Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000577
(1493 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776889.1| SPARC [Bos taurus]. 547 e-155
Alignment gi|NP_001029474.1| SPARC-like protein 1 [Bos taurus]. 318 8e-87
Alignment gi|NP_001094585.1| testican-2 [Bos taurus]. 54 4e-07
Alignment gi|NP_001069178.1| follistatin-related protein 3 precursor [Bos... 53 8e-07
Alignment gi|NP_786995.2| follistatin precursor [Bos taurus]. 51 3e-06
>ref|NP_776889.1| SPARC [Bos taurus].
Length = 304
Score = 547 bits (1409), Expect = e-155
Identities = 261/304 (85%), Positives = 266/304 (87%), Gaps = 4/304 (1%)
Frame = +3
Query: 111 MRAWIFFLLCLAGKALAAPQQEALPDXXXXXXXXXXXXXX---GANPVQXXXXXXXXXXX 281
MRAWIFFLLCLAG+ALAAPQQEALPD GANPVQ
Sbjct: 1 MRAWIFFLLCLAGRALAAPQQEALPDETEVVEETVAEVAEVPVGANPVQVEVGEFDDGAE 60
Query: 282 XXXXXXXXXNPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFD 461
NPCQNHHCKHGKVCELDENN+PMCVCQDPTSCPAPIGEFEKVCSNDNKTFD
Sbjct: 61 ETEEEVVAENPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFD 120
Query: 462 SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE 641
SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE
Sbjct: 121 SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE 180
Query: 642 RDENNNLLTEKQKLRVKKIHENEKRLEAG-DHPVELLARDFEKNYNMYIFPVHWQFGQLD 818
RDE+NNLLTEKQKLRVKKIHENEKRLEAG DHPVELLARDFEKNYNMYIFPVHWQFGQLD
Sbjct: 181 RDEDNNLLTEKQKLRVKKIHENEKRLEAGCDHPVELLARDFEKNYNMYIFPVHWQFGQLD 240
Query: 819 QHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDK 998
QHPIDGYLSHTELAPLRAPLIPMEHCTTRFF+TCDLDNDKYIALDEWAGCFGIKE+DIDK
Sbjct: 241 QHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKEKDIDK 300
Query: 999 DLVI 1010
DLVI
Sbjct: 301 DLVI 304
>ref|NP_001029474.1| SPARC-like protein 1 [Bos taurus].
Length = 654
Score = 318 bits (815), Expect = 8e-87
Identities = 142/232 (61%), Positives = 180/232 (77%), Gaps = 1/232 (0%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C + CK G +C+ D++ P CVCQDP SCP P ++VC DN+T+ SSCH FATKC
Sbjct: 423 CLSFQCKRGHICKADQHGKPYCVCQDPASCP-PTKLLDQVCGTDNQTYASSCHLFATKCR 481
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 671
+E TKKGH+LHLDY G CK IP C D E+T+FPLRMRDWLKN+LV LYE + E++ L E
Sbjct: 482 MERTKKGHQLHLDYFGACKTIPACTDFEVTQFPLRMRDWLKNILVQLYEPNPEHSGYLNE 541
Query: 672 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 851
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQF +LDQHP D L+H+
Sbjct: 542 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHS 601
Query: 852 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 1007
ELAPLRA L+PMEHC TRFF+ CD + DK+I L EW CF IKE+DID++L+
Sbjct: 602 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLQEWGHCFEIKEEDIDENLL 653
>ref|NP_001094585.1| testican-2 [Bos taurus].
Length = 424
Score = 53.9 bits (128), Expect = 4e-07
Identities = 58/255 (22%), Positives = 81/255 (31%), Gaps = 34/255 (13%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQ------------------DPTSCPAPIGEFEKV 434
+PCQ C KVC MC+ + D P + V
Sbjct: 88 DPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPAVKLHGNKDTICKPCHMAHLASV 147
Query: 435 CSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPC-------------KYIPPCLDS 575
C +D T+ S C C +L + GPC C
Sbjct: 148 CGSDGHTYSSVCKLEQQACL-----SSKQLTVRCEGPCPCPTEQAATSTSDSKPETCTGQ 202
Query: 576 ELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKR---LEAGDHPVEL 746
+L + R+RDW + +HEN K+ +G P
Sbjct: 203 DLADLGDRLRDWFQ-------------------------LLHENSKQNGSANSGASPASG 237
Query: 747 LARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDL 926
L + + I W F +LD D +L TELA + L E C FF +CD
Sbjct: 238 LDKSLGASCKDSI---GWMFSKLDTSA-DLFLDQTELAAIN--LDKYEVCIRPFFNSCDT 291
Query: 927 DNDKYIALDEWAGCF 971
D ++ EW CF
Sbjct: 292 YKDGRVSTAEWCFCF 306
>ref|NP_001069178.1| follistatin-related protein 3 precursor [Bos taurus].
Length = 261
Score = 52.8 bits (125), Expect = 8e-07
Identities = 29/91 (31%), Positives = 41/91 (45%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C + C + C +D+ S CV CPAP +++C N+N T+ SSCH C
Sbjct: 171 CAHVVCLRPQSCVVDQTGSAHCVVCRAAPCPAPSSPGQELCGNNNVTYLSSCHLRQATCF 230
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTE 587
L G + + + G C P LD E E
Sbjct: 231 L-----GRSIGVRHPGSCAGTPEPLDPESEE 256
>ref|NP_786995.2| follistatin precursor [Bos taurus].
Length = 344
Score = 50.8 bits (120), Expect = 3e-06
Identities = 27/90 (30%), Positives = 39/90 (43%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C++ C C +D+ N+ CV + CP P + +C ND T+ S+CH C
Sbjct: 168 CRDVFCPGSSTCVVDQTNNAYCVTCNRI-CPEPTSSEQYLCGNDGVTYPSACHLRKATCL 226
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELT 584
L G + L Y G C C D + T
Sbjct: 227 L-----GRSIGLAYEGKCIKAKSCDDIQCT 251
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,811,590
Number of extensions: 1418349
Number of successful extensions: 7343
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7153
Number of HSP's successfully gapped: 5
Length of query: 497
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 391
Effective length of database: 14,174,046
Effective search space: 5542051986
Effective search space used: 5542051986
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000577
(1493 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854982.1| PREDICTED: similar to SPARC precursor (Secreted... 550 e-156
Alignment gi|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 prec... 322 5e-88
Alignment gi|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 prec... 322 5e-88
Alignment gi|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 prec... 322 5e-88
Alignment gi|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 prec... 322 5e-88
Alignment gi|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPA... 57 5e-08
Alignment gi|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPA... 52 1e-06
Alignment gi|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPA... 52 1e-06
Alignment gi|XP_536475.2| PREDICTED: similar to Follistatin precursor (FS... 52 2e-06
>ref|XP_854982.1| PREDICTED: similar to SPARC precursor (Secreted protein acidic and
rich in cysteine) (Osteonectin) (ON) (Basement-membrane
protein 40) (BM-40) [Canis familiaris].
Length = 303
Score = 550 bits (1418), Expect = e-156
Identities = 260/303 (85%), Positives = 265/303 (87%), Gaps = 3/303 (0%)
Frame = +3
Query: 111 MRAWIFFLLCLAGKALAAPQQEALPDXXXXXXXXXXXXXXG---ANPVQXXXXXXXXXXX 281
MRAWIFFLLCLAG+ALAAPQQEALPD G ANPVQ
Sbjct: 1 MRAWIFFLLCLAGRALAAPQQEALPDETEVVEETVAEVAEGPVGANPVQVEVGEFDEGAE 60
Query: 282 XXXXXXXXXNPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFD 461
NPCQNHHCKHGKVCELDENN+PMCVCQDPTSCP PIG+FEKVCSNDNKTFD
Sbjct: 61 ETEEEVVAENPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPGPIGDFEKVCSNDNKTFD 120
Query: 462 SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE 641
SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE
Sbjct: 121 SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE 180
Query: 642 RDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQ 821
RDE+NNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQ
Sbjct: 181 RDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQ 240
Query: 822 HPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKD 1001
HPIDGYLSHTELAPLRAPLIPMEHCTTRFF+TCDLDNDKYIALDEWAGCFGIKEQDIDKD
Sbjct: 241 HPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKEQDIDKD 300
Query: 1002 LVI 1010
LVI
Sbjct: 301 LVI 303
>ref|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 4
[Canis familiaris].
