Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000535
(648 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035671.1| 40S ribosomal protein S21 [Bos taurus]. 167 5e-42
Alignment gi|XP_002691461.1| PREDICTED: ribosomal protein S21-like [Bos t... 153 1e-37
Alignment gi|XP_603035.1| PREDICTED: ribosomal protein S21-like [Bos taur... 153 1e-37
Alignment gi|XP_002700380.1| PREDICTED: alpha isoform of regulatory subun... 82 4e-16
Alignment gi|XP_873880.4| PREDICTED: alpha isoform of regulatory subunit ... 82 4e-16
>ref|NP_001035671.1| 40S ribosomal protein S21 [Bos taurus].
Length = 83
Score = 167 bits (424), Expect = 5e-42
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +3
Query: 81 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 260
MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 261 RMGESDDSILRLAKADGIVSKNF 329
RMGESDDSILRLAKADGIVSKNF
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
>ref|XP_002691461.1| PREDICTED: ribosomal protein S21-like [Bos taurus].
Length = 92
Score = 153 bits (387), Expect = 1e-37
Identities = 74/88 (84%), Positives = 82/88 (93%)
Frame = +3
Query: 66 RRAFNMQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAI 245
R + N+QND+GEFVD YVP+KCSASNR IGAKDHASIQMNVAEVDKVTGRFN QFKTYAI
Sbjct: 5 RHSLNIQNDSGEFVDPYVPQKCSASNRFIGAKDHASIQMNVAEVDKVTGRFNRQFKTYAI 64
Query: 246 CGAIRRMGESDDSILRLAKADGIVSKNF 329
CGA+RRMGESDDSIL LAKA+GI+S+NF
Sbjct: 65 CGAVRRMGESDDSILWLAKANGIISENF 92
>ref|XP_603035.1| PREDICTED: ribosomal protein S21-like [Bos taurus].
Length = 92
Score = 153 bits (387), Expect = 1e-37
Identities = 74/88 (84%), Positives = 82/88 (93%)
Frame = +3
Query: 66 RRAFNMQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAI 245
R + N+QND+GEFVD YVP+KCSASNR IGAKDHASIQMNVAEVDKVTGRFN QFKTYAI
Sbjct: 5 RHSLNIQNDSGEFVDPYVPQKCSASNRFIGAKDHASIQMNVAEVDKVTGRFNRQFKTYAI 64
Query: 246 CGAIRRMGESDDSILRLAKADGIVSKNF 329
CGA+RRMGESDDSIL LAKA+GI+S+NF
Sbjct: 65 CGAVRRMGESDDSILWLAKANGIISENF 92
>ref|XP_002700380.1| PREDICTED: alpha isoform of regulatory subunit A, protein
phosphatase 2-like [Bos taurus].
Length = 782
Score = 82.0 bits (201), Expect = 4e-16
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = +3
Query: 72 AFNMQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICG 251
+ N+QN F+DLY+P+K S+ N II K+HA IQMNVA+VDKVT RFNGQFKTY+I
Sbjct: 719 SLNIQNH--NFMDLYMPQKFSSGNPIISTKNHAPIQMNVAKVDKVTVRFNGQFKTYSIYW 776
Query: 252 AIRRMG 269
AI RMG
Sbjct: 777 AIHRMG 782
>ref|XP_873880.4| PREDICTED: alpha isoform of regulatory subunit A, protein
phosphatase 2-like [Bos taurus].
