-59
Identities = 425/523 (81%), Gaps = 17/523 (3%)
Strand = Plus / Minus
Query: 216 ggccggcaccgccatcttccagtaattcgccaaaatgacaaacacgaagggaaagaggag 275
|||| ||||| |||||||||||||||| ||||||||| | || || |||||| |||||||
Sbjct: 111408865 ggccagcacccccatcttccagtaatttgccaaaatggccaaaacaaagggagagaggag 111408806
Query: 276 gggcacccgctatatgttctctcggccttttagaaaacatggagtcgttcctttggccac 335
|| |||| || | |||||||| |||||||||||||||| ||||| ||| ||||||||||
Sbjct: 111408805 ggatacccactctgtgttctctaggccttttagaaaacacggagttgtttctttggccac 111408746
Query: 336 atacatgcgaatctacaagaaaggtgatattgtagacatcaagggaatgggcactgttca 395
||||| |||||| ||||||||||||| |||||| | |||||||||||||||||||||
Sbjct: 111408745 atacacatgaatctgtaagaaaggtgatactgtagataccaagggaatgggcactgttca 111408686
Query: 396 aaaaggaatgccccacaagtgttaccatggcaaaactggaagagtctacaatgtaaccca 455
||| || |||||| |||| |||||||||||||||||| |||||||||||| | | |||
Sbjct: 111408685 aaaggggatgccctacaaatgttaccatggcaaaactagaagagtctacagcatta-cca 111408627
Query: 456 gcatgctgttggcattgttgtaaacaaacaggttaagggcaagattcttgccaagagaat 515
||||||| || |||| | | ||| ||||| |||||||||||||||||||||||||
Sbjct: 111408626 gcatgctatttgcatggctctaaccaaac-----cagggcaagattcttgccaagagaat 111408572
Query: 516 taatgtgcgtatcgagcatatcaaacactctaagagccgagacagcttcctgaaacgtgt 575
|| |||| ||| ||| || |||||||||| || | ||||||| |||| |||
Sbjct: 111408571 caacatgcg-atcccacatctc-----ctctaagagctgaaatggcttcctaaaacatgt 111408518
Query: 576 gaaggaaaacgatcagaaaaagaaggaagccaaagagaaagggacttgggttcagctgaa 635
||||| ||| ||||||||||| || ||||||||| ||||| | ||||| |||||
Sbjct: 111408517 gaagggaaatgatcagaaaaacaaagaagccaaa---aaaggaa--gcagttcaactgaa 111408463
Query: 636 gcgccagcctgctccacccagagaagctcacttcgtgagaaccaacggaaaggagcctga 695
|| |||||||||||| |||||| |||| ||||| |||||||||| | |||||||||| |
Sbjct: 111408462 gcaccagcctgctcctcccagaaaagcacactttatgagaaccaatgcaaaggagcctaa 111408403
Query: 696 actgttggaacccattccttatgaattcatggcatgatgagtg 738
||| |||||| | |||| | ||||||||| |||||| ||||
Sbjct: 111408402 gctgctggaacactttccctttgaattcataacatgataagtg 111408360
Score = 222 bits (112), Expect = 3e-55
Identities = 151/164 (92%)
Strand = Plus / Minus
Query: 597 gaaggaagccaaagagaaagggacttgggttcagctgaagcgccagcctgctccacccag 656
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 103976475 gaaggaagccaaagagaaaggtacttctgttcagctgaagcgccagcctgctccacccag 103976416
Query: 657 agaagctcacttcgtgagaaccaacggaaaggagcctgaactgttggaacccattcctta 716
| |||||||||| ||||||||||| |||||||||||| ||||||| |||| |||||| ||
Sbjct: 103976415 aaaagctcactttgtgagaaccaatggaaaggagcctcaactgttagaactcattcccta 103976356
Query: 717 tgaattcatggcatgatgagtgtaaagaaaataaaagacttaga 760
||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 103976355 tgaattcatggcatgataagtgcaaagaaaataaaagacctaga 103976312
Score = 174 bits (88), Expect = 6e-41
Identities = 342/419 (81%), Gaps = 12/419 (2%)
Strand = Plus / Minus
Query: 262 aagggaaagaggaggggcacccgctatatgttctctcggccttttagaaaacatggagtc 321
||||||||||||||||||||| ||| | |||||||| ||||||| | |||||| |||||
Sbjct: 41596678 aagggaaagaggaggggcacctgctctgtgttctctgggcctttcaaaaaacacggagtt 41596619
