Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000582
(2019 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus]. 138 3e-33
Alignment gi|XP_002683721.1| PREDICTED: hypothetical protein [Bos taurus]. 82 2e-15
Alignment gi|XP_002702746.1| PREDICTED: hypothetical protein [Bos taurus]. 82 2e-15
Alignment gi|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus]. 70 5e-12
Alignment gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype... 65 3e-10
Alignment gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo... 58 3e-08
Alignment gi|NP_001074373.1| hypothetical protein LOC509513 [Bos taurus]. 57 5e-08
Alignment gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus]. 55 2e-07
Alignment gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus]. 55 2e-07
Alignment gi|NP_001074380.1| signal-regulatory protein beta 1 [Bos taurus]. 51 4e-06
>ref|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].
Length = 487
Score = 138 bits (348), Expect(2) = 3e-33
Identities = 94/297 (31%), Positives = 145/297 (48%), Gaps = 10/297 (3%)
Frame = +3
Query: 1017 CQASDFSPKQ-ISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 1193
C F P +S+ W ++G V V P S Y + S LT+ S
Sbjct: 170 CLVQGFFPSAPLSVTWNQNGDSV--SVRNFPAVLAGS---LYTMSSQLTLPASLCPKGQS 224
Query: 1194 FTCQVEHKGLNYE--------KNASSLCTSNPNSPITVFAIAPSFAGIFLTKSAKLSCLV 1349
TCQV+H + +++SS C PN ++ P+ + L +A L+C +
Sbjct: 225 VTCQVQHLSKASKTVAVPCIIQDSSSCCV--PNCEPSLSVQPPALEDLLLGSNASLTCTL 282
Query: 1350 TGLVTRESLNISWTRQDGEVLKTSIVFSEIYAN-GTFGARGEASVCVEDWESGDRFTCTV 1526
+GL + E + +W G KT++ S + G + C + W SG F+C+V
Sbjct: 283 SGLKSAEGASFTWNPTGG---KTAVQGSPKRDSCGCYSVSSVLPGCADPWNSGQTFSCSV 339
Query: 1527 THTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQW 1706
TH + S L ++ K G P V++LPP EEL+L E ++TCLV+GFSP +V V+W
Sbjct: 340 THPESKSSLTATIKKDLGNT-FRPQVHLLPPPSEELALNELVTLTCLVRGFSPKEVLVRW 398
Query: 1707 LQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEAL 1877
LQ + + +KY+T ++ V SVL V A+ W G+T++C+VGHEAL
Sbjct: 399 LQGNQELPREKYLT-WGPLPEAGQSVTTFAVTSVLRVDAEVWKQGDTFSCMVGHEAL 454
Score = 23.5 bits (49), Expect(2) = 3e-33
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 1918 GKPTLYNVSLVLSE 1959
GKPT NVS+V+SE
Sbjct: 468 GKPTHVNVSVVMSE 481
Score = 92.0 bits (227), Expect = 2e-18
Identities = 95/338 (28%), Positives = 148/338 (43%), Gaps = 20/338 (5%)
Frame = +3
Query: 606 AESQSAPNLFPLVSCVSPPSDESLVALGCLARDFLPSS-VTFSWNYKNSSKVSSQNIQDF 782
+ES+++P++FPL + P+ + V +GCL + F PS+ ++ +WN +N VS +N F
Sbjct: 144 SESETSPSIFPLSLGNNDPAGQ--VVIGCLVQGFFPSAPLSVTWN-QNGDSVSVRN---F 197
Query: 783 PSVLRGGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPS-GTKSVSI-------SGPVVEE 938
P+VL G Y SS++ LP+ P+ + C+VQH S +K+V++ S V
Sbjct: 198 PAVLAGSLYTMSSQLTLPASLCPKGQS--VTCQVQHLSKASKTVAVPCIIQDSSSCCVPN 255
Query: 939 QPPVLNIFVPTRESFSSTPQRTSKLICQASDF-SPKQISMAWF-RDGKRVVSGVSTGPVE 1112
P L++ P E + L C S S + S W GK V G
Sbjct: 256 CEPSLSVQPPALEDLLLGSN--ASLTCTLSGLKSAEGASFTWNPTGGKTAVQG------S 307
Query: 1113 TLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSLCTSNPNSPIT---- 1280
+ S Y + S+L W S F+C V H E +S T + T
Sbjct: 308 PKRDSCGCYSVSSVLPGCADPWNSGQTFSCSVTHP----ESKSSLTATIKKDLGNTFRPQ 363
Query: 1281 VFAIAPSFAGIFLTKSAKLSCLVTGLVTRESLNISWTRQDGEVLKTS-IVFSEIYANG-- 1451
V + P + L + L+CLV G +E L + W + + E+ + + + + G
Sbjct: 364 VHLLPPPSEELALNELVTLTCLVRGFSPKEVL-VRWLQGNQELPREKYLTWGPLPEAGQS 422
Query: 1452 --TFGARGEASVCVEDWESGDRFTCTVTHTDLPSPLKQ 1559
TF V E W+ GD F+C V H LP Q
Sbjct: 423 VTTFAVTSVLRVDAEVWKQGDTFSCMVGHEALPLAFTQ 460
Score = 58.9 bits (141), Expect = 2e-08
Identities = 81/332 (24%), Positives = 121/332 (36%), Gaps = 30/332 (9%)
Frame = +3
Query: 963 VPTRESFSST--PQRTSKLICQASDFSPKQISMAWFRD--GKRV-VSGVSTGPVETLQSS 1127
V RES S P +T L C AS FS + W R GK + TG T +
Sbjct: 21 VQLRESGPSLVKPSQTLSLTCTASGFSLSSYGINWVRQAPGKALECLACITGGGNTAYNP 80
Query: 1128 PVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASS---LCTSNPN--------SP 1274
+ RL+ ++S+ +S S+ + E Y S+ C+S N
Sbjct: 81 ALKSRLNITKDKSKSQ-VSLSLSSVTTEDTATYYCAKYSTDDCACSSERNYIDAWGQGLL 139
Query: 1275 ITVFAIAPSFAGIFLTK--------SAKLSCLVTGLVTRESLNISWTRQDGEVLKTSIVF 1430
+TV + + + IF + CLV G L+++W + V + F
Sbjct: 140 VTVSSESETSPSIFPLSLGNNDPAGQVVIGCLVQGFFPSAPLSVTWNQNGDSVSVRN--F 197
Query: 1431 SEIYANGTFGARGEASVCVEDWESGDRFTCTVTHTDLPS-----PLKQSVSKPRGIARHM 1595
+ A + + ++ G TC V H S P S +
Sbjct: 198 PAVLAGSLYTMSSQLTLPASLCPKGQSVTCQVQHLSKASKTVAVPCIIQDSSSCCVPNCE 257
Query: 1596 PSVYVLPPAPEELSLQEWASVTCLVKGFSPAD-VFVQWLQKGEPVSADKYVTSXXXXXXX 1772
PS+ V PPA E+L L AS+TC + G A+ W G +
Sbjct: 258 PSLSVQPPALEDLLLGSNASLTCTLSGLKSAEGASFTWNPTGGKTAVQ--------GSPK 309
Query: 1773 XXXXXSYFVQSVLTVSAKDWSDGETYTCVVGH 1868
Y V SVL A W+ G+T++C V H
Sbjct: 310 RDSCGCYSVSSVLPGCADPWNSGQTFSCSVTH 341
>ref|XP_002683721.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 97
Score = 81.6 bits (200), Expect = 2e-15
Identities = 41/55 (74%), Positives = 42/55 (76%)
Frame = -3
Query: 1747 VTYLSADTGSPFCSHCTNTSAGEKPFTRQVTEAHSCRLSSSGAGGSTYTDGMCLA 1583
VTYL TGSP CSHCTNTSAG KPFTRQVTEA S RLS S GGS YTDG +A
Sbjct: 19 VTYLLLVTGSPLCSHCTNTSAGAKPFTRQVTEADSRRLSCSRVGGSRYTDGGFMA 73
>ref|XP_002702746.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 97
Score = 81.6 bits (200), Expect = 2e-15
Identities = 41/55 (74%), Positives = 42/55 (76%)
Frame = -3
Query: 1747 VTYLSADTGSPFCSHCTNTSAGEKPFTRQVTEAHSCRLSSSGAGGSTYTDGMCLA 1583
VTYL TGSP CSHCTNTSAG KPFTRQVTEA S RLS S GGS YTDG +A
Sbjct: 19 VTYLLLVTGSPLCSHCTNTSAGAKPFTRQVTEADSRRLSCSRVGGSRYTDGGFMA 73
>ref|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].
Length = 260
Score = 70.5 bits (171), Expect = 5e-12
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Frame = +3
Query: 849 PQDPEAFLVCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQAS 1028
P+ P A+ SGTK ++ P + PP + +F P+ E S+ T+ L+C S
Sbjct: 136 PEGPSAWFT----FGSGTK---VTIPDQPKFPPSVTLFPPSTEELSTY---TATLVCLIS 185
Query: 1029 DFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQV 1208
DF P +++AW DG V GV T + Q S Y S LT+T SEW +S ++C+V
Sbjct: 186 DFYPGNVTVAWKADGSPVTRGVVTS--QASQQSSSKYVASSYLTLTGSEWKPKSSYSCEV 243
Query: 1209 EHKGLNYEKNAS-SLCT 1256
H+G K S C+
Sbjct: 244 THEGSTVTKTVKPSACS 260
Score = 54.7 bits (130), Expect = 3e-07
Identities = 33/92 (35%), Positives = 45/92 (48%)
Frame = +3
Query: 1596 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1775
PSV + PP+ EELS A++ CL+ F P +V V W G PV+ VTS
Sbjct: 161 PSVTLFPPSTEELSTYT-ATLVCLISDFYPGNVTVAWKADGSPVTRG-VVTS----QASQ 214
Query: 1776 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHE 1871
Y S LT++ +W +Y+C V HE
Sbjct: 215 QSSSKYVASSYLTLTGSEWKPKSSYSCEVTHE 246
>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
taurus].
