Animal-Genome cDNA 20110601C-000575


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000575
         (997 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001015562.1| adaptin ear-binding coat-associated protein ...   470   e-132
Alignment   gi|NP_001029383.1| adaptin ear-binding coat-associated protein ...   298   6e-81

>ref|NP_001015562.1| adaptin ear-binding coat-associated protein 2 [Bos taurus].
          Length = 266

 Score =  470 bits (1209), Expect = e-132
 Identities = 231/266 (86%), Positives = 236/266 (88%)
 Frame = +3

Query: 63  MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLE 242
           MEE  YESVLCVKP+VHVYRIPPRATNRGYRA+EWQLDQPSWSGRLRITAKGQVAYIKLE
Sbjct: 1   MEEAEYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLE 60

Query: 243 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 422
           DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV
Sbjct: 61  DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 120

Query: 423 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPA 602
           ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIA+MKKK+GAAGTPRARP 
Sbjct: 121 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIASMKKKDGAAGTPRARPT 180

Query: 603 XXXXXXXXXXXXXXXXXXXXAHPGEHLSVGGSVIQPAVVPSSGGATVSWPQPKPATAATA 782
                                  GEHLSVGGSV+QPAV PSSGGATVSWPQPKPAT ATA
Sbjct: 181 STGGLSLLPPPPGAKTAALAPLSGEHLSVGGSVVQPAVSPSSGGATVSWPQPKPATTATA 240

Query: 783 DIWGDFTKSTGSTSSQPQPGTGWVQF 860
           DIWGDFTKSTGSTSSQ QPG GWVQF
Sbjct: 241 DIWGDFTKSTGSTSSQTQPGAGWVQF 266


>ref|NP_001029383.1| adaptin ear-binding coat-associated protein 1 [Bos taurus].
          Length = 275

 Score =  298 bits (762), Expect = 6e-81
 Identities = 150/274 (54%), Positives = 186/274 (67%), Gaps = 13/274 (4%)
 Frame = +3

Query: 78  YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSG 257
           YESVLCVKP+V VYRIPPRA+NRGYRAS+W+LDQP W+GRLRIT+KG+VAYIKLED+ SG
Sbjct: 7   YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDKVSG 66

Query: 258 ELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDH 437
           ELFAQAPV+Q+PG AVE+VTDSSRYFVIRI+DG GR AFIGIGF DRGDAFDFNV+LQDH
Sbjct: 67  ELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFSDRGDAFDFNVSLQDH 126

Query: 438 FKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPAXXXXX 617
           FKWVKQ+ E +K++Q  D  PKLDL FKEGQTIKL+I N+  K+G    P+         
Sbjct: 127 FKWVKQESEISKESQEMDSRPKLDLGFKEGQTIKLSIGNITTKKGGTSKPKTAGTGGLSL 186

Query: 618 XXXXXXXXXXXXXXXAHPGEHLSVGGSVIQPAVVPSSGG-------------ATVSWPQP 758
                            P   +++   V  P +  S+ G             A ++ P P
Sbjct: 187 LPPPPGGKVTIPP----PSSSVAISNHVTPPPIPKSNHGGSDADILLDLDSPAPITTPAP 242

Query: 759 KPATAATADIWGDFTKSTGSTSSQPQPGTGWVQF 860
            P +A+  D+WGDF+ ++ S  +Q    + WVQF
Sbjct: 243 APVSASN-DLWGDFSTASSSVPNQAPQPSNWVQF 275


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,573,802
Number of extensions: 1339563
Number of successful extensions: 6995
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6928
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000575
         (997 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535393.2| PREDICTED: similar to Adaptin ear-binding coat-...   464   e-131
Alignment   gi|XP_864756.1| PREDICTED: similar to Adaptin ear-binding coat-...   402   e-112
Alignment   gi|XP_543832.2| PREDICTED: similar to adaptin-ear-binding coat-...   297   1e-80
Alignment   gi|XP_864733.1| PREDICTED: similar to Adaptin ear-binding coat-...   207   2e-53
Alignment   gi|XP_850410.1| PREDICTED: similar to Adaptin ear-binding coat-...   200   2e-51
Alignment   gi|XP_867045.1| PREDICTED: similar to adaptin-ear-binding coat-...   169   4e-42

