Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000599
(813 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_786970.1| translocator protein [Bos taurus]. 208 5e-54
Alignment gi|XP_002683930.1| PREDICTED: GF15022-like, partial [Bos taurus]. 58 8e-09
>ref|NP_786970.1| translocator protein [Bos taurus].
Length = 169
Score = 208 bits (529), Expect = 5e-54
Identities = 96/151 (63%), Positives = 104/151 (68%)
Frame = +2
Query: 89 VGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIW 268
VGFTL+PSLGGFL ++ G+G WYA LQKP WHPP W LAPIWGTLYSAMGYGSYMIW
Sbjct: 9 VGFTLLPSLGGFLGAQYTRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSYMIW 68
Query: 269 KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQ 448
KELGGFS+EAVVPLGLYAGQLALNWAWPPLFFG RQMGW W+Q
Sbjct: 69 KELGGFSKEAVVPLGLYAGQLALNWAWPPLFFGTRQMGWALVDLLLTGGMAAATAMAWHQ 128
Query: 449 VSXXXXXXXXXXXXXXXFAATLNYCVWRDNQ 541
VS FA LNY +W+DNQ
Sbjct: 129 VSPPAACLLYPYLAWLAFAGMLNYRMWQDNQ 159
>ref|XP_002683930.1| PREDICTED: GF15022-like, partial [Bos taurus].
Length = 156
Score = 58.2 bits (139), Expect = 8e-09
Identities = 35/124 (28%), Positives = 51/124 (41%)
Frame = +2
Query: 161 WYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIWKELGGFSEEAVVPLGLYAGQLALN 340
+YA L P+W PP P+W LY+ M ++++W+E G A L LY QLA+N
Sbjct: 34 FYASLALPAWAPPASVFGPVWTLLYAMMAVAAWLVWRERGW--RGARPALLLYLVQLAVN 91
Query: 341 WAWPPLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQVSXXXXXXXXXXXXXXXFAATLNY 520
W LFFG + + ++ FA+ LN+
Sbjct: 92 ALWSWLFFGWKLGALAFADILVLIVLVCATIVTFARIRRLAAVLLLPYLAWISFASALNF 151
Query: 521 CVWR 532
VWR
Sbjct: 152 AVWR 155
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,046,221
Number of extensions: 950028
Number of successful extensions: 5167
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5155
Number of HSP's successfully gapped: 2
Length of query: 271
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 170
Effective length of database: 14,339,486
Effective search space: 2437712620
Effective search space used: 2437712620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000599
(813 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531704.2| PREDICTED: similar to Peripheral-type benzodiaz... 224 1e-58
Alignment gi|XP_538908.2| PREDICTED: similar to benzodiazapine receptor (... 92 7e-19
>ref|XP_531704.2| PREDICTED: similar to Peripheral-type benzodiazepine receptor (PBR)
(PKBS) (Mitochondrial benzodiazepine receptor) [Canis
familiaris].
Length = 169
Score = 224 bits (570), Expect = 1e-58
Identities = 104/151 (68%), Positives = 108/151 (71%)
Frame = +2
Query: 89 VGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIW 268
VGFTLVPSLGGFL S V G+GL WYA LQKPSWHPP WTL PIWGTLYSAMGYGSYM+W
Sbjct: 9 VGFTLVPSLGGFLGSYYVRGEGLRWYASLQKPSWHPPRWTLGPIWGTLYSAMGYGSYMVW 68
Query: 269 KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQ 448
KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFG RQMGW W++
Sbjct: 69 KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGTRQMGWALVDLLLTGGLAGATAVAWHR 128
Query: 449 VSXXXXXXXXXXXXXXXFAATLNYCVWRDNQ 541
VS FAA LNYCVWRDNQ
Sbjct: 129 VSPPAARLLYPYLAWLAFAAALNYCVWRDNQ 159
>ref|XP_538908.2| PREDICTED: similar to benzodiazapine receptor (peripheral)-like 1
[Canis familiaris].