Length = 236
Score = 64.7 bits (156), Expect = 3e-10
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Frame = +3
Query: 897 GTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGK 1076
GT+ + P + PP + +F P++E S+ + L+C SDF P +++AW DG
Sbjct: 124 GTRVTVLGQP---KSPPSVTLFPPSKEELSANK---ATLVCLISDFYPGSVTVAWKADGS 177
Query: 1077 RVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNA-SSLC 1253
+ V T + S Y S L++T+S+W S+ ++C+V H+G K +S C
Sbjct: 178 TITRNVKT--TRASKQSNSKYAASSYLSLTDSDWKSKGSYSCEVTHEGSTVTKTVKTSAC 235
Query: 1254 T 1256
+
Sbjct: 236 S 236
Score = 51.6 bits (122), Expect = 3e-06
Identities = 30/98 (30%), Positives = 45/98 (45%)
Frame = +3
Query: 1578 GIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXX 1757
G + PSV + PP+ EELS + A++ CL+ F P V V W G ++ + T
Sbjct: 131 GQPKSPPSVTLFPPSKEELSANK-ATLVCLISDFYPGSVTVAWKADGSTITRNVKTT--- 186
Query: 1758 XXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHE 1871
Y S L+++ DW +Y+C V HE
Sbjct: 187 --RASKQSNSKYAASSYLSLTDSDWKSKGSYSCEVTHE 222
>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
Length = 235
Score = 58.2 bits (139), Expect = 3e-08
Identities = 29/100 (29%), Positives = 49/100 (49%)
Frame = +3
Query: 936 EQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVET 1115
+ PP + +F P+ E + + L+C SDF P +++ W DG + V T
Sbjct: 133 KSPPSVTLFPPSTEELNGNK---ATLVCLISDFYPGSVTVVWKADGSTITRNVET--TRA 187
Query: 1116 LQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEK 1235
+ S Y S L++T S+W S+ ++C+V H+G K
Sbjct: 188 SKQSNSKYAASSYLSLTSSDWKSKGSYSCEVTHEGSTVTK 227
Score = 50.1 bits (118), Expect = 7e-06
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +3
Query: 1578 GIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXX 1757
G + PSV + PP+ EEL+ + A++ CL+ F P V V W G ++ + T
Sbjct: 130 GQPKSPPSVTLFPPSTEELNGNK-ATLVCLISDFYPGSVTVVWKADGSTITRNVETTRAS 188
Query: 1758 XXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHE 1871
Y S L++++ DW +Y+C V HE
Sbjct: 189 KQSNS-----KYAASSYLSLTSSDWKSKGSYSCEVTHE 221
>ref|NP_001074373.1| hypothetical protein LOC509513 [Bos taurus].
Length = 312
Score = 57.4 bits (137), Expect = 5e-08
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Frame = +3
Query: 897 GTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGK 1076
GTK ++I + PP + +F P+ S T + T L+C A+ F P + + W+ + K
Sbjct: 128 GTK-LTIVDDLSRVHPPKVAVFEPSEAEISRTQKAT--LVCLATGFYPDHVELTWWVNRK 184
Query: 1077 RVVSGVSTGPVETLQSSPV----TYRLHSMLTVTESEWLS-QSVFTCQVEHKGL 1223
+V +GVST P E+ + P Y L S L VT + W + ++ F CQV+ GL
Sbjct: 185 QVTTGVSTDP-ESYKEDPARDDSRYCLSSRLRVTAAFWHNPRNHFRCQVQFHGL 237
>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 55.1 bits (131), Expect = 2e-07
Identities = 31/93 (33%), Positives = 45/93 (48%)
Frame = +3
Query: 945 PVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQS 1124
P + +F P+ E + T ++C +DF PK I++ W DG S S
Sbjct: 133 PSVFLFKPSDEQLKTG---TVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDS 189
Query: 1125 SPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGL 1223
TY L S+LT+ SE+ S +TC+V HK L
Sbjct: 190 KKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSL 222
Score = 52.4 bits (124), Expect = 2e-06
Identities = 29/94 (30%), Positives = 47/94 (50%)
Frame = +3
Query: 1596 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1775
PSV++ P+ E+L SV CLV F P D+ V+W G S+ + S
Sbjct: 133 PSVFLFKPSDEQLKTGT-VSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKK 191
Query: 1776 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEAL 1877
+Y + S+LT+ + ++ + YTC V H++L
Sbjct: 192 S---TYSLSSILTLPSSEYQSHDAYTCEVSHKSL 222
>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 55.1 bits (131), Expect = 2e-07
Identities = 31/93 (33%), Positives = 45/93 (48%)
Frame = +3
Query: 945 PVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQS 1124
P + +F P+ E + T ++C +DF PK I++ W DG S S
Sbjct: 133 PSVFLFKPSDEQLKTG---TVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDS 189
Query: 1125 SPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGL 1223
TY L S+LT+ SE+ S +TC+V HK L
Sbjct: 190 KKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSL 222
Score = 52.4 bits (124), Expect = 2e-06
Identities = 29/94 (30%), Positives = 47/94 (50%)
Frame = +3
Query: 1596 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1775
PSV++ P+ E+L SV CLV F P D+ V+W G S+ + S
Sbjct: 133 PSVFLFKPSDEQLKTGT-VSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKK 191
Query: 1776 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEAL 1877
+Y + S+LT+ + ++ + YTC V H++L
Sbjct: 192 S---TYSLSSILTLPSSEYQSHDAYTCEVSHKSL 222
>ref|NP_001074380.1| signal-regulatory protein beta 1 [Bos taurus].
Length = 386
Score = 50.8 bits (120), Expect = 4e-06
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 4/196 (2%)
Frame = +3
Query: 987 STPQRTSKLICQASDFSPKQISMAWFRDGKRV-VSGVSTGPVETLQSSPVTYRLHSMLTV 1163
+TP++T C + FSP+ IS+ WF++G + S S P E VTY + S +
Sbjct: 158 ATPEQTVSFTCTSHGFSPRNISLKWFKNGNELSASQTSVDPEE----DGVTYSITSTTEL 213
Query: 1164 TESEWLSQSVFTCQVEHKGLNYEK--NASSLCTSNPNSPITVFAIAPSFAGIFLTKSAKL 1337
+ S +C+V H L + ++ + P T+ AG + +
Sbjct: 214 LLAPGDVHSQVSCEVAHVTLQGSRPLRGTASLSKTIRVPPTLEVTQQPMAG---NQVNII 270
Query: 1338 SCLVTGLVTRESLNISWTRQDGEVLKTSIVFSEI-YANGTFGARGEASVCVEDWESGDRF 1514
+CLV ++ L ++W ++G + +T + I +GTF V F
Sbjct: 271 TCLVNKFYPQQ-LQLTWL-ENGNMSRTEAASTLIENKDGTFNYMSWLLVISSAHRKAVVF 328
Query: 1515 TCTVTHTDLPSPLKQS 1562
TC V H P+ K S
Sbjct: 329 TCQVEHDGQPAVTKNS 344
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 70,940,384
Number of extensions: 2224788
Number of successful extensions: 13177
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 12888
Number of HSP's successfully gapped: 18
Length of query: 673
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 564
Effective length of database: 14,074,782
Effective search space: 7938177048
Effective search space used: 7938177048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000582
(2019 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851420.1| PREDICTED: similar to protein tyrosine phosphat... 67 8e-11
Alignment gi|XP_856755.1| PREDICTED: similar to T-cell receptor beta chai... 65 3e-10
Alignment gi|XP_857540.1| PREDICTED: similar to T-cell receptor beta chai... 64 4e-10
Alignment gi|XP_859202.1| PREDICTED: similar to immunoglobulin iota chain... 64 5e-10
Alignment gi|XP_857671.1| PREDICTED: similar to immunoglobulin iota chain... 64 5e-10
Alignment gi|XP_855777.1| PREDICTED: similar to Immunoglobulin lambda-lik... 64 7e-10
Alignment gi|XP_858035.1| PREDICTED: similar to immunoglobulin iota chain... 63 1e-09
Alignment gi|XP_848579.1| PREDICTED: similar to Immunoglobulin lambda-lik... 62 2e-09
Alignment gi|XP_856106.1| PREDICTED: similar to Immunoglobulin lambda-lik... 62 2e-09
Alignment gi|XP_857254.1| PREDICTED: similar to T-cell receptor beta chai... 62 2e-09
>ref|XP_851420.1| PREDICTED: similar to protein tyrosine phosphatase, non-receptor type
substrate 1 precursor, partial [Canis familiaris].