Query: 322 gttcctttggccacatacatgcgaatctacaagaaaggtgatattgtagacatcaaggga 381
| ||||||| |||||||||| ||||||| |||||||||||| | || ||||||| |||
Sbjct: 41596618 atccctttgg-cacatacatgtgaatcta-aagaaaggtgatgtggttgacatcagtgga 41596561
Query: 382 atgggcactgttcaaaaag-gaatgccccacaagtgttaccatggcaaaactggaagagt 440
||||||| ||||| ||||| ||||||| ||||| | | | || |||||||||||||||
Sbjct: 41596560 atgggcagtgttccaaaagagaatgcctcacaaatatcagcacggcaaaactggaaga-- 41596503
Query: 441 ctacaatgtaacccagcatgctgttggcattgttgtaaacaaacaggttaagggcaagat 500
|| |||||| | ||||||| ||||||||||| |||| ||| | ||| |||||||
Sbjct: 41596502 ctgcaatgttagccagcatatagttggcattgt--taaaaaaa----tcaagagcaagat 41596449
Query: 501 tcttgccaagagaattaatgtgcgtatcgagcatatcaaacactctaagagccgagacag 560
|||||||||||| || | ||| | ||| ||||||| || |||||| | ||| |||| ||
Sbjct: 41596448 tcttgccaagagcatcagtgtacctattaagcatattaagcactctcaaagctgagatag 41596389
Query: 561 cttcctgaaacgtgtgaaggaaaacgatcagaaaaagaaggaagccaaagagaaagggac 620
||| ||||| ||| ||||||||| | |||||||||||| ||||||||||||||||| ||
Sbjct: 41596388 ctttctgaaccgtctgaaggaaagtggtcagaaaaagaaagaagccaaagagaaaggaac 41596329
Query: 621 ttgggttcagctgaagcgccagcctgctccacccagagaagctcacttcgtgagaacca 679
||||| | | ||||||| ||| || ||| | ||||||| || ||||| ||||||||||
Sbjct: 41596328 ttgggattaactgaagcaccaaccagct-ctgccagagaggcacactttgtgagaacca 41596271
Score = 58.0 bits (29), Expect = 1e-05
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 554 gagacagcttcctgaaacgtgtgaaggaaaacgatcagaaaaagaagga 602
||||||||||||||| || ||||||||| || |||| ||||||||||||
Sbjct: 103976788 gagacagcttcctgacacatgtgaaggacaaggatctgaaaaagaagga 103976740
>Sscrofa_Chr14
|| Length = 153851969
Score = 599 bits (302), Expect = e-168
Identities = 477/532 (89%), Gaps = 15/532 (2%)
Strand = Plus / Plus
Query: 229 atcttccagtaattcgccaaaatgacaaacacgaagggaaagaggaggggcacccgctat 288
|||||| ||||||||||||||||||| ||||| |||| |||||||||| |||| |||||
Sbjct: 59783184 atcttctagtaattcgccaaaatgaccaacacaaaggcaaagaggaggc-cacctgctat 59783242
Query: 289 atgttctctcggccttttagaaaacatggagtcgttcctttggccacatacatgcgaatc 348
||||||||| ||||||||||||||||||| || |||||||||||||||||||||| ||||
Sbjct: 59783243 atgttctctaggccttttagaaaacatgg-gttgttcctttggccacatacatgcaaatc 59783301
Query: 349 tacaagaaaggtgatattgtagacatcaagggaatgggcactgttcaaaaaggaatgccc 408
||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct: 59783302 tacaagaaatgtgatattgaagacatcaagggaatgagcactgttcaaaaaggaatg--c 59783359
Query: 409 cacaagtgttaccatggcaaaactggaagagtctacaatgtaacccagcatgctgttggc 468
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 59783360 cacaaatgttaccatggcaaaactggaagagtctacagtgtaacccagcatgctgttggc 59783419
Query: 469 attgttgtaaacaaacaggttaagggcaagattcttgccaagagaattaatgtgcgtatc 528
|| |||||||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct: 59783420 atcattgtaaacaa----gttaagggcaagattcttgccaagaggaataatgtgcgtatc 59783475
Query: 529 gagcatatcaaacactctaagagccgagacagcttcctgaaacgtgtgaaggaaaacgat 588
| | ||| || ||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 59783476 aaacctattaagcactcta-------agacagcttcctaaaacgtgtgaaggaaaacgac 59783528
Query: 589 cagaaaaagaaggaagccaaagagaaagggacttgggttcagctgaagcgccagcctgct 648
