Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000578
(996 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029955.1| 60S ribosomal protein L32 [Bos taurus]. 246 2e-65
>ref|NP_001029955.1| 60S ribosomal protein L32 [Bos taurus].
Length = 135
Score = 246 bits (629), Expect = 2e-65
Identities = 123/135 (91%), Positives = 124/135 (91%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
R+TNPNARLRSEENE
Sbjct: 121 RITNPNARLRSEENE 135
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,955,116
Number of extensions: 1008934
Number of successful extensions: 3035
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3026
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000578
(996 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532633.2| PREDICTED: similar to 60S ribosomal protein L32... 256 2e-68
Alignment gi|XP_535916.2| PREDICTED: similar to 60S ribosomal protein L32... 254 1e-67
Alignment gi|XP_859112.1| PREDICTED: similar to 60S ribosomal protein L32... 247 1e-65
Alignment gi|XP_849565.1| PREDICTED: similar to 60S ribosomal protein L32... 247 1e-65
Alignment gi|XP_858430.1| PREDICTED: similar to 60S ribosomal protein L32... 239 2e-63
Alignment gi|XP_858390.1| PREDICTED: similar to 60S ribosomal protein L32... 239 2e-63
Alignment gi|XP_535164.2| PREDICTED: similar to 60S ribosomal protein L32... 239 2e-63
Alignment gi|XP_534560.2| PREDICTED: similar to 60S ribosomal protein L32... 229 3e-60
Alignment gi|XP_535299.1| PREDICTED: similar to 60S ribosomal protein L32... 229 4e-60
Alignment gi|XP_853678.1| PREDICTED: similar to 60S ribosomal protein L32... 222 4e-58
>ref|XP_532633.2| PREDICTED: similar to 60S ribosomal protein L32 [Canis familiaris].
Length = 161
Score = 256 bits (655), Expect = 2e-68
Identities = 129/145 (88%), Positives = 130/145 (89%)
Frame = +1
Query: 64 GGGSHRPPGIMAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFK 243
GGGSHR GIMAALRPLV FIRHQSDRYVKIKRNWRKPRGIDNRV RRFK
Sbjct: 17 GGGSHRSLGIMAALRPLVKPKIVNKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVCRRFK 76
Query: 244 GQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKA 423
GQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAE+AHNVSSKN KA
Sbjct: 77 GQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEVAHNVSSKNPKA 136
Query: 424 IVERAAQLAIRVTNPNARLRSEENE 498
IVERAAQLAIRVTNPNARLRSEENE
Sbjct: 137 IVERAAQLAIRVTNPNARLRSEENE 161
>ref|XP_535916.2| PREDICTED: similar to 60S ribosomal protein L32 [Canis familiaris].
Length = 263
Score = 254 bits (648), Expect = 1e-67
Identities = 128/145 (88%), Positives = 128/145 (88%)
Frame = +1
Query: 64 GGGSHRPPGIMAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFK 243
GGGSHR GIM ALRPLV FIRHQSDRY KIK NWRKPRGIDNRV RRFK
Sbjct: 119 GGGSHRLLGIMTALRPLVKPKIVKKRTKKFIRHQSDRYAKIKHNWRKPRGIDNRVCRRFK 178
Query: 244 GQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKA 423
GQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKA
Sbjct: 179 GQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKA 238
Query: 424 IVERAAQLAIRVTNPNARLRSEENE 498
IVERAAQLAIRVTNPNARLRSEENE
Sbjct: 239 IVERAAQLAIRVTNPNARLRSEENE 263
>ref|XP_859112.1| PREDICTED: similar to 60S ribosomal protein L32 isoform 2 [Canis
familiaris].
Length = 135
Score = 247 bits (630), Expect = 1e-65
Identities = 124/135 (91%), Positives = 124/135 (91%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RVTNPNARLRSEENE
Sbjct: 121 RVTNPNARLRSEENE 135
>ref|XP_849565.1| PREDICTED: similar to 60S ribosomal protein L32 isoform 1 [Canis
familiaris].
Length = 135
Score = 247 bits (630), Expect = 1e-65
Identities = 124/135 (91%), Positives = 124/135 (91%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RVTNPNARLRSEENE
Sbjct: 121 RVTNPNARLRSEENE 135
>ref|XP_858430.1| PREDICTED: similar to 60S ribosomal protein L32 isoform 3 [Canis
familiaris].
Length = 135
Score = 239 bits (611), Expect = 2e-63
Identities = 120/135 (88%), Positives = 123/135 (91%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FI+HQSD+YVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIIKKRTKKFIQHQSDQYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
G+NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKN KAIVERAAQLAI
Sbjct: 61 GTNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNCKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RVTNPNARLRSEENE
Sbjct: 121 RVTNPNARLRSEENE 135
>ref|XP_858390.1| PREDICTED: similar to 60S ribosomal protein L32 isoform 2 [Canis
familiaris].
Length = 135
Score = 239 bits (611), Expect = 2e-63
Identities = 120/135 (88%), Positives = 123/135 (91%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FI+HQSD+YVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIIKKRTKKFIQHQSDQYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
G+NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKN KAIVERAAQLAI
Sbjct: 61 GTNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNCKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RVTNPNARLRSEENE
Sbjct: 121 RVTNPNARLRSEENE 135
>ref|XP_535164.2| PREDICTED: similar to 60S ribosomal protein L32 isoform 1 [Canis
familiaris].
Length = 135
Score = 239 bits (611), Expect = 2e-63
Identities = 120/135 (88%), Positives = 123/135 (91%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FI+HQSD+YVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIIKKRTKKFIQHQSDQYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
G+NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKN KAIVERAAQLAI
Sbjct: 61 GTNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNCKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RVTNPNARLRSEENE
Sbjct: 121 RVTNPNARLRSEENE 135
>ref|XP_534560.2| PREDICTED: similar to 60S ribosomal protein L32 [Canis familiaris].
Length = 149
Score = 229 bits (584), Expect = 3e-60
Identities = 118/137 (86%), Positives = 119/137 (86%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
M ALRPLV FI HQSDRYVKIK NW K RGIDNRVRRRFKGQILMP+IGY
Sbjct: 1 MVALRPLVKPKIIKKRTKKFIWHQSDRYVKIKHNWWKRRGIDNRVRRRFKGQILMPSIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
SNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 RSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE*T 504
RVTNPNARLRSEENE T
Sbjct: 121 RVTNPNARLRSEENEET 137
>ref|XP_535299.1| PREDICTED: similar to 60S ribosomal protein L32 [Canis familiaris].
Length = 135
Score = 229 bits (583), Expect = 4e-60
Identities = 118/135 (87%), Positives = 119/135 (88%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALR LV FI HQSDRYVKIK NWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRLLVRPKIVKKRTKKFIWHQSDRYVKIKCNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKHMLPSGF KFLVHNVKELEVLLMCNKSYCA+IAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFWKFLVHNVKELEVLLMCNKSYCAKIAHNVSSKNRKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RVT PNARLRSEENE
Sbjct: 121 RVTIPNARLRSEENE 135
>ref|XP_853678.1| PREDICTED: similar to 60S ribosomal protein L32 [Canis familiaris].
Length = 141
Score = 222 bits (566), Expect = 4e-58
Identities = 109/112 (97%), Positives = 111/112 (99%)
Frame = +1
Query: 163 QSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVK 342
+SDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVK
Sbjct: 30 KSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVK 89
Query: 343 ELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 498
ELEVLL CNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP+ARLRSEENE
Sbjct: 90 ELEVLLTCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPSARLRSEENE 141
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,625,467
Number of extensions: 891412
Number of successful extensions: 3369
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3343
Number of HSP's successfully gapped: 30
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000578
(996 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007075.1| 60S ribosomal protein L32 [Homo sapiens]. 247 1e-65
Alignment gi|NP_001007074.1| 60S ribosomal protein L32 [Homo sapiens]. 247 1e-65
Alignment gi|NP_000985.1| 60S ribosomal protein L32 [Homo sapiens]. 247 1e-65
>ref|NP_001007075.1| 60S ribosomal protein L32 [Homo sapiens].
