Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000562
(1953 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070264.1| amyloid beta A4 protein [Bos taurus]. 909 0.0
Alignment gi|XP_002699281.1| PREDICTED: amyloid beta (A4) precursor-like ... 355 1e-97
Alignment gi|XP_001251235.1| PREDICTED: amyloid beta (A4) precursor-like ... 355 1e-97
Alignment gi|NP_001033184.1| amyloid-like protein 1 [Bos taurus]. 245 9e-65
>ref|NP_001070264.1| amyloid beta A4 protein [Bos taurus].
Length = 695
Score = 909 bits (2349), Expect = 0.0
Identities = 463/558 (82%), Positives = 466/558 (83%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVD 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADGSEDKV+
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGSEDKVIEVAEEEEVADVEEEEADDEEDDEDGEELEEE 257
Query: 363 XXXPYEEATERXXXXXXXXXXXXXXXXXXXRVPTTAASTPDAVDKYLETPGDENEHAHFQ 542
PYEEATER RVPTTAASTPDAVDKYLETPGDENEHAHFQ
Sbjct: 258 AEEPYEEATERTTSIATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQ 317
Query: 543 KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ 722
KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ
Sbjct: 318 KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ 377
Query: 723 LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 902
LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF
Sbjct: 378 LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 437
Query: 903 EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY 1082
EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY
Sbjct: 438 EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY 497
Query: 1083 SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHPFGVDSVPAN 1262
SDDVLAN+ISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHPFGVDSVPAN
Sbjct: 498 SDDVLANIISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHPFGVDSVPAN 557
Query: 1263 TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA 1442
TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA
Sbjct: 558 TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA 617
Query: 1443 EDVGSNKGAIIGLXXXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKM 1622
EDVGSNKGAIIGL KKKQYTSIHHGVVEVDAAVTPEERHLSKM
Sbjct: 618 EDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKM 677
Query: 1623 QQNGYENPTYKFFEQMQN 1676
QQNGYENPTYKFFEQMQN
Sbjct: 678 QQNGYENPTYKFFEQMQN 695
>ref|XP_002699281.1| PREDICTED: amyloid beta (A4) precursor-like protein 2 [Bos taurus].
Length = 767
Score = 355 bits (910), Expect = 1e-97
Identities = 208/425 (48%), Positives = 268/425 (63%), Gaps = 19/425 (4%)
Frame = +3
Query: 456 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 635
+P T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKNL
Sbjct: 368 IPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNL 426
Query: 636 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 815
PKA+++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 427 PKAERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRVALENYLAALQSD 486
Query: 816 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 995
PPRP + L++YVRAE KDR HTL+H++HV VDP+KAAQ+RSQVMTHL VI ER NQ
Sbjct: 487 PPRPHRILQALRRYVRAENKDRLHTLRHYQHVLAVDPEKAAQMRSQVMTHLHVIEERRNQ 546
Query: 996 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 1175
SLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S +ET
Sbjct: 547 SLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFSSSFSETPVD 589
Query: 1176 VELLPVNGEFSLDDLQPWHPFGVDSVPANTENE-VEPVDARPAADRGLTTRPGSGLTNIK 1352
V V+ E S D++ P+H + P+ ENE +P P GL +
Sbjct: 590 VR---VSSEES-DEIPPFH--SLHPFPSLPENEDSQPELFHPMKKGSALGEQDGGLIGAE 643
Query: 1353 TEEI-SEVKMDAEFRHDSGYEVHHQKLVFFAEDVGS-----------------NKGAIIG 1478
+ I S+ K+D D +V ++++F AE VG + A+IG
Sbjct: 644 EKVINSKKKVDENMVIDETLDV--KEMIFNAERVGGLEEEPESVGPLREDFSLSSSALIG 701
Query: 1479 LXXXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKF 1658
L +++QY SI HG+VEVD +TPEERHLSKMQ +GYENPTYK+
Sbjct: 702 LLVVAVAIATIIVISLVMLRRRQYGSISHGIVEVDPMLTPEERHLSKMQNHGYENPTYKY 761
Query: 1659 FEQMQ 1673
EQMQ
Sbjct: 762 LEQMQ 766
Score = 70.5 bits (171), Expect = 5e-12
Identities = 27/51 (52%), Positives = 33/51 (64%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
+E VCE H WHTV E C + L+ Y MLLPCG+D+F G E+VCCP
Sbjct: 154 KERMEVCENHQRWHTVVKEACLTQEMTLYSYSMLLPCGVDQFHGTEYVCCP 204
>ref|XP_001251235.1| PREDICTED: amyloid beta (A4) precursor-like protein 2 [Bos taurus].
Length = 767
Score = 355 bits (910), Expect = 1e-97
Identities = 208/425 (48%), Positives = 268/425 (63%), Gaps = 19/425 (4%)
Frame = +3
Query: 456 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 635
+P T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKNL
Sbjct: 368 IPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNL 426
Query: 636 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 815
PKA+++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 427 PKAERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRVALENYLAALQSD 486
Query: 816 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 995
PPRP + L++YVRAE KDR HTL+H++HV VDP+KAAQ+RSQVMTHL VI ER NQ
Sbjct: 487 PPRPHRILQALRRYVRAENKDRLHTLRHYQHVLAVDPEKAAQMRSQVMTHLHVIEERRNQ 546
Query: 996 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 1175
SLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S +ET
Sbjct: 547 SLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFSSSFSETPVD 589
Query: 1176 VELLPVNGEFSLDDLQPWHPFGVDSVPANTENE-VEPVDARPAADRGLTTRPGSGLTNIK 1352
V V+ E S D++ P+H + P+ ENE +P P GL +
Sbjct: 590 VR---VSSEES-DEIPPFH--SLHPFPSLPENEDSQPELFHPMKKGSALGEQDGGLIGAE 643
Query: 1353 TEEI-SEVKMDAEFRHDSGYEVHHQKLVFFAEDVGS-----------------NKGAIIG 1478
+ I S+ K+D D +V ++++F AE VG + A+IG
Sbjct: 644 EKVINSKKKVDENMVIDETLDV--KEMIFNAERVGGLEEEPESVGPLREDFSLSSSALIG 701
Query: 1479 LXXXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKF 1658
L +++QY SI HG+VEVD +TPEERHLSKMQ +GYENPTYK+
Sbjct: 702 LLVVAVAIATIIVISLVMLRRRQYGSISHGIVEVDPMLTPEERHLSKMQNHGYENPTYKY 761
Query: 1659 FEQMQ 1673
EQMQ
Sbjct: 762 LEQMQ 766
Score = 70.5 bits (171), Expect = 5e-12
Identities = 27/51 (52%), Positives = 33/51 (64%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
+E VCE H WHTV E C + L+ Y MLLPCG+D+F G E+VCCP
Sbjct: 154 KERMEVCENHQRWHTVVKEACLTQEMTLYSYSMLLPCGVDQFHGTEYVCCP 204
>ref|NP_001033184.1| amyloid-like protein 1 [Bos taurus].
Length = 642
Score = 245 bits (626), Expect = 9e-65
Identities = 156/424 (36%), Positives = 226/424 (53%), Gaps = 19/424 (4%)
Frame = +3
Query: 453 RVPTTAASTP-------------DAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQV 593
RVP +++ TP D VD Y PG+ +EH F +AK LE + ++++V
Sbjct: 264 RVPPSSSQTPAGVSKVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEV 323
Query: 594 MREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRR 773
MREW A+ Q+KNLPKAD++A+ +HFQ +++LE++ + ERQ+LVETH RV A++ND+R
Sbjct: 324 MREWAMADNQSKNLPKADRQALNEHFQSILQTLEEQVSGERQRLVETHATRVIALINDQR 383
Query: 774 RLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQ 953
R ALE ++ ALQ PP+P V L++Y+RAEQK+++HTL+H++HV VDP+KA Q+R Q
Sbjct: 384 RAALEGFLAALQGDPPQPERVLLALRRYLRAEQKEQRHTLRHYQHVAAVDPEKAQQMRFQ 443
Query: 954 VMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYG 1133
V THL+VI ERMNQSL LL P +A+E++ ++ ELL E
Sbjct: 444 VQTHLQVIEERMNQSLGLLDQNPRLAQELRPQIQELLHSEH------------------- 484
Query: 1134 NDALMPSLTETKTTVELLPVNGEFSLD--DLQPWHPFGVDSVPANTENEVEPVDARPAAD 1307
L P+ E P +G S D LQP P G + E +
Sbjct: 485 ---LGPNELEA-------PASGGSSEDKSGLQPLDPKGDTPMALPKEQDA---------- 524
Query: 1308 RGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHH---QKLVFFAEDVGSNKGAIIG 1478
SG + E E K++ G+ H Q+ G ++ A+ G
Sbjct: 525 ------TSSGKDKMTPLEQYERKVNMSI--PRGFPFHSSEIQRDELAPAGTGVSREAVSG 576
Query: 1479 -LXXXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYK 1655
L +KK Y +I HGVVEVD +T EE+ L ++Q++GYENPTY+
Sbjct: 577 LLIMGAGGGSLIVLSLLLLRRKKPYGAISHGVVEVDPMLTLEEQQLRELQRHGYENPTYR 636
Query: 1656 FFEQ 1667
F E+
Sbjct: 637 FLEE 640
Score = 60.5 bits (145), Expect = 5e-09
Identities = 27/51 (52%), Positives = 32/51 (62%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
QE + CE+ A E CS + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 155 QERMDQCESSARRQQEAQEACSSQGLILHGSGMLLPCGADRFRGVEYVCCP 205
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,492,950
Number of extensions: 1810953
Number of successful extensions: 6580
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6483
Number of HSP's successfully gapped: 8
Length of query: 651
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 542
Effective length of database: 14,074,782
Effective search space: 7628531844
Effective search space used: 7628531844
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000562
(1953 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001006601.1| amyloid beta A4 protein [Canis lupus familia... 771 0.0
Alignment gi|XP_856822.1| PREDICTED: similar to amyloid beta (A4) precurs... 358 8e-99
Alignment gi|XP_856660.1| PREDICTED: similar to amyloid beta (A4) precurs... 358 1e-98
Alignment gi|XP_856576.1| PREDICTED: similar to amyloid beta (A4) precurs... 358 1e-98
Alignment gi|XP_856537.1| PREDICTED: similar to Amyloid-like protein 2 pr... 358 1e-98
Alignment gi|XP_856859.1| PREDICTED: similar to Amyloid-like protein 2 pr... 357 2e-98
Alignment gi|XP_856781.1| PREDICTED: similar to Amyloid-like protein 2 pr... 357 2e-98
Alignment gi|XP_856494.1| PREDICTED: similar to Amyloid-like protein 2 pr... 357 2e-98
Alignment gi|XP_856451.1| PREDICTED: similar to Amyloid-like protein 2 pr... 357 2e-98
Alignment gi|XP_856325.1| PREDICTED: similar to Amyloid-like protein 2 pr... 357 2e-98
>ref|NP_001006601.1| amyloid beta A4 protein [Canis lupus familiaris].