Length = 214
Score = 91.7 bits (226), Expect = 7e-19
Identities = 50/149 (33%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Frame = +2
Query: 95 FTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIWKE 274
F +P LG L S + + WY +KP W PPH L W T+Y MGY SY++WK+
Sbjct: 50 FVALPHLGPILVSLLTRHRMIRWYDIPKKPPWCPPHKVLLAGWITIYFVMGYASYLVWKD 109
Query: 275 L-GGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQV 451
L GGF +PLGLYA QLA++WA FF A G W+ +
Sbjct: 110 LGGGFGRPLALPLGLYAVQLAVSWAVLIFFFAAHAHGLALLHMLLLYGLVVSTALIWHPI 169
Query: 452 SXXXXXXXXXXXXXXXFAATLNYCVWRDN 538
+ A++ Y +WRD+
Sbjct: 170 NKLAAVLLLPYLAWLTVTASIAYHLWRDS 198
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,322,961
Number of extensions: 976995
Number of successful extensions: 5177
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5161
Number of HSP's successfully gapped: 2
Length of query: 271
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 170
Effective length of database: 15,507,568
Effective search space: 2636286560
Effective search space used: 2636286560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000599
(813 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000705.2| translocator protein isoform PBR [Homo sapiens]. 217 9e-57
Alignment gi|NP_001153198.1| translocator protein 2 [Homo sapiens]. 70 3e-12
Alignment gi|NP_001010873.1| translocator protein 2 [Homo sapiens]. 70 3e-12
Alignment gi|NP_009295.2| translocator protein isoform PBR-S [Homo sapien... 54 1e-07
>ref|NP_000705.2| translocator protein isoform PBR [Homo sapiens].
Length = 169
Score = 217 bits (553), Expect = 9e-57
Identities = 97/150 (64%), Positives = 106/150 (70%)
Frame = +2
Query: 89 VGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIW 268
+GFTL PSLG F+ SR V G+GL WYAGLQKPSWHPPHW L P+WGTLYSAMGYGSY++W
Sbjct: 9 MGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVW 68
Query: 269 KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQ 448
KELGGF+E+AVVPLGLY GQLALNWAWPP+FFGARQMGW WYQ
Sbjct: 69 KELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQ 128
Query: 449 VSXXXXXXXXXXXXXXXFAATLNYCVWRDN 538
VS F TLNYCVWRDN
Sbjct: 129 VSPLAARLLYPYLAWLAFTTTLNYCVWRDN 158
>ref|NP_001153198.1| translocator protein 2 [Homo sapiens].
Length = 170
Score = 69.7 bits (169), Expect = 3e-12
Identities = 44/160 (27%), Positives = 63/160 (39%), Gaps = 1/160 (0%)
Frame = +2
Query: 95 FTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIWKE 274
F L+P LG L W G + SW P + L + +YS +GY SY++WK+
Sbjct: 8 FVLLPHLGPILVWLFTRDHMSGWCEGPRMLSWCPFYKVLLLVQTAIYSVVGYASYLVWKD 67
Query: 275 L-GGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQV 451
L GG +PLGLYA QL ++W LFF G W+ +
Sbjct: 68 LGGGLGWPLALPLGLYAVQLTISWTVLVLFFTVHNPGLALLHLLLLYGLVVSTALIWHPI 127
Query: 452 SXXXXXXXXXXXXXXXFAATLNYCVWRDNQXXXXXXXPSE 571
+ + L Y +WRD+ P+E
Sbjct: 128 NKLAALLLLPYLAWLTVTSALTYHLWRDSLCPVHQPQPTE 167
>ref|NP_001010873.1| translocator protein 2 [Homo sapiens].
Length = 170
Score = 69.7 bits (169), Expect = 3e-12
Identities = 44/160 (27%), Positives = 63/160 (39%), Gaps = 1/160 (0%)
Frame = +2
Query: 95 FTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIWKE 274
F L+P LG L W G + SW P + L + +YS +GY SY++WK+
Sbjct: 8 FVLLPHLGPILVWLFTRDHMSGWCEGPRMLSWCPFYKVLLLVQTAIYSVVGYASYLVWKD 67
Query: 275 L-GGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQV 451
L GG +PLGLYA QL ++W LFF G W+ +
Sbjct: 68 LGGGLGWPLALPLGLYAVQLTISWTVLVLFFTVHNPGLALLHLLLLYGLVVSTALIWHPI 127
Query: 452 SXXXXXXXXXXXXXXXFAATLNYCVWRDNQXXXXXXXPSE 571
+ + L Y +WRD+ P+E
Sbjct: 128 NKLAALLLLPYLAWLTVTSALTYHLWRDSLCPVHQPQPTE 167
>ref|NP_009295.2| translocator protein isoform PBR-S [Homo sapiens].