||||||| ||||||||||||| ||||||||||||| | ||||||||| | |||||||||
Sbjct: 59783529 cagaaaaggaaggaagccaaaaagaaagggacttgcatccagctgaagtgtcagcctgct 59783588
Query: 649 ccacccagagaagctcacttcgtgagaaccaacggaaaggagcctgaactgttggaaccc 708
||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 59783589 ccacccagagaagctcacttcatgagaaccaatggaaaggagcctgaatggttggaaccc 59783648
Query: 709 attccttatgaattcatggcatgatgagtgtaaagaaaataaaagacttaga 760
|||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 59783649 attccttatgaattcacggcatgataagtgtaaagaaaattaaagacctaga 59783700
Score = 83.8 bits (42), Expect = 2e-13
Identities = 124/150 (82%), Gaps = 1/150 (0%)
Strand = Plus / Minus
Query: 575 tgaaggaaaacgatcagaaaaagaaggaagccaaagagaaagggacttgggttcagctga 634
|||||||| | |||||||||||||||| ||||||||| | || |||||||||| |
Sbjct: 120134154 tgaaggaagatgatcagaaaaagaagggtcccaaagagagctgtacatgggttcagccaa 120134095
Query: 635 agcgccagcctgctccacccagagaagctcacttcgtgagaaccaacggaaaggagcctg 694
|||||||||| |||| ||||||||| |||| |||||||| ||| ||||| | |||||
Sbjct: 120134094 agcgccagcccactcccgtcagagaagcacact-cgtgagaagcaatggaaaagggcctg 120134036
Query: 695 aactgttggaacccattccttatgaattca 724
| ||| |||||||||||| |||||||||||
Sbjct: 120134035 agctgctggaacccattctttatgaattca 120134006
Score = 61.9 bits (31), Expect = 6e-07
Identities = 49/54 (90%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 844 tcttaattgaatggaagtgt--tttctcctcctccagagaaatgtttaaagcag 895
|||||||||||||||||||| | |||||||||||| |||||| ||||||||||
Sbjct: 59783716 tcttaattgaatggaagtgtggtgtctcctcctccaaagaaatatttaaagcag 59783769
>Sscrofa_ChrX
|| Length = 144288218
Score = 456 bits (230), Expect = e-125
Identities = 460/536 (85%), Gaps = 18/536 (3%)
Strand = Plus / Minus
Query: 220 ggcaccgccatcttccagtaattcgccaaaatgacaaacacgaagggaaagaggaggggc 279
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 34866502 ggcactgccatcttccagtaattcgccaaaatgaccaacacaaagggaaagaggaggggc 34866443
Query: 280 acccgctatatgttctctcggccttttagaaaacatggagtcgttcctttggccacatac 339
|| ||| |||||||||||||||||||| | ||||||||||| |||||
Sbjct: 34866442 ac-------------tctaggccttttagaaaacatggacttgttcctttggctgcatac 34866396
Query: 340 atgcgaatcta---caagaaaggtgatattgtagacatcaagggaatgggcactgttcaa 396
| | |||||| ||||||||| |||||| ||||||| |||||| ||||||||||||
Sbjct: 34866395 acacaaatctatagtaagaaaggtaatattgcagacatccagggaacaggcactgttcaa 34866336
Query: 397 aaaggaatgccccacaagtgttaccatggcaaaactggaagagtctacaatgtaacccag 456
||||||||| | ||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 34866335 aaaggaatgtcgcacaaatgtttccatggcaaaagcggaagagtctacaatgtaacccag 34866276
Query: 457 catgctgttggcattgttgtaaacaaacaggttaagggcaagattcttgccaagagaatt 516
|||||| ||||| || |||||||||||| | | ||||| ||||||||||| |||| |||
Sbjct: 34866275 catgctactggcactgctgtaaacaaacaagctgagggccagattcttgcc-agagcatt 34866217
Query: 517 aatgtgcgtatcgagcatatcaaacactctaagagccgagacagcttcctgaaacgtgtg 576
||||||| || |||||||| || ||||||||||||| || || ||||||||||| ||||
Sbjct: 34866216 aatgtgcctagtgagcatattaagcactctaagagccaaggcaacttcctgaaacatgtg 34866157
Query: 577 aaggaaaacgatcagaaaaagaaggaagccaaagagaaagggacttgggttcagctgaag 636