Length = 770
Score = 771 bits (1990), Expect = 0.0
Identities = 387/408 (94%), Positives = 390/408 (95%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
++PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN
Sbjct: 363 KLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 422
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA
Sbjct: 423 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 482
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN
Sbjct: 483 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 542
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDD+LANMISEPRISYGNDALMPSLTETKT
Sbjct: 543 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDILANMISEPRISYGNDALMPSLTETKT 602
Query: 1173 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK 1352
TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK
Sbjct: 603 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK 662
Query: 1353 TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXXXXXX 1532
TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGL
Sbjct: 663 TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVM 722
Query: 1533 XKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 1676
KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
Sbjct: 723 LKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 770
Score = 149 bits (376), Expect = 9e-36
Identities = 75/131 (57%), Positives = 76/131 (58%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNID 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADGSEDKVV
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVADVEEEEAEDDEDDEDGDEVEEE 257
Query: 363 XXXPYEEATER 395
PYEEATER
Sbjct: 258 AEEPYEEATER 268
>ref|XP_856822.1| PREDICTED: similar to amyloid beta (A4) precursor-like protein 2
isoform 25 [Canis familiaris].
Length = 695
Score = 358 bits (920), Expect = 8e-99
Identities = 203/412 (49%), Positives = 264/412 (64%), Gaps = 5/412 (1%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
+VP T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKN
Sbjct: 307 KVPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKN 365
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPKA+++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 366 LPKAERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRMALENYLAALQS 425
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
PPRP + L++YVRAE KDR HT++H++HV VDP+KAAQ++SQVMTHL VI ER N
Sbjct: 426 DPPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRN 485
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S++ET
Sbjct: 486 QSLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFTASISETPV 528
Query: 1173 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARP----AADRGLTTRPGSGL 1340
V V+ E S D++ P+HPF P+ ENE + A+ +
Sbjct: 529 DVR---VSSEES-DEIPPFHPF--HPFPSLPENEGSGAGEQDGGLIGAEEKVINSKNKVD 582
Query: 1341 TNIKTEEISEVK-MDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXX 1517
N+ +E +VK M G E + + ED + A+IGL
Sbjct: 583 ENMVIDETLDVKEMIFNAERVGGLEAEPESVGPLREDFSLSSSALIGLLVIAVAIATVIV 642
Query: 1518 XXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQ 1673
+K+QY +I HG+VEVD +TPEERHL+KMQ +GYENPTYK+ EQMQ
Sbjct: 643 ISLVMLRKRQYGTISHGIVEVDPMLTPEERHLNKMQNHGYENPTYKYLEQMQ 694
Score = 75.5 bits (184), Expect = 2e-13
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
+E VCE H HWHTV E C + L+ YGMLLPCG+D+F G E+VCCP
Sbjct: 154 KEQMEVCENHQHWHTVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCP 204
>ref|XP_856660.1| PREDICTED: similar to amyloid beta (A4) precursor-like protein 2
isoform 21 [Canis familiaris].
Length = 707
Score = 358 bits (919), Expect = 1e-98
Identities = 206/424 (48%), Positives = 271/424 (63%), Gaps = 17/424 (4%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
+VP T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKN
Sbjct: 307 KVPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKN 365
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPKA+++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 366 LPKAERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRMALENYLAALQS 425
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
PPRP + L++YVRAE KDR HT++H++HV VDP+KAAQ++SQVMTHL VI ER N
Sbjct: 426 DPPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRN 485
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S++ET
Sbjct: 486 QSLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFTASISETPV 528
Query: 1173 TVELLPVNGEFSLDDLQPWHPF-GVDSVPANTENEVE---PVDARPAA---DRGL----- 1316
V V+ E S D++ P+HPF S+P N + + E P+ A D GL
Sbjct: 529 DVR---VSSEES-DEIPPFHPFHPFPSLPENEDTQRELYHPMKKGSGAGEQDGGLIGAEE 584
Query: 1317 -----TTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGL 1481
+ + +T ++ E+ +AE G E + + ED + A+IGL
Sbjct: 585 KVINSKNKVDENMVIDETLDVKEMIFNAE--RVGGLEAEPESVGPLREDFSLSSSALIGL 642
Query: 1482 XXXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFF 1661
+K+QY +I HG+VEVD +TPEERHL+KMQ +GYENPTYK+
Sbjct: 643 LVIAVAIATVIVISLVMLRKRQYGTISHGIVEVDPMLTPEERHLNKMQNHGYENPTYKYL 702
Query: 1662 EQMQ 1673
EQMQ
Sbjct: 703 EQMQ 706
Score = 75.5 bits (184), Expect = 2e-13
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
+E VCE H HWHTV E C + L+ YGMLLPCG+D+F G E+VCCP
Sbjct: 154 KEQMEVCENHQHWHTVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCP 204
>ref|XP_856576.1| PREDICTED: similar to amyloid beta (A4) precursor-like protein 2
isoform 19 [Canis familiaris].
Length = 711
Score = 358 bits (919), Expect = 1e-98
Identities = 206/424 (48%), Positives = 271/424 (63%), Gaps = 17/424 (4%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
+VP T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKN
Sbjct: 311 KVPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKN 369
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPKA+++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 370 LPKAERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRMALENYLAALQS 429
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
PPRP + L++YVRAE KDR HT++H++HV VDP+KAAQ++SQVMTHL VI ER N
Sbjct: 430 DPPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRN 489
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S++ET
Sbjct: 490 QSLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFTASISETPV 532
Query: 1173 TVELLPVNGEFSLDDLQPWHPF-GVDSVPANTENEVE---PVDARPAA---DRGL----- 1316
V V+ E S D++ P+HPF S+P N + + E P+ A D GL
Sbjct: 533 DVR---VSSEES-DEIPPFHPFHPFPSLPENEDTQRELYHPMKKGSGAGEQDGGLIGAEE 588
Query: 1317 -----TTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGL 1481
+ + +T ++ E+ +AE G E + + ED + A+IGL
Sbjct: 589 KVINSKNKVDENMVIDETLDVKEMIFNAE--RVGGLEAEPESVGPLREDFSLSSSALIGL 646
Query: 1482 XXXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFF 1661
+K+QY +I HG+VEVD +TPEERHL+KMQ +GYENPTYK+
Sbjct: 647 LVIAVAIATVIVISLVMLRKRQYGTISHGIVEVDPMLTPEERHLNKMQNHGYENPTYKYL 706
Query: 1662 EQMQ 1673
EQMQ
Sbjct: 707 EQMQ 710
Score = 75.5 bits (184), Expect = 2e-13
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
+E VCE H HWHTV E C + L+ YGMLLPCG+D+F G E+VCCP
Sbjct: 154 KEQMEVCENHQHWHTVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCP 204
>ref|XP_856537.1| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
protein homolog) (APPH) (CDEI-box binding protein)
(CDEBP) isoform 18 [Canis familiaris].
Length = 522
Score = 358 bits (918), Expect = 1e-98
Identities = 203/411 (49%), Positives = 263/411 (63%), Gaps = 5/411 (1%)
Frame = +3
Query: 456 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 635
VP T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKNL
Sbjct: 135 VPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNL 193
Query: 636 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 815
PKA+++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 194 PKAERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRMALENYLAALQSD 253
Query: 816 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 995
PPRP + L++YVRAE KDR HT++H++HV VDP+KAAQ++SQVMTHL VI ER NQ
Sbjct: 254 PPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRNQ 313
Query: 996 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 1175
SLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S++ET
Sbjct: 314 SLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFTASISETPVD 356
Query: 1176 VELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARP----AADRGLTTRPGSGLT 1343
V V+ E S D++ P+HPF P+ ENE + A+ +
Sbjct: 357 VR---VSSEES-DEIPPFHPF--HPFPSLPENEGSGAGEQDGGLIGAEEKVINSKNKVDE 410
Query: 1344 NIKTEEISEVK-MDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXX 1520
N+ +E +VK M G E + + ED + A+IGL
Sbjct: 411 NMVIDETLDVKEMIFNAERVGGLEAEPESVGPLREDFSLSSSALIGLLVIAVAIATVIVI 470
Query: 1521 XXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQ 1673
+K+QY +I HG+VEVD +TPEERHL+KMQ +GYENPTYK+ EQMQ
Sbjct: 471 SLVMLRKRQYGTISHGIVEVDPMLTPEERHLNKMQNHGYENPTYKYLEQMQ 521
>ref|XP_856859.1| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
protein homolog) (APPH) (CDEI-box binding protein)
(CDEBP) isoform 26 [Canis familiaris].