Length = 135
Score = 247 bits (630), Expect = 1e-65
Identities = 124/135 (91%), Positives = 124/135 (91%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RVTNPNARLRSEENE
Sbjct: 121 RVTNPNARLRSEENE 135
>ref|NP_001007074.1| 60S ribosomal protein L32 [Homo sapiens].
Length = 135
Score = 247 bits (630), Expect = 1e-65
Identities = 124/135 (91%), Positives = 124/135 (91%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RVTNPNARLRSEENE
Sbjct: 121 RVTNPNARLRSEENE 135
>ref|NP_000985.1| 60S ribosomal protein L32 [Homo sapiens].
Length = 135
Score = 247 bits (630), Expect = 1e-65
Identities = 124/135 (91%), Positives = 124/135 (91%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RVTNPNARLRSEENE
Sbjct: 121 RVTNPNARLRSEENE 135
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,006,673
Number of extensions: 878874
Number of successful extensions: 3207
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3196
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000578
(996 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_742083.1| 60S ribosomal protein L32 [Mus musculus]. 247 1e-65
Alignment gi|XP_003086045.1| PREDICTED: 60S ribosomal protein L32-like [M... 246 2e-65
Alignment gi|NP_001095031.2| ribosomal protein L32-like [Mus musculus]. 226 2e-59
Alignment gi|NP_001078979.1| hypothetical protein LOC245405 [Mus musculus]. 222 4e-58
>ref|NP_742083.1| 60S ribosomal protein L32 [Mus musculus].
Length = 135
Score = 247 bits (630), Expect = 1e-65
Identities = 124/135 (91%), Positives = 124/135 (91%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RVTNPNARLRSEENE
Sbjct: 121 RVTNPNARLRSEENE 135
>ref|XP_003086045.1| PREDICTED: 60S ribosomal protein L32-like [Mus musculus].
Length = 135
Score = 246 bits (629), Expect = 2e-65
Identities = 123/135 (91%), Positives = 124/135 (91%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
R+TNPNARLRSEENE
Sbjct: 121 RITNPNARLRSEENE 135
>ref|NP_001095031.2| ribosomal protein L32-like [Mus musculus].
Length = 133
Score = 226 bits (577), Expect = 2e-59
Identities = 116/135 (85%), Positives = 119/135 (88%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FIRHQSDRYVKIKRNWRKPRGID+RVRRR GQILMPNIGY
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDHRVRRR--GQILMPNIGY 58
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKH LPS FRKFLVHNVKELEVLLMCN+SYCAEIAH V+SKNRKAIVERAAQLAI
Sbjct: 59 GSNKKTKHTLPSSFRKFLVHNVKELEVLLMCNRSYCAEIAHKVTSKNRKAIVERAAQLAI 118
Query: 454 RVTNPNARLRSEENE 498
RVTNPNARLRSEENE
Sbjct: 119 RVTNPNARLRSEENE 133
>ref|NP_001078979.1| hypothetical protein LOC245405 [Mus musculus].
Length = 135
Score = 222 bits (565), Expect = 4e-58
Identities = 113/135 (83%), Positives = 118/135 (87%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FIRHQSDRYVKIK+NW KPRGI NRVRRRFKG+ILMPNI Y
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKQNWWKPRGIYNRVRRRFKGEILMPNISY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
SNKKTKHMLPS F KFLVH+VKELEVLLMCNKSYCAEIAHNVSSKNR+AIVERAAQLAI
Sbjct: 61 RSNKKTKHMLPSSFCKFLVHDVKELEVLLMCNKSYCAEIAHNVSSKNREAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RV+NPNARLRSEENE
Sbjct: 121 RVSNPNARLRSEENE 135
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,783,180
Number of extensions: 748256
Number of successful extensions: 2806
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2783
Number of HSP's successfully gapped: 4
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000578
(996 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361832.1| PREDICTED: 60S ribosomal protein L32-like, p... 254 5e-68
Alignment gi|NP_001001636.1| 60S ribosomal protein L32 [Sus scrofa]. 247 8e-66
Alignment gi|XP_003121309.1| PREDICTED: 60S ribosomal protein L32-like [S... 224 6e-59
Alignment gi|XP_003129772.1| PREDICTED: 60S ribosomal protein L32-like is... 212 3e-55
Alignment gi|XP_003125204.1| PREDICTED: 60S ribosomal protein L32-like [S... 208 4e-54
>ref|XP_003361832.1| PREDICTED: 60S ribosomal protein L32-like, partial [Sus scrofa].
Length = 187
Score = 254 bits (649), Expect = 5e-68
Identities = 126/137 (91%), Positives = 126/137 (91%)
Frame = +1
Query: 52 ALPYGGGSHRPPGIMAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVR 231
ALPYGGGSHRPPGIMAALRPLV FIRHQSDRYVKIKRNWRKPRGIDNRVR
Sbjct: 51 ALPYGGGSHRPPGIMAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVR 110
Query: 232 RRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSK 411
RRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSK
Sbjct: 111 RRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSK 170
Query: 412 NRKAIVERAAQLAIRVT 462
NRKAIVERAAQLAIRVT
Sbjct: 171 NRKAIVERAAQLAIRVT 187
>ref|NP_001001636.1| 60S ribosomal protein L32 [Sus scrofa].
Length = 135
Score = 247 bits (630), Expect = 8e-66
Identities = 124/135 (91%), Positives = 124/135 (91%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPLV FIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RVTNPNARLRSEENE
Sbjct: 121 RVTNPNARLRSEENE 135
>ref|XP_003121309.1| PREDICTED: 60S ribosomal protein L32-like [Sus scrofa].
Length = 135
Score = 224 bits (571), Expect = 6e-59
Identities = 110/135 (81%), Positives = 120/135 (88%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPL+ FIRHQSD VKIK+NW+KPRGIDNRVRR+FKGQILMPNIGY
Sbjct: 1 MAALRPLMKPKIIKKRTKKFIRHQSDGCVKIKQNWQKPRGIDNRVRRKFKGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKHMLPSGFRKFLVH +KEL+VLL+CNKSYCAEI+HN+SSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFRKFLVHTLKELKVLLICNKSYCAEISHNISSKNRKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RVTNPN RLRS+ENE
Sbjct: 121 RVTNPNTRLRSKENE 135
>ref|XP_003129772.1| PREDICTED: 60S ribosomal protein L32-like isoform 1 [Sus scrofa].
Length = 135
Score = 212 bits (539), Expect = 3e-55
Identities = 104/135 (77%), Positives = 118/135 (87%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MA LRPL+ FI HQSD+YVKIKRNW+KPRG++NRV+RRF+GQILMPNIGY
Sbjct: 1 MATLRPLMKPKIIKKRTKKFIWHQSDQYVKIKRNWQKPRGLNNRVQRRFRGQILMPNIGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKHML SGF+KFLVH VKEL++LLMCNKSYCAEIAH+VSSKN KAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLLSGFQKFLVHGVKELDMLLMCNKSYCAEIAHSVSSKNHKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RV++PNARL SEEN+
Sbjct: 121 RVSSPNARLHSEENK 135
>ref|XP_003125204.1| PREDICTED: 60S ribosomal protein L32-like [Sus scrofa].