Length = 656
Score = 322 bits (826), Expect = 5e-88
Identities = 143/232 (61%), Positives = 182/232 (78%), Gaps = 1/232 (0%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C N CK G +C+ D+ P CVCQD +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 425 CMNFQCKRGHICKADQQGKPHCVCQDSVTCP-PTKLLDQVCGTDNQTYASSCHLFATKCK 483
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 671
LEGTKKGH+L LDY G CK IP C D E+T+FPLRMRDWLKN+L+ LYE++ E+ L E
Sbjct: 484 LEGTKKGHQLQLDYFGACKSIPICTDFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNE 543
Query: 672 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 851
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQFG+LDQHP+D L+H+
Sbjct: 544 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHS 603
Query: 852 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 1007
ELAPLRA L+PMEHC TRFF+ CD + DK+I L+EW CFGIKE+DID++L+
Sbjct: 604 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLEEWGHCFGIKEEDIDENLL 655
>ref|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 1
[Canis familiaris].
Length = 667
Score = 322 bits (826), Expect = 5e-88
Identities = 143/232 (61%), Positives = 182/232 (78%), Gaps = 1/232 (0%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C N CK G +C+ D+ P CVCQD +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 436 CMNFQCKRGHICKADQQGKPHCVCQDSVTCP-PTKLLDQVCGTDNQTYASSCHLFATKCK 494
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 671
LEGTKKGH+L LDY G CK IP C D E+T+FPLRMRDWLKN+L+ LYE++ E+ L E
Sbjct: 495 LEGTKKGHQLQLDYFGACKSIPICTDFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNE 554
Query: 672 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 851
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQFG+LDQHP+D L+H+
Sbjct: 555 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHS 614
Query: 852 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 1007
ELAPLRA L+PMEHC TRFF+ CD + DK+I L+EW CFGIKE+DID++L+
Sbjct: 615 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLEEWGHCFGIKEEDIDENLL 666
>ref|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 2
[Canis familiaris].
Length = 667
Score = 322 bits (826), Expect = 5e-88
Identities = 143/232 (61%), Positives = 182/232 (78%), Gaps = 1/232 (0%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C N CK G +C+ D+ P CVCQD +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 436 CMNFQCKRGHICKADQQGKPHCVCQDSVTCP-PTKLLDQVCGTDNQTYASSCHLFATKCK 494
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 671
LEGTKKGH+L LDY G CK IP C D E+T+FPLRMRDWLKN+L+ LYE++ E+ L E
Sbjct: 495 LEGTKKGHQLQLDYFGACKSIPICTDFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNE 554
Query: 672 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 851
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQFG+LDQHP+D L+H+
Sbjct: 555 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHS 614
Query: 852 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 1007
ELAPLRA L+PMEHC TRFF+ CD + DK+I L+EW CFGIKE+DID++L+
Sbjct: 615 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLEEWGHCFGIKEEDIDENLL 666
>ref|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 3
[Canis familiaris].
Length = 609
Score = 322 bits (826), Expect = 5e-88
Identities = 143/232 (61%), Positives = 182/232 (78%), Gaps = 1/232 (0%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C N CK G +C+ D+ P CVCQD +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 378 CMNFQCKRGHICKADQQGKPHCVCQDSVTCP-PTKLLDQVCGTDNQTYASSCHLFATKCK 436
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 671
LEGTKKGH+L LDY G CK IP C D E+T+FPLRMRDWLKN+L+ LYE++ E+ L E
Sbjct: 437 LEGTKKGHQLQLDYFGACKSIPICTDFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNE 496
Query: 672 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 851
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQFG+LDQHP+D L+H+
Sbjct: 497 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHS 556
Query: 852 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 1007
ELAPLRA L+PMEHC TRFF+ CD + DK+I L+EW CFGIKE+DID++L+
Sbjct: 557 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLEEWGHCFGIKEEDIDENLL 608
>ref|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPARC/osteonectin,
CWCV, and Kazal-like domains proteoglycan 3) [Canis
familiaris].
Length = 443
Score = 57.0 bits (136), Expect = 5e-08
Identities = 56/210 (26%), Positives = 78/210 (37%), Gaps = 17/210 (8%)
Frame = +3
Query: 411 PIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP--------- 563
P+ VC +D T+ S C C L G +L ++ G C P
Sbjct: 150 PVAYTNPVCGSDGHTYSSQCKLEYQACVL-----GKQLSVNCEGRCPCPPDKPTGPSRRV 204
Query: 564 ---CLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDH 734
C D E E R+RDW K L+E N K+ +A
Sbjct: 205 KRACSDLEFREVANRLRDWFK----ALHESGSQN------------------KKTKA--- 239
Query: 735 PVELLARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCT 899
L R ++ I P+ W F +LD + D L +EL + L E CT
Sbjct: 240 ----LLRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCT 292
Query: 900 TRFFQTCDLDNDKYIALDEWAGCFGIKEQD 989
FF +CD D I+ +EW CF ++QD
Sbjct: 293 KAFFNSCDTYKDSLISNNEWCYCFQ-RQQD 321
>ref|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin,
CWCV, and Kazal-like domains proteoglycan 2) isoform 1
[Canis familiaris].
Length = 421
Score = 52.4 bits (124), Expect = 1e-06
Identities = 57/253 (22%), Positives = 81/253 (32%), Gaps = 32/253 (12%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQ------------------DPTSCPAPIGEFEKV 434
+PCQ C KVC MC+ + D P + V
Sbjct: 85 DPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPTLKLPGNKDTICKPCHMAPLASV 144
Query: 435 CSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP-------------CLDS 575
C +D T+ S C C +L + GPC C
Sbjct: 145 CGSDGHTYSSVCKLEQQACL-----SSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQ 199
Query: 576 ELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLAR 755
+L + R+RDW + +HEN K+ + L A
Sbjct: 200 DLADLGDRLRDWFQ-------------------------LLHENAKQNGSAGSGANL-AS 233
Query: 756 DFEKNYNMYIFP-VHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDN 932
+K+ + W F +LD D +L TELA + L E C FF +CD
Sbjct: 234 GLDKSLGASCKDSIGWMFSKLDTSA-DLFLDQTELAAIN--LDKYEVCIRPFFNSCDTYK 290
Query: 933 DKYIALDEWAGCF 971
D ++ EW CF
Sbjct: 291 DGRVSTAEWCFCF 303
>ref|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin,
CWCV, and Kazal-like domains proteoglycan 2) isoform 2
[Canis familiaris].
Length = 424
Score = 52.4 bits (124), Expect = 1e-06
Identities = 57/253 (22%), Positives = 81/253 (32%), Gaps = 32/253 (12%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQ------------------DPTSCPAPIGEFEKV 434
+PCQ C KVC MC+ + D P + V
Sbjct: 88 DPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPTLKLPGNKDTICKPCHMAPLASV 147
Query: 435 CSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP-------------CLDS 575
C +D T+ S C C +L + GPC C
Sbjct: 148 CGSDGHTYSSVCKLEQQACL-----SSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQ 202
Query: 576 ELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLAR 755
+L + R+RDW + +HEN K+ + L A
Sbjct: 203 DLADLGDRLRDWFQ-------------------------LLHENAKQNGSAGSGANL-AS 236
Query: 756 DFEKNYNMYIFP-VHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDN 932
+K+ + W F +LD D +L TELA + L E C FF +CD
Sbjct: 237 GLDKSLGASCKDSIGWMFSKLDTSA-DLFLDQTELAAIN--LDKYEVCIRPFFNSCDTYK 293
Query: 933 DKYIALDEWAGCF 971
D ++ EW CF
Sbjct: 294 DGRVSTAEWCFCF 306
>ref|XP_536475.2| PREDICTED: similar to Follistatin precursor (FS) (Activin-binding
protein) [Canis familiaris].