>ref|XP_535393.2| PREDICTED: similar to Adaptin ear-binding coat-associated protein 2
           (NECAP-2) isoform 2 [Canis familiaris].
          Length = 266

 Score =  464 bits (1195), Expect = e-131
 Identities = 229/266 (86%), Positives = 231/266 (86%)
 Frame = +3

Query: 63  MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLE 242
           MEEG YESVLCVKPEVHVYRIPPRATNRGYRA+EWQLDQPSWSGRLRITAKGQVAYIKLE
Sbjct: 1   MEEGEYESVLCVKPEVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLE 60

Query: 243 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 422
           DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV
Sbjct: 61  DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 120

Query: 423 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPA 602
           ALQDHFKWVKQQCEFAKQAQNPDQGPKLDL FKEGQTIKLNIANMKKKEGAAGTPRARPA
Sbjct: 121 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGTPRARPA 180

Query: 603 XXXXXXXXXXXXXXXXXXXXAHPGEHLSVGGSVIQPAVVPSSGGATVSWPQPKPATAATA 782
                                 PGE LS G  V+Q AV PSSGGAT SWPQPKPAT AT 
Sbjct: 181 STGGLSLLPPPPGGKTSTLIPPPGEQLSGGAPVVQTAVAPSSGGATTSWPQPKPATTATT 240

Query: 783 DIWGDFTKSTGSTSSQPQPGTGWVQF 860
           DIWGDFTKS GSTSSQ QPGTGWVQF
Sbjct: 241 DIWGDFTKSAGSTSSQTQPGTGWVQF 266


>ref|XP_864756.1| PREDICTED: similar to Adaptin ear-binding coat-associated protein 2
           (NECAP-2) isoform 4 [Canis familiaris].
          Length = 240

 Score =  402 bits (1033), Expect = e-112
 Identities = 199/235 (84%), Positives = 201/235 (85%)
 Frame = +3

Query: 156 ASEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYF 335
           A+EWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYF
Sbjct: 6   AAEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYF 65

Query: 336 VIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLS 515
           VIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDL 
Sbjct: 66  VIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLG 125

Query: 516 FKEGQTIKLNIANMKKKEGAAGTPRARPAXXXXXXXXXXXXXXXXXXXXAHPGEHLSVGG 695
           FKEGQTIKLNIANMKKKEGAAGTPRARPA                      PGE LS G 
Sbjct: 126 FKEGQTIKLNIANMKKKEGAAGTPRARPASTGGLSLLPPPPGGKTSTLIPPPGEQLSGGA 185

Query: 696 SVIQPAVVPSSGGATVSWPQPKPATAATADIWGDFTKSTGSTSSQPQPGTGWVQF 860
            V+Q AV PSSGGAT SWPQPKPAT AT DIWGDFTKS GSTSSQ QPGTGWVQF
Sbjct: 186 PVVQTAVAPSSGGATTSWPQPKPATTATTDIWGDFTKSAGSTSSQTQPGTGWVQF 240


>ref|XP_543832.2| PREDICTED: similar to adaptin-ear-binding coat-associated protein 1
           isoform 1 [Canis familiaris].
          Length = 275

 Score =  297 bits (760), Expect = 1e-80
 Identities = 150/273 (54%), Positives = 187/273 (68%), Gaps = 12/273 (4%)
 Frame = +3

Query: 78  YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSG 257
           YESVLCVKP+V VYRIPPRA+NRGYRAS+W+LDQP W+GRLRIT+KG++AYIKLED+ SG
Sbjct: 7   YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSG 66

Query: 258 ELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDH 437
           ELFAQAPV+Q+PG AVE+VTDSSRYFVIRI+DG GR AFIGIGF DRGDAFDFNV+LQDH
Sbjct: 67  ELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDH 126

Query: 438 FKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPAXXXXX 617
           FKWVKQ+ E +K++Q  D  PKLDL FKEGQTIKL+I N+  K+G    P+   A     
Sbjct: 127 FKWVKQESEISKESQEMDNRPKLDLGFKEGQTIKLSIGNITTKKGGVSKPKTTGAGGLSL 186

