Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000579
(1157 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039531.1| histidyl-tRNA synthetase, cytoplasmic [Bos t... 570 e-172
Alignment gi|NP_001091602.1| probable histidyl-tRNA synthetase, mitochond... 417 e-123
Alignment gi|XP_001787713.1| PREDICTED: Gcn2-like [Bos taurus]. 87 2e-17
Alignment gi|XP_002690831.1| PREDICTED: Gcn2-like [Bos taurus]. 85 1e-16
>ref|NP_001039531.1| histidyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 509
Score = 570 bits (1468), Expect(2) = e-172
Identities = 284/300 (94%), Positives = 290/300 (96%)
Frame = +3
Query: 75 MAGRETLEELVRLQGERVRGLKQQKASTEQIEEEVAKLLKLKAQLGPDEGKHKFVLKTPK 254
MA R LE+LVR+QGERVRGLKQQKAS EQIEEEVAKLLKLKAQLGPDEGK KFVLKTPK
Sbjct: 1 MADRAALEDLVRVQGERVRGLKQQKASAEQIEEEVAKLLKLKAQLGPDEGKPKFVLKTPK 60
Query: 255 GTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ 434
GTRDYSPRQMAVREKVFDVII CFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ
Sbjct: 61 GTRDYSPRQMAVREKVFDVIISCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ 120
Query: 435 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 614
GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG
Sbjct: 121 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 180
Query: 615 QFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTICSSVDK 794
QFDPM+PDAECLKIMCEILSSLQIGDFLVKVNDRRILDG+FAICGVPD+KFRTICSSVDK
Sbjct: 181 QFDPMLPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVPDSKFRTICSSVDK 240
Query: 795 LDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP*LSQNKQGLGGAG 974
LDK+SWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP LSQNKQ L G G
Sbjct: 241 LDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLG 300
Score = 55.1 bits (131), Expect(2) = e-172
Identities = 27/40 (67%), Positives = 31/40 (77%)
Frame = +2
Query: 1037 LDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L AR LDYYTGVI E LLQPP +AG++PLG G+VA GG
Sbjct: 322 LSLARGLDYYTGVIYEAVLLQPPARAGEEPLGVGSVAAGG 361
>ref|NP_001091602.1| probable histidyl-tRNA synthetase, mitochondrial precursor [Bos
taurus].
Length = 506
Score = 417 bits (1071), Expect(2) = e-123
Identities = 198/267 (74%), Positives = 232/267 (86%)
Frame = +3
Query: 174 EVAKLLKLKAQLGPDEGKHKFVLKTPKGTRDYSPRQMAVREKVFDVIIGCFKRHGAEVID 353
+VA+ L +QL P + K F +KTPKGTRD SP+QM VREK+ DV++ CFKRHGA+ +D
Sbjct: 36 QVAEAL-FASQLKPHQEKSNFTIKTPKGTRDLSPQQMVVREKILDVVVSCFKRHGAKGLD 94
Query: 354 TPVFELKETLTGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIA 533
TP FELKE LT KYGEDS LIYDLKDQGGELLSLRYDLTVPFARYLAMNK+ +KRYH+
Sbjct: 95 TPAFELKEILTEKYGEDSGLIYDLKDQGGELLSLRYDLTVPFARYLAMNKVKKMKRYHVG 154
Query: 534 KVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIMCEILSSLQIGDFLVKVND 713
KV+RR++P + +GRYREFYQCDFDIAGQFDPMIPDAECLKIMCEILS L +GDFL+KV+D
Sbjct: 155 KVWRRESPTIVQGRYREFYQCDFDIAGQFDPMIPDAECLKIMCEILSGLHLGDFLIKVSD 214
Query: 714 RRILDGLFAICGVPDTKFRTICSSVDKLDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQ 893
RRILDG+FA+CGVP++KF ICSSVDKLDK+SW++V++EMV +KGLAPEVADRIGDYVQ
Sbjct: 215 RRILDGIFAVCGVPESKFHAICSSVDKLDKISWKDVRHEMVVKKGLAPEVADRIGDYVQC 274
Query: 894 HGGVSLVEQLLQDP*LSQNKQGLGGAG 974
HGG+SLVEQ+ QDP LSQNKQ L G G
Sbjct: 275 HGGISLVEQMFQDPRLSQNKQALEGLG 301
Score = 45.8 bits (107), Expect(2) = e-123
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = +2
Query: 1037 LDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L AR LDYYTGVI E LLQ P A ++PL G+VA GG
Sbjct: 323 LSLARGLDYYTGVIYEAVLLQTPVHAEEEPLNMGSVAAGG 362
>ref|XP_001787713.1| PREDICTED: Gcn2-like [Bos taurus].
Length = 1570
Score = 87.4 bits (215), Expect = 2e-17
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 4/191 (2%)
Frame = +3
Query: 216 DEGKHKFVLKTPKGTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKY 395
D+G+H T +G+ +S R +++ V + II FKRHGA + TP+ + ++
Sbjct: 967 DDGEH-----TKQGS--FSIRTAKIQQHVCETIIRIFKRHGAVQLCTPLLLPRNRQIYEH 1019
Query: 396 GEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGR 575
E + + D G L+ L +DL VPFARY+A N + N+KRY I +V+R + R
Sbjct: 1020 NEAALFM----DHSGMLVMLPFDLRVPFARYVARNNILNLKRYCIERVFRPRK--LDRFH 1073
Query: 576 YREFYQCDFDI-AGQFDPMIPDAECLKIMCEILS---SLQIGDFLVKVNDRRILDGLFAI 743
+E +C FDI + +P AE + + EI+ +LQ ++ + +N +L +
Sbjct: 1074 PKELLECAFDIVTSTTNSSLPTAEIIYTIYEIIQEFPALQERNYSIYLNHTMLLKAILLH 1133
Query: 744 CGVPDTKFRTI 776
CG+P+ K +
Sbjct: 1134 CGIPEDKLSQV 1144
>ref|XP_002690831.1| PREDICTED: Gcn2-like [Bos taurus].