Length = 354
Score = 51.6 bits (122), Expect = 2e-06
Identities = 27/90 (30%), Positives = 39/90 (43%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C++ C C +D+ N+ CV + CP P + +C ND T+ S+CH C
Sbjct: 178 CRDVFCPGSSTCVVDQTNNAYCVTCN-RMCPEPTSSEQYLCGNDGVTYPSACHLRKATCL 236
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELT 584
L G + L Y G C C D + T
Sbjct: 237 L-----GRSIGLAYEGKCIKAKSCEDIQCT 261
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,107,536
Number of extensions: 1458956
Number of successful extensions: 6936
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6821
Number of HSP's successfully gapped: 9
Length of query: 497
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 390
Effective length of database: 15,307,552
Effective search space: 5969945280
Effective search space used: 5969945280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000577
(1493 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003109.1| SPARC precursor [Homo sapiens]. 550 e-156
Alignment gi|NP_001121782.1| SPARC-like protein 1 precursor [Homo sapiens]. 322 7e-88
Alignment gi|NP_004675.3| SPARC-like protein 1 precursor [Homo sapiens]. 322 7e-88
Alignment gi|NP_001035249.1| testican-3 isoform 1 [Homo sapiens]. 55 2e-07
Alignment gi|NP_058646.2| testican-3 isoform 2 [Homo sapiens]. 55 2e-07
Alignment gi|NP_001191281.1| testican-3 isoform 3 [Homo sapiens]. 55 2e-07
Alignment gi|NP_001191288.1| testican-3 isoform 10 [Homo sapiens]. 54 3e-07
Alignment gi|NP_001191287.1| testican-3 isoform 9 [Homo sapiens]. 54 3e-07
Alignment gi|NP_037541.1| follistatin isoform FST344 precursor [Homo sapi... 52 2e-06
Alignment gi|NP_006341.1| follistatin isoform FST317 precursor [Homo sapi... 52 2e-06
>ref|NP_003109.1| SPARC precursor [Homo sapiens].
Length = 303
Score = 550 bits (1418), Expect = e-156
Identities = 260/303 (85%), Positives = 266/303 (87%), Gaps = 3/303 (0%)
Frame = +3
Query: 111 MRAWIFFLLCLAGKALAAPQQEALPDXXXXXXXXXXXXXX---GANPVQXXXXXXXXXXX 281
MRAWIFFLLCLAG+ALAAPQQEALPD GANPVQ
Sbjct: 1 MRAWIFFLLCLAGRALAAPQQEALPDETEVVEETVAEVTEVSVGANPVQVEVGEFDDGAE 60
Query: 282 XXXXXXXXXNPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFD 461
NPCQNHHCKHGKVCELDENN+PMCVCQDPTSCPAPIGEFEKVCSNDNKTFD
Sbjct: 61 ETEEEVVAENPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFD 120
Query: 462 SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE 641
SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE
Sbjct: 121 SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE 180
Query: 642 RDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQ 821
RDE+NNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQ
Sbjct: 181 RDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQ 240
Query: 822 HPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKD 1001
HPIDGYLSHTELAPLRAPLIPMEHCTTRFF+TCDLDNDKYIALDEWAGCFGIK++DIDKD
Sbjct: 241 HPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKD 300
Query: 1002 LVI 1010
LVI
Sbjct: 301 LVI 303
>ref|NP_001121782.1| SPARC-like protein 1 precursor [Homo sapiens].
Length = 664
Score = 322 bits (824), Expect = 7e-88
Identities = 142/232 (61%), Positives = 180/232 (77%), Gaps = 1/232 (0%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C + CK G +C+ D+ P CVCQDP +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 433 CMSFQCKRGHICKADQQGKPHCVCQDPVTCP-PTKPLDQVCGTDNQTYASSCHLFATKCR 491
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 671
LEGTKKGH+L LDY G CK IP C D E+ +FPLRMRDWLKN+L+ LYE + E+ L E
Sbjct: 492 LEGTKKGHQLQLDYFGACKSIPTCTDFEVIQFPLRMRDWLKNILMQLYEANSEHAGYLNE 551
Query: 672 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 851
KQ+ +VKKI+ +EKRL AGDHP++LL RDF+KNY+MY++PVHWQF +LDQHP+D L+H+
Sbjct: 552 KQRNKVKKIYLDEKRLLAGDHPIDLLLRDFKKNYHMYVYPVHWQFSELDQHPMDRVLTHS 611
Query: 852 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 1007
ELAPLRA L+PMEHC TRFF+ CD + DK+I L EW CFGIKE+DID++L+
Sbjct: 612 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLKEWGHCFGIKEEDIDENLL 663
>ref|NP_004675.3| SPARC-like protein 1 precursor [Homo sapiens].
Length = 664
Score = 322 bits (824), Expect = 7e-88
Identities = 142/232 (61%), Positives = 180/232 (77%), Gaps = 1/232 (0%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C + CK G +C+ D+ P CVCQDP +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 433 CMSFQCKRGHICKADQQGKPHCVCQDPVTCP-PTKPLDQVCGTDNQTYASSCHLFATKCR 491
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 671
LEGTKKGH+L LDY G CK IP C D E+ +FPLRMRDWLKN+L+ LYE + E+ L E
Sbjct: 492 LEGTKKGHQLQLDYFGACKSIPTCTDFEVIQFPLRMRDWLKNILMQLYEANSEHAGYLNE 551
Query: 672 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 851
KQ+ +VKKI+ +EKRL AGDHP++LL RDF+KNY+MY++PVHWQF +LDQHP+D L+H+
Sbjct: 552 KQRNKVKKIYLDEKRLLAGDHPIDLLLRDFKKNYHMYVYPVHWQFSELDQHPMDRVLTHS 611
Query: 852 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 1007
ELAPLRA L+PMEHC TRFF+ CD + DK+I L EW CFGIKE+DID++L+
Sbjct: 612 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLKEWGHCFGIKEEDIDENLL 663
>ref|NP_001035249.1| testican-3 isoform 1 [Homo sapiens].
Length = 433
Score = 54.7 bits (130), Expect = 2e-07
Identities = 61/265 (23%), Positives = 88/265 (33%), Gaps = 38/265 (14%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQD---------------------PTSCPAPIGEF 425
+PC C KVC ++ + +C+ T P+
Sbjct: 85 DPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYP 144
Query: 426 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIG--PCKYIPP----------CL 569
VC +D T+ C C L G ++ + G PC P C
Sbjct: 145 SPVCGSDGHTYSFQCKLEYQACVL-----GKQISVKCEGHCPCPSDKPTSTSRNVKRACS 199
Query: 570 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 749
D E E R+RDW K L+E N + L
Sbjct: 200 DLEFREVANRLRDWFK----ALHESGSQNK-------------------------KTKTL 230
Query: 750 ARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQ 914
R ++ I P+ W F +LD + D L +EL + L E CT FF
Sbjct: 231 LRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELRSIY--LDKNEQCTKAFFN 287
Query: 915 TCDLDNDKYIALDEWAGCFGIKEQD 989
+CD D I+ +EW CF ++QD
Sbjct: 288 SCDTYKDSLISNNEWCYCFQ-RQQD 311
>ref|NP_058646.2| testican-3 isoform 2 [Homo sapiens].