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 34866156 aaggaaaatgatcagaaaaagaaggaagccaaagagaaaggtacttgggttcagctcaag 34866097
Query: 637 cgccagcctgctccacccagagaagctcacttcgtgagaaccaacggaaaggagcctgaa 696
||||||||||||||| ||||||||| | | ||| || |||||| ||||||||||||||
Sbjct: 34866096 agccagcctgctccactcagagaagcacccctcgggaaaaccaagggaaaggagcctgag 34866037
Query: 697 ctgttggaacccattccttatgaattcatggcatgatgagtgtaaagaaaataaaa 752
||||||||||||| ||| |||||||| |||||| || ||||||||||||||||||
Sbjct: 34866036 ctgttggaacccaatcc-catgaattcgtggcataataagtgtaaagaaaataaaa 34865982
Score = 341 bits (172), Expect = 5e-91
Identities = 375/438 (85%), Gaps = 11/438 (2%)
Strand = Plus / Plus
Query: 286 tatatgttctctcggccttttagaaaacatggagtcgttcctttggcca--catacatgc 343
|||||||||||| | |||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 22954456 tatatgttctctagaccttttagaaaacatggagttattcctttggccatacatacatgc 22954515
Query: 344 gaatctacaagaaaggtgatattgtagacatcaagggaatgggcactgttcaaaaaggaa 403
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 22954516 aaatctacaagaaaggtgatattgtagacatcaagggaatgctcactgttcaaaaaggag 22954575
Query: 404 tgccccacaagtgttaccatggcaaaactggaagagtctacaatgtaacccagcatgctg 463
|||||| | |||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct: 22954576 cattgcacaagg---agcatggcaaaagtggaagagtctacgatgtagcccagcatgctg 22954632
Query: 464 ttggcattgttgtaaacaaacaggttaagggcaagattcttgccaagagaattaatgtgc 523
|||||| ||| ||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 22954633 ttggcactgtc----acaaacaagttaagggcaagattcttgccaagagaattaatgagc 22954688
Query: 524 gtatcgagcatatcaaacactctaagagccgagacagcttcctgaaacgtgtgaaggaaa 583
|||||||||||| || | |||| ||| || ||||||||||||||| |||||||||||
Sbjct: 22954689 atatcgagcatattaagccatctacaagctgacacagcttcctgaaacatgtgaaggaaa 22954748
Query: 584 acgatcagaaaaagaaggaagccaaagagaaagggacttgggttcagctgaagcgccagc 643
| |||||||||||| ||||||| ||| | ||| |||||||||||| ||||||||||||
Sbjct: 22954749 attatcagaaaaagagagaagccacagaaataggtacttgggttcaggtgaagcgccagc 22954808
Query: 644 ctgctcc-acccagagaagctcacttcgtgagaaccaacggaaaggagcctgaactgttg 702
||||||| |||||| |||| || || | ||||||||| ||||||||| || |||| |||
Sbjct: 22954809 ctgctcctccccagaaaagcaca-tttgggagaaccaatggaaaggagtctcaactattg 22954867
Query: 703 gaacccattccttatgaa 720
||||||| ||| ||||||
Sbjct: 22954868 gaacccactccctatgaa 22954885
>Sscrofa_Chr11
|| Length = 87690581
Score = 452 bits (228), Expect = e-124
Identities = 234/236 (99%)
Strand = Plus / Plus
Query: 2 ccgggctctctggcaagatccaagtgtccgcttgcgtgggtcgagcacctctttttctca 61
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4197561 ccgggctgtctggcaagatccaagtgtccgcttgcgtgggtcgagcacctctttttctca 4197620
Query: 62 agaaaggaaaccattctcacaggctcttctggttcctggggacgctacccgcccccagaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4197621 agaaaggaaaccattctcacaggctcttctggttcctggggacgctacccgcccccagaa 4197680
Query: 122 aagagtggctgcgggccggcgtcccctcaggcagcgccgcgggcagcccgcaggcccttg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4197681 aagagtggctgcgggccggcgtcccctcaggcagcgccgcgggcagcccgcaggcccttg 4197740