Length = 755
Score = 357 bits (917), Expect = 2e-98
Identities = 202/411 (49%), Positives = 263/411 (63%), Gaps = 5/411 (1%)
Frame = +3
Query: 456 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 635
+P T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKNL
Sbjct: 368 IPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNL 426
Query: 636 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 815
PKA+++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 427 PKAERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRMALENYLAALQSD 486
Query: 816 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 995
PPRP + L++YVRAE KDR HT++H++HV VDP+KAAQ++SQVMTHL VI ER NQ
Sbjct: 487 PPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRNQ 546
Query: 996 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 1175
SLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S++ET
Sbjct: 547 SLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFTASISETPVD 589
Query: 1176 VELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARP----AADRGLTTRPGSGLT 1343
V V+ E S D++ P+HPF P+ ENE + A+ +
Sbjct: 590 VR---VSSEES-DEIPPFHPF--HPFPSLPENEGSGAGEQDGGLIGAEEKVINSKNKVDE 643
Query: 1344 NIKTEEISEVK-MDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXX 1520
N+ +E +VK M G E + + ED + A+IGL
Sbjct: 644 NMVIDETLDVKEMIFNAERVGGLEAEPESVGPLREDFSLSSSALIGLLVIAVAIATVIVI 703
Query: 1521 XXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQ 1673
+K+QY +I HG+VEVD +TPEERHL+KMQ +GYENPTYK+ EQMQ
Sbjct: 704 SLVMLRKRQYGTISHGIVEVDPMLTPEERHLNKMQNHGYENPTYKYLEQMQ 754
Score = 75.5 bits (184), Expect = 2e-13
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
+E VCE H HWHTV E C + L+ YGMLLPCG+D+F G E+VCCP
Sbjct: 154 KEQMEVCENHQHWHTVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCP 204
>ref|XP_856781.1| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
protein homolog) (APPH) (CDEI-box binding protein)
(CDEBP) isoform 24 [Canis familiaris].
Length = 732
Score = 357 bits (917), Expect = 2e-98
Identities = 202/411 (49%), Positives = 263/411 (63%), Gaps = 5/411 (1%)
Frame = +3
Query: 456 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 635
+P T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKNL
Sbjct: 345 IPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNL 403
Query: 636 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 815
PKA+++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 404 PKAERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRMALENYLAALQSD 463
Query: 816 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 995
PPRP + L++YVRAE KDR HT++H++HV VDP+KAAQ++SQVMTHL VI ER NQ
Sbjct: 464 PPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRNQ 523
Query: 996 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 1175
SLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S++ET
Sbjct: 524 SLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFTASISETPVD 566
Query: 1176 VELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARP----AADRGLTTRPGSGLT 1343
V V+ E S D++ P+HPF P+ ENE + A+ +
Sbjct: 567 VR---VSSEES-DEIPPFHPF--HPFPSLPENEGSGAGEQDGGLIGAEEKVINSKNKVDE 620
Query: 1344 NIKTEEISEVK-MDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXX 1520
N+ +E +VK M G E + + ED + A+IGL
Sbjct: 621 NMVIDETLDVKEMIFNAERVGGLEAEPESVGPLREDFSLSSSALIGLLVIAVAIATVIVI 680
Query: 1521 XXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQ 1673
+K+QY +I HG+VEVD +TPEERHL+KMQ +GYENPTYK+ EQMQ
Sbjct: 681 SLVMLRKRQYGTISHGIVEVDPMLTPEERHLNKMQNHGYENPTYKYLEQMQ 731
Score = 75.5 bits (184), Expect = 2e-13
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
+E VCE H HWHTV E C + L+ YGMLLPCG+D+F G E+VCCP
Sbjct: 154 KEQMEVCENHQHWHTVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCP 204
>ref|XP_856494.1| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
protein homolog) (APPH) (CDEI-box binding protein)
(CDEBP) isoform 17 [Canis familiaris].
Length = 773
Score = 357 bits (917), Expect = 2e-98
Identities = 206/423 (48%), Positives = 270/423 (63%), Gaps = 17/423 (4%)
Frame = +3
Query: 456 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 635
VP T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKNL
Sbjct: 374 VPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNL 432
Query: 636 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 815
PKA+++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 433 PKAERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRMALENYLAALQSD 492
Query: 816 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 995
PPRP + L++YVRAE KDR HT++H++HV VDP+KAAQ++SQVMTHL VI ER NQ
Sbjct: 493 PPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRNQ 552
Query: 996 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 1175
SLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S++ET
Sbjct: 553 SLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFTASISETPVD 595
Query: 1176 VELLPVNGEFSLDDLQPWHPF-GVDSVPANTENEVE---PVDARPAA---DRGL------ 1316
V V+ E S D++ P+HPF S+P N + + E P+ A D GL
Sbjct: 596 VR---VSSEES-DEIPPFHPFHPFPSLPENEDTQRELYHPMKKGSGAGEQDGGLIGAEEK 651
Query: 1317 ----TTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLX 1484
+ + +T ++ E+ +AE G E + + ED + A+IGL
Sbjct: 652 VINSKNKVDENMVIDETLDVKEMIFNAE--RVGGLEAEPESVGPLREDFSLSSSALIGLL 709
Query: 1485 XXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFE 1664
+K+QY +I HG+VEVD +TPEERHL+KMQ +GYENPTYK+ E
Sbjct: 710 VIAVAIATVIVISLVMLRKRQYGTISHGIVEVDPMLTPEERHLNKMQNHGYENPTYKYLE 769
Query: 1665 QMQ 1673
QMQ
Sbjct: 770 QMQ 772
Score = 75.5 bits (184), Expect = 2e-13
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
+E VCE H HWHTV E C + L+ YGMLLPCG+D+F G E+VCCP
Sbjct: 154 KEQMEVCENHQHWHTVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCP 204
>ref|XP_856451.1| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
protein homolog) (APPH) (CDEI-box binding protein)
(CDEBP) isoform 16 [Canis familiaris].
Length = 764
Score = 357 bits (917), Expect = 2e-98
Identities = 206/423 (48%), Positives = 270/423 (63%), Gaps = 17/423 (4%)
Frame = +3
Query: 456 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 635
VP T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKNL
Sbjct: 365 VPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNL 423
Query: 636 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 815
PKA+++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 424 PKAERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRMALENYLAALQSD 483
Query: 816 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 995
PPRP + L++YVRAE KDR HT++H++HV VDP+KAAQ++SQVMTHL VI ER NQ
Sbjct: 484 PPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRNQ 543
Query: 996 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 1175
SLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S++ET
Sbjct: 544 SLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFTASISETPVD 586
Query: 1176 VELLPVNGEFSLDDLQPWHPF-GVDSVPANTENEVE---PVDARPAA---DRGL------ 1316
V V+ E S D++ P+HPF S+P N + + E P+ A D GL
Sbjct: 587 VR---VSSEES-DEIPPFHPFHPFPSLPENEDTQRELYHPMKKGSGAGEQDGGLIGAEEK 642
Query: 1317 ----TTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLX 1484
+ + +T ++ E+ +AE G E + + ED + A+IGL
Sbjct: 643 VINSKNKVDENMVIDETLDVKEMIFNAE--RVGGLEAEPESVGPLREDFSLSSSALIGLL 700
Query: 1485 XXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFE 1664
+K+QY +I HG+VEVD +TPEERHL+KMQ +GYENPTYK+ E
Sbjct: 701 VIAVAIATVIVISLVMLRKRQYGTISHGIVEVDPMLTPEERHLNKMQNHGYENPTYKYLE 760
Query: 1665 QMQ 1673
QMQ
Sbjct: 761 QMQ 763
Score = 75.5 bits (184), Expect = 2e-13
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
+E VCE H HWHTV E C + L+ YGMLLPCG+D+F G E+VCCP
Sbjct: 154 KEQMEVCENHQHWHTVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCP 204
>ref|XP_856325.1| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
protein homolog) (APPH) (CDEI-box binding protein)
(CDEBP) isoform 13 [Canis familiaris].