Length = 635
Score = 66.6 bits (161), Expect = 8e-11
Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 16/211 (7%)
Frame = +3
Query: 636 PLVSCVSPPS----DESLVALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGG 803
P VS P+ + V+ C + F P S+T W +KN +++++ +P
Sbjct: 189 PSTPVVSGPTARVMPQQTVSFTCKSHGFSPRSITLRW-FKNGNELTASQTTVYPEEDNAS 247
Query: 804 KYLASSRVLLPSVSIPQDPEAFLVCEVQHPS--------GTKSVSISGPVVEEQPPVLNI 959
++S+ L V P D + ++CEV H + GT S+S V PP L +
Sbjct: 248 YNISSTTKL---VLAPGDVRSQVICEVAHVTLQGDPPLRGTASLS----EVLRVPPTLEV 300
Query: 960 FVPTRESFSSTPQRTSKL--ICQASDFSPKQISMAWFRDGKRVVSGVSTGPVET--LQSS 1127
S P ++ ICQ +F P+++ + W +G VS T V + L++
Sbjct: 301 --------SQHPMARDQIYVICQVEEFYPQRLQLTWLENGN--VSRTETPSVASNLLENK 350
Query: 1128 PVTYRLHSMLTVTESEWLSQSVFTCQVEHKG 1220
T+ S L V S VFTCQV+H G
Sbjct: 351 DGTFNWMSWLLVNSSTHREDVVFTCQVQHDG 381
>ref|XP_856755.1| PREDICTED: similar to T-cell receptor beta chain C region isoform 5
[Canis familiaris].
Length = 316
Score = 64.7 bits (156), Expect = 3e-10
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Frame = +3
Query: 756 VSSQNIQDFPSVLRGGK-------YLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTKSVS 914
VS + FP +L + + ASS + S + + + + SGTK +S
Sbjct: 85 VSRKKKDAFPLILESARINQTSVYFCASSNIYRESAGLCNNEKLYFA------SGTK-LS 137
Query: 915 ISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGV 1094
+ + + PP + +F P+ S T + T L+C A+ F P + ++W+ +GK V SG
Sbjct: 138 VLEDLQKVTPPTVTVFEPSEAEISRTQKAT--LVCLATGFYPDHVELSWWVNGKEVTSGF 195
Query: 1095 STGP---VETLQSSPVTYRLHSMLTVTESEWLS-QSVFTCQVEHKGL 1223
ST P E + +Y L S L V+ S W + ++ F CQV+ GL
Sbjct: 196 STDPQPYKERPSENDSSYCLSSRLRVSASFWHNPRNHFRCQVQFYGL 242
>ref|XP_857540.1| PREDICTED: similar to T-cell receptor beta chain C region isoform 23
[Canis familiaris].
Length = 310
Score = 64.3 bits (155), Expect = 4e-10
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 9/173 (5%)
Frame = +3
Query: 732 WNYKNSSKVSSQNIQDFPSVLRGGK-----YLASSRVLLPSVSIPQDPEAFLVCEVQHPS 896
W+Y N V + +I SV R K L S+R+ SV + + QH
Sbjct: 67 WSY-NIDSVETGDIPYGYSVSRKKKDAFPLILESARINQTSVYFCASSPGGMENQAQHFG 125
Query: 897 GTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGK 1076
+S+ + + PP + +F P+ S T + T L+C A+ F P + ++W+ +GK
Sbjct: 126 DGTRLSVLEDLQKVTPPTVTVFEPSEAEISRTQKAT--LVCLATGFYPDHVELSWWVNGK 183
Query: 1077 RVVSGVSTGP---VETLQSSPVTYRLHSMLTVTESEWLS-QSVFTCQVEHKGL 1223
V SG ST P E + +Y L S L V+ S W + ++ F CQV+ GL
Sbjct: 184 EVTSGFSTDPQPYKERPSENDSSYCLSSRLRVSASFWHNPRNHFRCQVQFYGL 236
>ref|XP_859202.1| PREDICTED: similar to immunoglobulin iota chain preproprotein isoform
46 [Canis familiaris].
Length = 241
Score = 63.9 bits (154), Expect = 5e-10
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Frame = +3
Query: 798 GGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPSG----TKSVSISGPVVEEQPPVLNIFV 965
G K +A + L + + EA C +HPS ++ + ++ + P + +F+
Sbjct: 89 GSKDVAKNTGYLSISELQPEDEATYFCAWRHPSPWFVFSEGIELTVLGQPKASPSVTLFL 148
Query: 966 PTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRL 1145
P + + L+C SDF P +++AW DG V GV T + + S Y
Sbjct: 149 PLSGELGADK---ATLVCLISDFYPSGVTVAWKADGSPVTQGVET--TKPSRQSNNKYAA 203
Query: 1146 HSMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS 1244
S L++T +W S S F+C V H+G EK +
Sbjct: 204 SSYLSLTPDKWKSHSSFSCLVTHEGSTVEKKVA 236
>ref|XP_857671.1| PREDICTED: similar to immunoglobulin iota chain preproprotein isoform
8 [Canis familiaris].
Length = 240
Score = 63.9 bits (154), Expect = 5e-10
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Frame = +3
Query: 798 GGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTK---SVSISGPVVEEQPPVLNIFVP 968
G K +A + L + + EA C + S+SGP + P + +F+P
Sbjct: 89 GSKDVAKNTGYLSISELQPEDEATYFCATWDEARVGCGGGTSLSGPRQPKASPSVTLFLP 148
Query: 969 TRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLH 1148
+ + L+C SDF P +++AW DG V GV T + + S Y
Sbjct: 149 LSGELGADK---ATLVCLISDFYPSGVTVAWKADGSPVTQGVET--TKPSRQSNNKYAAS 203
Query: 1149 SMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS 1244
S L++T +W S S F+C V H+G EK +
Sbjct: 204 SYLSLTPDKWKSHSSFSCLVTHEGSTVEKKVA 235
>ref|XP_855777.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 2 [Canis familiaris].
Length = 233
Score = 63.5 bits (153), Expect = 7e-10
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Frame = +3
Query: 855 DPEAFLVCEVQHPSGTKSVSISGP--VVEEQP---PVLNIFVPTRESFSSTPQRTSKLIC 1019
+ EA C+V SG V G V QP P++ +F P+ E + + L+C
Sbjct: 99 EDEADYYCQVWDSSGHCWVFGEGTQLTVLGQPKSSPLVTLFPPSSEELGANK---ATLVC 155
Query: 1020 QASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFT 1199
SDF P + +AW DG ++ GV T + + S Y S L++T +W S S F+
Sbjct: 156 LISDFYPSGLKVAWKADGSTIIQGVET--TKPSKQSNNKYTASSYLSLTPDKWKSHSSFS 213
Query: 1200 CQVEHKGLNYEKNAS 1244
C V H+G EK +
Sbjct: 214 CLVTHQGSTVEKKVA 228
>ref|XP_858035.1| PREDICTED: similar to immunoglobulin iota chain preproprotein isoform
17 [Canis familiaris].
Length = 250
Score = 62.8 bits (151), Expect = 1e-09
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 13/162 (8%)
Frame = +3
Query: 798 GGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTKSVS------ISGPVVE-------E 938
G K +A + L + + EA C H ++VS I G +E +
Sbjct: 89 GSKDVAKNTGYLSISELQPEDEATYFCAAHHVPACETVSGATVGWIDGEGIELTVLGQPK 148
Query: 939 QPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETL 1118
P + +F+P + + L+C SDF P +++AW DG V GV T +
Sbjct: 149 ASPSVTLFLPLSGELGADK---ATLVCLISDFYPSGVTVAWKADGSPVTQGVET--TKPS 203
Query: 1119 QSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS 1244
+ S Y S L++T +W S S F+C V H+G EK +
Sbjct: 204 RQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHEGSTVEKKVA 245
>ref|XP_848579.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 1 [Canis familiaris].
Length = 233
Score = 62.4 bits (150), Expect = 2e-09
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Frame = +3
Query: 861 EAFLVCEVQHPS--------GTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLI 1016
EA C+V S GT+ + P + P++ +F P+ E + + L+
Sbjct: 101 EADYYCQVWESSADCWVFGEGTQLTVLGQP---KSSPLVTLFPPSSEELGANK---ATLV 154
Query: 1017 CQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVF 1196
C SDF P + +AW DG ++ GV T + + S Y S L++T +W S S F
Sbjct: 155 CLISDFYPSGLKVAWKADGSTIIQGVET--TKPSKQSNNKYTASSYLSLTPDKWKSHSSF 212
Query: 1197 TCQVEHKGLNYEKNAS 1244
+C V H+G EK +
Sbjct: 213 SCLVTHQGSTVEKKVA 228
>ref|XP_856106.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 10 [Canis familiaris].
Length = 231
Score = 62.4 bits (150), Expect = 2e-09
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Frame = +3
Query: 861 EAFLVCEVQHPS------GTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQ 1022
EA C+V S GT+ + P + P++ +F P+ E + + L+C
Sbjct: 101 EADYYCQVSLGSCWVFGEGTQLTVLGQP---KSSPLVTLFPPSSEELGANK---ATLVCL 154
Query: 1023 ASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTC 1202
SDF P + +AW DG ++ GV T + + S Y S L++T +W S S F+C
Sbjct: 155 ISDFYPSGLKVAWKADGSTIIQGVET--TKPSKQSNNKYTASSYLSLTPDKWKSHSSFSC 212
Query: 1203 QVEHKGLNYEKNAS 1244
V H+G EK +
Sbjct: 213 LVTHQGSTVEKKVA 226
>ref|XP_857254.1| PREDICTED: similar to T-cell receptor beta chain C region isoform 16
[Canis familiaris].