Length = 1649
Score = 85.1 bits (209), Expect = 1e-16
Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 4/174 (2%)
Frame = +3
Query: 267 YSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQGGEL 446
+S R +++ V + II FKRHGA + TP+ + ++ E + + D G L
Sbjct: 1056 FSIRTAKIQQHVCETIIRIFKRHGAVQLCTPLLLPRNRQIYEHNEAALFM----DHSGML 1111
Query: 447 LSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDI-AGQFD 623
+ L +DL VPFARY+A N + N+KRY I +V+R + R +E +C FDI +
Sbjct: 1112 VMLPFDLRVPFARYVARNNILNLKRYCIERVFRPRK--LDRFHPKELLECAFDIVTSTTN 1169
Query: 624 PMIPDAECLKIMCEILS---SLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTI 776
+P AE + + EI+ +LQ ++ + +N +L + CG+P+ K +
Sbjct: 1170 SSLPTAEIIYTIYEIIQEFPALQERNYSIYLNHTMLLKAILLHCGIPEDKLSQV 1223
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,962,932
Number of extensions: 1270101
Number of successful extensions: 4900
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4883
Number of HSP's successfully gapped: 6
Length of query: 385
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,240,222
Effective search space: 4001502382
Effective search space used: 4001502382
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000579
(1157 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535213.2| PREDICTED: similar to Histidyl-tRNA synthetase ... 567 e-171
Alignment gi|XP_854376.1| PREDICTED: similar to Histidyl-tRNA synthetase ... 456 e-128
Alignment gi|XP_535214.2| PREDICTED: similar to Histidyl-tRNA synthetase ... 405 e-118
Alignment gi|XP_857466.1| PREDICTED: similar to Histidyl-tRNA synthetase ... 360 e-108
Alignment gi|XP_854016.1| PREDICTED: similar to Histidyl-tRNA synthetase ... 207 8e-63
Alignment gi|XP_535431.2| PREDICTED: similar to Eukaryotic translation in... 93 5e-19
>ref|XP_535213.2| PREDICTED: similar to Histidyl-tRNA synthetase (Histidine--tRNA
ligase) (HisRS) isoform 1 [Canis familiaris].
Length = 509
Score = 567 bits (1462), Expect(2) = e-171
Identities = 283/300 (94%), Positives = 288/300 (96%)
Frame = +3
Query: 75 MAGRETLEELVRLQGERVRGLKQQKASTEQIEEEVAKLLKLKAQLGPDEGKHKFVLKTPK 254
MA R LEELVRLQGERVRGLKQQKAS EQIEEEVAKLLKLKAQLGPDEGK KFVLKTPK
Sbjct: 1 MAERAALEELVRLQGERVRGLKQQKASAEQIEEEVAKLLKLKAQLGPDEGKQKFVLKTPK 60
Query: 255 GTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ 434
GTRDYSPRQMAVREKVFDVII CFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ
Sbjct: 61 GTRDYSPRQMAVREKVFDVIISCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ 120
Query: 435 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 614
GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG
Sbjct: 121 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 180
Query: 615 QFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTICSSVDK 794
QFDPMIPDAECL+IMCEIL SLQIGDFLVKVNDRRILDG+FAICGVPD+KFRTICSSVDK
Sbjct: 181 QFDPMIPDAECLEIMCEILRSLQIGDFLVKVNDRRILDGMFAICGVPDSKFRTICSSVDK 240
Query: 795 LDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP*LSQNKQGLGGAG 974
LDK+SWEEVKNEMVGEKGLAPEVAD IGDYVQQHGG+SLVEQLLQDP LSQNKQ L G G
Sbjct: 241 LDKVSWEEVKNEMVGEKGLAPEVADHIGDYVQQHGGISLVEQLLQDPELSQNKQALEGLG 300
Score = 53.1 bits (126), Expect(2) = e-171
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +2
Query: 1037 LDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L AR LDYYTGVI E LLQ P QAG++PLG G+VA GG
Sbjct: 322 LSLARGLDYYTGVIYEAVLLQTPVQAGEEPLGVGSVAAGG 361
>ref|XP_854376.1| PREDICTED: similar to Histidyl-tRNA synthetase (Histidine--tRNA
ligase) (HisRS) [Canis familiaris].
Length = 618
Score = 456 bits (1173), Expect = e-128
Identities = 235/289 (81%), Positives = 248/289 (85%)
Frame = +3
Query: 108 RLQGERVRGLKQQKASTEQIEEEVAKLLKLKAQLGPDEGKHKFVLKTPKGTRDYSPRQMA 287
RLQGE V+GLKQQKASTEQIEEEVAKLLKLKAQLGPDE K KFVLKTPKGTRDYSP+QMA
Sbjct: 32 RLQGECVQGLKQQKASTEQIEEEVAKLLKLKAQLGPDERKQKFVLKTPKGTRDYSPQQMA 91
Query: 288 VREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQGGELLSLRYDL 467
VREKVFDVII CFKRHGAE+ DTPVFELKETLTGKYGEDSKLIYDLKDQGGELLSL YDL
Sbjct: 92 VREKVFDVIISCFKRHGAEITDTPVFELKETLTGKYGEDSKLIYDLKDQGGELLSLCYDL 151
Query: 468 TVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAEC 647
TVPFARYLAMNKLTNIK YHIAKVY DNPAMTRG+YREFYQC FDIAGQFDPMI DAEC
Sbjct: 152 TVPFARYLAMNKLTNIKPYHIAKVYWCDNPAMTRGQYREFYQCYFDIAGQFDPMITDAEC 211
Query: 648 LKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTICSSVDKLDKMSWEEVKN 827
L+IM EIL SLQIGDFLVKVNDR ILDG + ++ ++SWEEVKN
Sbjct: 212 LEIMSEILRSLQIGDFLVKVNDRHILDG------------------IGQVGQVSWEEVKN 253
Query: 828 EMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP*LSQNKQGLGGAG 974
EMVGEKGLA +V D IGDY+QQHGG+SLVEQLLQDP LSQNKQ L G G
Sbjct: 254 EMVGEKGLATKVPDHIGDYIQQHGGISLVEQLLQDPELSQNKQALEGLG 302
Score = 45.1 bits (105), Expect(2) = 8e-06
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +1
Query: 934 PNCPKTNRALEGLGDLKLLFEYLTLFCVPDR 1026
P + +ALEGLGDLKLLFEYLTLF + D+
Sbjct: 289 PELSQNKQALEGLGDLKLLFEYLTLFSIADK 319
Score = 23.5 bits (49), Expect(2) = 8e-06
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 1112 AGKKPLGGGNVAPGG 1156
AG++PLG GNVA G
Sbjct: 327 AGEEPLGVGNVAAEG 341
>ref|XP_535214.2| PREDICTED: similar to Histidyl-tRNA synthetase homolog
(Histidine--tRNA ligase homolog) (HisRS) [Canis
familiaris].