Length = 785
Score = 357 bits (917), Expect = 2e-98
Identities = 206/423 (48%), Positives = 270/423 (63%), Gaps = 17/423 (4%)
Frame = +3
Query: 456 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 635
VP T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKNL
Sbjct: 386 VPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNL 444
Query: 636 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 815
PKA+++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 445 PKAERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRMALENYLAALQSD 504
Query: 816 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 995
PPRP + L++YVRAE KDR HT++H++HV VDP+KAAQ++SQVMTHL VI ER NQ
Sbjct: 505 PPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRNQ 564
Query: 996 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 1175
SLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S++ET
Sbjct: 565 SLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFTASISETPVD 607
Query: 1176 VELLPVNGEFSLDDLQPWHPF-GVDSVPANTENEVE---PVDARPAA---DRGL------ 1316
V V+ E S D++ P+HPF S+P N + + E P+ A D GL
Sbjct: 608 VR---VSSEES-DEIPPFHPFHPFPSLPENEDTQRELYHPMKKGSGAGEQDGGLIGAEEK 663
Query: 1317 ----TTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLX 1484
+ + +T ++ E+ +AE G E + + ED + A+IGL
Sbjct: 664 VINSKNKVDENMVIDETLDVKEMIFNAE--RVGGLEAEPESVGPLREDFSLSSSALIGLL 721
Query: 1485 XXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFE 1664
+K+QY +I HG+VEVD +TPEERHL+KMQ +GYENPTYK+ E
Sbjct: 722 VIAVAIATVIVISLVMLRKRQYGTISHGIVEVDPMLTPEERHLNKMQNHGYENPTYKYLE 781
Query: 1665 QMQ 1673
QMQ
Sbjct: 782 QMQ 784
Score = 75.5 bits (184), Expect = 2e-13
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
+E VCE H HWHTV E C + L+ YGMLLPCG+D+F G E+VCCP
Sbjct: 154 KEQMEVCENHQHWHTVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCP 204
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 69,654,661
Number of extensions: 1737613
Number of successful extensions: 7384
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 7265
Number of HSP's successfully gapped: 55
Length of query: 651
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 542
Effective length of database: 15,240,880
Effective search space: 8260556960
Effective search space used: 8260556960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000562
(1953 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129603.1| amyloid beta A4 protein isoform g [Homo sapi... 906 0.0
Alignment gi|NP_958817.1| amyloid beta A4 protein isoform c precursor [Ho... 906 0.0
Alignment gi|NP_001129601.1| amyloid beta A4 protein isoform e precursor ... 906 0.0
Alignment gi|NP_001191232.1| amyloid beta A4 protein isoform j precursor ... 859 0.0
Alignment gi|NP_001129488.1| amyloid beta A4 protein isoform d [Homo sapi... 766 0.0
Alignment gi|NP_958816.1| amyloid beta A4 protein isoform b precursor [Ho... 766 0.0
Alignment gi|NP_000475.1| amyloid beta A4 protein isoform a precursor [Ho... 766 0.0
Alignment gi|NP_001129602.1| amyloid beta A4 protein isoform f precursor ... 766 0.0
Alignment gi|NP_001191231.1| amyloid beta A4 protein isoform i precursor ... 719 0.0
Alignment gi|NP_001191230.1| amyloid beta A4 protein isoform h precursor ... 719 0.0
>ref|NP_001129603.1| amyloid beta A4 protein isoform g [Homo sapiens].
Length = 660
Score = 906 bits (2342), Expect = 0.0
Identities = 463/558 (82%), Positives = 464/558 (83%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 103 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVD 162
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADGSEDKVV
Sbjct: 163 SADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEE 222
Query: 363 XXXPYEEATERXXXXXXXXXXXXXXXXXXXRVPTTAASTPDAVDKYLETPGDENEHAHFQ 542
PYEEATER RVPTTAASTPDAVDKYLETPGDENEHAHFQ
Sbjct: 223 AEEPYEEATERTTSIATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQ 282
Query: 543 KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ 722
KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ
Sbjct: 283 KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ 342
Query: 723 LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 902
LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF
Sbjct: 343 LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 402
Query: 903 EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY 1082
EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY
Sbjct: 403 EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY 462
Query: 1083 SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHPFGVDSVPAN 1262
SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWH FG DSVPAN
Sbjct: 463 SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHSFGADSVPAN 522
Query: 1263 TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA 1442
TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA
Sbjct: 523 TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA 582
Query: 1443 EDVGSNKGAIIGLXXXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKM 1622
EDVGSNKGAIIGL KKKQYTSIHHGVVEVDAAVTPEERHLSKM
Sbjct: 583 EDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKM 642
Query: 1623 QQNGYENPTYKFFEQMQN 1676
QQNGYENPTYKFFEQMQN
Sbjct: 643 QQNGYENPTYKFFEQMQN 660
>ref|NP_958817.1| amyloid beta A4 protein isoform c precursor [Homo sapiens].
Length = 695
Score = 906 bits (2342), Expect = 0.0
Identities = 463/558 (82%), Positives = 464/558 (83%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVD 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADGSEDKVV
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEE 257
Query: 363 XXXPYEEATERXXXXXXXXXXXXXXXXXXXRVPTTAASTPDAVDKYLETPGDENEHAHFQ 542
PYEEATER RVPTTAASTPDAVDKYLETPGDENEHAHFQ
Sbjct: 258 AEEPYEEATERTTSIATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQ 317
Query: 543 KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ 722
KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ
Sbjct: 318 KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ 377
Query: 723 LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 902
LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF
Sbjct: 378 LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 437
Query: 903 EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY 1082
EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY
Sbjct: 438 EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY 497
Query: 1083 SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHPFGVDSVPAN 1262
SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWH FG DSVPAN
Sbjct: 498 SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHSFGADSVPAN 557
Query: 1263 TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA 1442
TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA
Sbjct: 558 TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA 617
Query: 1443 EDVGSNKGAIIGLXXXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKM 1622
EDVGSNKGAIIGL KKKQYTSIHHGVVEVDAAVTPEERHLSKM
Sbjct: 618 EDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKM 677
Query: 1623 QQNGYENPTYKFFEQMQN 1676
QQNGYENPTYKFFEQMQN
Sbjct: 678 QQNGYENPTYKFFEQMQN 695
>ref|NP_001129601.1| amyloid beta A4 protein isoform e precursor [Homo sapiens].
Length = 639
Score = 906 bits (2342), Expect = 0.0
Identities = 463/558 (82%), Positives = 464/558 (83%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 82 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVD 141
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADGSEDKVV
Sbjct: 142 SADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEE 201
Query: 363 XXXPYEEATERXXXXXXXXXXXXXXXXXXXRVPTTAASTPDAVDKYLETPGDENEHAHFQ 542
PYEEATER RVPTTAASTPDAVDKYLETPGDENEHAHFQ
Sbjct: 202 AEEPYEEATERTTSIATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQ 261
Query: 543 KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ 722
KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ
Sbjct: 262 KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ 321
Query: 723 LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 902
LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF
Sbjct: 322 LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 381
Query: 903 EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY 1082
EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY
Sbjct: 382 EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY 441
Query: 1083 SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHPFGVDSVPAN 1262
SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWH FG DSVPAN
Sbjct: 442 SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHSFGADSVPAN 501
Query: 1263 TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA 1442
TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA
Sbjct: 502 TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA 561
Query: 1443 EDVGSNKGAIIGLXXXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKM 1622
EDVGSNKGAIIGL KKKQYTSIHHGVVEVDAAVTPEERHLSKM
Sbjct: 562 EDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKM 621
Query: 1623 QQNGYENPTYKFFEQMQN 1676
QQNGYENPTYKFFEQMQN
Sbjct: 622 QQNGYENPTYKFFEQMQN 639
>ref|NP_001191232.1| amyloid beta A4 protein isoform j precursor [Homo sapiens].
Length = 677
Score = 859 bits (2220), Expect = 0.0
Identities = 445/558 (79%), Positives = 446/558 (79%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVD 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADGSEDKVV
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEE 257
Query: 363 XXXPYEEATERXXXXXXXXXXXXXXXXXXXRVPTTAASTPDAVDKYLETPGDENEHAHFQ 542
PYEEATER RVPTTAASTPDAVDKYLETPGDENEHAHFQ
Sbjct: 258 AEEPYEEATERTTSIATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQ 317
Query: 543 KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ 722
KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ
Sbjct: 318 KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ 377
Query: 723 LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 902
LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF
Sbjct: 378 LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 437
Query: 903 EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY 1082
EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY
Sbjct: 438 EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY 497
Query: 1083 SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHPFGVDSVPAN 1262
SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWH FG DSVPAN
Sbjct: 498 SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHSFGADSVPAN 557
Query: 1263 TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA 1442
TENE GSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA
Sbjct: 558 TENE------------------GSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA 599
Query: 1443 EDVGSNKGAIIGLXXXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKM 1622
EDVGSNKGAIIGL KKKQYTSIHHGVVEVDAAVTPEERHLSKM
Sbjct: 600 EDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKM 659
Query: 1623 QQNGYENPTYKFFEQMQN 1676
QQNGYENPTYKFFEQMQN
Sbjct: 660 QQNGYENPTYKFFEQMQN 677
>ref|NP_001129488.1| amyloid beta A4 protein isoform d [Homo sapiens].
Length = 746
Score = 766 bits (1979), Expect = 0.0
Identities = 386/407 (94%), Positives = 387/407 (95%)
Frame = +3
Query: 456 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 635
+PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL
Sbjct: 340 IPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 399
Query: 636 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 815
PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV
Sbjct: 400 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 459
Query: 816 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 995
PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ
Sbjct: 460 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 519
Query: 996 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 1175
SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT
Sbjct: 520 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 579
Query: 1176 VELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKT 1355
VELLPVNGEFSLDDLQPWH FG DSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKT
Sbjct: 580 VELLPVNGEFSLDDLQPWHSFGADSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKT 639
Query: 1356 EEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXXXXXXX 1535
EEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGL
Sbjct: 640 EEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVML 699
Query: 1536 KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 1676
KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
Sbjct: 700 KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 746
Score = 149 bits (376), Expect = 9e-36
Identities = 75/131 (57%), Positives = 76/131 (58%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 133 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVD 192
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADGSEDKVV
Sbjct: 193 SADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEE 252
Query: 363 XXXPYEEATER 395
PYEEATER
Sbjct: 253 AEEPYEEATER 263
>ref|NP_958816.1| amyloid beta A4 protein isoform b precursor [Homo sapiens].