Length = 307
Score = 62.4 bits (150), Expect = 2e-09
Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 9/173 (5%)
Frame = +3
Query: 732 WNYKNSSKVSSQNIQDFPSVLRGGK-----YLASSRVLLPSVSIPQDPEAFLVCEVQHPS 896
W+Y N V + +I SV R K L S+R+ SV E L QH
Sbjct: 67 WSY-NIDSVETGDIPYGYSVSRKKKDAFPLILESARINQTSVYFCASTEWSLA---QHFG 122
Query: 897 GTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGK 1076
+S+ + + PP + +F P+ S T + T L+C A+ F P + ++W+ +GK
Sbjct: 123 DGTRLSVLEDLQKVTPPTVTVFEPSEAEISRTQKAT--LVCLATGFYPDHVELSWWVNGK 180
Query: 1077 RVVSGVSTGP---VETLQSSPVTYRLHSMLTVTESEWLS-QSVFTCQVEHKGL 1223
V SG ST P E + +Y L S L V+ S W + ++ F CQV+ GL
Sbjct: 181 EVTSGFSTDPQPYKERPSENDSSYCLSSRLRVSASFWHNPRNHFRCQVQFYGL 233
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,079,029
Number of extensions: 2299457
Number of successful extensions: 13992
Number of sequences better than 1.0e-05: 119
Number of HSP's gapped: 13621
Number of HSP's successfully gapped: 130
Length of query: 673
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 563
Effective length of database: 15,207,544
Effective search space: 8561847272
Effective search space used: 8561847272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000582
(2019 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Ho... 62 3e-09
Alignment gi|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isofor... 55 2e-07
Alignment gi|NP_061026.2| signal-regulatory protein gamma isoform 1 precu... 54 4e-07
>ref|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Homo sapiens].
Length = 214
Score = 61.6 bits (148), Expect = 3e-09
Identities = 36/117 (30%), Positives = 57/117 (48%)
Frame = +3
Query: 894 SGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDG 1073
+GTK + P P + +F P+ E + + L+C SDF P +++AW DG
Sbjct: 101 TGTKVTVLGQPKAN---PTVTLFPPSSEELQANK---ATLVCLISDFYPGAVTVAWKADG 154
Query: 1074 KRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS 1244
V +GV T + + S Y S L++T +W S ++CQV H+G EK +
Sbjct: 155 SPVKAGVET--TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 209
Score = 51.6 bits (122), Expect = 3e-06
Identities = 29/92 (31%), Positives = 42/92 (45%)
Frame = +3
Query: 1596 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1775
P+V + PP+ EEL + A++ CL+ F P V V W G PV A T
Sbjct: 115 PTVTLFPPSSEELQANK-ATLVCLISDFYPGAVTVAWKADGSPVKAGVETTK-----PSK 168
Query: 1776 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHE 1871
Y S L+++ + W +Y+C V HE
Sbjct: 169 QSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE 200
>ref|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isoform a precursor [Homo
sapiens].
Length = 213
Score = 55.1 bits (131), Expect = 2e-07
Identities = 33/117 (28%), Positives = 56/117 (47%)
Frame = +3
Query: 894 SGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDG 1073
SGT+ +S P + P + +F P+ E + + L+C +DF P +++ W DG
Sbjct: 100 SGTQLTVLSQP---KATPSVTLFPPSSEELQANK---ATLVCLMNDFYPGILTVTWKADG 153
Query: 1074 KRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS 1244
+ GV + S Y S L++T +W S+ ++CQV H+G EK +
Sbjct: 154 TPITQGVEM--TTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTVA 208
>ref|NP_061026.2| signal-regulatory protein gamma isoform 1 precursor [Homo sapiens].
Length = 387
Score = 54.3 bits (129), Expect = 4e-07
Identities = 57/230 (24%), Positives = 87/230 (37%), Gaps = 16/230 (6%)
Frame = +3
Query: 669 ESLVALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGGKYLASSRVLLPSVSI 848
E V+ C + F P +T W +KN +++S P+ G S R V
Sbjct: 161 EHTVSFTCESHGFSPRDITLKW-FKNGNELSDFQTNVDPT---GQSVAYSIRSTARVVLD 216
Query: 849 PQDPEAFLVCEVQHPSGTKSVSISGPVVEEQPPVLN-IFVPTRESFSSTPQRTSKLI--- 1016
P D + ++CEV H V++ G + + I VP + P R +
Sbjct: 217 PWDVRSQVICEVAH------VTLQGDPLRGTANLSEAIRVPPTLEVTQQPMRVGNQVNVT 270
Query: 1017 CQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVF 1196
CQ F P+ + + W +G V T T ++ TY S V S+ V
Sbjct: 271 CQVRKFYPQSLQLTWSENGN--VCQRETASTLT-ENKDGTYNWTSWFLVNISDQRDDVVL 327
Query: 1197 TCQVEHKG------------LNYEKNASSLCTSNPNSPITVFAIAPSFAG 1310
TCQV+H G ++K+ SS T P S +T + G
Sbjct: 328 TCQVKHDGQLAVSKRLALEVTVHQKDQSSDATPGPASSLTALLLIAVLLG 377
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,259,352
Number of extensions: 2223938
Number of successful extensions: 12557
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12243
Number of HSP's successfully gapped: 4
Length of query: 673
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 564
Effective length of database: 14,704,088
Effective search space: 8293105632
Effective search space used: 8293105632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000582
(2019 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1... 127 4e-29
Alignment gi|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musc... 127 4e-29
Alignment gi|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mu... 120 4e-27
Alignment gi|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mu... 56 1e-07
Alignment gi|XP_923633.3| PREDICTED: tyrosine-protein phosphatase non-rec... 55 3e-07
Alignment gi|NP_808321.1| hypothetical protein LOC228592 [Mus musculus]. 54 5e-07
Alignment gi|NP_001166930.1| signal-regulatory protein beta 1-like [Mus m... 54 6e-07
Alignment gi|NP_001171117.1| tyrosine-protein phosphatase non-receptor ty... 52 2e-06
Alignment gi|NP_031573.2| tyrosine-protein phosphatase non-receptor type ... 52 2e-06
Alignment gi|NP_001166931.1| signal-regulatory protein beta 1B [Mus muscu... 52 2e-06
>ref|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].
Length = 354
Score = 127 bits (318), Expect = 4e-29
Identities = 90/297 (30%), Positives = 138/297 (46%), Gaps = 10/297 (3%)
Frame = +3
Query: 1017 CQASDFSPK-QISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 1193
C D+ P +++ W + GK + + V+ P +S Y + S LT+ E
Sbjct: 36 CLIHDYFPSGTMNVTWGKSGKDITT-VNFPPA---LASGGRYTMSSQLTLPAVECPEGES 91
Query: 1194 FTCQVEHKGLNYEKNASSLCTSNPNSPITVFAIAPSFA-------GIFLTKSAKLSCLVT 1352
C V+H ++ + P PIT+ + PS + + L A ++C +
Sbjct: 92 VKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPALEDLLLGSDASITCTLN 151
Query: 1353 GLVTRESLNISWTRQDGE--VLKTSIVFSEIYANGTFGARGEASVCVEDWESGDRFTCTV 1526
GL E +W G+ V K ++ S G + C E W SG F CTV
Sbjct: 152 GLRNPEGAVFTWEPSTGKDAVQKKAVQNS----CGCYSVSSVLPGCAERWNSGASFKCTV 207
Query: 1527 THTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQW 1706
TH + L +++K + P V++LPP EEL+L E S+TCLV+ F+P +V V+W
Sbjct: 208 THPE-SGTLTGTIAKVT-VNTFPPQVHLLPPPSEELALNELLSLTCLVRAFNPKEVLVRW 265
Query: 1707 LQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEAL 1877
L E +S + Y+ +Y V SVL VSA+ W G+ Y+C+VGHEAL
Sbjct: 266 LHGNEELSPESYLV-FEPLKEPGEGATTYLVTSVLRVSAETWKQGDQYSCMVGHEAL 321
Score = 85.1 bits (209), Expect = 2e-16
Identities = 87/336 (25%), Positives = 138/336 (41%), Gaps = 19/336 (5%)
Frame = +3
Query: 609 ESQSAPNLFPLVSCVSPPSDESLVALGCLARDFLPS-SVTFSWNYKNSSKVSSQNIQDFP 785
ES P ++PL + P V +GCL D+ PS ++ +W K+ +++ N P
Sbjct: 11 ESARNPTIYPLT--LPPALSSDPVIIGCLIHDYFPSGTMNVTWG-KSGKDITTVNFP--P 65
Query: 786 SVLRGGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTKS---VSISGPVVEEQPPVLN 956
++ GG+Y SS++ LP+V P+ + C VQH S V+ SGP PP +
Sbjct: 66 ALASGGRYTMSSQLTLPAVECPEGES--VKCSVQHDSNPVQELDVNCSGPT---PPPPIT 120
Query: 957 IFVPTRESFSSTPQRTSKLICQASDFS----------PKQISMAWFRDGKRVVSGVSTGP 1106
I P+ + S + + + SD S P+ W +G
Sbjct: 121 I--PSCQPSLSLQRPALEDLLLGSDASITCTLNGLRNPEGAVFTW-----EPSTGKDAVQ 173
Query: 1107 VETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSLCTSNPNSPITVF 1286
+ +Q+S Y + S+L W S + F C V H + T N P V
Sbjct: 174 KKAVQNSCGCYSVSSVLPGCAERWNSGASFKCTVTHPESGTLTGTIAKVTVNTFPP-QVH 232
Query: 1287 AIAPSFAGIFLTKSAKLSCLVTGLVTRESLNISWTRQDGEVLKTS-IVFSEIYANG---- 1451
+ P + L + L+CLV +E L + W + E+ S +VF + G
Sbjct: 233 LLPPPSEELALNELLSLTCLVRAFNPKEVL-VRWLHGNEELSPESYLVFEPLKEPGEGAT 291
Query: 1452 TFGARGEASVCVEDWESGDRFTCTVTHTDLPSPLKQ 1559
T+ V E W+ GD+++C V H LP Q
Sbjct: 292 TYLVTSVLRVSAETWKQGDQYSCMVGHEALPMNFTQ 327
>ref|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musculus].