Length = 505
Score = 405 bits (1041), Expect(2) = e-118
Identities = 191/260 (73%), Positives = 224/260 (86%)
Frame = +3
Query: 195 LKAQLGPDEGKHKFVLKTPKGTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELK 374
L +QL P + K FV+KTPKGTRD SP+QM VREK+ D++I CFKRHGA+ +DTP FELK
Sbjct: 42 LISQLKPHQEKSNFVIKTPKGTRDLSPQQMVVREKILDMVIDCFKRHGAKRLDTPAFELK 101
Query: 375 ETLTGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDN 554
E LT KYGEDS LIYDLKDQGGELLSLRYDLTVPFARYLAMNK+ +KRY + KV+RR++
Sbjct: 102 EMLTEKYGEDSGLIYDLKDQGGELLSLRYDLTVPFARYLAMNKVKRMKRYQVGKVWRRES 161
Query: 555 PAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGL 734
P + +GRYREF QCDFDIAGQFDPMIPDAECLKIMCE+LS LQ+GDFL+KVNDRRILDG+
Sbjct: 162 PTIVQGRYREFCQCDFDIAGQFDPMIPDAECLKIMCEVLSGLQLGDFLIKVNDRRILDGI 221
Query: 735 FAICGVPDTKFRTICSSVDKLDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLV 914
A+C VP +KF ICSS+DKLDK+ W++V++EMV +KGLAPEVADRIGDYVQ+HGGVSLV
Sbjct: 222 LAVCAVPQSKFHAICSSIDKLDKIPWKDVRHEMVAKKGLAPEVADRIGDYVQRHGGVSLV 281
Query: 915 EQLLQDP*LSQNKQGLGGAG 974
E++ QD LSQNKQ L G G
Sbjct: 282 EEMFQDSRLSQNKQALEGLG 301
Score = 40.4 bits (93), Expect(2) = e-118
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = +2
Query: 1037 LDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L AR LDYYTGVI E LLQ P QA ++ L G+VA GG
Sbjct: 323 LSLARGLDYYTGVIYEAVLLQTPAQA-EECLNVGSVAAGG 361
>ref|XP_857466.1| PREDICTED: similar to Histidyl-tRNA synthetase (Histidine--tRNA
ligase) (HisRS) isoform 3 [Canis familiaris].
Length = 404
Score = 360 bits (923), Expect(2) = e-108
Identities = 185/231 (80%), Positives = 189/231 (81%)
Frame = +3
Query: 282 MAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQGGELLSLRY 461
MAVREKVFDVII CFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQGGELLSLRY
Sbjct: 1 MAVREKVFDVIISCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQGGELLSLRY 60
Query: 462 DLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDA 641
DLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQC
Sbjct: 61 DLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQC--------------- 105
Query: 642 ECLKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTICSSVDKLDKMSWEEV 821
VNDRRILDG+FAICGVPD+KFRTICSSVDKLDK+SWEEV
Sbjct: 106 ---------------------VNDRRILDGMFAICGVPDSKFRTICSSVDKLDKVSWEEV 144
Query: 822 KNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP*LSQNKQGLGGAG 974
KNEMVGEKGLAPEVAD IGDYVQQHGG+SLVEQLLQDP LSQNKQ L G G
Sbjct: 145 KNEMVGEKGLAPEVADHIGDYVQQHGGISLVEQLLQDPELSQNKQALEGLG 195
Score = 53.1 bits (126), Expect(2) = e-108
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +2
Query: 1037 LDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L AR LDYYTGVI E LLQ P QAG++PLG G+VA GG
Sbjct: 217 LSLARGLDYYTGVIYEAVLLQTPVQAGEEPLGVGSVAAGG 256
>ref|XP_854016.1| PREDICTED: similar to Histidyl-tRNA synthetase (Histidine--tRNA
ligase) (HisRS) [Canis familiaris].
Length = 325
Score = 207 bits (526), Expect(2) = 8e-63
Identities = 101/116 (87%), Positives = 107/116 (92%)
Frame = +3
Query: 627 MIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTICSSVDKLDKM 806
MIPDAECL+IMCEIL SLQIGDFLVKVNDRRILDG+FAICG PD+KFR ICSS +KLDK+
Sbjct: 1 MIPDAECLEIMCEILRSLQIGDFLVKVNDRRILDGMFAICGAPDSKFRAICSSGNKLDKV 60
Query: 807 SWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP*LSQNKQGLGGAG 974
SWEEVKNEMVGEKGLAPEVAD IGDYVQQHGG+SLVEQLLQDP LSQNKQ L G G
Sbjct: 61 SWEEVKNEMVGEKGLAPEVADHIGDYVQQHGGISLVEQLLQDPELSQNKQALEGLG 116
Score = 53.1 bits (126), Expect(2) = 8e-63
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +2
Query: 1037 LDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L AR LDYYTGVI E LLQ P QAG++PLG G+VA GG
Sbjct: 138 LSLARGLDYYTGVIYEAVLLQTPVQAGEEPLGVGSVAAGG 177
>ref|XP_535431.2| PREDICTED: similar to Eukaryotic translation initiation factor
2-alpha kinase 4 (GCN2-like protein) [Canis familiaris].