Length = 135
Score = 208 bits (529), Expect = 4e-54
Identities = 106/135 (78%), Positives = 112/135 (82%)
Frame = +1
Query: 94 MAALRPLVXXXXXXXXXXXFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 273
MAALRPL+ FI HQSDRY KIK NW KPRGI+NRV RRFKGQILMPN GY
Sbjct: 1 MAALRPLLKPKTVKKRTKKFIWHQSDRYAKIKWNWWKPRGINNRVHRRFKGQILMPNTGY 60
Query: 274 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 453
GSNKKTKHMLPSGF+KFLV+NVKELEVLLMCNKS+ AEI HNVSSKN KAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFQKFLVYNVKELEVLLMCNKSHSAEIVHNVSSKNCKAIVERAAQLAI 120
Query: 454 RVTNPNARLRSEENE 498
RVTNP ARL +ENE
Sbjct: 121 RVTNPKARLHGQENE 135
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,797,517
Number of extensions: 851366
Number of successful extensions: 2108
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2102
Number of HSP's successfully gapped: 5
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000578
(996 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 712 0.0
Sscrofa_Chr03 609 e-171
Sscrofa_Chr09 579 e-162
Sscrofa_Chr13 543 e-152
Sscrofa_Chr08 478 e-132
Sscrofa_Chr05 472 e-130
Sscrofa_Chr07 450 e-124
gb|GL892872.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 428 e-117
Sscrofa_Chr02 426 e-116
gb|GL894593.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 315 3e-83
>Sscrofa_Chr01
|| Length = 315321322
Score = 712 bits (359), Expect = 0.0
Identities = 437/463 (94%)
Strand = Plus / Plus
Query: 42 ctcttcctcggcgctgccttacggaggtggcagccatcgcccgcctggcatcatggctgc 101
|||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 56348810 ctcttcctcggcactgccttacggaggtggcagccatctcccacctggcatcatggctgc 56348869
Query: 102 tctcagaccccttgtgaagcccaagatcgtcaaaaagaggaccaagaagttcatccggca 161
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 56348870 tctcagacccctcatgaagcccaagatcatcaaaaagaggaccaagaagttcatccggca 56348929
Query: 162 ccagtcagaccgatatgtcaaaattaagcggaactggcggaaacccagaggcattgacaa 221
||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 56348930 ccagtcagatggatgtgtcaaaattaagcagaactggcagaaacccagaggcattgacaa 56348989
Query: 222 cagggtgcggagaaggttcaagggccagatcttgatgcccaacattggttatgggagcaa 281
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56348990 cagggtgcggagaaagttcaagggccagatcttgatgcccaacattggttatgggagcaa 56349049
Query: 282 caagaaaacaaagcacatgctgcccagtggcttccggaagtttctggtacacaatgtaaa 341
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 56349050 caagaaaacaaagcacatgctgcccagtggcttccggaagtttctggtacacactttaaa 56349109
Query: 342 agagcttgaagtgctgctaatgtgcaacaaatcatactgtgctgagattgctcacaacgt 401
|||||| ||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
Sbjct: 56349110 ggagcttaaagtgctgctaatatgcaacaaatcttactgtgctgagatttctcacaacat 56349169
Query: 402 ctcttccaagaaccgcaaagccatcgtcgagagagcggcccaactggccatcagggtcac 461
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 56349170 ctcttccaagaaccgcaaagccattgtggagagagcagcccaactggccatcagggtcac 56349229
Query: 462 caatcccaatgccaggctgcgcagcgaagaaaatgaatagaca 504
||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 56349230 caatcccaacaccaggctgcgcagcaaagaaaatgaatagaca 56349272
Score = 426 bits (215), Expect = e-116
Identities = 348/391 (89%), Gaps = 1/391 (0%)
Strand = Plus / Minus
Query: 87 tggcatcatggctgctctcagaccccttgtgaagcccaagatcgtcaaaaagaggaccaa 146
|||||||||||| | |||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct: 94701583 tggcatcatggccgatctcgaacctgttgtgaagcccaagatcatcaaaaagaggaccaa 94701524
Query: 147 gaagttcatccggcaccagtcagaccgatatgtcaaaattaagcggaactggcggaaacc 206
||||||||| ||||||||||||||| ||||||||||||| ||| ||||||| |||||
Sbjct: 94701523 gaagttcatatggcaccagtcagaccaatatgtcaaaattcagcagaactggtggaaatt 94701464
Query: 207 cagaggcattgacaacagggtgcggagaaggttcaagggccagatcttgatgcccaacat 266
||||| || |||||||||| || |||| |||||||||||||||||||||||| |||||
Sbjct: 94701463 cagagacactgacaacaggatgtatagaaagttcaagggccagatcttgatgcctaacat 94701404
Query: 267 tggttatgggagcaacaagaaaacaaagcacatgctgcccagtggcttccggaagtttct 326
| | |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 94701403 ttgctatgggagcaacaagaaaacaaagcacatgctgcccagtgacttctggaagtttct 94701344
Query: 327 ggtacacaatgtaaaagagcttgaagtgctgctaatgtgcaacaaatcatactgtgctga 386
||||||| ||||||| |||||||||||||| || |||||||| ||||| || |||| |||
Sbjct: 94701343 ggtacaccatgtaaaggagcttgaagtgctactgatgtgcaataaatcttattgtgttga 94701284
Query: 387 gattgctcacaacgtctcttccaagaaccgcaaagccatcgtcgagagagcggcccaact 446
|| |||||||||| ||||||||||||||||||||||| | || |||| ||||||||| ||
Sbjct: 94701283 ga-tgctcacaacatctcttccaagaaccgcaaagcctttgtggagacagcggcccagct 94701225
Query: 447 ggccatcagggtcaccaatcccaatgccagg 477
|||||||||||||||||||||||||| ||||
Sbjct: 94701224 ggccatcagggtcaccaatcccaatgtcagg 94701194
Score = 123 bits (62), Expect = 2e-25
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 613 cagatgtggtttagaccccaagttgaaatgaatagtgggctcgtgtgcacattgttaatg 672
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 56349381 cagatgtggtttagaccccaagttgaaatgaatagtgggctcgtgtacacattgtatctg 56349440
Query: 673 tgttaataaaaccatgaaactt 694
||||||||||||||| ||||||
Sbjct: 56349441 tgttaataaaaccataaaactt 56349462
Score = 117 bits (59), Expect = 1e-23
Identities = 250/312 (80%), Gaps = 5/312 (1%)
Strand = Plus / Minus
Query: 193 aactggcggaaacccagaggcattgacaacagggtgcggagaaggttcaagggccagatc 252
||||||| ||||||||||| || |||||| ||| ||| |||||| | |||| |||| |||
Sbjct: 134435262 aactggcagaaacccagagacaatgacaataggatgcagagaagatccaagtgccatatc 134435203
Query: 253 ttgatgcccaacattggttatgggagcaacaagaaaacaaagcacatgctgcccagtggc 312
|||||||||| |||||| || | |||||||||||| || ||||||||| | ||||||
Sbjct: 134435202 ttgatgcccagtattggtcatagctgcaacaagaaaatgaaacacatgctgtctagtggc 134435143
Query: 313 ttccggaagtttctggtacacaatgtaaaagagcttgaagtgctgctaatgtgcaacaaa 372
||| ||||| |||||| | | | ||| |||| |||||||| || ||||||| ||||
Sbjct: 134435142 ttctagaagtctctggtctatagcatcaaaaagctggaagtgctactgatgtgcagcaaa 134435083
Query: 373 tcatactgtgctgagattgctcacaacgtctcttccaagaaccgcaaagccatcgtcgag 432
|| |||||||||| ||| |||| | || || |||||||||| |||||||| | | ||
Sbjct: 134435082 tcttactgtgctgcgatggctc---atgtttcctccaagaacctcaaagccaccatggaa 134435026
Query: 433 agagcggcccaactggccatcagggtcaccaatcccaatgccaggctgcgcagcgaagaa 492
|||| ||| ||||||||| | ||||||||||||| |||||| ||| ||| ||||||
Sbjct: 134435025 agagtagcctcactggccat--gagtcaccaatcccagcgccaggatgcacagtgaagaa 134434968
Query: 493 aatgaatagaca 504
||||||||||||