Length = 436
Score = 54.7 bits (130), Expect = 2e-07
Identities = 61/265 (23%), Positives = 88/265 (33%), Gaps = 38/265 (14%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQD---------------------PTSCPAPIGEF 425
+PC C KVC ++ + +C+ T P+
Sbjct: 88 DPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYP 147
Query: 426 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIG--PCKYIPP----------CL 569
VC +D T+ C C L G ++ + G PC P C
Sbjct: 148 SPVCGSDGHTYSFQCKLEYQACVL-----GKQISVKCEGHCPCPSDKPTSTSRNVKRACS 202
Query: 570 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 749
D E E R+RDW K L+E N + L
Sbjct: 203 DLEFREVANRLRDWFK----ALHESGSQNK-------------------------KTKTL 233
Query: 750 ARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQ 914
R ++ I P+ W F +LD + D L +EL + L E CT FF
Sbjct: 234 LRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELRSIY--LDKNEQCTKAFFN 290
Query: 915 TCDLDNDKYIALDEWAGCFGIKEQD 989
+CD D I+ +EW CF ++QD
Sbjct: 291 SCDTYKDSLISNNEWCYCFQ-RQQD 314
>ref|NP_001191281.1| testican-3 isoform 3 [Homo sapiens].
Length = 385
Score = 54.7 bits (130), Expect = 2e-07
Identities = 61/265 (23%), Positives = 88/265 (33%), Gaps = 38/265 (14%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQD---------------------PTSCPAPIGEF 425
+PC C KVC ++ + +C+ T P+
Sbjct: 37 DPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYP 96
Query: 426 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIG--PCKYIPP----------CL 569
VC +D T+ C C L G ++ + G PC P C
Sbjct: 97 SPVCGSDGHTYSFQCKLEYQACVL-----GKQISVKCEGHCPCPSDKPTSTSRNVKRACS 151
Query: 570 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 749
D E E R+RDW K L+E N + L
Sbjct: 152 DLEFREVANRLRDWFK----ALHESGSQNK-------------------------KTKTL 182
Query: 750 ARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQ 914
R ++ I P+ W F +LD + D L +EL + L E CT FF
Sbjct: 183 LRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELRSIY--LDKNEQCTKAFFN 239
Query: 915 TCDLDNDKYIALDEWAGCFGIKEQD 989
+CD D I+ +EW CF ++QD
Sbjct: 240 SCDTYKDSLISNNEWCYCFQ-RQQD 263
>ref|NP_001191288.1| testican-3 isoform 10 [Homo sapiens].
Length = 316
Score = 54.3 bits (129), Expect = 3e-07
Identities = 59/259 (22%), Positives = 84/259 (32%), Gaps = 38/259 (14%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQD---------------------PTSCPAPIGEF 425
+PC C KVC ++ + +C+ T P+
Sbjct: 88 DPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYP 147
Query: 426 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIG--PCKYIPP----------CL 569
VC +D T+ C C L G ++ + G PC P C
Sbjct: 148 SPVCGSDGHTYSFQCKLEYQACVL-----GKQISVKCEGHCPCPSDKPTSTSRNVKRACS 202
Query: 570 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 749
D E E R+RDW K L+E N + L
Sbjct: 203 DLEFREVANRLRDWFK----ALHESGSQNK-------------------------KTKTL 233
Query: 750 ARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQ 914
R ++ I P+ W F +LD + D L +EL + L E CT FF
Sbjct: 234 LRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELRSIY--LDKNEQCTKAFFN 290
Query: 915 TCDLDNDKYIALDEWAGCF 971
+CD D I+ +EW CF
Sbjct: 291 SCDTYKDSLISNNEWCYCF 309
>ref|NP_001191287.1| testican-3 isoform 9 [Homo sapiens].
Length = 313
Score = 54.3 bits (129), Expect = 3e-07
Identities = 59/259 (22%), Positives = 84/259 (32%), Gaps = 38/259 (14%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQD---------------------PTSCPAPIGEF 425
+PC C KVC ++ + +C+ T P+
Sbjct: 85 DPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYP 144
Query: 426 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIG--PCKYIPP----------CL 569
VC +D T+ C C L G ++ + G PC P C
Sbjct: 145 SPVCGSDGHTYSFQCKLEYQACVL-----GKQISVKCEGHCPCPSDKPTSTSRNVKRACS 199
Query: 570 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 749
D E E R+RDW K L+E N + L
Sbjct: 200 DLEFREVANRLRDWFK----ALHESGSQNK-------------------------KTKTL 230
Query: 750 ARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQ 914
R ++ I P+ W F +LD + D L +EL + L E CT FF
Sbjct: 231 LRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELRSIY--LDKNEQCTKAFFN 287
Query: 915 TCDLDNDKYIALDEWAGCF 971
+CD D I+ +EW CF
Sbjct: 288 SCDTYKDSLISNNEWCYCF 306
>ref|NP_037541.1| follistatin isoform FST344 precursor [Homo sapiens].
Length = 344
Score = 51.6 bits (122), Expect = 2e-06
Identities = 27/90 (30%), Positives = 39/90 (43%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C++ C C +D+ N+ CV + CP P + +C ND T+ S+CH C
Sbjct: 168 CRDVFCPGSSTCVVDQTNNAYCVTCNRI-CPEPASSEQYLCGNDGVTYSSACHLRKATCL 226
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELT 584
L G + L Y G C C D + T
Sbjct: 227 L-----GRSIGLAYEGKCIKAKSCEDIQCT 251
>ref|NP_006341.1| follistatin isoform FST317 precursor [Homo sapiens].
Length = 317
Score = 51.6 bits (122), Expect = 2e-06
Identities = 27/90 (30%), Positives = 39/90 (43%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C++ C C +D+ N+ CV + CP P + +C ND T+ S+CH C
Sbjct: 168 CRDVFCPGSSTCVVDQTNNAYCVTCNRI-CPEPASSEQYLCGNDGVTYSSACHLRKATCL 226
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELT 584
L G + L Y G C C D + T
Sbjct: 227 L-----GRSIGLAYEGKCIKAKSCEDIQCT 251
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,976,607
Number of extensions: 1425924
Number of successful extensions: 6941
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6788
Number of HSP's successfully gapped: 14
Length of query: 497
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 390
Effective length of database: 14,770,016
Effective search space: 5760306240
Effective search space used: 5760306240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000577
(1493 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033268.1| SPARC precursor [Mus musculus]. 535 e-152
Alignment gi|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus]. 319 3e-87
Alignment gi|NP_076178.1| testican-3 precursor [Mus musculus]. 60 4e-09
Alignment gi|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus]. 57 4e-08
>ref|NP_033268.1| SPARC precursor [Mus musculus].
Length = 302
Score = 535 bits (1377), Expect = e-152
Identities = 253/302 (83%), Positives = 261/302 (86%), Gaps = 2/302 (0%)
Frame = +3
Query: 111 MRAWIFFLLCLAGKALAAPQQEALPDXXXXXXXXXXXXXX--GANPVQXXXXXXXXXXXX 284
MRAWIFFLLCLAG+ALAAPQQ + + GANPVQ
Sbjct: 1 MRAWIFFLLCLAGRALAAPQQTEVAEEIVEEETVVEETGVPVGANPVQVEMGEFEDGAEE 60
Query: 285 XXXXXXXXNPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDS 464
NPCQNHHCKHGKVCELDE+N+PMCVCQDPTSCPAPIGEFEKVCSNDNKTFDS
Sbjct: 61 TVEEVVADNPCQNHHCKHGKVCELDESNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDS 120
Query: 465 SCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYER 644
SCHFFATKCTLEGTKKGHKLHLDYIGPCKYI PCLDSELTEFPLRMRDWLKNVLVTLYER
Sbjct: 121 SCHFFATKCTLEGTKKGHKLHLDYIGPCKYIAPCLDSELTEFPLRMRDWLKNVLVTLYER 180
Query: 645 DENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQH 824
DE NNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQH
Sbjct: 181 DEGNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQH 240
Query: 825 PIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDL 1004
PIDGYLSHTELAPLRAPLIPMEHCTTRFF+TCDLDNDKYIAL+EWAGCFGIKEQDI+KDL
Sbjct: 241 PIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALEEWAGCFGIKEQDINKDL 300
Query: 1005 VI 1010
VI
Sbjct: 301 VI 302
>ref|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus].