Length = 1633
Score = 92.8 bits (229), Expect = 5e-19
Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 4/180 (2%)
Frame = +3
Query: 249 PKGTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLK 428
PKG +S R +++ V D I+ FK+HGA + TP+ + ++ E + +
Sbjct: 1055 PKG---FSIRTSKIQQHVCDTIVRIFKKHGAVQLCTPLLLPQNRQIYEHNEAALFM---- 1107
Query: 429 DQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDI 608
D G L+ L +DL VPFARY+A N + N+KRY I +V+R + R +E +C FDI
Sbjct: 1108 DHSGMLVMLPFDLRVPFARYVARNNILNLKRYCIERVFRPRK--LDRFHPKELLECAFDI 1165
Query: 609 -AGQFDPMIPDAECLKIMCEILS---SLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTI 776
+ +P AE + +CEI+ +LQ ++ + +N +L +F CG+P+ K +
Sbjct: 1166 VTSTTNSSLPTAEVIYTICEIIQEFPALQERNYSIYLNHTMLLKAIFLHCGIPEDKLSQV 1225
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,938,036
Number of extensions: 1315368
Number of successful extensions: 5192
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5188
Number of HSP's successfully gapped: 13
Length of query: 385
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 280
Effective length of database: 15,374,224
Effective search space: 4304782720
Effective search space used: 4304782720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000579
(1157 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002100.2| histidyl-tRNA synthetase, cytoplasmic [Homo sap... 559 e-168
Alignment gi|NP_036340.1| probable histidyl-tRNA synthetase, mitochondria... 415 e-124
Alignment gi|NP_001013725.2| eukaryotic translation initiation factor 2-a... 85 1e-16
>ref|NP_002100.2| histidyl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 509
Score = 559 bits (1440), Expect(2) = e-168
Identities = 281/300 (93%), Positives = 285/300 (95%)
Frame = +3
Query: 75 MAGRETLEELVRLQGERVRGLKQQKASTEQIEEEVAKLLKLKAQLGPDEGKHKFVLKTPK 254
MA R LEELV+LQGERVRGLKQQKAS E IEEEVAKLLKLKAQLGPDE K KFVLKTPK
Sbjct: 1 MAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPK 60
Query: 255 GTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ 434
GTRDYSPRQMAVREKVFDVII CFKRHGAEVIDTPVFELKETL GKYGEDSKLIYDLKDQ
Sbjct: 61 GTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQ 120
Query: 435 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 614
GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG
Sbjct: 121 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 180
Query: 615 QFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTICSSVDK 794
FDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDG+FAICGV D+KFRTICSSVDK
Sbjct: 181 NFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDK 240
Query: 795 LDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP*LSQNKQGLGGAG 974
LDK+SWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP LSQNKQ L G G
Sbjct: 241 LDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLG 300
Score = 53.5 bits (127), Expect(2) = e-168
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +2
Query: 1037 LDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L AR LDYYTGVI E LLQ P QAG++PLG G+VA GG
Sbjct: 322 LSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGG 361
>ref|NP_036340.1| probable histidyl-tRNA synthetase, mitochondrial precursor [Homo
sapiens].
Length = 506
Score = 415 bits (1067), Expect(2) = e-124
Identities = 197/269 (73%), Positives = 235/269 (87%)
Frame = +3
Query: 168 EEEVAKLLKLKAQLGPDEGKHKFVLKTPKGTRDYSPRQMAVREKVFDVIIGCFKRHGAEV 347
+ +VA+ + L +QL + K F++KTPKGTRD SP+ M VREK+ D++I CFKRHGA+
Sbjct: 34 QSQVAEAV-LTSQLKAHQEKPNFIIKTPKGTRDLSPQHMVVREKILDLVISCFKRHGAKG 92
Query: 348 IDTPVFELKETLTGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYH 527
+DTP FELKETLT KYGEDS L+YDLKDQGGELLSLRYDLTVPFARYLAMNK+ +KRYH
Sbjct: 93 MDTPAFELKETLTEKYGEDSGLMYDLKDQGGELLSLRYDLTVPFARYLAMNKVKKMKRYH 152
Query: 528 IAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIMCEILSSLQIGDFLVKV 707
+ KV+RR++P + +GRYREF QCDFDIAGQFDPMIPDAECLKIMCEILS LQ+GDFL+KV
Sbjct: 153 VGKVWRRESPTIVQGRYREFCQCDFDIAGQFDPMIPDAECLKIMCEILSGLQLGDFLIKV 212
Query: 708 NDRRILDGLFAICGVPDTKFRTICSSVDKLDKMSWEEVKNEMVGEKGLAPEVADRIGDYV 887
NDRRI+DG+FA+CGVP++KFR ICSS+DKLDKM+W++V++EMV +KGLAPEVADRIGDYV
Sbjct: 213 NDRRIVDGMFAVCGVPESKFRAICSSIDKLDKMAWKDVRHEMVVKKGLAPEVADRIGDYV 272
Query: 888 QQHGGVSLVEQLLQDP*LSQNKQGLGGAG 974
Q HGGVSLVEQ+ QDP LSQNKQ L G G
Sbjct: 273 QCHGGVSLVEQMFQDPRLSQNKQALEGLG 301
Score = 50.8 bits (120), Expect(2) = e-124
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = +2
Query: 1037 LDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L AR LDYYTGVI E LLQ P QAG++PL G+VA GG
Sbjct: 323 LSLARGLDYYTGVIYEAVLLQTPTQAGEEPLNVGSVAAGG 362
>ref|NP_001013725.2| eukaryotic translation initiation factor 2-alpha kinase 4 [Homo
sapiens].