Length = 782
Score = 82.0 bits (201), Expect = 4e-16
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = +3
Query: 72 AFNMQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICG 251
+ N+QN F+DLY+P+K S+ N II K+HA IQMNVA+VDKVT RFNGQFKTY+I
Sbjct: 719 SLNIQNH--NFMDLYMPQKFSSGNPIISTKNHAPIQMNVAKVDKVTVRFNGQFKTYSIYW 776
Query: 252 AIRRMG 269
AI RMG
Sbjct: 777 AIHRMG 782
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 18,934,244
Number of extensions: 497992
Number of successful extensions: 1254
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1251
Number of HSP's successfully gapped: 5
Length of query: 216
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 118
Effective length of database: 14,438,750
Effective search space: 1703772500
Effective search space used: 1703772500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000535
(648 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543084.2| PREDICTED: similar to ribosomal protein S21 iso... 167 6e-42
Alignment gi|XP_852526.1| PREDICTED: similar to ribosomal protein S21 [Ca... 166 2e-41
Alignment gi|XP_867628.1| PREDICTED: similar to ribosomal protein S21 iso... 128 4e-30
Alignment gi|XP_852386.1| PREDICTED: similar to ribosomal protein S21 [Ca... 83 2e-16
>ref|XP_543084.2| PREDICTED: similar to ribosomal protein S21 isoform 1 [Canis
familiaris].
Length = 83
Score = 167 bits (424), Expect = 6e-42
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +3
Query: 81 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 260
MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 261 RMGESDDSILRLAKADGIVSKNF 329
RMGESDDSILRLAKADGIVSKNF
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
>ref|XP_852526.1| PREDICTED: similar to ribosomal protein S21 [Canis familiaris].
Length = 115
Score = 166 bits (420), Expect = 2e-41
Identities = 82/94 (87%), Positives = 87/94 (92%)
Frame = +3
Query: 48 AHRGDTRRAFNMQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQ 227
A G +R A +MQNDAG+FVDLYVPRKCSASNRIIG KDHASIQMNVAE+DKVTGRFNGQ
Sbjct: 22 ARGGSSRCALDMQNDAGKFVDLYVPRKCSASNRIIGTKDHASIQMNVAELDKVTGRFNGQ 81
Query: 228 FKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 329
FKTYAICGAIRRMGESDDSIL LAKADGI+SKNF
Sbjct: 82 FKTYAICGAIRRMGESDDSILWLAKADGIISKNF 115
>ref|XP_867628.1| PREDICTED: similar to ribosomal protein S21 isoform 2 [Canis
familiaris].
Length = 94
Score = 128 bits (322), Expect = 4e-30
Identities = 62/62 (100%), Positives = 62/62 (100%)
Frame = +3
Query: 81 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 260
MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 261 RM 266
RM
Sbjct: 61 RM 62
>ref|XP_852386.1| PREDICTED: similar to ribosomal protein S21 [Canis familiaris].
Length = 41
Score = 83.2 bits (204), Expect = 2e-16
Identities = 40/41 (97%), Positives = 40/41 (97%)
Frame = +3
Query: 81 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDK 203
MQNDA EFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDK
Sbjct: 1 MQNDASEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDK 41
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 19,309,193
Number of extensions: 436566
Number of successful extensions: 1338
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1337
Number of HSP's successfully gapped: 4
Length of query: 216
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 117
Effective length of database: 15,574,240
Effective search space: 1822186080
Effective search space used: 1822186080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000535
(648 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015.1| 40S ribosomal protein S21 [Homo sapiens]. 167 5e-42
>ref|NP_001015.1| 40S ribosomal protein S21 [Homo sapiens].
Length = 83
Score = 167 bits (424), Expect = 5e-42
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +3
Query: 81 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 260
MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 261 RMGESDDSILRLAKADGIVSKNF 329
RMGESDDSILRLAKADGIVSKNF
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 18,943,311
Number of extensions: 420870
Number of successful extensions: 1342
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1341
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 118
Effective length of database: 15,066,692
Effective search space: 1777869656
Effective search space used: 1777869656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000535
(648 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079863.1| 40S ribosomal protein S21 [Mus musculus]. 161 4e-40
Alignment gi|XP_001002128.1| PREDICTED: 40S ribosomal protein S21-like [M... 136 1e-32
Alignment gi|XP_920351.1| PREDICTED: 40S ribosomal protein S21-like [Mus ... 136 1e-32
>ref|NP_079863.1| 40S ribosomal protein S21 [Mus musculus].