Sbjct: 134434967 aatgaatagaca 134434956
Score = 83.8 bits (42), Expect = 2e-13
Identities = 127/154 (82%), Gaps = 1/154 (0%)
Strand = Plus / Plus
Query: 272 atgggagcaacaagaaaacaaagcacatgctgcccagtggcttccggaagtttctggtac 331
|||||| ||||||| ||||||||||||||||||| |||||||| || ||| ||||| |
Sbjct: 143259050 atgggaacaacaaggaaacaaagcacatgctgcctggtggcttctgggggttcctggtcc 143259109
Query: 332 acaatgtaaaagagcttgaagtgctgctaatgtgcaacaaatcatactgtgctgagattg 391
|||| | || ||||||||||||||| | ||||||| ||||| || ||| || ||| ||
Sbjct: 143259110 acaacctcaaggagcttgaagtgctg-tgatgtgcagcaaattttagtgtacttagactg 143259168
Query: 392 ctcacaacgtctcttccaagaaccgcaaagccat 425
|| |||||||||| || |||||| |||||||||
Sbjct: 143259169 cttacaacgtctcctctgagaaccacaaagccat 143259202
Score = 58.0 bits (29), Expect = 1e-05
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 116 tgaagcccaagatcgtcaaaaagaggaccaagaagttcatccggcaccagtcagaccgat 175
||||||| |||||| ||||||||| |||||||||||||| | |||| ||||| || |
Sbjct: 143258910 tgaagccgaagatcaccaaaaagagcaccaagaagttcatgcagcactggtcaggccagt 143258969
Query: 176 atgtcaaaattaagcggaactggcggaaacccagaggcattgaca 220
||||||| | |||| | ||||||| | |||||||| ||||||||
Sbjct: 143258970 atgtcaagaataagtgtaactggcaggaacccagaatcattgaca 143259014
Score = 58.0 bits (29), Expect = 1e-05
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 201 gaaacccagaggcattgacaacagggtgcggagaaggttcaagggccagatcttgatgcc 260
||||| |||||| ||||| | |||| | | |||||| ||| |||||||| ||||||||||
Sbjct: 303716070 gaaactcagaggtattgatagcaggatccagagaagattccagggccaggtcttgatgcc 303716129
Query: 261 caacattggttatgggagcaacaag 285
| | | ||||||||||| |||||||
Sbjct: 303716130 ccagagtggttatgggaacaacaag 303716154
>Sscrofa_Chr03
|| Length = 144787322
Score = 609 bits (307), Expect = e-171
Identities = 425/463 (91%), Gaps = 1/463 (0%)
Strand = Plus / Minus
Query: 41 gctcttcctcggcgctgccttacggaggtggcagccatcgccc-gcctggcatcatggct 99
|||||||||| ||||||| ||| ||||||||||||||| || |||||||||||||||
Sbjct: 98585079 gctcttcctcagcgctgctttatggaggtggcagccatttccttgcctggcatcatggcc 98585020
Query: 100 gctctcagaccccttgtgaagcccaagatcgtcaaaaagaggaccaagaagttcatccgg 159
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 98585019 gctctcagacccctcctgaagcccaagactgtcaaaaagaggaccaagaagttcatctgg 98584960
Query: 160 caccagtcagaccgatatgtcaaaattaagcggaactggcggaaacccagaggcattgac 219
||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||
Sbjct: 98584959 caccagtcagaccgatatgccaaaattaagtggaactggtggaaacccagaggcattaac 98584900
Query: 220 aacagggtgcggagaaggttcaagggccagatcttgatgcccaacattggttatgggagc 279
||||| |||| |||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 98584899 aacagagtgcatagaaggttcaagggccagatcttgatgcccaatactggttatgggagc 98584840
Query: 280 aacaagaaaacaaagcacatgctgcccagtggcttccggaagtttctggtacacaatgta 339
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 98584839 aacaagaaaacaaagcacatgctgcccagtggcttccagaagtttctggtatacaatgta 98584780
Query: 340 aaagagcttgaagtgctgctaatgtgcaacaaatcatactgtgctgagattgctcacaac 399
|| |||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct: 98584779 aaggagcttgaagtgctgctaatgtgcaacaaatctcactctgctgagattgttcacaac 98584720
Query: 400 gtctcttccaagaaccgcaaagccatcgtcgagagagcggcccaactggccatcagggtc 459
||||||||||||||| |||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 98584719 gtctcttccaagaactgcaaagccattgtggagagagcggcccagctggccatcagggtc 98584660
Query: 460 accaatcccaatgccaggctgcgcagcgaagaaaatgaataga 502
|||||||| || |||||||||| | || |||||||||||||||
Sbjct: 98584659 accaatcctaaagccaggctgcacggccaagaaaatgaataga 98584617
Score = 99.6 bits (50), Expect = 3e-18
Identities = 74/82 (90%)
Strand = Plus / Minus
Query: 613 cagatgtggtttagaccccaagttgaaatgaatagtgggctcgtgtgcacattgttaatg 672
||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||| ||
Sbjct: 98584509 cagatgtggcttagaccccaagctgaaatgaatagtgggctcatgtgcatattgtgtctg 98584450
Query: 673 tgttaataaaaccatgaaactt 694
||||||||||||||| ||||||
Sbjct: 98584449 tgttaataaaaccatcaaactt 98584428
>Sscrofa_Chr09
|| Length = 153670197
Score = 579 bits (292), Expect = e-162
Identities = 420/460 (91%), Gaps = 2/460 (0%)
Strand = Plus / Minus
Query: 45 ttcctcggcgctgccttacggaggtggcagccatcgcccgcctggcatcatggctgctct 104
||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct: 21940489 ttccttggcgctgccttacggaggtggcagccatctcca-cctggcatcatggccactct 21940431
Query: 105 cagaccccttgtgaagcccaagatcgtcaaaaagaggaccaagaagttcatccggcacca 164
||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 21940430 cagacccctcatgaagcccaagatcatcaaaaagaggaccaagaagttcatctggcacca 21940371
Query: 165 gtcagaccgatatgtcaaaattaagcggaactggcggaaacccagaggcattgacaacag 224
|||||||| |||||||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct: 21940370 gtcagaccaatatgtcaaaat-aagcggaactggcagaaacccagaggcattaacaacag 21940312
Query: 225 ggtgcggagaaggttcaagggccagatcttgatgcccaacattggttatgggagcaacaa 284
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 21940311 agtgcagagaaggttcaggggccagatcttgatgcccaacattggttatgggagcaataa 21940252
Query: 285 gaaaacaaagcacatgctgcccagtggcttccggaagtttctggtacacaatgtaaaaga 344
|||||||||||||||||||| ||||||||||| ||||||||||||||| |||||| ||
Sbjct: 21940251 gaaaacaaagcacatgctgctcagtggcttccaaaagtttctggtacacggtgtaaagga 21940192
Query: 345 gcttgaagtgctgctaatgtgcaacaaatcatactgtgctgagattgctcacaacgtctc 404
|||||| ||||||| |||||||||||||| |||||||||||||||||||| | ||||||
Sbjct: 21940191 gcttgacatgctgctgatgtgcaacaaatcttactgtgctgagattgctcatagcgtctc 21940132
Query: 405 ttccaagaaccgcaaagccatcgtcgagagagcggcccaactggccatcagggtcaccaa 464
||||||||||| ||||||||| || |||||||||||||| ||||||||||||||| |||
Sbjct: 21940131 ttccaagaaccacaaagccattgtggagagagcggcccagctggccatcagggtctccag 21940072
Query: 465 tcccaatgccaggctgcgcagcgaagaaaatgaatagaca 504
||||||||||||||||| ||| |||||||| ||||||||
Sbjct: 21940071 tcccaatgccaggctgcacagtgaagaaaacaaatagaca 21940032
>Sscrofa_Chr13
|| Length = 218635234
Score = 543 bits (274), Expect = e-152
Identities = 401/441 (90%), Gaps = 3/441 (0%)
Strand = Plus / Plus
Query: 64 ggaggtggcagccatcgcccgcctggcatcatggctgctctcagaccccttgtgaagccc 123
|||||||||||||||| || ||||||||||| || |||||| ||||||||||||||||
Sbjct: 202514877 ggaggtggcagccatctcctgcctggcatcacagccactctcaaaccccttgtgaagccc 202514936
Query: 124 aagatcgtcaaaaagaggaccaagaagttcatccggcaccagtcagaccgatatgtcaaa 183
|||||| |||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 202514937 aagatcatcaaaaagaggaccaagaagttcacatggcaccagtcagac--atgtgtcaaa 202514994