Length = 1649
Score = 84.7 bits (208), Expect = 1e-16
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 4/175 (2%)
Frame = +3
Query: 264 DYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQGGE 443
++S R +++ V + II FKRHGA + TP+ + ++ E + + D G
Sbjct: 1055 NFSIRTAKMQQHVCETIIRIFKRHGAVQLCTPLLLPRNRQIYEHNEAALFM----DHSGM 1110
Query: 444 LLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDI-AGQF 620
L+ L +DL +PFARY+A N + N+KRY I +V+R + R +E +C FDI
Sbjct: 1111 LVMLPFDLRIPFARYVARNNILNLKRYCIERVFRPRK--LDRFHPKELLECAFDIVTSTT 1168
Query: 621 DPMIPDAECLKIMCEILS---SLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTI 776
+ +P AE + + EI+ +LQ ++ + +N +L + CG+P+ K +
Sbjct: 1169 NSFLPTAEIIYTIYEIIQEFPALQERNYSIYLNHTMLLKAILLHCGIPEDKLSQV 1223
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,065,871
Number of extensions: 1286949
Number of successful extensions: 5136
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5125
Number of HSP's successfully gapped: 5
Length of query: 385
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,868,908
Effective search space: 4178163148
Effective search space used: 4178163148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000579
(1157 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032240.3| histidyl-tRNA synthetase, cytoplasmic [Mus musc... 559 e-168
Alignment gi|NP_542367.1| probable histidyl-tRNA synthetase, mitochondria... 395 e-118
Alignment gi|NP_001171277.1| eukaryotic translation initiation factor 2-a... 83 5e-16
Alignment gi|NP_038747.2| eukaryotic translation initiation factor 2-alph... 83 5e-16
Alignment gi|NP_001003913.1| methionyl-tRNA synthetase, cytoplasmic isofo... 50 4e-06
Alignment gi|NP_001165053.1| methionyl-tRNA synthetase, cytoplasmic isofo... 50 4e-06
>ref|NP_032240.3| histidyl-tRNA synthetase, cytoplasmic [Mus musculus].
Length = 509
Score = 559 bits (1441), Expect(2) = e-168
Identities = 279/300 (93%), Positives = 286/300 (95%)
Frame = +3
Query: 75 MAGRETLEELVRLQGERVRGLKQQKASTEQIEEEVAKLLKLKAQLGPDEGKHKFVLKTPK 254
MA R LEELVRLQG VRGLK+QKAS EQIEEEV KLLKLKAQLG DEGK KFVLKTPK
Sbjct: 1 MADRAALEELVRLQGAHVRGLKEQKASAEQIEEEVTKLLKLKAQLGQDEGKQKFVLKTPK 60
Query: 255 GTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ 434
GTRDYSPRQMAVREKVFDVII CFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ
Sbjct: 61 GTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ 120
Query: 435 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 614
GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG
Sbjct: 121 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 180
Query: 615 QFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTICSSVDK 794
QFDPMIPDAECLKIMCEILSSLQIG+FLVKVNDRRILDG+FA+CGVPD+KFRTICSSVDK
Sbjct: 181 QFDPMIPDAECLKIMCEILSSLQIGNFLVKVNDRRILDGMFAVCGVPDSKFRTICSSVDK 240
Query: 795 LDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP*LSQNKQGLGGAG 974
LDK+SWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP LSQNKQ + G G
Sbjct: 241 LDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQAVEGLG 300
Score = 52.4 bits (124), Expect(2) = e-168
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = +2
Query: 1037 LDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L AR LDYYTGVI E LLQ P QAG++PLG G++A GG
Sbjct: 322 LSLARGLDYYTGVIYEAVLLQMPTQAGEEPLGVGSIAAGG 361
>ref|NP_542367.1| probable histidyl-tRNA synthetase, mitochondrial precursor [Mus
musculus].
Length = 505
Score = 395 bits (1016), Expect(2) = e-118
Identities = 189/273 (69%), Positives = 226/273 (82%)
Frame = +3
Query: 156 TEQIEEEVAKLLKLKAQLGPDEGKHKFVLKTPKGTRDYSPRQMAVREKVFDVIIGCFKRH 335
T +VAK + QL + K FV+K PKGTRD SP+QM VREK+ D II CFKRH
Sbjct: 28 TRGCHSQVAKAVLTSEQLKSHQEKPNFVIKVPKGTRDLSPQQMVVREKILDKIISCFKRH 87
Query: 336 GAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNI 515
GA+ +DTP FELKE LT KY ++ L+YDLKDQGGELLSLRYDLTVPFARYLAMNKL +
Sbjct: 88 GAKGLDTPAFELKEMLTEKYEDNFGLMYDLKDQGGELLSLRYDLTVPFARYLAMNKLKKM 147
Query: 516 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIMCEILSSLQIGDF 695
KRY + KV+RR++PA+ +GRYREF QCDFDIAG+FDPMIPDAECL+IMCEILS LQ+GDF
Sbjct: 148 KRYQVGKVWRRESPAIAQGRYREFCQCDFDIAGEFDPMIPDAECLRIMCEILSGLQLGDF 207
Query: 696 LVKVNDRRILDGLFAICGVPDTKFRTICSSVDKLDKMSWEEVKNEMVGEKGLAPEVADRI 875
L+KVNDRR++DG+FA+CGVP++K RTICSS+DKLDKMSWE V++EMV +KGLAPEVADRI
Sbjct: 208 LIKVNDRRVVDGIFAVCGVPESKLRTICSSMDKLDKMSWEGVRHEMVAKKGLAPEVADRI 267
Query: 876 GDYVQQHGGVSLVEQLLQDP*LSQNKQGLGGAG 974
GD+VQ HGG+SLVE L +DP LSQ++ L G G
Sbjct: 268 GDFVQYHGGISLVEDLFKDPRLSQSQLALQGLG 300
Score = 50.1 bits (118), Expect(2) = e-118
Identities = 26/42 (61%), Positives = 29/42 (69%)
Frame = +2
Query: 1031 LQLDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L L AR LDYYTGVI E LL+ P QAGK+ L G+VA GG
Sbjct: 320 LDLSLARGLDYYTGVIYEAVLLESPAQAGKETLSVGSVAAGG 361
>ref|NP_001171277.1| eukaryotic translation initiation factor 2-alpha kinase 4 isoform 2
[Mus musculus].