Length = 751
Score = 766 bits (1979), Expect = 0.0
Identities = 386/407 (94%), Positives = 387/407 (95%)
Frame = +3
Query: 456 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 635
+PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL
Sbjct: 345 IPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 404
Query: 636 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 815
PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV
Sbjct: 405 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 464
Query: 816 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 995
PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ
Sbjct: 465 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 524
Query: 996 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 1175
SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT
Sbjct: 525 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 584
Query: 1176 VELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKT 1355
VELLPVNGEFSLDDLQPWH FG DSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKT
Sbjct: 585 VELLPVNGEFSLDDLQPWHSFGADSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKT 644
Query: 1356 EEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXXXXXXX 1535
EEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGL
Sbjct: 645 EEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVML 704
Query: 1536 KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 1676
KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
Sbjct: 705 KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 751
Score = 149 bits (376), Expect = 9e-36
Identities = 75/131 (57%), Positives = 76/131 (58%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVD 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADGSEDKVV
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEE 257
Query: 363 XXXPYEEATER 395
PYEEATER
Sbjct: 258 AEEPYEEATER 268
>ref|NP_000475.1| amyloid beta A4 protein isoform a precursor [Homo sapiens].
Length = 770
Score = 766 bits (1979), Expect = 0.0
Identities = 386/408 (94%), Positives = 388/408 (95%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
++PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN
Sbjct: 363 KLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 422
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA
Sbjct: 423 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 482
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN
Sbjct: 483 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 542
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT
Sbjct: 543 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 602
Query: 1173 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK 1352
TVELLPVNGEFSLDDLQPWH FG DSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK
Sbjct: 603 TVELLPVNGEFSLDDLQPWHSFGADSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK 662
Query: 1353 TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXXXXXX 1532
TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGL
Sbjct: 663 TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVM 722
Query: 1533 XKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 1676
KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
Sbjct: 723 LKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 770
Score = 149 bits (376), Expect = 9e-36
Identities = 75/131 (57%), Positives = 76/131 (58%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVD 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADGSEDKVV
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEE 257
Query: 363 XXXPYEEATER 395
PYEEATER
Sbjct: 258 AEEPYEEATER 268
>ref|NP_001129602.1| amyloid beta A4 protein isoform f precursor [Homo sapiens].
Length = 714
Score = 766 bits (1979), Expect = 0.0
Identities = 386/408 (94%), Positives = 388/408 (95%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
++PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN
Sbjct: 307 KLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 366
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA
Sbjct: 367 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 426
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN
Sbjct: 427 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 486
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT
Sbjct: 487 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 546
Query: 1173 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK 1352
TVELLPVNGEFSLDDLQPWH FG DSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK
Sbjct: 547 TVELLPVNGEFSLDDLQPWHSFGADSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK 606
Query: 1353 TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXXXXXX 1532
TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGL
Sbjct: 607 TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVM 666
Query: 1533 XKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 1676
KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
Sbjct: 667 LKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 714
Score = 149 bits (376), Expect = 9e-36
Identities = 75/131 (57%), Positives = 76/131 (58%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 82 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVD 141
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADGSEDKVV
Sbjct: 142 SADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEE 201
Query: 363 XXXPYEEATER 395
PYEEATER
Sbjct: 202 AEEPYEEATER 212
>ref|NP_001191231.1| amyloid beta A4 protein isoform i precursor [Homo sapiens].
Length = 733
Score = 719 bits (1857), Expect = 0.0
Identities = 368/407 (90%), Positives = 369/407 (90%)
Frame = +3
Query: 456 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 635
+PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL
Sbjct: 345 IPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 404
Query: 636 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 815
PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV
Sbjct: 405 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 464
Query: 816 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 995
PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ
Sbjct: 465 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 524
Query: 996 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 1175
SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT
Sbjct: 525 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 584
Query: 1176 VELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKT 1355
VELLPVNGEFSLDDLQPWH FG DSVPANTENE GSGLTNIKT
Sbjct: 585 VELLPVNGEFSLDDLQPWHSFGADSVPANTENE------------------GSGLTNIKT 626
Query: 1356 EEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXXXXXXX 1535
EEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGL
Sbjct: 627 EEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVML 686
Query: 1536 KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 1676
KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
Sbjct: 687 KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 733
Score = 149 bits (376), Expect = 9e-36
Identities = 75/131 (57%), Positives = 76/131 (58%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVD 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADGSEDKVV
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEE 257
Query: 363 XXXPYEEATER 395
PYEEATER
Sbjct: 258 AEEPYEEATER 268
>ref|NP_001191230.1| amyloid beta A4 protein isoform h precursor [Homo sapiens].
Length = 752
Score = 719 bits (1857), Expect = 0.0
Identities = 368/408 (90%), Positives = 370/408 (90%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
++PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN
Sbjct: 363 KLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 422
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA
Sbjct: 423 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 482
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN
Sbjct: 483 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 542
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT
Sbjct: 543 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 602
Query: 1173 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK 1352
TVELLPVNGEFSLDDLQPWH FG DSVPANTENE GSGLTNIK
Sbjct: 603 TVELLPVNGEFSLDDLQPWHSFGADSVPANTENE------------------GSGLTNIK 644
Query: 1353 TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXXXXXX 1532
TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGL
Sbjct: 645 TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVM 704
Query: 1533 XKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 1676
KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
Sbjct: 705 LKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 752
Score = 149 bits (376), Expect = 9e-36
Identities = 75/131 (57%), Positives = 76/131 (58%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVD 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADGSEDKVV
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEE 257
Query: 363 XXXPYEEATER 395
PYEEATER
Sbjct: 258 AEEPYEEATER 268
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,564,694
Number of extensions: 1713893
Number of successful extensions: 6672
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 6536
Number of HSP's successfully gapped: 29
Length of query: 651
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 542
Effective length of database: 14,704,088
Effective search space: 7969615696
Effective search space used: 7969615696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000562
(1953 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031497.2| amyloid beta A4 protein isoform 2 precursor [Mu... 900 0.0
Alignment gi|NP_001185752.1| amyloid beta A4 protein isoform 1 precursor ... 762 0.0
Alignment gi|NP_001185753.1| amyloid beta A4 protein isoform 3 precursor ... 761 0.0
Alignment gi|NP_001185755.1| amyloid beta A4 protein isoform 6 precursor ... 715 0.0
Alignment gi|NP_001185754.1| amyloid beta A4 protein isoform 5 precursor ... 714 0.0
Alignment gi|NP_001095926.1| amyloid-like protein 2 isoform b [Mus muscul... 354 1e-97
Alignment gi|NP_033821.1| amyloid-like protein 2 isoform c [Mus musculus]. 353 4e-97
Alignment gi|NP_001095925.1| amyloid-like protein 2 isoform a [Mus muscul... 352 8e-97
Alignment gi|NP_031493.2| amyloid-like protein 1 [Mus musculus]. 242 7e-64
>ref|NP_031497.2| amyloid beta A4 protein isoform 2 precursor [Mus musculus].
Length = 695
Score = 900 bits (2326), Expect = 0.0
Identities = 460/558 (82%), Positives = 462/558 (82%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDSVD 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADG EDKVV
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGGEDKVVEVAEEEEVADVEEEEADDDEDVEDGDEVEEE 257
Query: 363 XXXPYEEATERXXXXXXXXXXXXXXXXXXXRVPTTAASTPDAVDKYLETPGDENEHAHFQ 542
PYEEATER RVPTTAASTPDAVDKYLETPGDENEHAHFQ
Sbjct: 258 AEEPYEEATERTTSTATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQ 317
Query: 543 KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ 722
KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ
Sbjct: 318 KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQ 377
Query: 723 LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 902
LVETHMARVEAMLNDRRRLALENYITALQAVPPRP HVFNMLKKYVRAEQKDRQHTLKHF
Sbjct: 378 LVETHMARVEAMLNDRRRLALENYITALQAVPPRPHHVFNMLKKYVRAEQKDRQHTLKHF 437
Query: 903 EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY 1082
EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY
Sbjct: 438 EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY 497
Query: 1083 SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHPFGVDSVPAN 1262
SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHPFGVDSVPAN
Sbjct: 498 SDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHPFGVDSVPAN 557
Query: 1263 TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFA 1442
TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEF HDSG+EV HQKLVFFA
Sbjct: 558 TENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFGHDSGFEVRHQKLVFFA 617
Query: 1443 EDVGSNKGAIIGLXXXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKM 1622
EDVGSNKGAIIGL KKKQYTSIHHGVVEVDAAVTPEERHLSKM
Sbjct: 618 EDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKM 677
Query: 1623 QQNGYENPTYKFFEQMQN 1676
QQNGYENPTYKFFEQMQN
Sbjct: 678 QQNGYENPTYKFFEQMQN 695
>ref|NP_001185752.1| amyloid beta A4 protein isoform 1 precursor [Mus musculus].
Length = 770
Score = 762 bits (1967), Expect = 0.0
Identities = 384/408 (94%), Positives = 387/408 (94%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
++PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN
Sbjct: 363 KLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 422
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA
Sbjct: 423 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 482
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
VPPRP HVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN
Sbjct: 483 VPPRPHHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 542
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT
Sbjct: 543 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 602
Query: 1173 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK 1352
TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK
Sbjct: 603 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK 662
Query: 1353 TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXXXXXX 1532
TEEISEVKMDAEF HDSG+EV HQKLVFFAEDVGSNKGAIIGL
Sbjct: 663 TEEISEVKMDAEFGHDSGFEVRHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVM 722
Query: 1533 XKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 1676
KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
Sbjct: 723 LKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 770
Score = 147 bits (372), Expect = 2e-35
Identities = 74/131 (56%), Positives = 75/131 (57%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDSVD 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADG EDKVV
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGGEDKVVEVAEEEEVADVEEEEADDDEDVEDGDEVEEE 257
Query: 363 XXXPYEEATER 395
PYEEATER
Sbjct: 258 AEEPYEEATER 268
>ref|NP_001185753.1| amyloid beta A4 protein isoform 3 precursor [Mus musculus].