Length = 102
Score = 54.3 bits (129), Expect = 1e-07
Identities = 29/61 (47%), Positives = 31/61 (50%)
Frame = +1
Query: 346 MASPLLWRPTNGLGPGGPRADGWTGSSHGSGLVSGEPSXXXXXXXXXXXXXXXXHAQLLR 525
MA LLW PTNGLG GG A W G SH GLV GEP+ H QLLR
Sbjct: 1 MAPHLLWCPTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAGLHDHTQLLR 60
Query: 526 V 528
+
Sbjct: 61 M 61
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,585,956
Number of extensions: 952589
Number of successful extensions: 4887
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4869
Number of HSP's successfully gapped: 4
Length of query: 271
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 170
Effective length of database: 14,967,800
Effective search space: 2544526000
Effective search space used: 2544526000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000599
(813 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033905.3| translocator protein [Mus musculus]. 207 8e-54
Alignment gi|NP_081568.1| translocator protein 2 [Mus musculus]. 78 9e-15
>ref|NP_033905.3| translocator protein [Mus musculus].
Length = 169
Score = 207 bits (527), Expect = 8e-54
Identities = 94/150 (62%), Positives = 105/150 (70%)
Frame = +2
Query: 89 VGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIW 268
VG TLVPSLGGF+ + V G+GL WYA LQKPSWHPP WTLAPIWGTLYSAMGYGSY++W
Sbjct: 9 VGLTLVPSLGGFMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIVW 68
Query: 269 KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQ 448
KELGGF+E+A+VPLGLY GQLALNWAWPP+FFGARQMGW W++
Sbjct: 69 KELGGFTEDAMVPLGLYTGQLALNWAWPPIFFGARQMGWALADLLLVSGVATATTLAWHR 128
Query: 449 VSXXXXXXXXXXXXXXXFAATLNYCVWRDN 538
VS FA LNY VWRDN
Sbjct: 129 VSPPAARLLYPYLAWLAFATVLNYYVWRDN 158
>ref|NP_081568.1| translocator protein 2 [Mus musculus].
Length = 162
Score = 77.8 bits (190), Expect = 9e-15
Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Frame = +2
Query: 176 QKPSWHPPHWTLAPIWGTLYSAMGYGSYMIWKEL-GGFSEEAVVPLGLYAGQLALNWAWP 352
+K W PPH + +W T+YS MGY SY++WKEL GGF +PLGLY+ QLAL+W +
Sbjct: 34 RKLPWCPPHKVILLVWVTIYSVMGYASYLVWKELGGGFRWPLALPLGLYSFQLALSWTFL 93
Query: 353 PLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQVSXXXXXXXXXXXXXXXFAATLNYCVWR 532
LF A G W ++ + Y +WR
Sbjct: 94 VLFLAADSPGLALLDLLLLYGLVASLVFIWQPINKLAALLLLPYLAWLTVTTAITYRLWR 153
Query: 533 DN 538
D+
Sbjct: 154 DS 155
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,327,726
Number of extensions: 779946
Number of successful extensions: 4018
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4000
Number of HSP's successfully gapped: 2
Length of query: 271
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 171
Effective length of database: 12,613,959
Effective search space: 2156986989
Effective search space used: 2156986989
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000599
(813 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355363.1| PREDICTED: translocator protein-like isoform... 256 1e-68
Alignment gi|NP_998918.1| translocator protein [Sus scrofa]. 256 1e-68
Alignment gi|XP_003355364.1| PREDICTED: translocator protein-like isoform... 175 2e-44
Alignment gi|XP_001925062.1| PREDICTED: translocator protein 2-like [Sus ... 80 1e-15
Alignment gi|XP_001928856.1| PREDICTED: translocator protein 2-like [Sus ... 80 1e-15
>ref|XP_003355363.1| PREDICTED: translocator protein-like isoform 1 [Sus scrofa].