Query: 182 taaggcgcgcgcgcggccccgcctgctccttttcggccggcaccgccatcttccag 237
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4197741 taaggcgcgcgcgcggccccgcctcctccttttcggccggcaccgccatcttccag 4197796
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 492 gggcaagattcttgccaagagaattaatgtgcgtatcgagcatatcaaacactctaagag 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4201567 gggcaagattcttgccaagagaattaatgtgcgtatcgagcatatcaaacactctaagag 4201626
Query: 552 ccgagacagcttcctgaaacgtgtgaaggaaaacgatcagaaaaagaaggaagccaaaga 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4201627 ccgagacagcttcctgaaacgtgtgaaggaaaacgatcagaaaaagaaggaagccaaaga 4201686
Query: 612 gaaagggacttgggttcagctgaagcgccag 642
|||||||||||||||||||||||||||||||
Sbjct: 4201687 gaaagggacttgggttcagctgaagcgccag 4201717
Score = 268 bits (135), Expect = 6e-69
Identities = 187/204 (91%), Gaps = 4/204 (1%)
Strand = Plus / Plus
Query: 822 acttagattgtaaaaacgtttctcttaattgaatggaagtgttttctcctcctccagaga 881
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4201943 acttagattgtaaaaacgtttctcttaattgaatggaagtgttttctcctcctccaaaga 4202002
Query: 882 aatgtttaaagcaggttttgtgttcaaattcagtgggtggtgtctttactattccaagtt 941
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4202003 aatatttaaagcaggttttgtgttcaaattcagtgggtggtgtctttactattccaagtt 4202062
Query: 942 taannnnnnnnnnnnctttctgaaagtttgaaggttgttgagc-atataaaacggactcc 1000
||| ||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 4202063 taa--ttttttttttctttctgaaagtttg-aggttgttgagcaatataaaacggactcc 4202119
Query: 1001 ttggtaagtactgccaggtacttg 1024
||| ||||||||||||||||||||
Sbjct: 4202120 ttgataagtactgccaggtacttg 4202143
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 641 agcctgctccacccagagaagctcacttcgtgagaaccaacggaaaggagcctgaactgt 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4201830 agcctgctccacccagagaagctcacttcgtgagaaccaacggaaaggagcctgaactgt 4201889
Query: 701 tggaacccattccttatgaattcatggcatgatgagtgtaaagaaaataaaagacttaga 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4201890 tggaacccattccttatgaattcatggcatgatgagtgtaaagaaaataaaagacttaga 4201949
Query: 761 ttgt 764
||||
Sbjct: 4201950 ttgt 4201953
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 377 agggaatgggcactgttcaaaaaggaatgccccacaagtgttaccatggcaaaactggaa 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4200518 agggaatgggcactgttcaaaaaggaatgccccacaagtgttaccatggcaaaactggaa 4200577
Query: 437 gagtctacaatgtaacccagcatgctgttggcattgttgtaaacaaacaggttaag 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4200578 gagtctacaatgtaacccagcatgctgttggcattgttgtaaacaaacaggttaag 4200633
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 235 cagtaattcgccaaaatgacaaacacgaagggaaagaggaggggcacccgctatatgttc 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4199859 cagtaattcgccaaaatgacaaacacgaagggaaagaggaggggcacccgctatatgttc 4199918
Query: 295 tctcggccttttagaaaacatgg 317
|||||||||||||||||||||||
Sbjct: 4199919 tctcggccttttagaaaacatgg 4199941
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 316 ggagtcgttcctttggccacatacatgcgaatctacaagaaaggtgatattgtagacatc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4200088 ggagtcgttcctttggccacatacatgcgaatctacaagaaaggtgatattgtagacatc 4200147