Length = 413
Score = 127 bits (318), Expect = 4e-29
Identities = 90/297 (30%), Positives = 138/297 (46%), Gaps = 10/297 (3%)
Frame = +3
Query: 1017 CQASDFSPK-QISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 1193
C D+ P +++ W + GK + + V+ P +S Y + S LT+ E
Sbjct: 95 CLIHDYFPSGTMNVTWGKSGKDITT-VNFPPA---LASGGRYTMSSQLTLPAVECPEGES 150
Query: 1194 FTCQVEHKGLNYEKNASSLCTSNPNSPITVFAIAPSFA-------GIFLTKSAKLSCLVT 1352
C V+H ++ + P PIT+ + PS + + L A ++C +
Sbjct: 151 VKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPALEDLLLGSDASITCTLN 210
Query: 1353 GLVTRESLNISWTRQDGE--VLKTSIVFSEIYANGTFGARGEASVCVEDWESGDRFTCTV 1526
GL E +W G+ V K ++ S G + C E W SG F CTV
Sbjct: 211 GLRNPEGAVFTWEPSTGKDAVQKKAVQNS----CGCYSVSSVLPGCAERWNSGASFKCTV 266
Query: 1527 THTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQW 1706
TH + L +++K + P V++LPP EEL+L E S+TCLV+ F+P +V V+W
Sbjct: 267 THPE-SGTLTGTIAKVT-VNTFPPQVHLLPPPSEELALNELLSLTCLVRAFNPKEVLVRW 324
Query: 1707 LQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEAL 1877
L E +S + Y+ +Y V SVL VSA+ W G+ Y+C+VGHEAL
Sbjct: 325 LHGNEELSPESYLV-FEPLKEPGEGATTYLVTSVLRVSAETWKQGDQYSCMVGHEAL 380
Score = 85.5 bits (210), Expect = 1e-16
Identities = 90/356 (25%), Positives = 145/356 (40%), Gaps = 24/356 (6%)
Frame = +3
Query: 564 EFFQ*WESPVTGHQ-----AESQSAPNLFPLVSCVSPPSDESLVALGCLARDFLPS-SVT 725
+F+ W G + A+S P ++PL + P V +GCL D+ PS ++
Sbjct: 50 DFYMEWVRQPPGKRLEWIAAKSARNPTIYPLT--LPPALSSDPVIIGCLIHDYFPSGTMN 107
Query: 726 FSWNYKNSSKVSSQNIQDFPSVLRGGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTK 905
+W K+ +++ N P++ GG+Y SS++ LP+V P+ + C VQH S
Sbjct: 108 VTWG-KSGKDITTVNFP--PALASGGRYTMSSQLTLPAVECPEGES--VKCSVQHDSNPV 162
Query: 906 S---VSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFS----------PKQ 1046
V+ SGP PP + I P+ + S + + + SD S P+
Sbjct: 163 QELDVNCSGPT---PPPPITI--PSCQPSLSLQRPALEDLLLGSDASITCTLNGLRNPEG 217
Query: 1047 ISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLN 1226
W +G + +Q+S Y + S+L W S + F C V H
Sbjct: 218 AVFTW-----EPSTGKDAVQKKAVQNSCGCYSVSSVLPGCAERWNSGASFKCTVTHPESG 272
Query: 1227 YEKNASSLCTSNPNSPITVFAIAPSFAGIFLTKSAKLSCLVTGLVTRESLNISWTRQDGE 1406
+ T N P V + P + L + L+CLV +E L + W + E
Sbjct: 273 TLTGTIAKVTVNTFPP-QVHLLPPPSEELALNELLSLTCLVRAFNPKEVL-VRWLHGNEE 330
Query: 1407 VLKTS-IVFSEIYANG----TFGARGEASVCVEDWESGDRFTCTVTHTDLPSPLKQ 1559
+ S +VF + G T+ V E W+ GD+++C V H LP Q
Sbjct: 331 LSPESYLVFEPLKEPGEGATTYLVTSVLRVSAETWKQGDQYSCMVGHEALPMNFTQ 386
>ref|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mus musculus].
Length = 349
Score = 120 bits (301), Expect = 4e-27
Identities = 91/299 (30%), Positives = 138/299 (46%), Gaps = 12/299 (4%)
Frame = +3
Query: 1017 CQASDFSPK-QISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 1193
C D+ P +++ W + GK + + V+ P +S Y + S LT+ E
Sbjct: 31 CLIHDYFPSGTMNVTWGKSGKDITT-VNFPPA---LASGGGYTMSSQLTLPAVECPEGES 86
Query: 1194 FTCQVEHKGLNYEKNASSLCTSNPNSPIT---------VFAIAPSFAGIFLTKSAKLSCL 1346
C V+H N + + C S P P T + P+ + L A ++C
Sbjct: 87 VKCSVQHDS-NAVQELNVKC-SGPPPPTTPPPPSCQPSLSLQRPALEDLLLGSDASITCT 144
Query: 1347 VTGLVTRESLNISWTRQDGE--VLKTSIVFSEIYANGTFGARGEASVCVEDWESGDRFTC 1520
+ GL E +W G+ V K ++ S G + C E W SG F C
Sbjct: 145 LNGLRNPEGAVFTWEPSTGKDAVQKKAVQNS----CGCYSVSSVLPGCAERWNSGASFKC 200
Query: 1521 TVTHTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFV 1700
TVTH + + L +++K + P V++LPP EEL+L E S+TCLV+ F+P +V V
Sbjct: 201 TVTHPESDT-LTGTIAKIT-VNTFPPQVHLLPPPSEELALNELVSLTCLVRAFNPKEVLV 258
Query: 1701 QWLQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEAL 1877
+WL E +S + Y+ +Y V SVL VSA+ W G+ Y+C+VGHEAL
Sbjct: 259 RWLHGNEELSPESYLV-FEPLKEPGEGATTYLVTSVLRVSAEIWKQGDQYSCMVGHEAL 316
Score = 82.4 bits (202), Expect = 1e-15
Identities = 87/336 (25%), Positives = 137/336 (40%), Gaps = 19/336 (5%)
Frame = +3
Query: 609 ESQSAPNLFPLVSCVSPPSDESLVALGCLARDFLPS-SVTFSWNYKNSSKVSSQNIQDFP 785
ES P ++PL + SD V +GCL D+ PS ++ +W K+ +++ N P
Sbjct: 6 ESARNPTIYPLTLPRALSSDP--VIIGCLIHDYFPSGTMNVTWG-KSGKDITTVNFP--P 60
Query: 786 SVLRGGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTK---SVSISGPVVEEQPPVLN 956
++ GG Y SS++ LP+V P+ + C VQH S +V SGP PP
Sbjct: 61 ALASGGGYTMSSQLTLPAVECPEGES--VKCSVQHDSNAVQELNVKCSGPPPPTTPPP-- 116
Query: 957 IFVPTRESFSSTPQRTSKLICQASDFS----------PKQISMAWFRDGKRVVSGVSTGP 1106
P+ + S + + + SD S P+ W +G
Sbjct: 117 ---PSCQPSLSLQRPALEDLLLGSDASITCTLNGLRNPEGAVFTW-----EPSTGKDAVQ 168
Query: 1107 VETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSLCTSNPNSPITVF 1286
+ +Q+S Y + S+L W S + F C V H + + T N P V
Sbjct: 169 KKAVQNSCGCYSVSSVLPGCAERWNSGASFKCTVTHPESDTLTGTIAKITVNTFPP-QVH 227
Query: 1287 AIAPSFAGIFLTKSAKLSCLVTGLVTRESLNISWTRQDGEVLKTS-IVFSEIYANG---- 1451
+ P + L + L+CLV +E L + W + E+ S +VF + G
Sbjct: 228 LLPPPSEELALNELVSLTCLVRAFNPKEVL-VRWLHGNEELSPESYLVFEPLKEPGEGAT 286
Query: 1452 TFGARGEASVCVEDWESGDRFTCTVTHTDLPSPLKQ 1559
T+ V E W+ GD+++C V H LP Q
Sbjct: 287 TYLVTSVLRVSAEIWKQGDQYSCMVGHEALPMNFTQ 322
>ref|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mus musculus].