Query: 184 attaagcggaactggcggaaacccagaggcattgacaacagggtgcggagaaggttcaag 243
||||| | || |||| ||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 202514995 attaa-cagacctggaggaaacccagaggcattgacaacagggagtgtagaaggttcaag 202515053
Query: 244 ggccagatcttgatgcccaacattggttatgggagcaacaagaaaacaaagcacatgctg 303
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 202515054 ggccagatcttgatgcccaacataggttatgggagcaacaagaaaacaaagcacgtgctg 202515113
Query: 304 cccagtggcttccggaagtttctggtacacaatgtaaaagagcttgaagtgctgctaatg 363
||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||||| |||
Sbjct: 202515114 cccagtgccttctggaagtttctggtacaccatgtaaaggagcttgaagtgctgctgatg 202515173
Query: 364 tgcaacaaatcatactgtgctgagattgctcacaacgtctcttccaagaaccgcaaagcc 423
||| ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 202515174 tgcgacaaatcttactgtgctgagattgctctcaacgtttcttccaagaaccgcaaagcc 202515233
Query: 424 atcgtcgagagagcggcccaactggccatcagggtcaccaatcccaatgccaggctgcgc 483
|| || |||||||| ||||| |||||| ||||||||||||||||||| ||||||||||||
Sbjct: 202515234 attgtggagagagcagcccagctggccctcagggtcaccaatcccaaggccaggctgcgc 202515293
Query: 484 agcgaagaaaatgaatagaca 504
||| ||||| |||||||||||
Sbjct: 202515294 agcaaagaagatgaatagaca 202515314
Score = 420 bits (212), Expect = e-115
Identities = 248/256 (96%), Gaps = 3/256 (1%)
Strand = Plus / Minus
Query: 723 cagcttgttgaaaatttttctttcctgttcatgctctatggaatcttctatttgaaaggg 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76057698 cagcttgttgaaaatttttctttcctgttcatgctctatggaatcttctatttgaaaggg 76057639
Query: 783 gtttgtaaaggacatgcaatcttttccctttgaagg-cacaggcctctaggtgcccagac 841
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 76057638 gtttgtaaaggacatgcaatcttttcc-tttgaagggcacaggcctctaggtgcccagac 76057580
Query: 842 cagccttggccagctccaggtgggacacatccctcagagcaagtaggttccagcctcact 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76057579 cagccttggccagctccaggtgggacacatccctcagagcaagtaggttccagcctcact 76057520
Query: 902 ctgtaaaccctgggtggggtttgtgaaaaatgaagaaatgtgtgctgaagaatcctaat- 960
|||||||||||| ||||| |||||||| | ||| |||||||||||||||||||||||||
Sbjct: 76057519 ctgtaaaccctgtgtgggttttgtgaagattgaggaaatgtgtgctgaagaatcctaata 76057460
Query: 961 aaaatcttactccctt 976
||||||||||||||||
Sbjct: 76057459 aaaatcttactccctt 76057444
Score = 365 bits (184), Expect = 3e-98
Identities = 184/184 (100%)
Strand = Plus / Minus
Query: 188 agcggaactggcggaaacccagaggcattgacaacagggtgcggagaaggttcaagggcc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76060904 agcggaactggcggaaacccagaggcattgacaacagggtgcggagaaggttcaagggcc 76060845
Query: 248 agatcttgatgcccaacattggttatgggagcaacaagaaaacaaagcacatgctgccca 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76060844 agatcttgatgcccaacattggttatgggagcaacaagaaaacaaagcacatgctgccca 76060785
Query: 308 gtggcttccggaagtttctggtacacaatgtaaaagagcttgaagtgctgctaatgtgca 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76060784 gtggcttccggaagtttctggtacacaatgtaaaagagcttgaagtgctgctaatgtgca 76060725
Query: 368 acaa 371
||||
Sbjct: 76060724 acaa 76060721
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 372 atcatactgtgctgagattgctcacaacgtctcttccaagaaccgcaaagccatcgtcga 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76058049 atcatactgtgctgagattgctcacaacgtctcttccaagaaccgcaaagccatcgtcga 76057990
Query: 432 gagagcggcccaactggccatcagggtcaccaatcccaatgccaggctgcgcagcgaaga 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76057989 gagagcggcccaactggccatcagggtcaccaatcccaatgccaggctgcgcagcgaaga 76057930
Query: 492 aaatgaata 500
|||||||||
Sbjct: 76057929 aaatgaata 76057921
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 88 ggcatcatggctgctctcagaccccttgtgaagcccaagatcgtcaaaaagaggaccaag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76061577 ggcatcatggctgctctcagaccccttgtgaagcccaagatcgtcaaaaagaggaccaag 76061518
Query: 148 aagttcatccggcaccagtcagaccgatatgtcaaaattaag 189
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76061517 aagttcatccggcaccagtcagaccgatatgtcaaaattaag 76061476
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 613 cagatgtggtttagaccccaagttgaaatgaatagtgggctcgtgtgcacattgttaatg 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76057808 cagatgtggtttagaccccaagttgaaatgaatagtgggctcgtgtgcacattgttaatg 76057749
Query: 673 tgttaataaaaccatgaaactt 694
||||||||||||||||||||||
Sbjct: 76057748 tgttaataaaaccatgaaactt 76057727
Score = 111 bits (56), Expect = 7e-22
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 623 ttagaccccaagttgaaatgaatagtgggctcgtgtgcacattgttaatgtgttaataaa 682
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 202515429 ttagaccccaagttgaaatgaatagtgggctcatgtgcacattgtatctgtgttaataaa 202515488
Query: 683 accatgaaactt 694
||||||||||||
Sbjct: 202515489 accatgaaactt 202515500
Score = 87.7 bits (44), Expect = 1e-14
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 445 ctggccatcagggtcaccaatcccaatgccaggctgcgcagcgaagaaaatgaatagaca 504
|||||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct: 28805018 ctggccatcaaggtcaccaagcccaatgccaggctgtgcagcaaagaaaatgaatagaca 28804959
>Sscrofa_Chr08
|| Length = 148491826
Score = 478 bits (241), Expect = e-132
Identities = 405/456 (88%), Gaps = 4/456 (0%)
Strand = Plus / Minus
Query: 49 tcggcgctgccttacggaggtggcagccatcgcccgcctggcatcatggctgctctcaga 108
||||||||||||| ||||||||||||||||| ||||||||||||| |||| |||||||
Sbjct: 3048356 tcggcgctgccttgcggaggtggcagccatctcccgcctggcatcgtggcccgtctcaga 3048297
Query: 109 ccccttgtgaagcccaagatcgtcaaaaagaggaccaagaagttcatccggcaccagtca 168
||| | ||||||||||||| |||||| |||||||||||||||||| | ||| |||||||
Sbjct: 3048296 ccc-tcatgaagcccaagatggtcaaacagaggaccaagaagttcaccgggcgccagtca 3048238
Query: 169 gaccgatatgtcaaaattaagcggaactggcggaaacccagaggcattgacaacagggtg 228
|||| | |||||||||||||| ||||||||| ||||||||||||||||||||||||| |
Sbjct: 3048237 gacccgtgtgtcaaaattaagccgaactggcgcaaacccagaggcattgacaacagggcg 3048178
Query: 229 cggagaaggttcaagggccagatcttgatgcccaacattggttatgggagcaacaagaaa 288
| | ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 3048177 catcgtaggttcaagggccagatcttgatgcccaacactggttatgggagcaacacgaaa 3048118
Query: 289 acaaagcacatgctgcccagtggcttccggaagtttctggtacacaatgtaaaagagctt 348
|| ||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||||
Sbjct: 3048117 acttagcacatgctgcctcgtgccttccggaagtttctggtacacagtgtaaaggagctt 3048058
Query: 349 gaagtgctgctaatgtgcaacaaatcatactgtgctgagattgctcacaacgtctcttcc 408