Query: 618 XXXXXXXXXXXXXXXAHPGEHLSVGGSVIQPAVVPSSGGAT-------VSWPQPKPATA- 773
                            P   +++   V  P +  S+ G +       +  P P P +A 
Sbjct: 187 LPPPPGGKVTIPP----PSSSVAISNHVTPPPIPKSNHGGSDADILLDLDSPAPVPTSAP 242

Query: 774 ----ATADIWGDFTKSTGSTSSQPQPGTGWVQF 860
               A+ D+WGDF+ ++ S  +Q    + WVQF
Sbjct: 243 APVSASNDLWGDFSTASSSVPNQAPQPSNWVQF 275


>ref|XP_864733.1| PREDICTED: similar to Adaptin ear-binding coat-associated protein 2
           (NECAP-2) isoform 3 [Canis familiaris].
          Length = 106

 Score =  207 bits (526), Expect = 2e-53
 Identities = 104/127 (81%), Positives = 105/127 (82%)
 Frame = +3

Query: 63  MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLE 242
           MEEG YESVLCVKPEVHVYRIPPRATNRGYRA+EWQLDQPSWSG                
Sbjct: 1   MEEGEYESVLCVKPEVHVYRIPPRATNRGYRAAEWQLDQPSWSG---------------- 44

Query: 243 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 422
                ELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV
Sbjct: 45  -----ELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 99

Query: 423 ALQDHFK 443
           ALQDHFK
Sbjct: 100 ALQDHFK 106


>ref|XP_850410.1| PREDICTED: similar to Adaptin ear-binding coat-associated protein 2
           (NECAP-2) [Canis familiaris].
          Length = 127

 Score =  200 bits (509), Expect = 2e-51
 Identities = 103/132 (78%), Positives = 110/132 (83%)
 Frame = +3

Query: 63  MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLE 242
           MEEG  ESV CV+PE           +RGYRA+EWQLDQPS SGRLRITAKG+VA+IKLE
Sbjct: 1   MEEGESESVPCVRPE-------GARLHRGYRAAEWQLDQPSRSGRLRITAKGRVAFIKLE 53

Query: 243 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 422
           D TSGELFAQAPVDQFPG A ESVT SSRY VIRIEDGNG RAF+GIGFGDRGDAFDFNV
Sbjct: 54  DGTSGELFAQAPVDQFPGPAAESVTHSSRYSVIRIEDGNGPRAFVGIGFGDRGDAFDFNV 113

Query: 423 ALQDHFKWVKQQ 458
           ALQDH +WVKQQ
Sbjct: 114 ALQDHAEWVKQQ 125


>ref|XP_867045.1| PREDICTED: similar to adaptin-ear-binding coat-associated protein 1
           isoform 2 [Canis familiaris].
          Length = 102

 Score =  169 bits (428), Expect = 4e-42
 Identities = 77/95 (81%), Positives = 90/95 (94%)
 Frame = +3

Query: 78  YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSG 257
           YESVLCVKP+V VYRIPPRA+NRGYRAS+W+LDQP W+GRLRIT+KG++AYIKLED+ SG
Sbjct: 7   YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSG 66

Query: 258 ELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG 362
           ELFAQAPV+Q+PG AVE+VTDSSRYFVIRI+DG G
Sbjct: 67  ELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG 101


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,517,488
Number of extensions: 1389505
Number of successful extensions: 6920
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6853
Number of HSP's successfully gapped: 6
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000575
         (997 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_060560.1| adaptin ear-binding coat-associated protein 2 i...   457   e-129
Alignment   gi|NP_001138750.1| adaptin ear-binding coat-associated protein ...   395   e-110
Alignment   gi|NP_001138749.1| adaptin ear-binding coat-associated protein ...   382   e-108
Alignment   gi|NP_056324.2| adaptin ear-binding coat-associated protein 1 [...   295   3e-80

>ref|NP_060560.1| adaptin ear-binding coat-associated protein 2 isoform 1 [Homo
           sapiens].
          Length = 263

 Score =  457 bits (1176), Expect = e-129
 Identities = 225/266 (84%), Positives = 231/266 (86%)
 Frame = +3

Query: 63  MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLE 242
           MEE GYESVLCVKP+VHVYRIPPRATNRGYRA+EWQLDQPSWSGRLRITAKGQ+AYIKLE
Sbjct: 1   MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLE 60