Query: 376 aagg 379
||||
Sbjct: 4200148 aagg 4200151
>gb|GL894058.2| Sus scrofa unplaced genomic scaffold ChrUScaf1942
Length = 23428
Score = 357 bits (180), Expect = 8e-96
Identities = 231/248 (93%)
Strand = Plus / Plus
Query: 513 aattaatgtgcgtatcgagcatatcaaacactctaagagccgagacagcttcctgaaacg 572
||||||||||| |||| ||||| | ||| |||||||||||| ||||||||||||||| |
Sbjct: 342 aattaatgtgcatatcaagcatcttaaatactctaagagccaagacagcttcctgaacca 401
Query: 573 tgtgaaggaaaacgatcagaaaaagaaggaagccaaagagaaagggacttgggttcagct 632
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgtgaaggaaaacagtcagaaaaagaaggaagccaaagagaaagggacttgggttcagct 461
Query: 633 gaagcgccagcctgctccacccagagaagctcacttcgtgagaaccaacggaaaggagcc 692
||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 462 gaagcaccagcctactccacccagagaagctcactttgtgagaaccaatggaaaggagcc 521
Query: 693 tgaactgttggaacccattccttatgaattcatggcatgatgagtgtaaagaaaataaaa 752
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 522 tgaactgttggaacccattccttatgaattcatggcatggtaagtgtaaagaaaataaaa 581
Query: 753 gacttaga 760
||| ||||
Sbjct: 582 gacctaga 589
Score = 276 bits (139), Expect = 2e-71
Identities = 187/203 (92%)
Strand = Plus / Plus
Query: 210 cttttcggccggcaccgccatcttccagtaattcgccaaaatgacaaacacgaagggaaa 269
||||||||| ||||| |||||||||||||||||| |||||||||| |||| |||| |||
Sbjct: 29 cttttcggctggcactgccatcttccagtaattctccaaaatgaccgacacaaaggcaaa 88
Query: 270 gaggaggggcacccgctatatgttctctcggccttttagaaaacatggagtcgttccttt 329
|||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 89 gaggaggggcacccactatatgttctctaggccttttagaaaacatggagttgttccttt 148
Query: 330 ggccacatacatgcgaatctacaagaaaggtgatattgtagacatcaagggaatgggcac 389
||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 149 ggcatcatacatgcaaatctacaagaaaggtgatattgtagccatcaagggaatgggtac 208
Query: 390 tgttcaaaaaggaatgccccaca 412
|||||||||||||||||| ||||
Sbjct: 209 tgttcaaaaaggaatgccacaca 231
Score = 131 bits (66), Expect = 8e-28
Identities = 103/113 (91%), Gaps = 3/113 (2%)
Strand = Plus / Plus
Query: 825 tagattgtaaaaacgtttctcttaattgaatggaagtgtttt--ctcctcctccagagaa 882
|||| |||||||| |||||||||||||||||| ||||||| | ||||||||||| ||||
Sbjct: 586 tagactgtaaaaa-gtttctcttaattgaatgcaagtgttatgtctcctcctccaaagaa 644
Query: 883 atgtttaaagcaggttttgtgttcaaattcagtgggtggtgtctttactattc 935
|| |||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 645 atatttaaagcagattttgtgttcaaattcagtgggtgatgtctttactattc 697
>Sscrofa_Chr02
|| Length = 162569375
Score = 351 bits (177), Expect = 5e-94
Identities = 442/527 (83%), Gaps = 5/527 (0%)
Strand = Plus / Plus
Query: 230 tcttccagtaattcgccaaaatgacaaacacgaagggaaagaggaggggcacccgctata 289
||||||||||||| ||||||||||| ||||| |||||||||| |||||||| || |
Sbjct: 67830199 tcttccagtaatttgccaaaatgaccaacacaaagggaaagaagaggggcatattgtaca 67830258
Query: 290 tgttctctcggccttttagaaaacatggagtcgttcctttggccacatacatgcgaatct 349
||| |||| | ||||||||||||||| || | ||||||||| || |||||||| ||||||
Sbjct: 67830259 tgtcctctagtccttttagaaaacatagaattgttcctttgtcctcatacatgggaatct 67830318
Query: 350 acaagaaaggtgatattgtagacatcaagggaatgggcactgttcaaaaaggaatgcccc 409