Length = 1536
Score = 82.8 bits (203), Expect = 5e-16
Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = +3
Query: 276 RQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQGGELLSL 455
R +++ V + I+ FKRHGA + TP+ + ++ E + + D G L+ L
Sbjct: 946 RTAKIQQLVCETIVRVFKRHGAVQLCTPLLLPRNRQIYEHNEAALFM----DHSGMLVML 1001
Query: 456 RYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDI-AGQFDPMI 632
+DL VPFARY+A N + N+KRY I +V+R + R +E +C FDI + +
Sbjct: 1002 PFDLRVPFARYVARNNILNLKRYCIERVFRPRK--LDRFHPKELLECAFDIVTSTTNSSL 1059
Query: 633 PDAECLKIMCEILS---SLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTI 776
P AE + + EI+ +LQ ++ + +N +L + CG+P+ K +
Sbjct: 1060 PTAETIYTIYEIIQEFPALQERNYSIYLNHTMLLKAILLHCGIPEDKLSQV 1110
>ref|NP_038747.2| eukaryotic translation initiation factor 2-alpha kinase 4 isoform 1
[Mus musculus].
Length = 1648
Score = 82.8 bits (203), Expect = 5e-16
Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = +3
Query: 276 RQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQGGELLSL 455
R +++ V + I+ FKRHGA + TP+ + ++ E + + D G L+ L
Sbjct: 1058 RTAKIQQLVCETIVRVFKRHGAVQLCTPLLLPRNRQIYEHNEAALFM----DHSGMLVML 1113
Query: 456 RYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDI-AGQFDPMI 632
+DL VPFARY+A N + N+KRY I +V+R + R +E +C FDI + +
Sbjct: 1114 PFDLRVPFARYVARNNILNLKRYCIERVFRPRK--LDRFHPKELLECAFDIVTSTTNSSL 1171
Query: 633 PDAECLKIMCEILS---SLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTI 776
P AE + + EI+ +LQ ++ + +N +L + CG+P+ K +
Sbjct: 1172 PTAETIYTIYEIIQEFPALQERNYSIYLNHTMLLKAILLHCGIPEDKLSQV 1222
>ref|NP_001003913.1| methionyl-tRNA synthetase, cytoplasmic isoform 2 [Mus musculus].
Length = 902
Score = 49.7 bits (117), Expect = 4e-06
Identities = 32/66 (48%), Positives = 38/66 (57%)
Frame = +3
Query: 66 AASMAGRETLEELVRLQGERVRGLKQQKASTEQIEEEVAKLLKLKAQLGPDEGKHKFVLK 245
AA +TL + V QG VR LK QKA Q+ EVAKLL LK QL EGK ++
Sbjct: 838 AAGSQHIQTLTDEVTKQGNVVRELKAQKADKNQVAAEVAKLLDLKKQLALAEGK---PIE 894
Query: 246 TPKGTR 263
TPKG +
Sbjct: 895 TPKGKK 900
>ref|NP_001165053.1| methionyl-tRNA synthetase, cytoplasmic isoform 1 [Mus musculus].
Length = 910
Score = 49.7 bits (117), Expect = 4e-06
Identities = 32/66 (48%), Positives = 38/66 (57%)
Frame = +3
Query: 66 AASMAGRETLEELVRLQGERVRGLKQQKASTEQIEEEVAKLLKLKAQLGPDEGKHKFVLK 245
AA +TL + V QG VR LK QKA Q+ EVAKLL LK QL EGK ++
Sbjct: 846 AAGSQHIQTLTDEVTKQGNVVRELKAQKADKNQVAAEVAKLLDLKKQLALAEGK---PIE 902
Query: 246 TPKGTR 263
TPKG +
Sbjct: 903 TPKGKK 908
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,904,027
Number of extensions: 1070179
Number of successful extensions: 4123
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4117
Number of HSP's successfully gapped: 8
Length of query: 385
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 282
Effective length of database: 12,523,851
Effective search space: 3531725982
Effective search space used: 3531725982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000579
(1157 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354351.1| PREDICTED: histidyl-tRNA synthetase, cytopla... 592 e-179
Alignment gi|XP_003124081.1| PREDICTED: histidyl-tRNA synthetase, cytopla... 592 e-179
Alignment gi|XP_003354357.1| PREDICTED: probable histidyl-tRNA synthetase... 416 e-125
Alignment gi|XP_003124096.1| PREDICTED: probable histidyl-tRNA synthetase... 414 e-124
>ref|XP_003354351.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic-like [Sus scrofa].
Length = 509
Score = 592 bits (1525), Expect(2) = e-179
Identities = 296/300 (98%), Positives = 296/300 (98%)
Frame = +3
Query: 75 MAGRETLEELVRLQGERVRGLKQQKASTEQIEEEVAKLLKLKAQLGPDEGKHKFVLKTPK 254
MAGRETLEELVRLQGERVRGLKQQKASTEQIEEEVAKLLKLKAQLGPDEGKHKFVLKTPK
Sbjct: 1 MAGRETLEELVRLQGERVRGLKQQKASTEQIEEEVAKLLKLKAQLGPDEGKHKFVLKTPK 60
Query: 255 GTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ 434
GTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ
Sbjct: 61 GTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ 120
Query: 435 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 614
GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG
Sbjct: 121 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 180
Query: 615 QFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTICSSVDK 794
QFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTICSSVDK
Sbjct: 181 QFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTICSSVDK 240
Query: 795 LDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP*LSQNKQGLGGAG 974
LDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP LSQNKQ L G G
Sbjct: 241 LDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLG 300
Score = 56.6 bits (135), Expect(2) = e-179
Identities = 28/40 (70%), Positives = 31/40 (77%)
Frame = +2
Query: 1037 LDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L AR LDYYTGVI E LLQPP QAG++PLG G+VA GG
Sbjct: 322 LSLARGLDYYTGVIYEAVLLQPPAQAGEEPLGVGSVAAGG 361
>ref|XP_003124081.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic-like [Sus scrofa].