Length = 83
Score = 161 bits (407), Expect = 4e-40
Identities = 79/83 (95%), Positives = 80/83 (96%)
Frame = +3
Query: 81 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 260
MQNDAGEFVDLYVPRKCSASNRII AKDHASIQMNVAEVD+ TGRFNGQFKTY ICGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIAAKDHASIQMNVAEVDRTTGRFNGQFKTYGICGAIR 60
Query: 261 RMGESDDSILRLAKADGIVSKNF 329
RMGESDDSILRLAKADGIVSKNF
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
>ref|XP_001002128.1| PREDICTED: 40S ribosomal protein S21-like [Mus musculus].
Length = 79
Score = 136 bits (343), Expect = 1e-32
Identities = 70/83 (84%), Positives = 73/83 (87%)
Frame = +3
Query: 81 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 260
MQN+ GEFVDLYVPRKCSASNRII AKDH SIQMNVA+VD+ T GQFKTY IC AIR
Sbjct: 1 MQNNTGEFVDLYVPRKCSASNRIIAAKDHLSIQMNVAKVDRTT----GQFKTYGICRAIR 56
Query: 261 RMGESDDSILRLAKADGIVSKNF 329
RMGESDDSILRLAKADGIVSKNF
Sbjct: 57 RMGESDDSILRLAKADGIVSKNF 79
>ref|XP_920351.1| PREDICTED: 40S ribosomal protein S21-like [Mus musculus].
Length = 79
Score = 136 bits (343), Expect = 1e-32
Identities = 70/83 (84%), Positives = 73/83 (87%)
Frame = +3
Query: 81 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 260
MQN+ GEFVDLYVPRKCSASNRII AKDH SIQMNVA+VD+ T GQFKTY IC AIR
Sbjct: 1 MQNNTGEFVDLYVPRKCSASNRIIAAKDHLSIQMNVAKVDRTT----GQFKTYGICRAIR 56
Query: 261 RMGESDDSILRLAKADGIVSKNF 329
RMGESDDSILRLAKADGIVSKNF
Sbjct: 57 RMGESDDSILRLAKADGIVSKNF 79
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 16,079,975
Number of extensions: 356582
Number of successful extensions: 1082
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1079
Number of HSP's successfully gapped: 3
Length of query: 216
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 119
Effective length of database: 12,704,067
Effective search space: 1511783973
Effective search space used: 1511783973
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000535
(648 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090949.1| 40S ribosomal protein S21 [Sus scrofa]. 167 3e-42
Alignment gi|XP_001928169.2| PREDICTED: 40S ribosomal protein S21-like [S... 167 3e-42
Alignment gi|XP_003128784.1| PREDICTED: 40S ribosomal protein S21-like is... 167 3e-42
Alignment gi|XP_003128786.1| PREDICTED: 40S ribosomal protein S21-like [S... 164 3e-41
>ref|NP_001090949.1| 40S ribosomal protein S21 [Sus scrofa].
Length = 83
Score = 167 bits (424), Expect = 3e-42
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +3
Query: 81 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 260
MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 261 RMGESDDSILRLAKADGIVSKNF 329
RMGESDDSILRLAKADGIVSKNF
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
>ref|XP_001928169.2| PREDICTED: 40S ribosomal protein S21-like [Sus scrofa].
Length = 83
Score = 167 bits (424), Expect = 3e-42
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +3
Query: 81 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 260
MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 261 RMGESDDSILRLAKADGIVSKNF 329
RMGESDDSILRLAKADGIVSKNF
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
>ref|XP_003128784.1| PREDICTED: 40S ribosomal protein S21-like isoform 1 [Sus scrofa].