Query: 243 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 422
           DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV
Sbjct: 61  DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 120

Query: 423 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPA 602
           ALQDHFKWVKQQCEFAKQAQNPDQGPKLDL FKEGQTIKLNIANMKKKEGAAG PR RPA
Sbjct: 121 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPA 180

Query: 603 XXXXXXXXXXXXXXXXXXXXAHPGEHLSVGGSVIQPAVVPSSGGATVSWPQPKPATAATA 782
                                 PGE L+VGGS++QPAV PSSGGA V WPQP P   ATA
Sbjct: 181 STGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSGGAPVPWPQPNP---ATA 237

Query: 783 DIWGDFTKSTGSTSSQPQPGTGWVQF 860
           DIWGDFTKSTGSTSSQ QPGTGWVQF
Sbjct: 238 DIWGDFTKSTGSTSSQTQPGTGWVQF 263


>ref|NP_001138750.1| adaptin ear-binding coat-associated protein 2 isoform 3 [Homo
           sapiens].
          Length = 237

 Score =  395 bits (1015), Expect = e-110
 Identities = 196/235 (83%), Positives = 201/235 (85%)
 Frame = +3

Query: 156 ASEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYF 335
           A+EWQLDQPSWSGRLRITAKGQ+AYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYF
Sbjct: 6   AAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYF 65

Query: 336 VIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLS 515
           VIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDL 
Sbjct: 66  VIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLG 125

Query: 516 FKEGQTIKLNIANMKKKEGAAGTPRARPAXXXXXXXXXXXXXXXXXXXXAHPGEHLSVGG 695
           FKEGQTIKLNIANMKKKEGAAG PR RPA                      PGE L+VGG
Sbjct: 126 FKEGQTIKLNIANMKKKEGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGG 185

Query: 696 SVIQPAVVPSSGGATVSWPQPKPATAATADIWGDFTKSTGSTSSQPQPGTGWVQF 860
           S++QPAV PSSGGA V WPQP P   ATADIWGDFTKSTGSTSSQ QPGTGWVQF
Sbjct: 186 SLVQPAVAPSSGGAPVPWPQPNP---ATADIWGDFTKSTGSTSSQTQPGTGWVQF 237


>ref|NP_001138749.1| adaptin ear-binding coat-associated protein 2 isoform 2 [Homo
           sapiens].
          Length = 273

 Score =  382 bits (982), Expect(2) = e-108
 Identities = 188/222 (84%), Positives = 194/222 (87%)
 Frame = +3

Query: 63  MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLE 242
           MEE GYESVLCVKP+VHVYRIPPRATNRGYRA+EWQLDQPSWSGRLRITAKGQ+AYIKLE
Sbjct: 1   MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLE 60

Query: 243 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 422
           DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV
Sbjct: 61  DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 120

Query: 423 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPA 602
           ALQDHFKWVKQQCEFAKQAQNPDQGPKLDL FKEGQTIKLNIANMKKKEGAAG PR RPA
Sbjct: 121 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPA 180

Query: 603 XXXXXXXXXXXXXXXXXXXXAHPGEHLSVGGSVIQPAVVPSS 728
                                 PGE L+VGGS++QPAV PSS
Sbjct: 181 STGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSS 222



 Score = 28.5 bits (62), Expect(2) = e-108
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 817 RLPASLSQAPAGFSSDQSTTL-SCNFWKGATSSGLKKEGEAFPGQPL 954
           +LPA  SQA AG SSD ST        K     G +KE EA    P+
Sbjct: 224 QLPARPSQAQAGSSSDLSTVFPHVTSGKALPHLGQRKEDEALLSWPV 270


>ref|NP_056324.2| adaptin ear-binding coat-associated protein 1 [Homo sapiens].
          Length = 275

 Score =  295 bits (756), Expect = 3e-80
 Identities = 151/274 (55%), Positives = 184/274 (67%), Gaps = 13/274 (4%)
 Frame = +3

Query: 78  YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSG 257
           YESVLCVKP+V VYRIPPRA+NRGYRAS+W+LDQP W+GRLRIT+KG+ AYIKLED+ SG
Sbjct: 7   YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSG 66