Length = 209
Score = 55.8 bits (133), Expect = 1e-07
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Frame = +3
Query: 846 IPQDPEAFLVCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQA 1025
+P P+ + V GT+ + P + P++ +F+P+ ++ + + L+C
Sbjct: 84 LPSKPQFWYV----FGGGTQLTILGQP---KSDPLVTLFLPSLKNLQANK---ATLVCLV 133
Query: 1026 SDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVT---YRLHSMLTVTESEWLSQSVF 1196
S+F P + + W DG V GV ET Q S T Y + S LT+ +W+ S +
Sbjct: 134 SEFYPGTLVVDWKVDGVPVTQGV-----ETTQPSKQTNNKYMVSSYLTLISDQWMPHSRY 188
Query: 1197 TCQVEHKGLNYEKNAS 1244
+C+V H+G EK+ S
Sbjct: 189 SCRVTHEGNTVEKSVS 204
>ref|XP_923633.3| PREDICTED: tyrosine-protein phosphatase non-receptor type substrate
1-like [Mus musculus].
Length = 254
Score = 54.7 bits (130), Expect = 3e-07
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 3/187 (1%)
Frame = +3
Query: 669 ESLVALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGGKYLASSRVLLPSVSI 848
+ V C + F P ++T W +KN +++S P Y SS V + V
Sbjct: 36 QQTVTFACRSHGFFPQNLTLKW-FKNGNEISHLETSVEPEET-SVSYRVSSTVQV--VLE 91
Query: 849 PQDPEAFLVCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQ---RTSKLIC 1019
P+D + ++CEV H + ++ + E I VP S P +IC
Sbjct: 92 PRDVRSQIICEVAHVTLDRAPLRGIAHISEI-----IQVPPTLEISQQPTMVWNVINVIC 146
Query: 1020 QASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFT 1199
Q F P+++ + W +G V P + + TY S L V S V T
Sbjct: 147 QIQQFYPQRLQVTWLENGNISRREV---PFTHIINKDGTYNWISWLMVNISALEENMVVT 203
Query: 1200 CQVEHKG 1220
CQVEH G
Sbjct: 204 CQVEHDG 210
>ref|NP_808321.1| hypothetical protein LOC228592 [Mus musculus].
Length = 487
Score = 53.9 bits (128), Expect = 5e-07
Identities = 91/449 (20%), Positives = 174/449 (38%), Gaps = 22/449 (4%)
Frame = +3
Query: 591 VTGHQAESQSAPNLF-------PLVSCVSPP---SDESLVALGCLARDFLPSSVTFSWNY 740
VT + E+Q +F P ++ + P + S V C A F +++ +W
Sbjct: 13 VTDRETEAQKRRWIFLLLFVGKPFITLIGPDQRTTPSSSVFFLCTAAPFRSMNLSVNWLR 72
Query: 741 KNSSKVSSQ----NIQDFPSVLRGGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTKS 908
N+ +S ++ + LR ++ ++ QD + + CEV H +
Sbjct: 73 NNNEHPASTTHVVHVNNDSYSLRSKAWVTLTK---------QDISSQITCEVTHGDLKEP 123
Query: 909 V--SISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRV 1082
+ +I+ V P L I E Q+ + L C + F P+ + + W ++G ++
Sbjct: 124 LRMTINLSQVLRVIPTLKITTEDPEIQDHVHQKVN-LTCHVNHFYPQNMDLIWTKNGHKI 182
Query: 1083 VSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSLCTSN 1262
+ +T ++S TY L L V L+++ F C V KN+ +L
Sbjct: 183 PTMELP---QTTRNSDGTYSLQHTLQVDAI--LNKTDFVCWVIQDDQPPVKNSITLGAPR 237
Query: 1263 PNSPITVFA--IAPSFAGIFLTKSAKLSCLVTGLVTRESLNISWTRQDGEVLKTSIVFSE 1436
T ++ + S +L + L TR+ + ++W + + L+T +
Sbjct: 238 KIRGRTEYSHHLEGPLQRFPPGASIQLKYTSSALQTRQ-VTVTWLKNNHTRLQTQ---TN 293
Query: 1437 IYANG-TFGARGEASVCVEDWESGDRFTCTVTHTDLPSPLKQSVSKPRGIARHMPSVYVL 1613
+++NG T+ A V +E + C V H L K ++ +
Sbjct: 294 VFSNGETYNVTSTAIVSLESDDILSLVLCLVEHKSLVVFQK---------VIYLGQYLCV 344
Query: 1614 PPA---PEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXXXXX 1784
PPA + ++ +VTC V+ F P +V++ WL+ + + T
Sbjct: 345 PPAVRVSQSSTVSSLVTVTCHVQRFYPQEVYLSWLEDCHVIRRIEQPT------PKRNED 398
Query: 1785 XSYFVQSVLTVSAKDWSDGETYTCVVGHE 1871
SY ++ + V+ + TC V HE
Sbjct: 399 GSYTLEVLQLVNTSVERSDQVLTCKVEHE 427
>ref|NP_001166930.1| signal-regulatory protein beta 1-like [Mus musculus].
Length = 391
Score = 53.5 bits (127), Expect = 6e-07
Identities = 51/187 (27%), Positives = 74/187 (39%), Gaps = 3/187 (1%)
Frame = +3
Query: 669 ESLVALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGGKYLASSRVLLPSVSI 848
+ VA C + F P ++T W +KN +++S P Y SS V + V
Sbjct: 161 QQTVAFTCRSHGFFPRNLTLKW-FKNGNEISHLETSVEPEET-SVSYRVSSTVQV--VLE 216
Query: 849 PQDPEAFLVCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLI---C 1019
P+D + ++CEV H + ++ + E I VP S P +I C
Sbjct: 217 PRDVRSQIICEVDHVTLDRAPLRGIAHISEF-----IQVPPTLEISQQPTMVWNVIIVTC 271
Query: 1020 QASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFT 1199
Q F P + + W +G V P + + TY S L V S V T
Sbjct: 272 QIQKFYPPRFQVTWLENGNISRREV---PFTLIVNKDGTYNWISCLLVNISALEENMVVT 328
Query: 1200 CQVEHKG 1220
CQVEH G
Sbjct: 329 CQVEHDG 335
>ref|NP_001171117.1| tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1
[Mus musculus].
Length = 509
Score = 52.0 bits (123), Expect = 2e-06
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 9/197 (4%)
Frame = +3
Query: 651 VSPPSDESL----VALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGGKYLAS 818
VS P+D + V C + F P ++T W +K+ ++ PS ++S
Sbjct: 154 VSGPADRGIPDQKVNFTCKSHGFSPRNITLKW-FKDGQELHPLETTVNPSGKNVSYNISS 212
Query: 819 S-RVLLPSVSIPQDPEAFLVCEVQH----PSGTKSVSISGPVVEEQPPVLNIFVPTRESF 983
+ RV+L S+ D + ++CEV H S + ++ + P V T++S
Sbjct: 213 TVRVVLNSM----DVNSKVICEVAHITLDRSPLRGIANLSNFIRVSPTVK----VTQQSP 264
Query: 984 SSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTV 1163
+S Q L C+A F P+ + + W +G VS T P +++ TY S+ V
Sbjct: 265 TSMNQ--VNLTCRAERFYPEDLQLIWLENGN--VSRNDT-PKNLTKNTDGTYNYTSLFLV 319
Query: 1164 TESEWLSQSVFTCQVEH 1214
S VFTCQV+H
Sbjct: 320 NSSAHREDVVFTCQVKH 336
>ref|NP_031573.2| tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1
[Mus musculus].
Length = 509
Score = 52.0 bits (123), Expect = 2e-06
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 9/197 (4%)
Frame = +3
Query: 651 VSPPSDESL----VALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGGKYLAS 818
VS P+D + V C + F P ++T W +K+ ++ PS ++S
Sbjct: 154 VSGPADRGIPDQKVNFTCKSHGFSPRNITLKW-FKDGQELHPLETTVNPSGKNVSYNISS 212
Query: 819 S-RVLLPSVSIPQDPEAFLVCEVQH----PSGTKSVSISGPVVEEQPPVLNIFVPTRESF 983
+ RV+L S+ D + ++CEV H S + ++ + P V T++S
Sbjct: 213 TVRVVLNSM----DVNSKVICEVAHITLDRSPLRGIANLSNFIRVSPTVK----VTQQSP 264
Query: 984 SSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTV 1163
+S Q L C+A F P+ + + W +G VS T P +++ TY S+ V
Sbjct: 265 TSMNQ--VNLTCRAERFYPEDLQLIWLENGN--VSRNDT-PKNLTKNTDGTYNYTSLFLV 319
Query: 1164 TESEWLSQSVFTCQVEH 1214
S VFTCQV+H
Sbjct: 320 NSSAHREDVVFTCQVKH 336
>ref|NP_001166931.1| signal-regulatory protein beta 1B [Mus musculus].