Length = 169
Score = 256 bits (653), Expect = 1e-68
Identities = 121/161 (75%), Positives = 121/161 (75%)
Frame = +2
Query: 89 VGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIW 268
VGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIW
Sbjct: 9 VGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIW 68
Query: 269 KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQ 448
KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGW WYQ
Sbjct: 69 KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWALVDLVLTGGLAAATAVAWYQ 128
Query: 449 VSXXXXXXXXXXXXXXXFAATLNYCVWRDNQXXXXXXXPSE 571
VS FAATLNYCVWRDNQ PSE
Sbjct: 129 VSPLAARLLYPYLAWLAFAATLNYCVWRDNQGRRGGRRPSE 169
>ref|NP_998918.1| translocator protein [Sus scrofa].
Length = 169
Score = 256 bits (653), Expect = 1e-68
Identities = 121/161 (75%), Positives = 121/161 (75%)
Frame = +2
Query: 89 VGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIW 268
VGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIW
Sbjct: 9 VGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIW 68
Query: 269 KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQ 448
KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGW WYQ
Sbjct: 69 KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWALVDLVLTGGVAAATAVAWYQ 128
Query: 449 VSXXXXXXXXXXXXXXXFAATLNYCVWRDNQXXXXXXXPSE 571
VS FAATLNYCVWRDNQ PSE
Sbjct: 129 VSPLAARLLYPYLAWLAFAATLNYCVWRDNQGRRGGRRPSE 169
>ref|XP_003355364.1| PREDICTED: translocator protein-like isoform 2 [Sus scrofa].
Length = 141
Score = 175 bits (444), Expect = 2e-44
Identities = 93/161 (57%), Positives = 93/161 (57%)
Frame = +2
Query: 89 VGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIW 268
VGFTLVPSLGGFLSSRNVLGKGLHWY GSYMIW
Sbjct: 9 VGFTLVPSLGGFLSSRNVLGKGLHWY----------------------------GSYMIW 40
Query: 269 KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQ 448
KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGW WYQ
Sbjct: 41 KELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWALVDLVLTGGLAAATAVAWYQ 100
Query: 449 VSXXXXXXXXXXXXXXXFAATLNYCVWRDNQXXXXXXXPSE 571
VS FAATLNYCVWRDNQ PSE
Sbjct: 101 VSPLAARLLYPYLAWLAFAATLNYCVWRDNQGRRGGRRPSE 141
>ref|XP_001925062.1| PREDICTED: translocator protein 2-like [Sus scrofa].
Length = 171
Score = 80.5 bits (197), Expect = 1e-15
Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Frame = +2
Query: 101 LVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIWKEL- 277
L P+L L+ R + G W L+KP W+P H L +W YS GY SY++WKEL
Sbjct: 14 LGPTLVWLLTHRWMSG----WCNNLRKPPWYPSHRALLLVWTAFYSLTGYASYLVWKELG 69
Query: 278 GGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQVSX 457
GG +PLGLY+ QLA++W LFF A G W+ ++
Sbjct: 70 GGLGWPLALPLGLYSVQLAVSWTVLILFFVAHSAGLALLHLLLLFGLVVSMALIWHPINK 129
Query: 458 XXXXXXXXXXXXXXFAATLNYCVWRDN 538
++ Y +WRD+
Sbjct: 130 LAALLLLPYLAWLTVTTSITYRLWRDS 156
>ref|XP_001928856.1| PREDICTED: translocator protein 2-like [Sus scrofa].