Length = 650
Score = 319 bits (818), Expect = 3e-87
Identities = 142/232 (61%), Positives = 177/232 (76%), Gaps = 1/232 (0%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C N CK G +C+ D P CVCQDP +CP P ++ C DN+T+ SSCH FATKC
Sbjct: 419 CTNFQCKRGHICKTDPQGKPHCVCQDPETCP-PAKILDQACGTDNQTYASSCHLFATKCR 477
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 671
LEGTKKGH+L LDY G CK IP C D E+ +FPLRMRDWLKN+L+ LYE + ++ L E
Sbjct: 478 LEGTKKGHQLQLDYFGACKSIPACTDFEVAQFPLRMRDWLKNILMQLYEPNPKHGGYLNE 537
Query: 672 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 851
KQ+ +VKKI+ +EKRL AGDHP+ELL RDF+KNY+MY++PVHWQF +LDQHP D L+H+
Sbjct: 538 KQRSKVKKIYLDEKRLLAGDHPIELLLRDFKKNYHMYVYPVHWQFNELDQHPADRILTHS 597
Query: 852 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 1007
ELAPLRA L+PMEHC TRFF+ CD + DK+I L EW CFGIKE+DID++L+
Sbjct: 598 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLKEWGHCFGIKEEDIDENLL 649
>ref|NP_076178.1| testican-3 precursor [Mus musculus].
Length = 436
Score = 60.1 bits (144), Expect = 4e-09
Identities = 63/265 (23%), Positives = 90/265 (33%), Gaps = 38/265 (14%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQ---------------------DPTSCPAPIGEF 425
+PC C KVC + + +C+ T P PI
Sbjct: 88 DPCLKTKCSRHKVCITQDAQTALCISHRRLTHSMKEVGGSHKQWRGLPSSTCKPCPIAYA 147
Query: 426 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPC------------KYIPPCL 569
VC +D ++ S C C L G ++ + G C C
Sbjct: 148 SPVCGSDGHSYSSQCKLEYQACVL-----GKQISIKCEGRCPCPSDKSMNIGRNVKRACS 202
Query: 570 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 749
D E E R+RDW K L+E N K+ +A L
Sbjct: 203 DLEFREVANRLRDWFK----ALHESGSQN------------------KKTKA-------L 233
Query: 750 ARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQ 914
R ++ I P+ W F +LD + D L +EL + L E CT FF
Sbjct: 234 LRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTKAFFN 290
Query: 915 TCDLDNDKYIALDEWAGCFGIKEQD 989
+CD D I+ +EW CF ++QD
Sbjct: 291 SCDTYKDSLISNNEWCYCFQ-RQQD 314
>ref|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus].
Length = 441
Score = 57.0 bits (136), Expect = 4e-08
Identities = 56/260 (21%), Positives = 90/260 (34%), Gaps = 39/260 (15%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQD------------------PTSC----PAPIGE 422
+PC C KVC + + +CV + P++ P P+ +
Sbjct: 87 DPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCKPCPVAQ 146
Query: 423 FEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP------------C 566
VC +D T+ S C K G L+ GPC +P C
Sbjct: 147 SAMVCGSDGHTYTSKC-----KLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSAC 201
Query: 567 LDSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVEL 746
D EL R++DW +HE+ R+ ++
Sbjct: 202 TDKELRNLASRLKDWFG-------------------------ALHEDANRV------IKP 230
Query: 747 LARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFF 911
+ D + ++ I P+ W F +LD + D L H+E+ + L E C F
Sbjct: 231 TSSDPAQGFDTSILPICKDSLGWMFNKLDMN-YDLLLDHSEINAIY--LDKYEPCIKPLF 287
Query: 912 QTCDLDNDKYIALDEWAGCF 971
+CD D ++ +EW CF
Sbjct: 288 NSCDSFKDGKLSNNEWCYCF 307
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,552,074
Number of extensions: 1191049
Number of successful extensions: 6113
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5788
Number of HSP's successfully gapped: 4
Length of query: 497
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 392
Effective length of database: 12,463,779
Effective search space: 4885801368
Effective search space used: 4885801368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000577
(1493 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001026964.1| SPARC precursor [Sus scrofa]. 564 e-161
Alignment gi|XP_003134185.2| PREDICTED: SPARC-like isoform 1 [Sus scrofa]. 548 e-156
Alignment gi|XP_003361338.1| PREDICTED: SPARC-like isoform 2 [Sus scrofa]. 542 e-154
Alignment gi|NP_001090891.1| SPARC-like protein 1 [Sus scrofa]. 313 1e-85
Alignment gi|XP_003357144.1| PREDICTED: SPARC-like protein 1-like [Sus sc... 310 1e-84
Alignment gi|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa]. 56 5e-08
Alignment gi|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa]. 56 5e-08
Alignment gi|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa]. 56 5e-08
Alignment gi|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa]. 52 7e-07
Alignment gi|NP_001003662.1| follistatin precursor [Sus scrofa]. 52 1e-06
>ref|NP_001026964.1| SPARC precursor [Sus scrofa].
Length = 300
Score = 564 bits (1453), Expect = e-161
Identities = 266/300 (88%), Positives = 266/300 (88%)
Frame = +3
Query: 111 MRAWIFFLLCLAGKALAAPQQEALPDXXXXXXXXXXXXXXGANPVQXXXXXXXXXXXXXX 290
MRAWIFFLLCLAGKALAAPQQEALPD GANPVQ
Sbjct: 1 MRAWIFFLLCLAGKALAAPQQEALPDETEVVEETVAEVPVGANPVQVEVGEFDDGAEEAE 60
Query: 291 XXXXXXNPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSC 470
NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSC
Sbjct: 61 EEVVAENPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSC 120
Query: 471 HFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDE 650
HFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDE
Sbjct: 121 HFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDE 180
Query: 651 NNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPI 830
NNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPI
Sbjct: 181 NNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPI 240
Query: 831 DGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 1010
DGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI
Sbjct: 241 DGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 300
>ref|XP_003134185.2| PREDICTED: SPARC-like isoform 1 [Sus scrofa].
Length = 300
Score = 548 bits (1411), Expect = e-156
Identities = 258/300 (86%), Positives = 260/300 (86%)
Frame = +3
Query: 111 MRAWIFFLLCLAGKALAAPQQEALPDXXXXXXXXXXXXXXGANPVQXXXXXXXXXXXXXX 290
MRAWIFFLLCLAGKALAAPQQEALPD GANPVQ
Sbjct: 1 MRAWIFFLLCLAGKALAAPQQEALPDETEVVEETVAEVPVGANPVQVEVGEFDDGAEEAE 60
Query: 291 XXXXXXNPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSC 470
NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAP +VCSNDNKTFDSSC
Sbjct: 61 EEVVAENPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPXXXXRQVCSNDNKTFDSSC 120
Query: 471 HFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDE 650
HFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDE
Sbjct: 121 HFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDE 180
Query: 651 NNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPI 830
NNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPI
Sbjct: 181 NNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPI 240
Query: 831 DGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 1010
DGYL+HTEL PLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI
Sbjct: 241 DGYLTHTELXPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 300
>ref|XP_003361338.1| PREDICTED: SPARC-like isoform 2 [Sus scrofa].