Length = 83
Score = 167 bits (424), Expect = 3e-42
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +3
Query: 81 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 260
MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 261 RMGESDDSILRLAKADGIVSKNF 329
RMGESDDSILRLAKADGIVSKNF
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
>ref|XP_003128786.1| PREDICTED: 40S ribosomal protein S21-like [Sus scrofa].
Length = 83
Score = 164 bits (416), Expect = 3e-41
Identities = 82/83 (98%), Positives = 82/83 (98%)
Frame = +3
Query: 81 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 260
MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAI
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIC 60
Query: 261 RMGESDDSILRLAKADGIVSKNF 329
RMGESDDSILRLAKADGIVSKNF
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 12,916,923
Number of extensions: 436454
Number of successful extensions: 804
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 804
Number of HSP's successfully gapped: 4
Length of query: 216
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 121
Effective length of database: 8,978,717
Effective search space: 1086424757
Effective search space used: 1086424757
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000535
(648 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 680 0.0
Sscrofa_Chr04 218 3e-54
Sscrofa_Chr17 149 2e-33
>Sscrofa_Chr07
|| Length = 134764511
Score = 680 bits (343), Expect = 0.0
Identities = 349/351 (99%)
Strand = Plus / Minus
Query: 34 ctttctgcgctcgcgctcatcgtggtgacacaaggcgtgccttcaacatgcagaacgacg 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129322462 ctttctgcgctcgcgctcatcgtggtgacacaaggcgtgccttcaacatgcagaacgacg 129322403
Query: 94 cgggcgagttcgtggacctatacgtgcctcgaaaatgctccgccagcaaccgcatcatcg 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129322402 cgggcgagttcgtggacctatacgtgcctcgaaaatgctccgccagcaaccgcatcatcg 129322343
Query: 154 gcgccaaggaccacgcgtccatccagatgaacgtggccgaggttgacaaggtgacaggca 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129322342 gcgccaaggaccacgcgtccatccagatgaacgtggccgaggttgacaaggtgacaggca 129322283
Query: 214 ggttcaacggccagtttaaaacctacgccatctgtggtgccattcgcaggatgggagagt 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129322282 ggttcaacggccagtttaaaacctacgccatctgtggtgccattcgcaggatgggagagt 129322223
Query: 274 cagacgactccattctccggctggccaaggccgacggcattgtctcaaagaacttctgac 333
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 129322222 cagacgactccattctccggctggccaaggccgacggcatcgtctcaaagaacttctgac 129322163
Query: 334 tggcgaggctcacacatgtggaatgtttgtcataaataaatagtgcaagtc 384
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129322162 tggtgaggctcacacatgtggaatgtttgtcataaataaatagtgcaagtc 129322112
>Sscrofa_Chr04
|| Length = 143465943
Score = 218 bits (110), Expect = 3e-54
Identities = 272/323 (84%), Gaps = 11/323 (3%)
Strand = Plus / Plus
Query: 56 tggtgacacaaggcgtgccttcaacatgcagaacgacgcgggcgagttcgtggacctata 115
||||||||||||||| || |||||||||||||||||||||| ||||||||||||| ||
Sbjct: 118926327 tggtgacacaaggcgcaccctcaacatgcagaacgacgcgggtgagttcgtggaccggta 118926386
Query: 116 cgtgcctcgaaaatgctccgccagcaaccgcatcatcggcgccaaggaccacgcgtccat 175
| ||||| | ||||||||| | || ||| |||| |||||||||||| |||||||
Sbjct: 118926387 cctgccttggaaatgctcc---attaatggcaccatcct-gccaaggaccacacgtccat 118926442
Query: 176 ccagatgaacgtggccgaggttgacaaggtgacaggcaggttcaacggccagtttaaaac 235
|||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 118926443 ccagatgaacatggccgaggttgacaaggtgacacgcaggttcaaccgccagtttaaaac 118926502