||||||||||| |||||||||||||| ||| ||||||||| |||||||| ||||||||||
Sbjct: 3048057 gaagtgctgctgatgtgcaacaaatcctaccgtgctgagactgctcacagcgtctcttcc 3047998
Query: 409 aagaaccgcaaagccatcgtcgagagagcggcccaactggccatcagggtcaccaatccc 468
||||||| |||||||| | ||||||||||||| |||||| |||||| ||||||||||
Sbjct: 3047997 aagaacc-caaagcca--ctggagagagcggccccgctggccctcaggggcaccaatccc 3047941
Query: 469 aatgccaggctgcgcagcgaagaaaatgaatagaca 504
|| ||||||||| |||||||||||||| ||| ||||
Sbjct: 3047940 aacgccaggctgtgcagcgaagaaaataaattgaca 3047905
Score = 470 bits (237), Expect = e-130
Identities = 382/429 (89%), Gaps = 1/429 (0%)
Strand = Plus / Minus
Query: 42 ctcttcctcggcgctgccttacggaggtggcagccatcgcccgcctggcatcatggctgc 101
||||||||| | ||||||| |||||||||||||||||| ||| |||||||||||||| |
Sbjct: 78390546 ctcttcctcagtgctgcct-acggaggtggcagccatctccctcctggcatcatggcctc 78390488
Query: 102 tctcagaccccttgtgaagcccaagatcgtcaaaaagaggaccaagaagttcatccggca 161
| |||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct: 78390487 tttcagacccctcatgaagccccagatcatcaaaaagaggaccaagaagctcatccggca 78390428
Query: 162 ccagtcagaccgatatgtcaaaattaagcggaactggcggaaacccagaggcattgacaa 221
|||||||||| | || ||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct: 78390427 ccagtcagactaacatatcaaaattaagtggaactggcagaaacccagaggcattgacca 78390368
Query: 222 cagggtgcggagaaggttcaagggccagatcttgatgcccaacattggttatgggagcaa 281
||||||| | || |||| |||||||||| |||| |||||||||| |||||||||||||||
Sbjct: 78390367 cagggtgagtagcaggtgcaagggccagctcttaatgcccaacactggttatgggagcaa 78390308
Query: 282 caagaaaacaaagcacatgctgcccagtggcttccggaagtttctggtacacaatgtaaa 341
| |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 78390307 ccagaaaataaagccagtgctgcccagtggcttccggaagtttctggtacacagtgtaaa 78390248
Query: 342 agagcttgaagtgctgctaatgtgcaacaaatcatactgtgctgagattgctcacaacgt 401
||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||
Sbjct: 78390247 ggagcttgaagtgctgctgatgtgcaacaaatcgtactgtgctgcgattgctcacaatgt 78390188
Query: 402 ctcttccaagaaccgcaaagccatcgtcgagagagcggcccaactggccatcagggtcac 461
||||| |||||| |||||||| | || |||||| |||||| |||||||||||||||||
Sbjct: 78390187 ctctttcaagaatcgcaaagctgttgtgaagagagtggcccagctggccatcagggtcac 78390128
Query: 462 caatcccaa 470
|||||||||
Sbjct: 78390127 caatcccaa 78390119
Score = 67.9 bits (34), Expect = 1e-08
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 633 agttgaaatgaatagtgggctcgtgtgcacattgttaatgtgttaataaaaccatgaaac 692
||||||||||||||| |||||| |||||||||| | ||||||||||| ||||||||||
Sbjct: 78389970 agttgaaatgaatagcgggctcatgtgcacattatatctgtgttaataagaccatgaaac 78389911
Query: 693 tt 694
||
Sbjct: 78389910 tt 78389909
>Sscrofa_Chr05
|| Length = 111506441
Score = 472 bits (238), Expect = e-130
Identities = 362/402 (90%), Gaps = 1/402 (0%)
Strand = Plus / Plus
Query: 42 ctcttcctcggcgctgccttacggaggtggcagccatcgcccgcctggcatcatggctgc 101
||||||||||| ||||||| |||||||||||||||||| ||| |||||||||||| ||||
Sbjct: 29127679 ctcttcctcggtgctgcct-acggaggtggcagccatctcccacctggcatcatgactgc 29127737
Query: 102 tctcagaccccttgtgaagcccaagatcgtcaaaaagaggaccaagaagttcatccggca 161
|||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 29127738 tctcagactcctcatgaagcccaagatggtcaaaaagaggaccaagaagttcatctgaca 29127797
Query: 162 ccagtcagaccgatatgtcaaaattaagcggaactggcggaaacccagaggcattgacaa 221
|||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 29127798 ccagtcagactgatatgtcaaaattaagcggaactggaggaaactcagaggcattgacaa 29127857
Query: 222 cagggtgcggagaaggttcaagggccagatcttgatgcccaacattggttatgggagcaa 281
||||||| |||| ||||||||||||||||| ||||||||| |||||||| |||||||
Sbjct: 29127858 cagggtgaatagaaagttcaagggccagatctcgatgcccaatattggttagaggagcaa 29127917
Query: 282 caagaaaacaaagcacatgctgcccagtggcttccggaagtttctggtacacaatgtaaa 341
|||||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||
Sbjct: 29127918 caagaaaacaaaacacatgctgcccagtggcttctggaagtttttggtacacaaagtaag 29127977
Query: 342 agagcttgaagtgctgctaatgtgcaacaaatcatactgtgctgagattgctcacaacgt 401
||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||| |
Sbjct: 29127978 ggagcttgaagtgctgctgatgtgcaaaaaatcttactgtgctgagagtgctcactgtat 29128037
Query: 402 ctcttccaagaaccgcaaagccatcgtcgagagagcggccca 443
|||||| |||||| |||||||||| || ||||||||||||||
Sbjct: 29128038 ctcttctaagaactgcaaagccattgtggagagagcggccca 29128079
>Sscrofa_Chr07
|| Length = 134764511
Score = 450 bits (227), Expect = e-124
Identities = 363/407 (89%), Gaps = 1/407 (0%)
Strand = Plus / Minus
Query: 98 ctgctctcagaccccttgtgaagcccaagatcgtcaaaaagaggaccaagaagttcatcc 157
|||| ||||||||||| |||||||||||||| ||||||||||| || ||||| ||||||
Sbjct: 123322607 ctgccctcagacccctcgtgaagcccaagattgtcaaaaagagcacgaagaaattcatct 123322548
Query: 158 ggcaccagtcagaccgatatgtcaaaattaagcggaactggcggaaacccagaggcattg 217
||||||||||||||||||||||| |||||| ||||||||||| ||||||| | ||| |||
Sbjct: 123322547 ggcaccagtcagaccgatatgtcgaaattaggcggaactggcagaaaccccgtggcgttg 123322488
Query: 218 acaacagggtgcggagaaggttcaagggccagatcttgatgcccaacattggttatggga 277
||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct: 123322487 acaacagggcgcgtagaaggttcgagggccagatcttgatgcccaacgttggttacaggt 123322428
Query: 278 gcaacaagaaaacaaagcacatgctgcccagtggcttccggaagtttctggtacacaatg 337
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 123322427 gcaacaagaaaacaaagcacatgctgcccagtggcttccggaagtctctggtacacagtg 123322368
Query: 338 taaaagagcttgaagtgctgctaatgtgcaacaaatcatactgtgctgagattgctcaca 397
|||| ||| ||||||||||| ||||||||| |||| ||||||||| |||||||||||
Sbjct: 123322367 taaagaagcctgaagtgctgcccatgtgcaacgaatcttactgtgctcagattgctcacg 123322308
Query: 398 acgtctcttccaagaaccgcaaagccatcgtcgagagagcggcccaactggccatcaggg 457
| |||||||||||| || |||||||||| || ||| ||| |||||| ||||||||| |||
Sbjct: 123322307 atgtctcttccaaggactgcaaagccattgtggagcgagtggcccagctggccatc-ggg 123322249
Query: 458 tcaccaatcccaatgccaggctgcgcagcgaagaaaatgaatagaca 504
||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 123322248 tcaccaatcccaactccaggctatgcagcgaagaaaatgaatagaca 123322202
Score = 327 bits (165), Expect = 7e-87
Identities = 263/294 (89%), Gaps = 5/294 (1%)
Strand = Plus / Plus
Query: 41 gctcttcctcggcgctgccttacggaggtggcagccatcgcccgcctggcatcatggctg 100
||||||||| || ||||||| || ||||||||||||| || ||||||||| ||||||
Sbjct: 81673781 gctcttccttggtgctgcct-acaaaggtggcagccatttcctgcctggcatggtggctg 81673839
Query: 101 ctctcagaccccttgtgaagcccaagatcgtcaaaaagaggaccaagaagttcatccggc 160
||||||||||| | ||||||||||||||| ||| ||||||||||||||||||| | |