Length = 303
Score = 542 bits (1397), Expect = e-154
Identities = 258/303 (85%), Positives = 260/303 (85%), Gaps = 3/303 (0%)
Frame = +3
Query: 111 MRAWIFFLLCLAGKALAAPQQEALPDXXXXXXXXXXXXXX---GANPVQXXXXXXXXXXX 281
MRAWIFFLLCLAGKALAAPQQEALPD GANPVQ
Sbjct: 1 MRAWIFFLLCLAGKALAAPQQEALPDETEVVEETVAEVAEVPVGANPVQVEVGEFDDGAE 60
Query: 282 XXXXXXXXXNPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFD 461
NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAP +VCSNDNKTFD
Sbjct: 61 EAEEEVVAENPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPXXXXRQVCSNDNKTFD 120
Query: 462 SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE 641
SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE
Sbjct: 121 SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE 180
Query: 642 RDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQ 821
RDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQ
Sbjct: 181 RDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQ 240
Query: 822 HPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKD 1001
HPIDGYL+HTEL PLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKD
Sbjct: 241 HPIDGYLTHTELXPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKD 300
Query: 1002 LVI 1010
LVI
Sbjct: 301 LVI 303
>ref|NP_001090891.1| SPARC-like protein 1 [Sus scrofa].
Length = 662
Score = 313 bits (803), Expect = 1e-85
Identities = 141/232 (60%), Positives = 177/232 (76%), Gaps = 1/232 (0%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C + CK G +C+ D+ P CVCQDP +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 431 CMSFQCKRGHICKADQQGKPHCVCQDPVTCP-PTKLLDQVCGTDNQTYASSCHLFATKCR 489
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 671
LEGTKKGH+L LDY G CK IP C D E+T+FPLRMRDWLKN+L+ LYE + E+ L E
Sbjct: 490 LEGTKKGHQLQLDYFGACKSIPACTDFEVTQFPLRMRDWLKNILMQLYEPNPEHAGYLNE 549
Query: 672 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 851
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQF +LDQHP D L+H+
Sbjct: 550 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHS 609
Query: 852 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 1007
ELAPLRA L+PMEHC TRFF CD + DK+I L EW CF IKE+DID++L+
Sbjct: 610 ELAPLRASLVPMEHCITRFFGECDPNKDKHITLKEWGRCFEIKEEDIDENLL 661
>ref|XP_003357144.1| PREDICTED: SPARC-like protein 1-like [Sus scrofa].
Length = 705
Score = 310 bits (795), Expect = 1e-84
Identities = 140/232 (60%), Positives = 176/232 (75%), Gaps = 1/232 (0%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C + CK G +C+ D+ P CVCQDP +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 474 CMSFQCKRGHICKADQQGKPHCVCQDPVTCP-PTKLLDQVCGTDNQTYASSCHLFATKCR 532
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 671
LEGTKK H+L LDY G CK IP C D E+T+FPLRMRDWLKN+L+ LYE + E+ L E
Sbjct: 533 LEGTKKEHQLQLDYFGACKSIPACTDFEVTQFPLRMRDWLKNILMQLYEPNPEHAGYLNE 592
Query: 672 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 851
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQF +LDQHP D L+H+
Sbjct: 593 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHS 652
Query: 852 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 1007
ELAPLRA L+PMEHC TRFF CD + DK+I L EW CF IKE+DID++L+
Sbjct: 653 ELAPLRASLVPMEHCITRFFGECDPNKDKHITLKEWGRCFEIKEEDIDENLL 704
>ref|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa].
Length = 427
Score = 56.2 bits (134), Expect = 5e-08
Identities = 62/260 (23%), Positives = 95/260 (36%), Gaps = 33/260 (12%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQ--------------------DPTSCPAPIG-EF 425
+PC N C +VC + + + +C+ Q P++C +G
Sbjct: 82 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSM 141
Query: 426 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP------------CL 569
VC +D + S C C L G ++ + G C C
Sbjct: 142 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRVCT 196
Query: 570 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 749
E E R+RDW K L+E N K LR ++ R + P+
Sbjct: 197 SLEFREVSTRLRDWFK----ALHESGSQNK--KAKGSLRPER-----SRFDTSILPI--- 242
Query: 750 ARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLD 929
+D + W F +LD + D L +EL + L E CT FF +CD
Sbjct: 243 CKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDTY 289
Query: 930 NDKYIALDEWAGCFGIKEQD 989
D+ I+ +EW CF ++QD
Sbjct: 290 RDRSISNNEWCYCFQ-RQQD 308
>ref|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa].
Length = 424
Score = 56.2 bits (134), Expect = 5e-08
Identities = 62/260 (23%), Positives = 95/260 (36%), Gaps = 33/260 (12%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQ--------------------DPTSCPAPIG-EF 425
+PC N C +VC + + + +C+ Q P++C +G
Sbjct: 79 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSM 138
Query: 426 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP------------CL 569
VC +D + S C C L G ++ + G C C
Sbjct: 139 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRVCT 193
Query: 570 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 749
E E R+RDW K L+E N K LR ++ R + P+
Sbjct: 194 SLEFREVSTRLRDWFK----ALHESGSQNK--KAKGSLRPER-----SRFDTSILPI--- 239
Query: 750 ARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLD 929
+D + W F +LD + D L +EL + L E CT FF +CD
Sbjct: 240 CKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDTY 286
Query: 930 NDKYIALDEWAGCFGIKEQD 989
D+ I+ +EW CF ++QD
Sbjct: 287 RDRSISNNEWCYCFQ-RQQD 305
>ref|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa].
Length = 424
Score = 56.2 bits (134), Expect = 5e-08
Identities = 62/260 (23%), Positives = 95/260 (36%), Gaps = 33/260 (12%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQ--------------------DPTSCPAPIG-EF 425
+PC N C +VC + + + +C+ Q P++C +G
Sbjct: 79 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSM 138
Query: 426 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP------------CL 569
VC +D + S C C L G ++ + G C C
Sbjct: 139 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRVCT 193
Query: 570 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 749
E E R+RDW K L+E N K LR ++ R + P+
Sbjct: 194 SLEFREVSTRLRDWFK----ALHESGSQNK--KAKGSLRPER-----SRFDTSILPI--- 239
Query: 750 ARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLD 929
+D + W F +LD + D L +EL + L E CT FF +CD
Sbjct: 240 CKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDTY 286
Query: 930 NDKYIALDEWAGCFGIKEQD 989
D+ I+ +EW CF ++QD
Sbjct: 287 RDRSISNNEWCYCFQ-RQQD 305
>ref|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa].
Length = 413
Score = 52.4 bits (124), Expect = 7e-07
Identities = 56/252 (22%), Positives = 83/252 (32%), Gaps = 31/252 (12%)
Frame = +3
Query: 309 NPCQNHHCKHGKVCELDENNSPMCVCQDP-----------------TSC-PAPIGEFEKV 434
+PCQ C KVC MC+ + T+C P + + V
Sbjct: 77 DPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPALKLHGNKDTACKPCHMAQLASV 136
Query: 435 CSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP-------------CLDS 575
C +D T+ S C C +L + GPC C
Sbjct: 137 CGSDGHTYSSVCKLEQQACL-----SSKQLTVRCEGPCPCPTEQAATSTADGKPETCTGQ 191
Query: 576 ELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLAR 755
+L + R+RDW + L+E + N ++ L D + +
Sbjct: 192 DLADLGDRLRDWFQ----LLHENSKQNGSVSSGANLA-----------SGLDKSLGASCK 236
Query: 756 DFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDND 935
D + W F +LD D +L ELA + L E C FF +CD D
Sbjct: 237 D----------SIGWMFSKLDTSA-DLFLDQMELAAIN--LDKYEVCIRPFFNSCDTYKD 283
Query: 936 KYIALDEWAGCF 971
++ EW CF
Sbjct: 284 GRVSTAEWCFCF 295
>ref|NP_001003662.1| follistatin precursor [Sus scrofa].