Query: 258 ELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDH 437
           ELFAQAPV+Q+PG AVE+VTDSSRYFVIRI+DG GR AFIGIGF DRGDAFDFNV+LQDH
Sbjct: 67  ELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDH 126

Query: 438 FKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPAXXXXX 617
           FKWVKQ+ E +K++Q  D  PKLDL FKEGQTIKL I N+  K+G A  PR         
Sbjct: 127 FKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLCIGNITNKKGGASKPRTARGGGLSL 186

Query: 618 XXXXXXXXXXXXXXXAHPGEHLSVGGSVIQPAVVPSSGG-------------ATVSWPQP 758
                            P   +++   V  P +  S+ G             A V+ P P
Sbjct: 187 LPPPPGGKVTIPP----PSSSVAISNHVTPPPIPKSNHGGSDADILLDLDSPAPVTTPAP 242

Query: 759 KPATAATADIWGDFTKSTGSTSSQPQPGTGWVQF 860
            P + +  D+WGDF+ ++ S  +Q    + WVQF
Sbjct: 243 TPVSVSN-DLWGDFSTASSSVPNQAPQPSNWVQF 275


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,492,291
Number of extensions: 1346300
Number of successful extensions: 6677
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6601
Number of HSP's successfully gapped: 5
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000575
         (997 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079659.1| adaptin ear-binding coat-associated protein 2 [...   452   e-127
Alignment   gi|NP_080543.2| adaptin ear-binding coat-associated protein 1 [...   298   6e-81

>ref|NP_079659.1| adaptin ear-binding coat-associated protein 2 [Mus musculus].
          Length = 266

 Score =  452 bits (1164), Expect = e-127
 Identities = 222/266 (83%), Positives = 230/266 (86%)
 Frame = +3

Query: 63  MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLE 242
           MEE  YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKG+VAYIKLE
Sbjct: 1   MEESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLE 60

Query: 243 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 422
           DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIG+GFGDRGDAFDFNV
Sbjct: 61  DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDFNV 120

Query: 423 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPA 602
           ALQDHFKWVKQQCEFAKQAQNPD+GPKLDL FK+GQTIK+NIANM+KKEGAAGTPRARP 
Sbjct: 121 ALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKDGQTIKINIANMRKKEGAAGTPRARPT 180

Query: 603 XXXXXXXXXXXXXXXXXXXXAHPGEHLSVGGSVIQPAVVPSSGGATVSWPQPKPATAATA 782
                                  GE LSVGGS++QPAVV  SGGAT  WPQ KPA AATA
Sbjct: 181 SAGGLSLLPPPPGGKSSTVIPPSGEQLSVGGSLVQPAVVSGSGGATELWPQSKPAAAATA 240

Query: 783 DIWGDFTKSTGSTSSQPQPGTGWVQF 860
           DIWGDFTKSTGS SSQ QPGTGWVQF
Sbjct: 241 DIWGDFTKSTGSPSSQSQPGTGWVQF 266


>ref|NP_080543.2| adaptin ear-binding coat-associated protein 1 [Mus musculus].
          Length = 275

 Score =  298 bits (762), Expect = 6e-81
 Identities = 152/274 (55%), Positives = 186/274 (67%), Gaps = 13/274 (4%)
 Frame = +3

Query: 78  YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSG 257
           YESVLCVKP+V VYRIPPRA+NRGYRAS+W+LDQP W+GRLRIT+KG++AYIKLED+ SG
Sbjct: 7   YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSG 66

Query: 258 ELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDH 437
           ELFAQAPV+Q+PG AVE+VTDSSRYFVIRI+DG GR AFIGIGF DRGDAFDFNV+LQDH
Sbjct: 67  ELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDH 126

Query: 438 FKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPAXXXXX 617
           FKWVKQ+ E +K++Q  D  PKLDL FKEGQTIKL+I N+  K+G A  PRA        
Sbjct: 127 FKWVKQETEISKESQEMDNRPKLDLGFKEGQTIKLSIGNITAKKGGASKPRASGTGGLSL 186