Length = 751
Score = 761 bits (1964), Expect = 0.0
Identities = 384/406 (94%), Positives = 385/406 (94%)
Frame = +3
Query: 459 PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLP 638
PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLP
Sbjct: 346 PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLP 405
Query: 639 KADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVP 818
KADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVP
Sbjct: 406 KADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVP 465
Query: 819 PRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQS 998
PRP HVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQS
Sbjct: 466 PRPHHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQS 525
Query: 999 LSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTTV 1178
LSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTTV
Sbjct: 526 LSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTTV 585
Query: 1179 ELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKTE 1358
ELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKTE
Sbjct: 586 ELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKTE 645
Query: 1359 EISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXXXXXXXK 1538
EISEVKMDAEF HDSG+EV HQKLVFFAEDVGSNKGAIIGL K
Sbjct: 646 EISEVKMDAEFGHDSGFEVRHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVMLK 705
Query: 1539 KKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 1676
KKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
Sbjct: 706 KKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 751
Score = 147 bits (372), Expect = 2e-35
Identities = 74/131 (56%), Positives = 75/131 (57%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDSVD 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADG EDKVV
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGGEDKVVEVAEEEEVADVEEEEADDDEDVEDGDEVEEE 257
Query: 363 XXXPYEEATER 395
PYEEATER
Sbjct: 258 AEEPYEEATER 268
>ref|NP_001185755.1| amyloid beta A4 protein isoform 6 precursor [Mus musculus].
Length = 752
Score = 715 bits (1845), Expect = 0.0
Identities = 366/408 (89%), Positives = 369/408 (90%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
++PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN
Sbjct: 363 KLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 422
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA
Sbjct: 423 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 482
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
VPPRP HVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN
Sbjct: 483 VPPRPHHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 542
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT
Sbjct: 543 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 602
Query: 1173 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK 1352
TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENE GSGLTNIK
Sbjct: 603 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENE------------------GSGLTNIK 644
Query: 1353 TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXXXXXX 1532
TEEISEVKMDAEF HDSG+EV HQKLVFFAEDVGSNKGAIIGL
Sbjct: 645 TEEISEVKMDAEFGHDSGFEVRHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVM 704
Query: 1533 XKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 1676
KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
Sbjct: 705 LKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 752
Score = 147 bits (372), Expect = 2e-35
Identities = 74/131 (56%), Positives = 75/131 (57%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDSVD 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADG EDKVV
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGGEDKVVEVAEEEEVADVEEEEADDDEDVEDGDEVEEE 257
Query: 363 XXXPYEEATER 395
PYEEATER
Sbjct: 258 AEEPYEEATER 268
>ref|NP_001185754.1| amyloid beta A4 protein isoform 5 precursor [Mus musculus].
Length = 733
Score = 714 bits (1842), Expect = 0.0
Identities = 366/406 (90%), Positives = 367/406 (90%)
Frame = +3
Query: 459 PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLP 638
PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLP
Sbjct: 346 PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLP 405
Query: 639 KADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVP 818
KADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVP
Sbjct: 406 KADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVP 465
Query: 819 PRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQS 998
PRP HVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQS
Sbjct: 466 PRPHHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQS 525
Query: 999 LSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTTV 1178
LSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTTV
Sbjct: 526 LSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTTV 585
Query: 1179 ELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKTE 1358
ELLPVNGEFSLDDLQPWHPFGVDSVPANTENE GSGLTNIKTE
Sbjct: 586 ELLPVNGEFSLDDLQPWHPFGVDSVPANTENE------------------GSGLTNIKTE 627
Query: 1359 EISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXXXXXXXK 1538
EISEVKMDAEF HDSG+EV HQKLVFFAEDVGSNKGAIIGL K
Sbjct: 628 EISEVKMDAEFGHDSGFEVRHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVMLK 687
Query: 1539 KKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 1676
KKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
Sbjct: 688 KKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 733
Score = 147 bits (372), Expect = 2e-35
Identities = 74/131 (56%), Positives = 75/131 (57%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDSVD 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADG EDKVV
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGGEDKVVEVAEEEEVADVEEEEADDDEDVEDGDEVEEE 257
Query: 363 XXXPYEEATER 395
PYEEATER
Sbjct: 258 AEEPYEEATER 268
>ref|NP_001095926.1| amyloid-like protein 2 isoform b [Mus musculus].
Length = 707
Score = 354 bits (909), Expect = 1e-97
Identities = 204/426 (47%), Positives = 265/426 (62%), Gaps = 19/426 (4%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
+VP T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKN
Sbjct: 307 KVPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKN 365
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPK +++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 366 LPKTERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRIALENYLAALQS 425
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
PPRP + L++YVRAE KDR HT++H++HV VDP+KAAQ++SQVMTHL VI ER N
Sbjct: 426 DPPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRN 485
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S++E
Sbjct: 486 QSLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFTSSISENPV 528
Query: 1173 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENE-VEPVDARPAADRGLTTRPGSGLTNI 1349
V + E + P HPF P+ +ENE +P P GL
Sbjct: 529 DVRVSSEESE-EIPPFHPLHPF-----PSLSENEDTQPELYHPMKKGSGMAEQDGGLIGA 582
Query: 1350 KTEEI-SEVKMDAEFRHDSGYEVHHQKLVFFAEDVGS-----------------NKGAII 1475
+ + I S+ KMD D +V ++++F AE VG + A+I
Sbjct: 583 EEKVINSKNKMDENMVIDETLDV--KEMIFNAERVGGLEEEPESVGPLREDFSLSSNALI 640
Query: 1476 GLXXXXXXXXXXXXXXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYK 1655
GL +K+QY +I HG+VEVD +TPEERHL+KMQ +GYENPTYK
Sbjct: 641 GLLVIAVAIATVIVISLVMLRKRQYGTISHGIVEVDPMLTPEERHLNKMQNHGYENPTYK 700
Query: 1656 FFEQMQ 1673
+ EQMQ
Sbjct: 701 YLEQMQ 706
Score = 72.8 bits (177), Expect = 9e-13
Identities = 28/51 (54%), Positives = 34/51 (66%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
QE VCE H WHT+ E C + L+ YGMLLPCG+D+F G E+VCCP
Sbjct: 154 QERMEVCEKHQRWHTLVKEACLTEGLTLYSYGMLLPCGVDQFHGTEYVCCP 204
>ref|NP_033821.1| amyloid-like protein 2 isoform c [Mus musculus].
Length = 695
Score = 353 bits (905), Expect = 4e-97
Identities = 199/412 (48%), Positives = 258/412 (62%), Gaps = 5/412 (1%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
+VP T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKN
Sbjct: 307 KVPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKN 365
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPK +++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 366 LPKTERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRIALENYLAALQS 425
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
PPRP + L++YVRAE KDR HT++H++HV VDP+KAAQ++SQVMTHL VI ER N
Sbjct: 426 DPPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRN 485
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S++E
Sbjct: 486 QSLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFTSSISENPV 528
Query: 1173 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENE----VEPVDARPAADRGLTTRPGSGL 1340
V + E + P HPF P+ +ENE E A+ +
Sbjct: 529 DVRVSSEESE-EIPPFHPLHPF-----PSLSENEGSGMAEQDGGLIGAEEKVINSKNKMD 582
Query: 1341 TNIKTEEISEVK-MDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXX 1517
N+ +E +VK M G E + + ED + A+IGL
Sbjct: 583 ENMVIDETLDVKEMIFNAERVGGLEEEPESVGPLREDFSLSSNALIGLLVIAVAIATVIV 642
Query: 1518 XXXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQ 1673
+K+QY +I HG+VEVD +TPEERHL+KMQ +GYENPTYK+ EQMQ
Sbjct: 643 ISLVMLRKRQYGTISHGIVEVDPMLTPEERHLNKMQNHGYENPTYKYLEQMQ 694
Score = 72.8 bits (177), Expect = 9e-13
Identities = 28/51 (54%), Positives = 34/51 (66%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
QE VCE H WHT+ E C + L+ YGMLLPCG+D+F G E+VCCP
Sbjct: 154 QERMEVCEKHQRWHTLVKEACLTEGLTLYSYGMLLPCGVDQFHGTEYVCCP 204
>ref|NP_001095925.1| amyloid-like protein 2 isoform a [Mus musculus].
Length = 751
Score = 352 bits (902), Expect = 8e-97
Identities = 198/411 (48%), Positives = 257/411 (62%), Gaps = 5/411 (1%)
Frame = +3
Query: 456 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 635
+P T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKNL
Sbjct: 364 IPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNL 422
Query: 636 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 815
PK +++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQ+
Sbjct: 423 PKTERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRIALENYLAALQSD 482
Query: 816 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 995
PPRP + L++YVRAE KDR HT++H++HV VDP+KAAQ++SQVMTHL VI ER NQ
Sbjct: 483 PPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRNQ 542
Query: 996 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTT 1175
SLSLLY VP VA+EIQ+E+DELLQ+++ A+M D S++E
Sbjct: 543 SLSLLYKVPYVAQEIQEEIDELLQEQR-------ADM----------DQFTSSISENPVD 585
Query: 1176 VELLPVNGEFSLDDLQPWHPFGVDSVPANTENE----VEPVDARPAADRGLTTRPGSGLT 1343
V + E + P HPF P+ +ENE E A+ +
Sbjct: 586 VRVSSEESE-EIPPFHPLHPF-----PSLSENEGSGMAEQDGGLIGAEEKVINSKNKMDE 639
Query: 1344 NIKTEEISEVK-MDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXX 1520
N+ +E +VK M G E + + ED + A+IGL
Sbjct: 640 NMVIDETLDVKEMIFNAERVGGLEEEPESVGPLREDFSLSSNALIGLLVIAVAIATVIVI 699
Query: 1521 XXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQ 1673
+K+QY +I HG+VEVD +TPEERHL+KMQ +GYENPTYK+ EQMQ
Sbjct: 700 SLVMLRKRQYGTISHGIVEVDPMLTPEERHLNKMQNHGYENPTYKYLEQMQ 750
Score = 72.8 bits (177), Expect = 9e-13
Identities = 28/51 (54%), Positives = 34/51 (66%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
QE VCE H WHT+ E C + L+ YGMLLPCG+D+F G E+VCCP
Sbjct: 154 QERMEVCEKHQRWHTLVKEACLTEGLTLYSYGMLLPCGVDQFHGTEYVCCP 204
>ref|NP_031493.2| amyloid-like protein 1 [Mus musculus].