Length = 344
Score = 51.6 bits (122), Expect = 1e-06
Identities = 27/90 (30%), Positives = 39/90 (43%)
Frame = +3
Query: 315 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 494
C++ C C +D+ N+ CV + CP P + +C ND T+ S+CH C
Sbjct: 168 CRDVFCPGSSTCVVDQTNNAYCVTCNRI-CPEPTSSGQYLCGNDGVTYSSACHLRKATCL 226
Query: 495 LEGTKKGHKLHLDYIGPCKYIPPCLDSELT 584
L G + L Y G C C D + T
Sbjct: 227 L-----GRSIGLAYEGKCIKAKSCEDIQCT 251
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,118,487
Number of extensions: 915305
Number of successful extensions: 4614
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4485
Number of HSP's successfully gapped: 14
Length of query: 497
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 394
Effective length of database: 8,779,541
Effective search space: 3459139154
Effective search space used: 3459139154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000577
(1493 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 642 0.0
gb|GL894053.2| Sus scrofa unplaced genomic scaffold ChrUScaf1937 626 e-177
>Sscrofa_Chr16
|| Length = 86898991
Score = 642 bits (324), Expect = 0.0
Identities = 471/513 (91%), Gaps = 6/513 (1%)
Strand = Plus / Plus
Query: 985 aggacatcgacaaggatctcgtgatctaagccccgcctcctcccgcagaaccagattccc 1044
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 77607570 aggacatcgacaaggatcttgtgatctaagccccgcctcctcccgcagaaccagattccc 77607629
Query: 1045 tctctctgcccttcccctcctcctgttctccc-aatgtttaaaatgtttggatggtttgt 1103
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 77607630 tctctctgcccttcccctcctcctgttctccccaatgtttaaaatgtttggatggtttgt 77607689
Query: 1104 cgttctgcctggggaccaggtgctaatatagatttcaatgaatacattaacggtgccaaa 1163
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 77607690 cgttctgcctggggacaaggtgctaatatagatttcaatgaatacattaacggtgctaaa 77607749
Query: 1164 cagggaaattttaacccaagtcatgacattcttagctgtaactcagctcgcacggcctct 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77607750 cagggaaattttaacccaagtcatgacattcttagctgtaactcagctcgcacggcctct 77607809
Query: 1224 tgctctcccactaa-gagcccctttctctc-tgccatttgcagctc-tgccccttgtctt 1280
||||| |||||||| |||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct: 77607810 tgctcacccactaaggagcccatttctctcttgccatttgcagctcttgccccttgtctt 77607869
Query: 1281 antgacctgtgggtggaaactgatctgttcaagtctgcccttcaacncacgttgcatccc 1340
| |||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct: 77607870 agtgacgtgtgggtggaaactgatctgttcaagtctg-ccttcaacgcacgttgcatctc 77607928
Query: 1341 ccattttccttccttttcgtttgaaaacaacaccccccnaaagagattttgtgttaaata 1400
| |||||| ||| ||| |||||||| ||||| | | | |||||||||||||||| ||
Sbjct: 77607929 cgattttcattcttttctgtttgaaactaacactcacagagagagattttgtgttaatta 77607988
Query: 1401 cctgtcacgggtattggctgcccggaattcctgcccgaaagtgggccagggaattcacaa 1460
| ||||| |||||||||||||| || |||| |||| ||| |||||| |||||| |||||
Sbjct: 77607989 catgtca-gggtattggctgccagggattcatgcctgaaggtgggcaagggaagtcacag 77608047
Query: 1461 acccctgaacttgccaaggctcttcctggggct 1493
|||| ||| || |||||||||||||||||||
Sbjct: 77608048 acccgtgacactggcaaggctcttcctggggct 77608080
Score = 297 bits (150), Expect = 9e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 835 ggtacctgtctcacactgagctggccccactgcgtgcgcccctcatccccatggagcact 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77606948 ggtacctgtctcacactgagctggccccactgcgtgcgcccctcatccccatggagcact 77607007
Query: 895 gcaccacccgcttcttccagacctgcgacctggacaatgacaagtacattgccctggatg 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77607008 gcaccacccgcttcttccagacctgcgacctggacaatgacaagtacattgccctggatg 77607067
Query: 955 agtgggccggctgcttcggcatcaaggagc 984
||||||||||||||||||||||||||||||
Sbjct: 77607068 agtgggccggctgcttcggcatcaaggagc 77607097
Score = 293 bits (148), Expect = 1e-76
Identities = 151/152 (99%)
Strand = Plus / Plus
Query: 687 gtgaagaagatccacgagaatgagaagcgcctggaggctggagaccaccccgtggagctg 746
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 77604793 gtgaagaagatccacgagaatgagaagcgcctggaggccggagaccaccccgtggagctg 77604852
Query: 747 ctggcccgggacttcgagaagaactacaacatgtacatcttccccgtgcactggcagttc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77604853 ctggcccgggacttcgagaagaactacaacatgtacatcttccccgtgcactggcagttc 77604912
Query: 807 gggcagctggaccagcaccccattgatgggta 838
||||||||||||||||||||||||||||||||
Sbjct: 77604913 gggcagctggaccagcaccccattgatgggta 77604944
Score = 248 bits (125), Expect = 7e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 564 tgcctggactccgagctgactgaattccccctgcgcatgcgggactggctcaagaacgtc 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77576990 tgcctggactccgagctgactgaattccccctgcgcatgcgggactggctcaagaacgtc 77576931
Query: 624 ctggtcaccttgtacgagagggatgagaacaacaaccttctgaccgagaagcagaagctg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77576930 ctggtcaccttgtacgagagggatgagaacaacaaccttctgaccgagaagcagaagctg 77576871
Query: 684 cgagt 688
|||||
Sbjct: 77576870 cgagt 77576866
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 310 acccctgccagaaccaccactgcaaacacggcaaggtgtgcgagctggacgagaacaact 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77581264 acccctgccagaaccaccactgcaaacacggcaaggtgtgcgagctggacgagaacaact 77581205
Query: 370 cccccatgtgcgtgtgccaggaccccaccagctgccccgcccccatcggcgagtttgaga 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77581204 cccccatgtgcgtgtgccaggaccccaccagctgccccgcccccatcggcgagtttgaga 77581145
Query: 430 aggt 433
||||
Sbjct: 77581144 aggt 77581141
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 430 aggtatgcagcaatgacaacaagacctttgactcttcctgccacttctttgccaccaagt 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77579363 aggtatgcagcaatgacaacaagacctttgactcttcctgccacttctttgccaccaagt 77579304
Query: 490 gcacactggagggcaccaagaagggccacaagctccacctggactacatcggaccttgca 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77579303 gcacactggagggcaccaagaagggccacaagctccacctggactacatcggaccttgca 77579244
Query: 550 aat 552
|||
Sbjct: 77579243 aat 77579241
Score = 186 bits (94), Expect = 2e-44
Identities = 97/98 (98%)
Strand = Plus / Minus
Query: 1 ggtttcctgttgccaggctctaaacccctcgacattcccgcagaccttcagactgcccgg 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 77594892 ggtttcctgttgccaggctctaaacccctccacattcccgcagaccttcagactgcccgg 77594833
Query: 61 agcccgctcgcctgctgcctgcctgcctgccactgagg 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 77594832 agcccgctcgcctgctgcctgcctgcctgccactgagg 77594795
Score = 186 bits (94), Expect = 2e-44
Identities = 97/98 (98%)
Strand = Plus / Minus
Query: 1 ggtttcctgttgccaggctctaaacccctcgacattcccgcagaccttcagactgcccgg 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 77689642 ggtttcctgttgccaggctctaaacccctccacattcccgcagaccttcagactgcccgg 77689583
Query: 61 agcccgctcgcctgctgcctgcctgcctgccactgagg 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 77689582 agcccgctcgcctgctgcctgcctgcctgccactgagg 77689545