Sbjct: 81673840 ctctcagacccttcgtgaagcccaagatcatca----gaggaccaagaagttcatctgac 81673895
Query: 161 accagtcagaccgatatgtcaaaattaagcggaactggcggaaacccagaggcattgaca 220
|||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 81673896 accagtcagacctatgtgtcaaaattaagtggaactggcggaaacccacaggcattgaca 81673955
Query: 221 acagggtgcggagaaggttcaagggccagatcttgatgcccaacattggttatgggagca 280
|||||||| | |||||||| |||||||| |||||||||||||||||||||| ||||||||
Sbjct: 81673956 acagggtgtgtagaaggtttaagggccacatcttgatgcccaacattggttgtgggagca 81674015
Query: 281 acaagaaaacaaagcacatgctgcccagtggcttccggaagtttctggtacaca 334
| |||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 81674016 aaaagaaaacaaagcacatgctgctcagtggcttccagaagtttctggtacaca 81674069
Score = 248 bits (125), Expect = 5e-63
Identities = 225/257 (87%), Gaps = 1/257 (0%)
Strand = Plus / Plus
Query: 240 caagggccagatcttgatgcccaacattggttatgggagcaacaagaaaacaaagcacat 299
|||||||||||| |||||||| || ||| || ||||||||||||||||||||||||| ||
Sbjct: 102261705 caagggccagattttgatgcctaatatttgtaatgggagcaacaagaaaacaaagcatat 102261764
Query: 300 gctgcccagtggcttccggaagtttctggtacacaatgtaaaagagcttgaagtgctgct 359
||||||||||||||||| ||||||||||||| |||||||||| |||||||| ||||||||
Sbjct: 102261765 gctgcccagtggcttccagaagtttctggtatacaatgtaaaggagcttgacgtgctgct 102261824
Query: 360 aatgtgcaacaaatcatactgtgctgagattgctcacaacgtctcttccaagaaccgcaa 419
|||||||||||||| |||| ||||||||||||||| || ||||||||||||||| |||
Sbjct: 102261825 gatgtgcaacaaatcttactatgctgagattgctcataaattctcttccaagaaccacaa 102261884
Query: 420 agccatcgtcgagagagcggcccaactggccatcagggtcaccaatcccaatgccaggct 479
|||||| || |||||||| ||||| |||| |||| ||||||||||| |||||| ||
Sbjct: 102261885 agccat-gtggagagagcagcccagttggctatcaacttcaccaatccctgtgccagcct 102261943
Query: 480 gcgcagcgaagaaaatg 496
| |||| |||||||||
Sbjct: 102261944 tcacagcaaagaaaatg 102261960
Score = 198 bits (100), Expect = 4e-48
Identities = 247/293 (84%), Gaps = 6/293 (2%)
Strand = Plus / Minus
Query: 145 aagaagttcatccggcaccagtcagaccgatatgtcaaaattaagcggaactggcggaaa 204
|||||||| ||| |||||||||||||| || ||||||||| |||| || ||||| ||||
Sbjct: 59111898 aagaagttaatctggcaccagtcagactgacatgtcaaaactaagtaga-ctggctgaaa 59111840
Query: 205 cccagaggcattgacaacagggtgcggagaaggttcaagggccagatcttgatgcccaac 264
|||||||||||||| | |||||| |||| |||||||||||||||||| |||||||
Sbjct: 59111839 tccagaggcattgacta--gggtgcatggaagagtcaagggccagatcttgacgcccaac 59111782
Query: 265 attggttatgggagcaacaagaaaacaaagcacatgctgcccagtggcttccggaagttt 324
|| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct: 59111781 atcagttatgggaacaacaagaaaacaatgcacatgctgcccagtggcttccagaaattt 59111722
Query: 325 ctggtacacaatgtaaaagagcttgaagtgctgctaatgtgcaacaaatcatactgtgct 384
||||| |||| | || ||||||||||||||||| ||| |||||||||| || ||| |
Sbjct: 59111721 ctggtccaca---tcaaggagcttgaagtgctgctgatgggcaacaaatcttaatgtaat 59111665
Query: 385 gagattgctcacaacgtctcttccaagaaccgcaaagccatcgtcgagagagc 437
||| || |||||| ||||| |||||||| | ||||||||| || ||||||||
Sbjct: 59111664 gaggttattcacaaagtctcctccaagaatcacaaagccattgtggagagagc 59111612
Score = 155 bits (78), Expect = 6e-35
Identities = 114/126 (90%)
Strand = Plus / Plus
Query: 379 tgtgctgagattgctcacaacgtctcttccaagaaccgcaaagccatcgtcgagagagcg 438
|||||||||||||||||||||||||||||| ||||| |||||||| | || |||||||||
Sbjct: 81674081 tgtgctgagattgctcacaacgtctcttccgagaactgcaaagccgttgtggagagagcg 81674140
Query: 439 gcccaactggccatcagggtcaccaatcccaatgccaggctgcgcagcgaagaaaatgaa 498
||||| ||||||||||||| | ||||||||||||||||||| |||| ||||||||| ||
Sbjct: 81674141 gcccaggtggccatcagggttatcaatcccaatgccaggctgtgcagtgaagaaaataaa 81674200
Query: 499 tagaca 504
||||||
Sbjct: 81674201 tagaca 81674206
Score = 99.6 bits (50), Expect = 3e-18
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 613 cagatgtggtttagaccccaagttgaaatgaatagtgggctcgtgtgcacattgttaatg 672
||||||||| ||||||| | |||||||||||||||||||||||| ||||||||| ||
Sbjct: 81674288 cagatgtggcttagacctcgagttgaaatgaatagtgggctcgtatgcacattgcatctg 81674347
Query: 673 tgttaataaaaccatgaaactt 694
||||||||||||||||||||||
Sbjct: 81674348 tgttaataaaaccatgaaactt 81674369
Score = 77.8 bits (39), Expect = 1e-11
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 193 aactggcggaaacccagaggcattgacaacagggtgcggagaaggttcaagggccagat 251
|||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 102261386 aactggtggaaacccagaggcattgacaacagggcttgtagaaggttcaagggccagat 102261444
Score = 58.0 bits (29), Expect = 1e-05
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 634 gttgaaatgaatagtgggctcgtgtgcacattgttaatgtgttaataaaaccatgaaact 693
|||||||||||||| |||| ||||||||||||| ||| |||||||| ||||||||||
Sbjct: 123322089 gttgaaatgaatagcaggcttgtgtgcacattgtatctgttttaataaagccatgaaact 123322030
Query: 694 t 694
|
Sbjct: 123322029 t 123322029
>gb|GL892872.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1694
Length = 25427
Score = 428 bits (216), Expect = e-117
Identities = 372/426 (87%), Gaps = 16/426 (3%)
Strand = Plus / Plus
Query: 43 tcttcctcggcgctgccttacggaggtggcagccatcgcccgcctggcatcatggctgct 102
||||||| ||||||||||| ||||||||||||||||| || |||||||||||||| ||
Sbjct: 19633 tcttccttggcgctgccttgcggaggtggcagccatcttccacctggcatcatggcccct 19692
Query: 103 ctcagaccccttgtgaagcccaagatcgtcaaaaagaggaccaagaagttcatccggcac 162
||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct: 19693 ctcagaccccttgtgaagcccaagatc-------------ccaaga---tcatctggcac 19736
Query: 163 cagtcagaccgatatgtcaaaattaagcggaactggcggaaacccagaggcattgacaac 222
||||||||| ||||||||||||||||| ||||||||| |||| ||||||||||| ||||
Sbjct: 19737 cagtcagactgatatgtcaaaattaagtggaactggcagaaatccagaggcatttacaat 19796
Query: 223 agggtgcggagaaggttcaagggccagatcttgatgcccaacattggttatgggagcaac 282
|||||| | |||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 19797 agggtgtgtagaaagttcaagggccagatcttgatgcccaatattggttatgggagcaaa 19856
Query: 283 aagaaaacaaagcacatgctgcccagtggcttccggaagtttctggtacacaatgtaaaa 342
|||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 19857 aagaaaacaaagtgcctgctgcccagtggcttccggaagtttctggtacacaacgtaaag 19916
Query: 343 gagcttgaagtgctgctaatgtgcaacaaatcatactgtgctgagattgctcacaacgtc 402
|||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||| |||
Sbjct: 19917 gagcttgaggtgctgctgatgtgcaacaaatcttactgtgttgagattgctcacaatgtc 19976
Query: 403 tcttccaagaaccgcaaagccatcgtcgagagagcggcccaactggccatcagggtcacc 462
|||||||| |||| |||||||| || ||||||| |||||| || ||||||||||||| |
Sbjct: 19977 tcttccaaaaaccacaaagccactgtggagagagtggcccagctagccatcagggtcatc 20036