Length = 509
Score = 592 bits (1525), Expect(2) = e-179
Identities = 296/300 (98%), Positives = 296/300 (98%)
Frame = +3
Query: 75 MAGRETLEELVRLQGERVRGLKQQKASTEQIEEEVAKLLKLKAQLGPDEGKHKFVLKTPK 254
MAGRETLEELVRLQGERVRGLKQQKASTEQIEEEVAKLLKLKAQLGPDEGKHKFVLKTPK
Sbjct: 1 MAGRETLEELVRLQGERVRGLKQQKASTEQIEEEVAKLLKLKAQLGPDEGKHKFVLKTPK 60
Query: 255 GTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ 434
GTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ
Sbjct: 61 GTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQ 120
Query: 435 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 614
GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG
Sbjct: 121 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 180
Query: 615 QFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTICSSVDK 794
QFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTICSSVDK
Sbjct: 181 QFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGVPDTKFRTICSSVDK 240
Query: 795 LDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP*LSQNKQGLGGAG 974
LDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDP LSQNKQ L G G
Sbjct: 241 LDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLG 300
Score = 56.6 bits (135), Expect(2) = e-179
Identities = 28/40 (70%), Positives = 31/40 (77%)
Frame = +2
Query: 1037 LDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L AR LDYYTGVI E LLQPP QAG++PLG G+VA GG
Sbjct: 322 LSLARGLDYYTGVIYEAVLLQPPAQAGEEPLGVGSVAAGG 361
>ref|XP_003354357.1| PREDICTED: probable histidyl-tRNA synthetase, mitochondrial-like
[Sus scrofa].
Length = 506
Score = 416 bits (1068), Expect(2) = e-125
Identities = 194/260 (74%), Positives = 229/260 (88%)
Frame = +3
Query: 195 LKAQLGPDEGKHKFVLKTPKGTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELK 374
L +QL P + K F+LKTPKGTRD+SP+QM VREK+ D+++ CFKRHGA+ +DTP FELK
Sbjct: 42 LASQLKPHKEKPNFILKTPKGTRDFSPQQMVVREKILDMVVSCFKRHGAKRLDTPAFELK 101
Query: 375 ETLTGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDN 554
E LT +YGEDS LIYDLKDQGGELLSLRYDLTVPFARYLAMNK+ +KRYH+ KV+RR++
Sbjct: 102 EMLTERYGEDSGLIYDLKDQGGELLSLRYDLTVPFARYLAMNKVKKMKRYHVGKVWRRES 161
Query: 555 PAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGL 734
P + +GRYREF QCDFDIAG FDPMIPDAECLKIMCEILS LQ+GDFL+KVNDRR+LDG+
Sbjct: 162 PTIVQGRYREFCQCDFDIAGHFDPMIPDAECLKIMCEILSGLQLGDFLIKVNDRRLLDGI 221
Query: 735 FAICGVPDTKFRTICSSVDKLDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLV 914
FA+CGVP++KF ICSSVDKLDKMSW++V++EMV ++GLAPEVADRIGDYVQ HGGVSLV
Sbjct: 222 FAVCGVPESKFHAICSSVDKLDKMSWKDVRHEMVAKRGLAPEVADRIGDYVQCHGGVSLV 281
Query: 915 EQLLQDP*LSQNKQGLGGAG 974
E +LQDP LS+NKQ L G G
Sbjct: 282 EDMLQDPELSRNKQALEGLG 301
Score = 51.2 bits (121), Expect(2) = e-125
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = +2
Query: 1037 LDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L AR LDYYTGVI E LLQ P QAG++PL G+VA GG
Sbjct: 323 LSLARGLDYYTGVIYEAVLLQTPAQAGEEPLNVGSVAAGG 362
>ref|XP_003124096.1| PREDICTED: probable histidyl-tRNA synthetase, mitochondrial-like
[Sus scrofa].
Length = 506
Score = 414 bits (1065), Expect(2) = e-124
Identities = 193/260 (74%), Positives = 229/260 (88%)
Frame = +3
Query: 195 LKAQLGPDEGKHKFVLKTPKGTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELK 374
L +QL P + K F+LKTPKGTRD+SP+QM VREK+ D+++ CFKRHGA+ +DTP FELK
Sbjct: 42 LASQLKPHKEKPNFILKTPKGTRDFSPQQMVVREKILDMVVSCFKRHGAKRLDTPAFELK 101
Query: 375 ETLTGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDN 554
E LT +YGEDS LIYDLKDQGGELLSLRYDLTVPFARYLAMNK+ +KRYH+ KV+RR++
Sbjct: 102 EMLTERYGEDSGLIYDLKDQGGELLSLRYDLTVPFARYLAMNKVKKMKRYHVGKVWRRES 161
Query: 555 PAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGL 734
P + +GRYREF QCDFDIAG FDPMIPDAEC+KIMCEILS LQ+GDFL+KVNDRR+LDG+
Sbjct: 162 PTIVQGRYREFCQCDFDIAGHFDPMIPDAECVKIMCEILSGLQLGDFLIKVNDRRLLDGI 221
Query: 735 FAICGVPDTKFRTICSSVDKLDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLV 914
FA+CGVP++KF ICSSVDKLDKMSW++V++EMV ++GLAPEVADRIGDYVQ HGGVSLV
Sbjct: 222 FAVCGVPESKFHAICSSVDKLDKMSWKDVRHEMVAKRGLAPEVADRIGDYVQCHGGVSLV 281
Query: 915 EQLLQDP*LSQNKQGLGGAG 974
E +LQDP LS+NKQ L G G
Sbjct: 282 EDMLQDPELSRNKQALEGLG 301
Score = 51.2 bits (121), Expect(2) = e-124
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = +2
Query: 1037 LDPARRLDYYTGVINEGGLLQPPCQAGKKPLGGGNVAPGG 1156
L AR LDYYTGVI E LLQ P QAG++PL G+VA GG
Sbjct: 323 LSLARGLDYYTGVIYEAVLLQTPAQAGEEPLNVGSVAAGG 362
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,022,866
Number of extensions: 819655
Number of successful extensions: 3238
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3235
Number of HSP's successfully gapped: 8
Length of query: 385
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 284
Effective length of database: 8,829,335
Effective search space: 2507531140
Effective search space used: 2507531140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000579
(1157 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 323 1e-85
>Sscrofa_Chr02
|| Length = 162569375
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 2 ggaagtcgtccgagctgaggctgtggccgccacagccgatctggacagcaatcagctccg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148345390 ggaagtcgtccgagctgaggctgtggccgccacagccgatctggacagcaatcagctccg 148345331
Query: 62 gctggcagccagtatggcagggcgtgagacgctggaggaactggtgcgacttcagggaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148345330 gctggcagccagtatggcagggcgtgagacgctggaggaactggtgcgacttcagggaga 148345271