Length = 391
Score = 51.6 bits (122), Expect = 2e-06
Identities = 50/184 (27%), Positives = 72/184 (39%), Gaps = 3/184 (1%)
Frame = +3
Query: 678 VALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGGKYLASSRVLLPSVSIPQD 857
V C + F P ++T W +KN +++S P Y SS V + V P+D
Sbjct: 164 VTFTCRSHGFFPRNLTLKW-FKNGNEISHLETSVEPEET-SVSYRVSSTVQV--VLEPRD 219
Query: 858 PEAFLVCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLI---CQAS 1028
+ ++CEV H + ++ + E I VP S P +I CQ
Sbjct: 220 VRSQIICEVDHVTLDRAPLRGIAHISEF-----IQVPPTLEISQQPTMVWNVIIVTCQIQ 274
Query: 1029 DFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQV 1208
F P + + W +G V P + + TY S L V S V TCQV
Sbjct: 275 KFYPPRFQVTWLENGNISRREV---PFTLIVNKDGTYNWISCLLVNISALEENMVVTCQV 331
Query: 1209 EHKG 1220
EH G
Sbjct: 332 EHDG 335
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 60,562,529
Number of extensions: 1819787
Number of successful extensions: 9962
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 9712
Number of HSP's successfully gapped: 13
Length of query: 673
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 565
Effective length of database: 12,373,671
Effective search space: 6991124115
Effective search space used: 6991124115
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000582
(2019 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998993.1| IgG heavy chain [Sus scrofa]. 132 5e-31
Alignment gi|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Su... 64 3e-10
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 62 2e-09
Alignment gi|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polype... 61 3e-09
Alignment gi|XP_003360139.1| PREDICTED: t-cell receptor beta chain T17T-2... 57 4e-08
Alignment gi|XP_003359980.1| PREDICTED: tyrosine-protein phosphatase non-... 56 7e-08
Alignment gi|NP_001107166.1| SLA class II histocompatibility antigen, DQ ... 49 8e-06
>ref|NP_998993.1| IgG heavy chain [Sus scrofa].
Length = 474
Score = 132 bits (333), Expect = 5e-31
Identities = 101/328 (30%), Positives = 146/328 (44%), Gaps = 11/328 (3%)
Frame = +3
Query: 927 VVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGP 1106
VV P P T L C AS + P+ ++M W + + SGV T P
Sbjct: 143 VVSSAPKTAPSVYPLAPCGRDTSGPNVALGCLASSYFPEPVTMTW--NSGALTSGVHTFP 200
Query: 1107 VETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSLCTSNPNSPI--- 1277
LQ S + Y L SM+TV S LS +TC V H + + + P PI
Sbjct: 201 -SVLQPSGL-YSLSSMVTVPASS-LSSKSYTCNVNHPATTTKVDKRVGTKTKPPCPICPG 257
Query: 1278 ------TVFAIAPSFAG-IFLTKSAKLSCLVTGLVTRES-LNISWTRQDGEVLKTSIVFS 1433
+VF P + ++++ +++C+V + + + SW EV
Sbjct: 258 CEVAGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPK 317
Query: 1434 EIYANGTFGARGEASVCVEDWESGDRFTCTVTHTDLPSPLKQSVSKPRGIARHMPSVYVL 1613
E N T+ + +DW G F C V + DLP+P+ +++SK G +R P VY L
Sbjct: 318 EEQFNSTYRVVSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQSRE-PQVYTL 376
Query: 1614 PPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXXXXXXSY 1793
PP EELS + +VTCLV GF P D+ V+W G+P Y T+ ++
Sbjct: 377 PPPAEELSRSK-VTVTCLVIGFYPPDIHVEWKSNGQPEPEGNYRTT----PPQQDVDGTF 431
Query: 1794 FVQSVLTVSAKDWSDGETYTCVVGHEAL 1877
F+ S L V W GET+ C V HEAL
Sbjct: 432 FLYSKLAVDKARWDHGETFECAVMHEAL 459
Score = 96.7 bits (239), Expect = 4e-20
Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 21/343 (6%)
Frame = +3
Query: 615 QSAPNLFPLVSCVSPPSDESLVALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVL 794
++AP+++PL C S + VALGCLA + P VT +WN S + + FPSVL
Sbjct: 149 KTAPSVYPLAPCGRDTSGPN-VALGCLASSYFPEPVTMTWN----SGALTSGVHTFPSVL 203
Query: 795 R-GGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTKSVSIS-----------GPVVEE 938
+ G Y SS V +P+ S+ C V HP+ T V P E
Sbjct: 204 QPSGLYSLSSMVTVPASSLSSKS---YTCNVNHPATTTKVDKRVGTKTKPPCPICPGCEV 260
Query: 939 QPPVLNIFVPTRES---FSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPV 1109
P + IF P + S TP+ T ++ + + + ++ +W+ DG V + +
Sbjct: 261 AGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHA--EVQFSWYVDGVEVHTAETRPKE 318
Query: 1110 ETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSLCTSNPNSPITVFA 1289
E S TYR+ S+L + +WL F C+V + L + + V+
Sbjct: 319 EQFNS---TYRVVSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQSREPQVYT 375
Query: 1290 IAPSFAGIFLTKSAKLSCLVTGLVTRESLNISWTRQDGEV-----LKTSIVFSEIYANGT 1454
+ P + +K ++CLV G + +++ W + +G+ +T+ ++ +GT
Sbjct: 376 LPPPAEELSRSK-VTVTCLVIGFYPPD-IHVEW-KSNGQPEPEGNYRTTPPQQDV--DGT 430
Query: 1455 FGARGEASVCVEDWESGDRFTCTVTHTDLPSPLKQ-SVSKPRG 1580
F + +V W+ G+ F C V H L + Q S+SK +G
Sbjct: 431 FFLYSKLAVDKARWDHGETFECAVMHEALHNHYTQKSISKTQG 473
>ref|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Sus scrofa].
Length = 234
Score = 63.9 bits (154), Expect = 3e-10
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Frame = +3
Query: 810 LASSRVLLPSVSIPQDPEAFLVCEVQHPSGTKSVSISGPV-VEEQP---PVLNIFVPTRE 977
++ ++ L + EA C ++ GT + V V QP P +N+F P+ E
Sbjct: 86 ISGNKATLTITGAQAEDEADYFCALRKSGGTVTFGGGTHVTVLGQPKAAPTVNLFPPSSE 145
Query: 978 SFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSML 1157
+ + L+C SDF P +++ W G V GV T + + S Y S L
Sbjct: 146 ELGTNK---ATLVCLISDFYPGAVTVTWKAGGTTVTQGVET--TKPSKQSNNKYAASSYL 200
Query: 1158 TVTESEWLSQSVFTCQVEHKGLNYEKNAS 1244
++ S+W S S FTCQV H+G EK +
Sbjct: 201 ALSASDWKSSSGFTCQVTHEGTIVEKTVT 229
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/98 (31%), Positives = 42/98 (42%)
Frame = +3
Query: 1578 GIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXX 1757
G + P+V + PP+ EEL + A++ CL+ F P V V W G V+ T
Sbjct: 129 GQPKAAPTVNLFPPSSEELGTNK-ATLVCLISDFYPGAVTVTWKAGGTTVTQGVETTKPS 187
Query: 1758 XXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHE 1871
Y S L +SA DW +TC V HE
Sbjct: 188 KQSNN-----KYAASSYLALSASDWKSSSGFTCQVTHE 220
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 61.6 bits (148), Expect = 2e-09
Identities = 34/100 (34%), Positives = 50/100 (50%)
Frame = +3
Query: 945 PVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQS 1124
P +N+F P+ E + + L+C SDF P +++ W G V GV T + +
Sbjct: 134 PTVNLFPPSSEELGTNK---ATLVCLISDFYPGAVTVTWKAGGTTVTQGVET--TKPSKQ 188
Query: 1125 SPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS 1244
S Y S L ++ S+W S S FTCQV H+G EK +
Sbjct: 189 SNNKYAASSYLALSASDWKSSSGFTCQVTHEGTIVEKTVT 228
Score = 50.4 bits (119), Expect = 4e-06
Identities = 30/92 (32%), Positives = 40/92 (43%)
Frame = +3
Query: 1596 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1775
P+V + PP+ EEL + A++ CL+ F P V V W G V+ T
Sbjct: 134 PTVNLFPPSSEELGTNK-ATLVCLISDFYPGAVTVTWKAGGTTVTQGVETTKPSKQSNN- 191
Query: 1776 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHE 1871
Y S L +SA DW +TC V HE
Sbjct: 192 ----KYAASSYLALSASDWKSSSGFTCQVTHE 219
>ref|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 211
Score = 60.8 bits (146), Expect = 3e-09
Identities = 36/113 (31%), Positives = 55/113 (48%)
Frame = +3
Query: 897 GTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGK 1076
GT+ + P + P + +F P+ E S+ + L+C SDF P +++ W G
Sbjct: 99 GTRLTVLGQP---KAAPTVTLFPPSPEELSTNK---ATLVCLISDFYPGAVTVTWKAGGT 152
Query: 1077 RVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEK 1235
+ GV T + + S Y S L ++ S+W S S FTCQV H+G EK
Sbjct: 153 TITQGVDTS--QPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHQGNTVEK 203
Score = 52.0 bits (123), Expect = 1e-06
Identities = 30/98 (30%), Positives = 44/98 (44%)
Frame = +3
Query: 1578 GIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXX 1757
G + P+V + PP+PEELS + A++ CL+ F P V V W G ++ +
Sbjct: 106 GQPKAAPTVTLFPPSPEELSTNK-ATLVCLISDFYPGAVTVTWKAGGTTITQGVDTSQPS 164
Query: 1758 XXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHE 1871
Y S L +SA DW +TC V H+
Sbjct: 165 KQSNN-----KYAASSYLALSASDWKSSSGFTCQVTHQ 197
>ref|XP_003360139.1| PREDICTED: t-cell receptor beta chain T17T-22-like [Sus scrofa].