Query: 463 aatccc 468
||||||
Sbjct: 20037 aatccc 20042
>Sscrofa_Chr02
|| Length = 162569375
Score = 426 bits (215), Expect = e-116
Identities = 357/405 (88%), Gaps = 17/405 (4%)
Strand = Plus / Minus
Query: 100 gctctcagaccccttgtgaagcccaagatcgtcaaaaagaggaccaagaagttcatccgg 159
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 83475520 gctctcagacccctcttgaagcccaagatcatcaaaaagaggaccaagaagttcatccgg 83475461
Query: 160 caccagtcagaccgatatgtcaaaattaagcggaactggcggaaacccagaggcattgac 219
| ||||||||||| |||||||||||||||| ||| ||| ||||||||||||||| ||||
Sbjct: 83475460 ccccagtcagaccaatatgtcaaaattaagtagaaatgggggaaacccagaggcactgac 83475401
Query: 220 aacagggtgcggagaaggttcaagggccagatcttgatgcccaacattggttatgggagc 279
| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 83475400 ata--------------gttcaagggccagatcttgatgcccaatattggttatgggagc 83475355
Query: 280 aacaagaaaacaaagcacatgctgcccagtggcttccggaagtttctggtacacaatgta 339
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 83475354 aacaagaaaacaaa--acatgctgcccagtggctgccggaagtttctggtacacaatgta 83475297
Query: 340 aaagagcttgaagtgctgctaatgtgcaacaaatcatactgtgctgagattgctcacaac 399
|| ||| ||||||||||||| |||||||| ||| | ||||||||||||||||||||||||
Sbjct: 83475296 aaggagtttgaagtgctgctgatgtgcaaaaaaccttactgtgctgagattgctcacaac 83475237
Query: 400 gtctcttccaagaaccgcaaagccatcgtcgagagagcggcccaactggccatcagggtc 459
||||||||||||||||||||||||| || |||||| |||||| |||||||||| ||||
Sbjct: 83475236 ttctcttccaagaaccgcaaagccattgtggagagaatggcccagctggccatca-ggtc 83475178
Query: 460 accaatcccaatgccaggctgcgcagcgaagaaaatgaatagaca 504
|||||||| |||||||| || | |||| |||||||||||||||||
Sbjct: 83475177 accaatccaaatgccagacttcacagcaaagaaaatgaatagaca 83475133
Score = 149 bits (75), Expect = 3e-33
Identities = 214/259 (82%), Gaps = 1/259 (0%)
Strand = Plus / Plus
Query: 166 tcagaccgatatgtcaaaattaagcggaactggcggaaacccagaggcattgacaacagg 225
||||||| || |||| |||||||| ||||||| | |||||||| |||||| |||| |
Sbjct: 129965475 tcagaccaatgtgtcgaaattaagtggaactgacaaaaacccaggggcatttacaataat 129965534
Query: 226 gtgcggagaaggttcaagggccagatcttgatgcccaacattggttatgggagcaacaag 285
||| | || || | | ||| |||||| |||| ||||||||||||||||||||||||| |
Sbjct: 129965535 gtgtgcaggagatataggggacagatcgtgatacccaacattggttatgggagcaacagg 129965594
Query: 286 aaaacaaagcacatgctgcccagtggcttccggaagtttctggtacacaatgtaaaagag 345
||||||||||| |||||||||||| |||| ||| || ||||| || || | || |||
Sbjct: 129965595 aaaacaaagcatgtgctgcccagtgacttctagaa-ttcctggtccataacatcaaggag 129965653
Query: 346 cttgaagtgctgctaatgtgcaacaaatcatactgtgctgagattgctcacaacgtctct 405
||||||| ||| |||||||| |||| || |||||||||||||||||||||||| ||||
Sbjct: 129965654 cttgaagggcttctaatgtggaacagatattactgtgctgagattgctcacaacatctcc 129965713
Query: 406 tccaagaaccgcaaagcca 424
||||||||| |||||||||
Sbjct: 129965714 tccaagaacagcaaagcca 129965732
Score = 75.8 bits (38), Expect = 4e-11
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 613 cagatgtggtttagaccccaagttgaaatgaatagtgggctcgtgtgcacattgttaatg 672
||||||||| || || ||| || |||| ||||||||||||||||||||||||||| ||
Sbjct: 83475022 cagatgtggcttggatcccgagctgaagtgaatagtgggctcgtgtgcacattgtatctg 83474963
Query: 673 tgttaataaaaccatgaaactt 694
||||| |||||||||||||||
Sbjct: 83474962 tgttaccaaaaccatgaaactt 83474941
>gb|GL894593.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3242
Length = 58663
Score = 315 bits (159), Expect = 3e-83
Identities = 277/317 (87%), Gaps = 12/317 (3%)
Strand = Plus / Minus
Query: 41 gctcttcctcggcgctgccttacggaggtggcagccatcgcccgcctggcatcatggctg 100
||||||||| ||| |||||| |||||||||||||||||| ||| |||||||| |||| |
Sbjct: 58114 gctcttccttggcactgcct-acggaggtggcagccatctcccacctggcatgatggtgg 58056
Query: 101 ctctcagaccccttgtgaagcccaagatcgtcaaaaagaggaccaagaagttcatccggc 160
||| |||||||| |||||||||||| | | ||||||||| ||||||||| |||||
Sbjct: 58055 ctccgagacccctcctgaagcccaagactgatacaaagaggactgagaagttcaaccggc 57996
Query: 161 accagtcagaccgatatgtcaaaattaagcggaactggcggaaacccagaggcattgaca 220
|||||||||| | | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 57995 accagtcagagcaacatgtcaaaattaagcagaactggcggaaacccagaggcattgaca 57936
Query: 221 acagggtgcggagaaggttcaagggccagatcttgatgcccaacattggttatgggagca 280
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 57935 acagggtgcgtagaaggttcaagggccagatcttgatgcccaacattggttatgggaaca 57876
Query: 281 acaagaaaacaaagcacatgctgcccagtggcttccggaagtttctggtacacaatgtaa 340
|||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 57875 acaagaaaacaaagcaca-----------ggcttctggaagtttctggtacacaatgtaa 57827
Query: 341 aagagcttgaagtgctg 357
| |||||||||| ||||
Sbjct: 57826 aggagcttgaagggctg 57810
Score = 198 bits (100), Expect = 4e-48
Identities = 216/254 (85%), Gaps = 13/254 (5%)
Strand = Plus / Minus
Query: 253 ttgatgcccaacattggttatgggagcaacaagaaaacaaagcacatgctgcccagtggc 312
||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 57775 ttgatgcccaacattggttatgggaacaacaagaaaacaaagcaca-----------ggc 57727
Query: 313 ttccggaagtttctggtacacaatgtaaaagagcttgaagtgctgctaatgtgcaacaaa 372
||| ||||||||||||||||||||||||| |||||||||| |||| || ||||||||
Sbjct: 57726 ttctggaagtttctggtacacaatgtaaaggagcttgaagggctgtggatatgcaacaag 57667
Query: 373 tcat-actgtgctgagattgctcacaacgtctcttccaagaaccgc-aaagccatcgtcg 430
|| | ||||||||| || |||||||||| ||||||||||||||||| |||||||| | |
Sbjct: 57666 tcttaactgtgctgggactgctcacaacatctcttccaagaaccgcaaaagccattgcag 57607
Query: 431 agagagcggcccaactggccatcagggtcaccaatcccaatgccaggctgcgcagcgaag 490
||||||||||||| |||||||||||||||||| ||||||| |||| |||| | ||||
Sbjct: 57606 agagagcggcccagctggccatcagggtcacccatcccaacaccagtctgcaccatgaag 57547
Query: 491 aaaatgaatagaca 504
||||||||||||||
Sbjct: 57546 aaaatgaatagaca 57533
Score = 77.8 bits (39), Expect = 1e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 636 tgaaatgaatagtgggctcgtgtgcacattgttaatgtgttaataaaaccatgaaactt 694
|||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct: 57393 tgaaatgaatagtgggcttgtgtgcacattgtatctgtgttcataaaaccatgaaactt 57335
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,251,296
Number of extensions: 253
Number of successful extensions: 253
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 52
Length of query: 996
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 975
Effective length of database: 2,808,413,156
Effective search space: 2738202827100
Effective search space used: 2738202827100
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)