|||||||| ||||| |||||||||||| |||| |||| |||||| ||||| ||| |||
Sbjct: 67830319 acaagaaaagtgatgctgtagacatcaacagaataggcaatgttcataaaggcatgtccc 67830378
Query: 410 acaagtgttaccatggcaaaactggaagagtctacaatgtaacccagcatgctgttggca 469
|| | |||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 67830379 actaatgttaccatggcaatcctggaagagtctacagtgtaacccagcatgctgttggca 67830438
Query: 470 ttgttgtaaacaaacaggttaagggcaagattcttgccaagagaattaatgtgcgtatcg 529
||| | |||||||| | ||||| |||||||||||| |||||||||| ||||||| |||
Sbjct: 67830439 ttgctataaacaaagaagttaatggcaagattcttaccaagagaatgaatgtgcttatga 67830498
Query: 530 agcatatcaaacactctaagagccgagacagcttcctgaaacgtgtgaaggaaaacgatc 589
| ||||| || |||||||||| || || || ||||| ||||| ||| |||||||||
Sbjct: 67830499 aacatattaagcactctaagaacccaggcaccttcccgaaacatgtaaaggaaaac---a 67830555
Query: 590 agaaaaagaaggaagccaaagagaaagggacttgggttcagctgaagcgccagcct-gct 648
|||| || |||||||||||||||||| || |||| ||||| ||| | ||||||| |
Sbjct: 67830556 agaagaaaaaggaagccaaagagaaa-ggtcttgatttcagtagaaactccagcctcttt 67830614
Query: 649 ccacccagagaagctcacttcgtgagaaccaacggaaaggagcctgaactgttggaaccc 708
|||||||||||||| ||| |||||| ||| |||||||||||||| ||||||||||||
Sbjct: 67830615 ccacccagagaagcattctttgtgagacccagtggaaaggagcctgagctgttggaaccc 67830674
Query: 709 attccttatgaattcatggcatgatgagtgtaaagaaaataaaagac 755
||| | ||||||| ||||| |||| |||||||||||||||||||||
Sbjct: 67830675 atttcctatgaatccatggtgtgataagtgtaaagaaaataaaagac 67830721
Score = 264 bits (133), Expect = 9e-68
Identities = 394/479 (82%), Gaps = 4/479 (0%)
Strand = Plus / Minus
Query: 256 aacacgaagggaaagaggaggggcacccgctatatgttctctcggccttttagaaaacat 315
||||| ||||||||||| |||| |||| || ||||||| | ||||||||||||| |||
Sbjct: 68425445 aacacaaagggaaagagaagggacaccagccgcatgttctataggccttttagaaaccat 68425386
Query: 316 ggagtcgttcctttggccacatacatgcgaatctacaagaaaggtgatattgtagacatc 375
||||| ||||||||| || || |||| || ||||||| ||||||||| ||| ||||||
Sbjct: 68425385 ggagttgttcctttgtccccacgcatgggacactacaagcaaggtgatactgtggacatc 68425326
Query: 376 aagggaatgggcactgttcaaaaaggaatgccccacaagtgttaccatggcaaaactgga 435
||||||||||||||| | | | |||||| || ||| |||| |||||||| |||||
Sbjct: 68425325 cagggaatgggcactgcttatataggaatacctcacccatgttgtcatggcaatcctgga 68425266
Query: 436 agagtctacaatgtaacccagcatgctgttggcattgttgtaaacaaacaggttaagggc 495
||||||||||||||| |||||||||||| ||||||||||||||||||| || ||||||||
Sbjct: 68425265 agagtctacaatgtagcccagcatgctgctggcattgttgtaaacaaagagcttaagggc 68425206
Query: 496 aagattcttgccaagagaattaatgtgcgtatcgagcatatcaaacactctaagagccga 555
| |||||||||||||||||| ||||||| ||| |||||| | || ||||||||||||| |
Sbjct: 68425205 acgattcttgccaagagaatgaatgtgcttatggagcatgttaagcactctaagagccca 68425146
Query: 556 gacagcttcctgaaacgtgtgaaggaaaacgatcagaaaaagaaggaagccaaagagaaa 615
|| ||||||||||| ||| ||||||||| ||| ||||||||||||||| |||||
Sbjct: 68425145 gaaggcttcctgaaaaatgtaaaggaaaac---aagataaagaaggaagccaatgagaag 68425089
Query: 616 gggacttgggttcagctgaagcgccagcct-gctccacccagagaagctcacttcgtgag 674
|| |||||||||| ||| | | ||||| || ||||||||||||| | || ||||
Sbjct: 68425088 ggtccttgggttcatttgagtccctagcctctcttcacccagagaagcaccctctctgag 68425029