Query: 618 XXXXXXXXXXXXXXXAHPGEHLSVGGSVIQPAVVPSSGG-------------ATVSWPQP 758
                            P   +++   V  P +  S+ G             A VS   P
Sbjct: 187 LPPPPGGKVTIPP----PSSSVAISNHVTPPPIPKSNHGGNDSDILLDLDSPAPVSTSAP 242

Query: 759 KPATAATADIWGDFTKSTGSTSSQPQPGTGWVQF 860
            P + +  D+WGDF+ ++ S  +Q    + WVQF
Sbjct: 243 APVSTSN-DLWGDFSTASSSVPNQAPQPSNWVQF 275


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,573,659
Number of extensions: 1099420
Number of successful extensions: 5491
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5254
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000575
         (997 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003127690.1| PREDICTED: adaptin ear-binding coat-associat...   501   e-142
Alignment   gi|XP_003362173.1| PREDICTED: adaptin ear-binding coat-associat...    62   6e-10

>ref|XP_003127690.1| PREDICTED: adaptin ear-binding coat-associated protein 2-like [Sus
           scrofa].
          Length = 266

 Score =  501 bits (1289), Expect = e-142
 Identities = 246/266 (92%), Positives = 246/266 (92%)
 Frame = +3

Query: 63  MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLE 242
           MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLE
Sbjct: 1   MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLE 60

Query: 243 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 422
           DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV
Sbjct: 61  DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 120

Query: 423 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPA 602
           ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPA
Sbjct: 121 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPA 180

Query: 603 XXXXXXXXXXXXXXXXXXXXAHPGEHLSVGGSVIQPAVVPSSGGATVSWPQPKPATAATA 782
                               AHPGEHLSVGGSVIQPAVVPSSGGATVSWPQPKPATAATA
Sbjct: 181 STGGLSLLPPPPGGRTSTLTAHPGEHLSVGGSVIQPAVVPSSGGATVSWPQPKPATAATA 240

Query: 783 DIWGDFTKSTGSTSSQPQPGTGWVQF 860
           DIWGDFTKSTGSTSSQPQPGTGWVQF
Sbjct: 241 DIWGDFTKSTGSTSSQPQPGTGWVQF 266


>ref|XP_003362173.1| PREDICTED: adaptin ear-binding coat-associated protein 1-like,
           partial [Sus scrofa].
          Length = 125

 Score = 61.6 bits (148), Expect = 6e-10
 Identities = 25/34 (73%), Positives = 32/34 (94%)
 Frame = +3

Query: 156 ASEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSG 257
           AS+W+LDQP W+GRLRIT+KG++AYIKLED+ SG
Sbjct: 1   ASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSG 34


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,909,704
Number of extensions: 869878
Number of successful extensions: 4419
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4362
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000575
         (997 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         319   2e-84

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  319 bits (161), Expect = 2e-84
 Identities = 180/185 (97%), Gaps = 1/185 (0%)
 Strand = Plus / Plus

                                                                            
Query: 814      ggtcgacttccagccagcctcagccaggcaccggctgggttcagttctgaccagagcaca 873
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69854841 ggtcgacttccagccagcctcagccaggcaccggctgggttcagttctgaccagagcaca 69854900

                                                                            
Query: 874      actctgtcgtgtaacttctggaaaggagccacctcatctgggctgaa-gaaagagggtga 932
                ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 69854901 actctgtcgtgtaacttctggaaaggagccacctcatctgggctgaaggaaggagggtga 69854960

                                                                            
Query: 933      agcattccctggccagcctcttctttgaagatgacgctcctcccttccttaactgaactc 992
                |||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 69854961 agcagtccctggccagcctcttctttggagatgacgctcctcccttccttacctgaactc 69855020

                     
Query: 993      tcttg 997
                |||||
Sbjct: 69855021 tcttg 69855025



 Score =  315 bits (159), Expect = 3e-83
 Identities = 173/180 (96%)
 Strand = Plus / Plus

                                                                            
Query: 551      gaacatgaagaagaaggaaggagcagctgggactccccgagcccggcccgccagcacagg 610
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69849410 gaacatgaagaagaaggaaggagcagctgggactccccgagcccggcccgccagcacagg 69849469

                                                                            
Query: 611      aggcctgagcctgcttccccctcccccnnnnnnnagaacctctaccctgactgcgcaccc 670
                |||||||||||||||||||||||||||       ||||||||||||||||||||||||||
Sbjct: 69849470 aggcctgagcctgcttccccctcccccgggggggagaacctctaccctgactgcgcaccc 69849529