Length = 654
Score = 242 bits (618), Expect = 7e-64
Identities = 151/409 (36%), Positives = 220/409 (53%), Gaps = 4/409 (0%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
RV T T D VD Y PG+ EH F +AK LE + ++++VMREW A+ Q+KN
Sbjct: 287 RVTPTPRPT-DGVDVYFGMPGEIGEHEGFLRAKMDLEERRMRQINEVMREWAMADSQSKN 345
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPKAD++A+ +HFQ +++LE++ + ERQ+LVETH RV A++ND+RR ALE ++ ALQ
Sbjct: 346 LPKADRQALNEHFQSILQTLEEQVSGERQRLVETHATRVIALINDQRRAALEGFLAALQG 405
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
PP+ V L++Y+RAEQK+++HTL+H++HV VDP+KA Q+R QV THL+VI ERMN
Sbjct: 406 DPPQAERVLMALRRYLRAEQKEQRHTLRHYQHVAAVDPEKAQQMRFQVQTHLQVIEERMN 465
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSL LL P +A+E++ ++ ELL E L PS +
Sbjct: 466 QSLGLLDQNPHLAQELRPQIQELLLAEH----------------------LGPSELDAS- 502
Query: 1173 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK 1352
+P + LQP E++ +P P +G T + S K
Sbjct: 503 ----VPGSSSEDKGSLQP------------PESKDDPPVTLP---KGSTDQESSSSGREK 543
Query: 1353 TEEISEVKMDAEFRHDSGYEVHH---QKLVFFAEDVGSNKGAIIG-LXXXXXXXXXXXXX 1520
+ + + G+ H Q+ G ++ A+ G L
Sbjct: 544 LTPLEQYEQKVNASAPRGFPFHSSDIQRDELAPSGTGVSREALSGLLIMGAGGGSLIVLS 603
Query: 1521 XXXXXKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQ 1667
KKK Y +I HGVVEVD +T EE+ L ++Q++GYENPTY+F E+
Sbjct: 604 LLLLRKKKPYGTISHGVVEVDPMLTLEEQQLRELQRHGYENPTYRFLEE 652
Score = 63.2 bits (152), Expect = 7e-10
Identities = 28/51 (54%), Positives = 33/51 (64%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
QE + CE+ H A E CS + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 161 QERMDQCESSTRRHQEAQEACSSQGLILHGSGMLLPCGSDRFRGVEYVCCP 211
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,527,807
Number of extensions: 1468697
Number of successful extensions: 5715
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5636
Number of HSP's successfully gapped: 17
Length of query: 651
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 543
Effective length of database: 12,373,671
Effective search space: 6718903353
Effective search space used: 6718903353
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000562
(1953 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999537.1| amyloid beta A4 protein [Sus scrofa]. 771 0.0
Alignment gi|XP_003358940.1| PREDICTED: amyloid beta A4 protein-like [Sus... 531 e-151
Alignment gi|XP_003357409.1| PREDICTED: amyloid-like protein 2, partial [... 305 6e-83
Alignment gi|XP_003127129.1| PREDICTED: amyloid-like protein 1-like [Sus ... 62 9e-10
>ref|NP_999537.1| amyloid beta A4 protein [Sus scrofa].
Length = 770
Score = 771 bits (1991), Expect = 0.0
Identities = 388/408 (95%), Positives = 390/408 (95%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
++PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN
Sbjct: 363 KLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 422
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA
Sbjct: 423 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 482
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN
Sbjct: 483 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 542
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT
Sbjct: 543 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 602
Query: 1173 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK 1352
TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK
Sbjct: 603 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIK 662
Query: 1353 TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXXXXXXXXXXX 1532
TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGL
Sbjct: 663 TEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVM 722
Query: 1533 XKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 1676
KKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
Sbjct: 723 LKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 770
Score = 149 bits (376), Expect = 5e-36
Identities = 75/131 (57%), Positives = 76/131 (58%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLXXXXXXXX 182
QE +VCETHLHWHTVA ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL
Sbjct: 138 QERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNID 197
Query: 183 XXXXXXXXXXVWWGGADTDYADGSEDKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
VWWGGADTDYADGSEDKVV
Sbjct: 198 SADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVADVEEEEAEDDEDDEDGDEVEEE 257
Query: 363 XXXPYEEATER 395
PYEEATER
Sbjct: 258 AEEPYEEATER 268
>ref|XP_003358940.1| PREDICTED: amyloid beta A4 protein-like [Sus scrofa].
Length = 422
Score = 531 bits (1367), Expect = e-151
Identities = 269/275 (97%), Positives = 271/275 (98%)
Frame = +3
Query: 453 RVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 632
++PTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN
Sbjct: 78 KLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 137
Query: 633 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 812
LPKADKKAVIQ KVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA
Sbjct: 138 LPKADKKAVIQ----KVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQA 193
Query: 813 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 992
VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN
Sbjct: 194 VPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMN 253
Query: 993 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 1172
QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT
Sbjct: 254 QSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKT 313
Query: 1173 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEV 1277
TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEV
Sbjct: 314 TVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEV 348
>ref|XP_003357409.1| PREDICTED: amyloid-like protein 2, partial [Sus scrofa].
Length = 744
Score = 305 bits (781), Expect = 6e-83
Identities = 179/385 (46%), Positives = 237/385 (61%), Gaps = 10/385 (2%)
Frame = +3
Query: 456 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 635
+P T T D VD Y ET D+NEHA FQKAKE+LE +HR RM +V +EWEEAE QAKNL
Sbjct: 371 IPPTPLPTND-VDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNL 429
Query: 636 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAV 815
PKA+++ +IQHFQ V++LE+EAA+E+QQLVETH+ARVEAMLNDRRR+ALENY+ ALQA
Sbjct: 430 PKAERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRVALENYLAALQAD 489
Query: 816 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 995
PPRP + L++YVRAE KDR HT++H++HV VDP+KAAQ++SQVMTHL VI ER NQ
Sbjct: 490 PPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRNQ 549
Query: 996 SLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEP---RISYGNDALMPSLTET 1166
SLSLLY VP VA+EIQ+E+DELLQ+++ D A++ P R+S MP L
Sbjct: 550 SLSLLYKVPYVAQEIQEEIDELLQEQRADMDQFTASISETPVDVRVSSEESDEMPPLYPL 609
Query: 1167 KTTVELLPVNGEFSLDDLQP--WHPFGVDSVPANTEN-----EVEPVDARPAADRGLTTR 1325
LP N +D QP +HP S + E + ++++ D +
Sbjct: 610 H-PFPSLPEN-----EDPQPELYHPVKKGSALGEQDGGLIGAEEKVINSKKKVDENMVID 663
Query: 1326 PGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLXXXXXXXX 1505
+T ++ E+ +AE G E + ED G + A+IGL
Sbjct: 664 --------ETLDVKEMIFNAE--RVGGLEEAPESTGPLREDFGLSSSALIGLLVIAVAIA 713
Query: 1506 XXXXXXXXXXKKKQYTSIHHGVVEV 1580
+K+QY +I HG+VEV
Sbjct: 714 TVIVISLVMLRKRQYGTISHGIVEV 738
Score = 75.9 bits (185), Expect = 8e-14
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
+E VCE H HWHTV E C + L+ YGMLLPCG+D+F G E+VCCP
Sbjct: 154 KERMEVCENHQHWHTVVKEACLTQGMTLYSYGMLLPCGVDQFHGTEYVCCP 204
>ref|XP_003127129.1| PREDICTED: amyloid-like protein 1-like [Sus scrofa].