Score = 178 bits (90), Expect = 6e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 220 aggtacctgtgggcgccaaccctgtccaggtggaagtaggagaatttgatgacggtgctg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77582782 aggtacctgtgggcgccaaccctgtccaggtggaagtaggagaatttgatgacggtgctg 77582723
Query: 280 aggaagccgaggaggaggtggtggctgaaa 309
||||||||||||||||||||||||||||||
Sbjct: 77582722 aggaagccgaggaggaggtggtggctgaaa 77582693
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 96 agggttcccagcaccatgagggcctggatcttcttcctcctttgcctggccgggaaggcc 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77584749 agggttcccagcaccatgagggcctggatcttcttcctcctttgcctggccgggaaggcc 77584690
Query: 156 ttggcagcccct 167
||||||||||||
Sbjct: 77584689 ttggcagcccct 77584678
>gb|GL894053.2| Sus scrofa unplaced genomic scaffold ChrUScaf1937
Length = 64625
Score = 626 bits (316), Expect = e-177
Identities = 439/473 (92%), Gaps = 6/473 (1%)
Strand = Plus / Plus
Query: 985 aggacatcgacaaggatctcgtgatctaagccccgcctcctcccgcagaaccagattccc 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60857 aggacatcgacaaggatctcgtgatctaagccccgcctcctcccgcagaaccagattccc 60916
Query: 1045 tctctctgcccttcccctcctcctgttctccc-aatgtttaaaatgtttggatggtttgt 1103
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 60917 tctctctgcccttcccctcctcctgttctccccaatgtttaaaatgtttggatggtttgt 60976
Query: 1104 cgttctgcctggggaccaggtgctaatatagatttcaatgaatacattaacggtgccaaa 1163
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 60977 cgttctgcctggggacaaggtgctaatatagatttcaatgaatacattaacggtgctaaa 61036
Query: 1164 cagggaaattttaacccaagtcatgacattcttagctgtaactcagctcgcacggcctct 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61037 cagggaaattttaacccaagtcatgacattcttagctgtaactcagctcgcacggcctct 61096
Query: 1224 tgctctcccactaa-gagcccctttctctc-tgccatttgcagctc-tgccccttgtctt 1280
||||| |||||||| |||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct: 61097 tgctcacccactaaggagcccatttctctcttgccatttgcagctcttgccccttgtctt 61156
Query: 1281 antgacctgtgggtggaaactgatctgttcaagtctgcccttcaacncacgttgcatccc 1340
| |||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct: 61157 agtgacgtgtgggtggaaactgatctgttcaagtctg-ccttcaacgcacgttgcatctc 61215
Query: 1341 ccattttccttccttttcgtttgaaaacaacaccccccnaaagagattttgtgttaaata 1400
| |||||| ||| ||| |||||||| ||||| | | | |||||||||||||||| ||
Sbjct: 61216 cgattttcattcttttctgtttgaaactaacactcacagagagagattttgtgttaatta 61275
Query: 1401 cctgtcacgggtattggctgcccggaattcctgcccgaaagtgggccagggaa 1453
| ||||| |||||||||||||| || |||| |||| ||| |||||| ||||||
Sbjct: 61276 catgtca-gggtattggctgccagggattcatgcctgaaggtgggcaagggaa 61327
Score = 293 bits (148), Expect = 1e-76
Identities = 151/152 (99%)
Strand = Plus / Plus
Query: 687 gtgaagaagatccacgagaatgagaagcgcctggaggctggagaccaccccgtggagctg 746
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 57410 gtgaagaagatccacgagaatgagaagcgcctggaggccggagaccaccccgtggagctg 57469
Query: 747 ctggcccgggacttcgagaagaactacaacatgtacatcttccccgtgcactggcagttc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57470 ctggcccgggacttcgagaagaactacaacatgtacatcttccccgtgcactggcagttc 57529
Query: 807 gggcagctggaccagcaccccattgatgggta 838
||||||||||||||||||||||||||||||||
Sbjct: 57530 gggcagctggaccagcaccccattgatgggta 57561
Score = 248 bits (125), Expect = 7e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 564 tgcctggactccgagctgactgaattccccctgcgcatgcgggactggctcaagaacgtc 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56334 tgcctggactccgagctgactgaattccccctgcgcatgcgggactggctcaagaacgtc 56393
Query: 624 ctggtcaccttgtacgagagggatgagaacaacaaccttctgaccgagaagcagaagctg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56394 ctggtcaccttgtacgagagggatgagaacaacaaccttctgaccgagaagcagaagctg 56453
Query: 684 cgagt 688
|||||
Sbjct: 56454 cgagt 56458
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 430 aggtatgcagcaatgacaacaagacctttgactcttcctgccacttctttgccaccaagt 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54826 aggtatgcagcaatgacaacaagacctttgactcttcctgccacttctttgccaccaagt 54885
Query: 490 gcacactggagggcaccaagaagggccacaagctccacctggactacatcggaccttgca 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54886 gcacactggagggcaccaagaagggccacaagctccacctggactacatcggaccttgca 54945
Query: 550 aat 552
|||
Sbjct: 54946 aat 54948
Score = 240 bits (121), Expect = 2e-60
Identities = 124/125 (99%)
Strand = Plus / Plus
Query: 860 cccactgcgtgcgcccctcatccccatggagcactgcaccacccgcttcttccagacctg 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60197 cccactgcgtgcgcccctcatccccatggagcactgcaccacccgcttcttccagacctg 60256
Query: 920 cgacctggacaatgacaagtacattgccctggatgagtgggccggctgcttcggcatcaa 979
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 60257 cgacctggacaatgacaagtacattgctctggatgagtgggccggctgcttcggcatcaa 60316
Query: 980 ggagc 984
|||||
Sbjct: 60317 ggagc 60321
Score = 200 bits (101), Expect = 2e-48
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 310 acccctgccagaaccaccactgcaaacacggcaaggtgtgcgagctggacgagaacaact 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52619 acccctgccagaaccaccactgcaaacacggcaaggtgtgcgagctggacgagaacaact 52678
Query: 370 cccccatgtgcgtgtgccaggaccccaccagctgccccgccccca 414
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 52679 cccccatgtgcgtgtgccaggaccccaccagctgccctgccccca 52723
Score = 178 bits (90), Expect = 6e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 220 aggtacctgtgggcgccaaccctgtccaggtggaagtaggagaatttgatgacggtgctg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50701 aggtacctgtgggcgccaaccctgtccaggtggaagtaggagaatttgatgacggtgctg 50760
Query: 280 aggaagccgaggaggaggtggtggctgaaa 309
||||||||||||||||||||||||||||||
Sbjct: 50761 aggaagccgaggaggaggtggtggctgaaa 50790
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 96 agggttcccagcaccatgagggcctggatcttcttcctcctttgcctggccgggaaggcc 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48342 agggttcccagcaccatgagggcctggatcttcttcctcctttgcctggccgggaaggcc 48401
Query: 156 ttggcagcccct 167
||||||||||||
Sbjct: 48402 ttggcagcccct 48413
Score = 113 bits (57), Expect = 3e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 168 caacaggaagccctgcctgatgagacggaggtggtggaggaaaccgtggccgaggta 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50106 caacaggaagccctgcctgatgagacggaggtggtggaggaaaccgtggccgaggta 50162
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,435,583
Number of extensions: 499
Number of successful extensions: 499
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 19
Length of query: 1493
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1472
Effective length of database: 2,808,413,156
Effective search space: 4133984165632
Effective search space used: 4133984165632
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)