                                                                            
Query: 671      tggggagcacttgtccgtggggggctctgtgatccagccagcagttgttcccagttcagg 730
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69849530 tggggagcacttgtccgtggggggctctgtgatccagccagcagttgttcccagttcagg 69849589



 Score =  305 bits (154), Expect = 2e-80
 Identities = 154/154 (100%)
 Strand = Plus / Plus

                                                                            
Query: 2        gcgcggcttcctccccgccgcggggaaggagccggaagtcccgcggtctcccggcgtcga 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69840066 gcgcggcttcctccccgccgcggggaaggagccggaagtcccgcggtctcccggcgtcga 69840125

                                                                            
Query: 62       gatggaggaaggaggctacgagtcggttctctgtgtcaagcctgaggtgcacgtctaccg 121
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69840126 gatggaggaaggaggctacgagtcggttctctgtgtcaagcctgaggtgcacgtctaccg 69840185

                                                  
Query: 122      catcccgccgcgggccaccaaccgtggttacagg 155
                ||||||||||||||||||||||||||||||||||
Sbjct: 69840186 catcccgccgcgggccaccaaccgtggttacagg 69840219



 Score =  218 bits (110), Expect = 4e-54
 Identities = 110/110 (100%)
 Strand = Plus / Plus

                                                                            
Query: 252      tcaggggagctttttgctcaggcccctgtggatcagtttcctggcacagcggtggagagt 311
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69844957 tcaggggagctttttgctcaggcccctgtggatcagtttcctggcacagcggtggagagt 69845016

                                                                  
Query: 312      gtgacggattccagcaggtacttcgttatccgcattgaagacggaaatgg 361
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69845017 gtgacggattccagcaggtacttcgttatccgcattgaagacggaaatgg 69845066



 Score =  216 bits (109), Expect = 2e-53
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                            
Query: 443      atgggtgaagcagcagtgtgaatttgcaaaacaagcccagaacccagaccaaggccccaa 502
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69846423 atgggtgaagcagcagtgtgaatttgcaaaacaagcccagaacccagaccaaggccccaa 69846482

                                                                 
Query: 503      gctggacctaagcttcaaggagggccagaccatcaagctcaacattgcg 551
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69846483 gctggacctaagcttcaaggagggccagaccatcaagctcaacattgcg 69846531



 Score =  206 bits (104), Expect = 2e-50
 Identities = 104/104 (100%)
 Strand = Plus / Plus

                                                                            
Query: 153      agggcttcggagtggcagctggaccagccatcatggagtggccggctgcggatcactgca 212
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69842294 agggcttcggagtggcagctggaccagccatcatggagtggccggctgcggatcactgca 69842353

                                                            
Query: 213      aaagggcaggtggcctacatcaagctcgaggacaggacctcagg 256
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69842354 aaagggcaggtggcctacatcaagctcgaggacaggacctcagg 69842397



 Score =  176 bits (89), Expect = 2e-41
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                            
Query: 728      aggaggtgccactgtgtcctggccgcagcccaagcctgccactgctgccaccgctgacat 787
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69853290 aggaggtgccactgtgtcctggccgcagcccaagcctgccactgctgccaccgctgacat 69853349

                                             
Query: 788      ctggggagactttaccaaatccacagggt 816
                |||||||||||||||||||||||||||||
Sbjct: 69853350 ctggggagactttaccaaatccacagggt 69853378



 Score =  165 bits (83), Expect = 6e-38
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                            
Query: 360      gggcgacgggcatttattggaattggcttcggggaccgaggtgacgcctttgacttcaat 419
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69845148 gggcgacgggcatttattggaattggcttcggggaccgaggtgacgcctttgacttcaat 69845207

                                       
Query: 420      gttgccttgcaggaccatttcaa 442
                |||||||||||||||||||||||
Sbjct: 69845208 gttgccttgcaggaccatttcaa 69845230


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,599,428
Number of extensions: 168
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 8
Length of query: 997
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 976
Effective length of database: 2,808,413,156
Effective search space: 2741011240256
Effective search space used: 2741011240256
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)