Query: 236 ctacgccatctgtggtgccattcgcaggatgggagagtcagacgactccattctccggct 295
|||||||| | |||||||||||||||| |||||||| ||| || || | ||||
Sbjct: 118926503 ctacgccagc----cccccattcgcaggatgggggagtcagatgacctcactcccgggct 118926558
Query: 296 ggccaaggccgacggcattgtctcaaagaacttctgactggcgaggctcacacatgtgga 355
||||||||| |||||||| |||||||||| |||| ||| |||| ||||| || ||||
Sbjct: 118926559 ggccaaggctgacggcatcatctcaaagaa---ctgattggggaggatcacagatatgga 118926615
Query: 356 atgtttgtcataaataaatagtg 378
| |||||||||||||||||||||
Sbjct: 118926616 acgtttgtcataaataaatagtg 118926638
Score = 77.8 bits (39), Expect = 7e-12
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 126 aaatgctccgccagcaaccgcatcatcggcgccaaggaccacgcgtccatccagatgaac 185
||||||||| ||||||||| |||| | ||| ||||||||||||| ||||||||||| |||
Sbjct: 85851226 aaatgctccaccagcaaccacatcgttggcaccaaggaccacgcatccatccagataaac 85851167
Query: 186 gtggccgaggttgacaaggtgac 208
||| | ||| ||||||||||||
Sbjct: 85851166 atgggcaaggctgacaaggtgac 85851144
>Sscrofa_Chr17
|| Length = 69701581
Score = 149 bits (75), Expect = 2e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 193 aggttgacaaggtgacaggcaggttcaacggccagtttaaaacctacgccatctgtggtg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69173286 aggttgacaaggtgacaggcaggttcaacggccagtttaaaacctacgccatctgtggtg 69173345
Query: 253 ccattcgcaggatgg 267
|||||||||||||||
Sbjct: 69173346 ccattcgcaggatgg 69173360
Score = 133 bits (67), Expect = 1e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 130 gctccgccagcaaccgcatcatcggcgccaaggaccacgcgtccatccagatgaacgtgg 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69173087 gctccgccagcaaccgcatcatcggcgccaaggaccacgcgtccatccagatgaacgtgg 69173146
Query: 190 ccgaggt 196
|||||||
Sbjct: 69173147 ccgaggt 69173153
Score = 129 bits (65), Expect = 2e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 66 aggcgtgccttcaacatgcagaacgacgcgggcgagttcgtggacctatacgtgcctcga 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69172940 aggcgtgccttcaacatgcagaacgacgcgggcgagttcgtggacctatacgtgcctcga 69172999
Query: 126 aaatg 130
|||||
Sbjct: 69173000 aaatg 69173004
Score = 125 bits (63), Expect = 3e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 323 gaacttctgactggcgaggctcacacatgtggaatgtttgtcataaataaatagtgcaag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69173852 gaacttctgactggcgaggctcacacatgtggaatgtttgtcataaataaatagtgcaag 69173911
Query: 383 tcc 385
|||
Sbjct: 69173912 tcc 69173914
Score = 115 bits (58), Expect = 3e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 266 gggagagtcagacgactccattctccggctggccaaggccgacggcattgtctcaaag 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69173712 gggagagtcagacgactccattctccggctggccaaggccgacggcattgtctcaaag 69173769
Score = 109 bits (55), Expect = 2e-21
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 2 gccagcagtgctgccgggggaaccggccctggctttctgcgctcgcgctcatcgtggtga 61
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 69172661 gccagtagtgctgccgggggaaccggcccttcctttctgcgctcgcgctcatcgtggtga 69172720
Query: 62 cacaagg 68
|||||||
Sbjct: 69172721 cacaagg 69172727
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 9,411,241
Number of extensions: 121
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 11
Length of query: 648
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 627
Effective length of database: 2,808,413,156
Effective search space: 1760875048812
Effective search space used: 1760875048812
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)