Query: 675 aaccaacggaaaggagcctgaactgttggaacccattccttatgaattcatggcatgat 733
||| || | |||||| | ||| ||||||||||||||||| | |||| ||||| ||||||
Sbjct: 68425028 aactaatgtaaaggaacttgagctgttggaacccattccctgtgaagtcatgacatgat 68424970
>gb|GL894506.2| Sus scrofa unplaced genomic scaffold ChrUScaf2390
Length = 1107
Score = 301 bits (152), Expect = 4e-79
Identities = 190/204 (93%), Gaps = 2/204 (0%)
Strand = Plus / Plus
Query: 822 acttagattgtaaaaacgtttctcttaattgaatggaagtgttttctcctcctccagaga 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 acttagattgtaaaaacgtttctcttaattgaatggaagtgttttctcctcctccagaga 818
Query: 882 aatgtttaaagcaggttttgtgttcaaattcagtgggtggtgtctttactattccaagtt 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 aatgtttaaagcaggttttgtgttcaaattcagtgggtggtgtctttactattccaagtt 878
Query: 942 taannnnnnnnnnnnctttctgaaagtttgaaggttgttgagc-atataaaacggactcc 1000
||| ||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 879 taattttttttttttctttctgaaagtttg-aggttgttgagcaatataaaacggactcc 937
Query: 1001 ttggtaagtactgccaggtacttg 1024
||||||||||||||||||||||||
Sbjct: 938 ttggtaagtactgccaggtacttg 961
Score = 65.9 bits (33), Expect = 4e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 732 atgagtgtaaagaaaataaaagacttagattgt 764
|||||||||||||||||||||||||||||||||
Sbjct: 737 atgagtgtaaagaaaataaaagacttagattgt 769
>gb|GL895853.2| Sus scrofa unplaced genomic scaffold ChrUScaf3737
Length = 102776
Score = 283 bits (143), Expect = 9e-74
Identities = 262/301 (87%), Gaps = 8/301 (2%)
Strand = Plus / Minus
Query: 300 gccttttagaaaacatggagtcgttcctttggccacatacatgcgaatctacaagaaagg 359
||||||||||||||||||||| ||| |||||||||||| |||| ||||||||||||||||
Sbjct: 14967 gccttttagaaaacatggagttgttgctttggccacatccatgtgaatctacaagaaagg 14908
Query: 360 tgatattgtagacatcaagggaatgggcactgttcaaaaaggaatgccccacaagtgtta 419
|||||||||||||||||| |||||| ||||| ||||||||||||||||||||| ||||
Sbjct: 14907 tgatattgtagacatcaaaggaatgagcactcttcaaaaaggaatgccccacacatgttc 14848
Query: 420 ccatggcaaaactggaagagtctacaatgtaacccagcatgctgttggcattgttgtaaa 479
| ||||||||||| |||||||| |||| | ||||| |||||||||||||||||||||
Sbjct: 14847 ctgtggcaaaactgaaagagtct---atgttagccagcctgctgttggcattgttgtaaa 14791
Query: 480 caaacaggttaagggcaagattcttgccaagagaattaatgtgcgtatcgagcatatcaa 539
|||| ||||||||||||||||| |||||||||||||| |||| || |||| ||
Sbjct: 14790 taaac-----aagggcaagattcttgcaaagagaattaatgtatgtattgaacatagtaa 14736
Query: 540 acactctaagagccgagacagcttcctgaaacgtgtgaaggaaaacgatcagaaaaagaa 599
||||||||||||| ||| ||||| ||||||| ||||||| |||| ||||||||||||||
Sbjct: 14735 gcactctaagagccaagatagctttctgaaacatgtgaagaaaaatgatcagaaaaagaa 14676
Query: 600 g 600
|
Sbjct: 14675 g 14675
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,991,478
Number of extensions: 363
Number of successful extensions: 363
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 79
Length of query: 1024
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1003
Effective length of database: 2,808,413,156
Effective search space: 2816838395468
Effective search space used: 2816838395468
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)