Query: 122 gcgcgtgcggggccttaagcagcagaaggccagcactgagcag 164
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148345270 gcgcgtgcggggccttaagcagcagaaggccagcactgagcag 148345228
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 471 gttccttttgcgcgatacttggcaatgaataaactgaccaatattaaacgctaccacata 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148336938 gttccttttgcgcgatacttggcaatgaataaactgaccaatattaaacgctaccacata 148336879
Query: 531 gccaaagtgtatcggcgggataacccagcaatgaccagaggccggtatcgggaattctac 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148336878 gccaaagtgtatcggcgggataacccagcaatgaccagaggccggtatcgggaattctac 148336819
Query: 591 cagtgtg 597
|||||||
Sbjct: 148336818 cagtgtg 148336812
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 250 ccaagggcacgagagactacagtccccggcagatggccgttcgggagaaggtgtttgacg 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148340585 ccaagggcacgagagactacagtccccggcagatggccgttcgggagaaggtgtttgacg 148340526
Query: 310 tgatcatcggctgcttcaagcgccacggtgcggaagtgatcgacactcctgtgtttgaac 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148340525 tgatcatcggctgcttcaagcgccacggtgcggaagtgatcgacactcctgtgtttgaac 148340466
Query: 370 tgaagg 375
||||||
Sbjct: 148340465 tgaagg 148340460
Score = 210 bits (106), Expect = 1e-51
Identities = 109/110 (99%)
Strand = Plus / Minus
Query: 597 gactttgacattgccgggcagtttgaccccatgattcccgatgcggagtgcctgaagatc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148335921 gactttgacattgccgggcagtttgaccccatgattcccgatgcggagtgcctgaagatc 148335862
Query: 657 atgtgtgagatcctgagttcactccagataggcgattttctggtcaaggt 706
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 148335861 atgtgtgaaatcctgagttcactccagataggcgattttctggtcaaggt 148335812
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 703 aggtgaatgatcggcgcatcctggatgggctgtttgccatctgcggtgttcctgacacca 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148335673 aggtgaatgatcggcgcatcctggatgggctgtttgccatctgcggtgttcctgacacca 148335614
Query: 763 agttccgcaccatctgctcctcggtggacaagctggacaag 803
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 148335613 agttccgcaccatctgctcctcggtggacaagctggacaag 148335573
Score = 198 bits (100), Expect = 5e-48
Identities = 122/128 (95%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 897 ggcggggtatccctggtggaacagctactccaggatccctaactgtcccaaaacaaacag 956
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 148335025 ggcggggtatccctggtggaacagctactccaggatcctaaactgtcccaaaacaaacag 148334966
Query: 957 ggccttggaggggctgggagacctgaagctgctatttgaatacctgaccctgttttgcgt 1016
| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 148334965 g-ccttggagggcctgggagacctgaagctgctatttgaatacctgaccctgtttggcgt 148334907
Query: 1017 ccctgaca 1024
| ||||||
Sbjct: 148334906 cgctgaca 148334899
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 373 aggaaacactgactggaaagtacggggaagactctaagcttatctatgacctgaaggacc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148337963 aggaaacactgactggaaagtacggggaagactctaagcttatctatgacctgaaggacc 148337904
Query: 433 agggtggcgagctgctgtccctccgctatgacctcactgt 472
||||||||||||||||||||||||||||||||||||||||
Sbjct: 148337903 agggtggcgagctgctgtccctccgctatgacctcactgt 148337864
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 802 agatgtcctgggaagaagtaaagaatgagatggtgggagagaagggcctggcacccgagg 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148335343 agatgtcctgggaagaagtaaagaatgagatggtgggagagaagggcctggcacccgagg 148335284
Query: 862 tggccgaccgcattggggactacgtccaacagcacgg 898
|||||||||||||||||||||||||||||||||||||
Sbjct: 148335283 tggccgaccgcattggggactacgtccaacagcacgg 148335247
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 162 cagatcgaggaggaggtggcaaaactactgaaactgaaggcacagctcggccctgatgaa 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148344951 cagatcgaggaggaggtggcaaaactactgaaactgaaggcacagctcggccctgatgaa 148344892
Query: 222 gggaaacataagtttgtgctcaaaactcccaagg 255
||||||||||||||||||||||||||||||||||
Sbjct: 148344891 gggaaacataagtttgtgctcaaaactcccaagg 148344858
Score = 95.6 bits (48), Expect = 5e-17
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 1045 tgctcgaaggctggactactataccggggtgatcaatgagggcgggctgctgcaaccccc 1104
||||||| |||||||||||||||||||||||||| |||||| | ||||||||| |||||
Sbjct: 148334795 tgctcgagggctggactactataccggggtgatctatgaggcggtgctgctgcagccccc 148334736
Query: 1105 ttgccaagctggnnnnnnncccctgggtgggggcaatgtggcccctggagggc 1157
| ||||||||| |||||||||| ||||| ||||||| |||||||||
Sbjct: 148334735 tgcccaagctggagaagaacccctgggtgtgggcagtgtggccgctggagggc 148334683
Score = 81.8 bits (41), Expect = 8e-13
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 924 ctccaggatccctaactgtcccaaaacaaacagggccttggaggggctgggagacctgaa 983
||||||||||| ||||||||| ||||| |||| |||||||||| |||||||||||||
Sbjct: 148351078 ctccaggatcctgaactgtcccggaacaagcagg-ccttggagggcttgggagacctgaa 148351136
Query: 984 gctgctatttgaatacctgac 1004
|||||||||||| ||||||||
Sbjct: 148351137 gctgctatttgattacctgac 148351157
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,196,275
Number of extensions: 172
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 11
Length of query: 1157
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1136
Effective length of database: 2,808,413,156
Effective search space: 3190357345216
Effective search space used: 3190357345216
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)