Length = 181
Score = 62.4 bits (150), Expect = 9e-10
Identities = 27/51 (52%), Positives = 33/51 (64%)
Frame = +3
Query: 3 QETFNVCETHLHWHTVA*ETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 155
QE + CE+ H A E C+ + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 107 QERMDQCESSTRRHQEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 157
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,500,287
Number of extensions: 1338825
Number of successful extensions: 4272
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4219
Number of HSP's successfully gapped: 6
Length of query: 651
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 546
Effective length of database: 8,729,747
Effective search space: 4766441862
Effective search space used: 4766441862
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000562
(1953 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 718 0.0
gb|GL895340.2| Sus scrofa unplaced genomic scaffold ChrUScaf3224 170 2e-39
Sscrofa_Chr09 74 3e-10
>Sscrofa_Chr13
|| Length = 218635234
Score = 718 bits (362), Expect = 0.0
Identities = 374/378 (98%)
Strand = Plus / Minus
Query: 1576 aggttgacgcagctgtgaccccggaggagcgccacctctccaagatgcagcagaatggct 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199291816 aggttgacgcagctgtgaccccggaggagcgccacctctccaagatgcagcagaatggct 199291757
Query: 1636 atgaaaacccaacttacaagttctttgagcagatgcagaactagaccgccgccacagcag 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199291756 atgaaaacccaacttacaagttctttgagcagatgcagaactagaccgccgccacagcag 199291697
Query: 1696 cctctgaagttggacagcaaaaccattgcttcactacccattggtgttcatttatagaat 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199291696 cctctgaagttggacagcaaaaccattgcttcactacccattggtgttcatttatagaat 199291637
Query: 1756 aatggggaaagacacaaacccttctgttttattatttactcatgatcgcctttcagcagc 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199291636 aatggggaaagacacaaacccttctgttttattatttactcatgatcgcctttcagcagc 199291577
Query: 1816 tgtgctgtaacacaagtagatgcctgaacttgaatttatattacgaatcagtaatgaatt 1875
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 199291576 tgtgctgtaacacaagtagatgcctgaacttgaattaatattacgaatcagtaatgtatt 199291517
Query: 1876 ctctccctttacatttccggtctctacactacattattaatgggttttgtgtactgtaaa 1935
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199291516 ctctctctttacatttccggtctctacactacattattaatgggttttgtgtactgtaaa 199291457
Query: 1936 gaatgaacctgtatcaaa 1953
||||||| ||||||||||
Sbjct: 199291456 gaatgaagctgtatcaaa 199291439
Score = 442 bits (223), Expect = e-121
Identities = 223/223 (100%)
Strand = Plus / Minus
Query: 1053 gatgagctgctgcagaaagagcaaaactactcggatgatgtcttggccaacatgatcagc 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199323023 gatgagctgctgcagaaagagcaaaactactcggatgatgtcttggccaacatgatcagc 199322964
Query: 1113 gaaccgaggatcagttatggaaacgatgctctcatgccgtctctgactgaaaccaaaacc 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199322963 gaaccgaggatcagttatggaaacgatgctctcatgccgtctctgactgaaaccaaaacc 199322904
Query: 1173 accgtggagcttcttcctgtgaatggagagttcagcctggatgatctccagccctggcat 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199322903 accgtggagcttcttcctgtgaatggagagttcagcctggatgatctccagccctggcat 199322844
Query: 1233 ccttttggggtagactctgtgcctgccaacacagaaaatgaag 1275
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199322843 ccttttggggtagactctgtgcctgccaacacagaaaatgaag 199322801
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 58 agacctgtagtgagaagagtacgaacttgcatgactatggcatgttgctgccctgtggaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199474141 agacctgtagtgagaagagtacgaacttgcatgactatggcatgttgctgccctgtggaa 199474082
Query: 118 ttgacaagttccgaggggtggagtttgtgtgttgcccactggccgaggaaagtgacaata 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199474081 ttgacaagttccgaggggtggagtttgtgtgttgcccactggccgaggaaagtgacaata 199474022
Query: 178 tcgactcagcagatgcagaagaggatgactcggacgtctggtggggtggagcagatacag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199474021 tcgactcagcagatgcagaagaggatgactcggacgtctggtggggtggagcagatacag 199473962
Query: 238 actatgcagatggcag 253
||||||||||||||||
Sbjct: 199473961 actatgcagatggcag 199473946
Score = 325 bits (164), Expect = 5e-86
Identities = 167/168 (99%)
Strand = Plus / Minus
Query: 657 gtgatccagcatttccaggagaaagtggagtctctggagcaggaagcagccaacgagagg 716
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199380167 gtgatgcagcatttccaggagaaagtggagtctctggagcaggaagcagccaacgagagg 199380108
Query: 717 cagcagttggtggagacgcacatggccagagtggaggccatgcttaacgaccgccggcgc 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199380107 cagcagttggtggagacgcacatggccagagtggaggccatgcttaacgaccgccggcgc 199380048
Query: 777 ctggccctggagaattacatcacggctcttcaggctgttcctcctcgg 824
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199380047 ctggccctggagaattacatcacggctcttcaggctgttcctcctcgg 199380000
Score = 297 bits (150), Expect = 1e-77
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 1430 ggtgttcttcgcagaagatgtgggttcaaacaaaggtgccatcattggactcatggtggg 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199302682 ggtgttcttcgcagaagatgtgggttcaaacaaaggtgccatcattggactcatggtggg 199302623
Query: 1490 tggtgttgtcatagcaaccgtgattgtcatcaccttagtgatgctgaagaagaaacagta 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199302622 tggtgttgtcatagcaaccgtgattgtcatcaccttagtgatgctgaagaagaaacagta 199302563
Query: 1550 cacatccatccatcacggtgtggtggaggt 1579
||||||||||||||||||||||||||||||
Sbjct: 199302562 cacatccatccatcacggtgtggtggaggt 199302533
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 455 agttcctacaacagcagccagcaccccagatgccgttgacaagtatcttgagacacctgg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199385123 agttcctacaacagcagccagcaccccagatgccgttgacaagtatcttgagacacctgg 199385064
Query: 515 agatgagaacgaacatgcgcatttccagaaagccaaagagaggctggaggccaagcaccg 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199385063 agatgagaacgaacatgcgcatttccagaaagccaaagagaggctggaggccaagcaccg 199385004
Query: 575 cgagagaatgtcccaggt 592
||||||||||||||||||
Sbjct: 199385003 cgagagaatgtcccaggt 199384986
Score = 262 bits (132), Expect = 7e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 824 gcctcgtcatgtgttcaacatgctcaagaagtatgtccgtgccgaacagaaagacagaca 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199362640 gcctcgtcatgtgttcaacatgctcaagaagtatgtccgtgccgaacagaaagacagaca 199362581
Query: 884 gcacaccctaaagcattttgaacacgttcgcatggtagatccaaagaaagctgctcagat 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199362580 gcacaccctaaagcattttgaacacgttcgcatggtagatccaaagaaagctgctcagat 199362521
Query: 944 ccgatcccaggt 955
||||||||||||
Sbjct: 199362520 ccgatcccaggt 199362509
Score = 202 bits (102), Expect = 5e-49
Identities = 105/106 (99%)
Strand = Plus / Minus
Query: 1327 caggttccgggttgaccaacatcaagacggaagagatctctgaagtgaagatggatgcgg 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199306512 caggttccgggttgaccaacatcaagacggaagagatctctgaagtgaagatggatgcgg 199306453
Query: 1387 agttccgacacgattcgggctatgaggttcatcaccaaaaactggt 1432
|||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 199306452 agttccgacacgattcaggctatgaggttcatcaccaaaaactggt 199306407
Score = 198 bits (100), Expect = 8e-48
Identities = 106/108 (98%)
Strand = Plus / Minus
Query: 951 caggttatgacacacctccgtgtgatttacgagcgcatgaaccagtctctctccctgctc 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199361680 caggttatgacacacctccgtgtgatttacgagcgcatgaaccagtctctctccctgctc 199361621
Query: 1011 tacaacgttcctgctgtggccgaggaaattcaggatgaagttgatgag 1058
|||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 199361620 tacaacgttcctgctgtggctgaggaaattcaggatgaagttggtgag 199361573
Score = 155 bits (78), Expect = 1e-34
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 588 caggtcatgagagagtgggaagaggcagaacgtcaagcaaagaacttgcctaaagctgat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199380932 caggtcatgagagagtgggaagaggcagaacgtcaagcaaagaacttgcctaaagctgat 199380873
Query: 648 aagaaagcagtgatccag 665
||||||||||||||||||
Sbjct: 199380872 aagaaagcagtgatccag 199380855
Score = 115 bits (58), Expect = 9e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 1274 agtcgagcctgttgacgcccgccctgcagccgaccgaggactgaccactcgaccaggt 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199313986 agtcgagcctgttgacgcccgccctgcagccgaccgaggactgaccactcgaccaggt 199313929
Score = 79.8 bits (40), Expect = 5e-12
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 16 atgtttgcgaaacccaccttcactggcacactgtggcctaagag 59
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 199476036 atgtttgcgaaacccaccttcactggcacactgtggccaaagag 199475993
>gb|GL895340.2| Sus scrofa unplaced genomic scaffold ChrUScaf3224
Length = 24765
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 507 acacctggagatgagaacgaacatgcgcatttccagaaagccaaagagaggctggaggcc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10648 acacctggagatgagaacgaacatgcgcatttccagaaagccaaagagaggctggaggcc 10707
Query: 567 aagcaccgcgagagaatgtcccaggt 592
||||||||||||||||||||||||||
Sbjct: 10708 aagcaccgcgagagaatgtcccaggt 10733
Score = 63.9 bits (32), Expect = 3e-07
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 455 agttcctacaacagcagccagcaccccagatgccgt 490
||||||||||||||||||||||||||| ||||||||
Sbjct: 10512 agttcctacaacagcagccagcaccccggatgccgt 10547
>Sscrofa_Chr09
|| Length = 153670197
Score = 73.8 bits (37), Expect = 3e-10
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 690 ctggagcaggaagcagccaacgagaggcagcagttggtggagacgcacatggccagagtg 749
|||||| |||||||||||| ||||| ||||||| ||||||| || ||| | || | |||
Sbjct: 63020480 ctggagaaggaagcagccagcgagaagcagcagctggtggaaacccacctcgcgcgggtg 63020539
Query: 750 gaggccatgcttaacgaccgccggcgcctggccctggagaa 790
||||||||||| ||||||||||| || |||| ||||||||
Sbjct: 63020540 gaggccatgctcaacgaccgccgccgggtggcgctggagaa 63020580
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,516,344
Number of extensions: 335
Number of successful extensions: 335
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 15
Length of query: 1953
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1931
Effective length of database: 2,808,408,574
Effective search space: 5423036956394
Effective search space used: 5423036956394
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)