Length = 308
Score = 57.0 bits (136), Expect = 4e-08
Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 9/199 (4%)
Frame = +3
Query: 693 LARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGGKYLASSRVLLPSVSIPQDPEAFL 872
+A + S+ T+ Y ++ + S + F S++ + A S + + +
Sbjct: 62 IATSDVGSNATYEKGYNSAKFLISHPDETFSSLVVRSVHPADSSLYFCGARDSKGTDPLY 121
Query: 873 VCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQIS 1052
E GT+ +++ + + +PP + +F P+ S T + T L+C A+ F P +
Sbjct: 122 FGE-----GTR-LTVLEDLQQVRPPKVAVFEPSEAEISRTQKAT--LVCLATGFYPDHVE 173
Query: 1053 MAWFRDGKRVVSGVSTGPVETLQSSP----VTYRLHSMLTVTESEWLS-QSVFTCQVEHK 1217
++W+ +GK+V SGVST ++ + P +Y L S L VT + W + ++ F CQV+
Sbjct: 174 LSWWVNGKQVQSGVST-DLQPYREDPSRNDSSYCLSSRLRVTAAFWHNPRNHFRCQVQFY 232
Query: 1218 GL----NYEKNASSLCTSN 1262
GL +E N + T N
Sbjct: 233 GLTEDDEWEYNWTKPITQN 251
>ref|XP_003359980.1| PREDICTED: tyrosine-protein phosphatase non-receptor type substrate
1-like [Sus scrofa].
Length = 323
Score = 56.2 bits (134), Expect = 7e-08
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 6/201 (2%)
Frame = +3
Query: 636 PLVSCVSPPSDESLVA----LGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGG 803
P + + P +++L+ C++ F P ++T W +KN ++SS +Q L+
Sbjct: 115 PSLPVIIGPLEKALIGQAVNFSCISYGFFPENITLKW-FKNGKEISS--LQTHVVKLKES 171
Query: 804 KYLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESF 983
S +S+ QD A++ C+V H +S+ P+ + VP S
Sbjct: 172 NVYKISSTTEVVLSL-QDFYAYITCDVNH------LSLHYPLQGTADLSKTMLVPPTMSI 224
Query: 984 SSTPQRTSKL--ICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSML 1157
P +K+ C+A F PK I + W ++G VS + T + + Y + S +
Sbjct: 225 FEHPVSKNKINVTCKAKKFYPKGIWLTWLKNGN--VSRIDKTLTPTKRRDGL-YTVQSSI 281
Query: 1158 TVTESEWLSQSVFTCQVEHKG 1220
V + + +V TCQ E G
Sbjct: 282 LVNKPHEIEDTVLTCQAEQDG 302
>ref|NP_001107166.1| SLA class II histocompatibility antigen, DQ haplotype C beta chain
precursor [Sus scrofa].
Length = 261
Score = 49.3 bits (116), Expect = 8e-06
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +3
Query: 1011 LICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQS 1190
L+C +DF P Q+ + WFR+G+ +GV + P+ +++ TY+ +L + E
Sbjct: 147 LVCAVTDFYPSQVKVQWFRNGQEETAGVVSTPL--IRNGDWTYQ---VLVMLEMNLQRGD 201
Query: 1191 VFTCQVEHKGL 1223
V+TC+VEH L
Sbjct: 202 VYTCRVEHSSL 212
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,905,465
Number of extensions: 1443630
Number of successful extensions: 8775
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 8482
Number of HSP's successfully gapped: 11
Length of query: 673
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 567
Effective length of database: 8,704,850
Effective search space: 4935649950
Effective search space used: 4935649950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000582
(2019 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895479.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1007 0.0
gb|GL894379.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 585 e-164
gb|GL896198.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 145 1e-31
gb|GL895656.1| Sus scrofa unplaced genomic scaffold chrU_scaffold42 90 6e-15
gb|GL896545.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 74 3e-10
>gb|GL895479.1| Sus scrofa unplaced genomic scaffold chrU_scaffold404
Length = 1139
Score = 1007 bits (508), Expect = 0.0
Identities = 520/524 (99%)
Strand = Plus / Minus
Query: 86 gtttaagagccgaggcattcctatcctcttctaaggcgttattcctggaggctcattcac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 gtttaagagccgaggcattcctatcctcttctaaggcgttattcctggaggctcattcac 1080
Query: 146 cgccagcacctccgctgcccgcaggcattgctgtcaccgccaccgtgacggcgcacacga 205
||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||
Sbjct: 1079 cgccagcacctccgctgcctgcaggcattgctgtcaccgtcaccgtgacggcgcgcacga 1020
Query: 206 ttttcagttggcccgcttcccctcgtgattaggacagacgcgggcactctggcccagccg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 ttttcagttggcccgcttcccctcgtgattaggacagacgcgggcactctggcccagccg 960
Query: 266 tcttggctcagtatctgcaggcgtccgtctcgggacggagctcaggggaagagcgtgact 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 tcttggctcagtatctgcaggcgtccgtctcgggacggagctcaggggaagagcgtgact 900
Query: 326 ccagttgaacgtgatagtcggtgcgttgagaggagacccagtcgggtgtcgagtcagaag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 ccagttgaacgtgatagtcggtgcgttgagaggagacccagtcgggtgtcgagtcagaag 840
Query: 386 gggcccggggcccgaggccctgggcaggacggcccgtgccctgcatcacgggcccagcgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gggcccggggcccgaggccctgggcaggacggcccgtgccctgcatcacgggcccagcgt 780
Query: 446 cctagaggcaggactctggtggagagtgtgagggtgcctggggcccctccggagctgggg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 cctagaggcaggactctggtggagagtgtgagggtgcctggggcccctccggagctgggg 720
Query: 506 ccgtgcggtgcaggttgggctctcggcgtggtgttggctgtttctgcgggatttggagga 565
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 719 ccgtgcggtgcaggttgggctctcggcgcggtgttggctgtttctgcgggatttggagga 660
Query: 566 attcttccagtgatgggagtcgccagtgaccgggcaccaggctg 609
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 attcttccagtgatgggagtcgccagtgaccgggcaccaggctg 616
>gb|GL894379.1| Sus scrofa unplaced genomic scaffold chrU_scaffold305
Length = 460
Score = 585 bits (295), Expect = e-164
Identities = 298/299 (99%)
Strand = Plus / Minus
Query: 629 tctcttccccctcgtctcctgcgtcagccccccgtccgatgagagcctggtggccctggg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tctcttccccctcgtctcctgcgtcagccccccgtccgatgagagcctggtggccctggg 401
Query: 689 ctgcctggcccgggacttcttgcccagctccgtcaccttctcctggaactacaagaacag 748
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctgcctggcccgggacttcctgcccagctccgtcaccttctcctggaactacaagaacag 341
Query: 749 cagcaaggtcagcagccagaacatccaggacttcccgtccgtcctgagaggcggcaagta 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cagcaaggtcagcagccagaacatccaggacttcccgtccgtcctgagaggcggcaagta 281
Query: 809 cttggcctcctcccgggtgctcctaccctctgtgagcatcccccaggacccagaggcctt 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cttggcctcctcccgggtgctcctaccctctgtgagcatcccccaggacccagaggcctt 221
Query: 869 cctggtgtgcgaggtccagcaccccagtggcaccaagtccgtgtccatctctgggccag 927
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 cctggtgtgcgaggtccagcaccccagtggcaccaagtccgtgtccatctctgggccag 162
Score = 163 bits (82), Expect = 5e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 925 cagtcgtagaggagcagccccccgtcttgaacatcttcgtccccacccgggagtccttct 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 cagtcgtagaggagcagccccccgtcttgaacatcttcgtccccacccgggagtccttct 23
Query: 985 ccagtactccccagcgcacgtc 1006
||||||||||||||||||||||
Sbjct: 22 ccagtactccccagcgcacgtc 1
>gb|GL896198.1| Sus scrofa unplaced genomic scaffold chrU_scaffold562
Length = 35518
Score = 145 bits (73), Expect = 1e-31
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 26 gaattgagttttcggtcttagcttatcaactgctcacttagattcattttcaaagtaaac 85
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaattgaattttcagtcttagcttatcaactgctcacttagattcattttcaaagtaaat 770
Query: 86 gtttaagagccgaggcattcctatc 110
|||||||||||||||||||||||||
Sbjct: 771 gtttaagagccgaggcattcctatc 795
>gb|GL895656.1| Sus scrofa unplaced genomic scaffold chrU_scaffold42
Length = 116
Score = 89.7 bits (45), Expect = 6e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 609 gagagccagtctgccccgaatctcttccccctcgtctcctgcgtc 653
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 gagagccagtctgccccgaatctcttccccctcgtctcctgcgtc 116
>gb|GL896545.1| Sus scrofa unplaced genomic scaffold chrU_scaffold875
Length = 2000
Score = 73.8 bits (37), Expect = 3e-10
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 613 gccagtctgccccgaatctcttccccctcgtctcctgcgtc 653
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 41 gccagtctgccccgagtctcttccccctcgtctcctgcgtc 1
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,903,921
Number of extensions: 259
Number of successful extensions: 259
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 6
Length of query: 2019
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1997
Effective length of database: 2,808,408,574
Effective search space: 5608391922278
Effective search space used: 5608391922278
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)