Length = 171
Score = 80.5 bits (197), Expect = 1e-15
Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Frame = +2
Query: 101 LVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIWKEL- 277
L P+L L+ R + G W L+KP W+P H L +W YS GY SY++WKEL
Sbjct: 14 LGPTLVWLLTHRWMSG----WCNNLRKPPWYPSHRALLLVWTAFYSLTGYASYLVWKELG 69
Query: 278 GGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWXXXXXXXXXXXXXXXXXXWYQVSX 457
GG +PLGLY+ QLA++W LFF A G W+ ++
Sbjct: 70 GGLGWPLALPLGLYSVQLAVSWTVLILFFVAHSAGLALLHLLLLFGLVVSMALIWHPINK 129
Query: 458 XXXXXXXXXXXXXXFAATLNYCVWRDN 538
++ Y +WRD+
Sbjct: 130 LAALLLLPYLAWLTVTTSITYRLWRDS 156
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,779,395
Number of extensions: 619069
Number of successful extensions: 3403
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3391
Number of HSP's successfully gapped: 5
Length of query: 271
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 174
Effective length of database: 8,928,923
Effective search space: 1553632602
Effective search space used: 1553632602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000599
(813 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 817 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 817 bits (412), Expect = 0.0
Identities = 412/412 (100%)
Strand = Plus / Minus
Query: 385 ggccctggtggacctcgtgctgacgggtggactggcagcagccacggcagtggcctggta 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3146202 ggccctggtggacctcgtgctgacgggtggactggcagcagccacggcagtggcctggta 3146143
Query: 445 tcaggtgagccctctggccgcccgcctgctgtacccctacctggcctggctggccttcgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3146142 tcaggtgagccctctggccgcccgcctgctgtacccctacctggcctggctggccttcgc 3146083
Query: 505 ggccacgctcaactactgcgtgtggcgggacaaccagggccgccgtggtggccgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3146082 ggccacgctcaactactgcgtgtggcgggacaaccagggccgccgtggtggccgccggcc 3146023
Query: 565 ctcggagtgagagtgccccggcctccaaggaccgcagccgctgcatgtccagtgttgccg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3146022 ctcggagtgagagtgccccggcctccaaggaccgcagccgctgcatgtccagtgttgccg 3145963
Query: 625 gtgacggtggcccctgggctgcctgtctgtctggtctcagcccagggggtcaccagccga 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3145962 gtgacggtggcccctgggctgcctgtctgtctggtctcagcccagggggtcaccagccga 3145903
Query: 685 ttcagaggtgctccaggctgagaccctgccccagaaacagcgtcctgcgctttctgcact 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3145902 ttcagaggtgctccaggctgagaccctgccccagaaacagcgtcctgcgctttctgcact 3145843
Query: 745 gctcgctctcagaatgaggaaatttataagccaaataaagtttttaacctcc 796
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3145842 gctcgctctcagaatgaggaaatttataagccaaataaagtttttaacctcc 3145791
Score = 426 bits (215), Expect = e-117
Identities = 215/215 (100%)
Strand = Plus / Minus
Query: 35 gagctttccagaacagcagctgcagcagcaatggccccaccctgggtgcccgctgtgggc 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3149061 gagctttccagaacagcagctgcagcagcaatggccccaccctgggtgcccgctgtgggc 3149002
Query: 95 ttcacgctggtgcccagcctggggggcttcctgagctcgcgcaatgtcctcggaaagggc 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3149001 ttcacgctggtgcccagcctggggggcttcctgagctcgcgcaatgtcctcggaaagggc 3148942
Query: 155 ctccactggtacgccggcttgcagaagccctcgtggcacccgccgcactggacactggcc 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3148941 ctccactggtacgccggcttgcagaagccctcgtggcacccgccgcactggacactggcc 3148882
Query: 215 cccatctggggcacactctactcggccatggggta 249
|||||||||||||||||||||||||||||||||||
Sbjct: 3148881 cccatctggggcacactctactcggccatggggta 3148847
Score = 280 bits (141), Expect = 1e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 246 ggtatggctcctacatgatctggaaagagctggggggcttctcggaggaggctgtggttc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3146686 ggtatggctcctacatgatctggaaagagctggggggcttctcggaggaggctgtggttc 3146627
Query: 306 ccctgggcctctacgctgggcagctggctctgaactgggcatggcctcccctcttctttg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3146626 ccctgggcctctacgctgggcagctggctctgaactgggcatggcctcccctcttctttg 3146567
Query: 366 gcgcccgacaaatgggttggg 386
|||||||||||||||||||||
Sbjct: 3146566 gcgcccgacaaatgggttggg 3146546
Score = 67.9 bits (34), Expect = 8e-09
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 2 gcagtacccttcccggagcgagtccttgtcgctg 35
||||||||||||||||||||||||||||||||||
Sbjct: 3157664 gcagtacccttcccggagcgagtccttgtcgctg 3157631
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,346,261
Number of extensions: 182
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 4
Length of query: 813
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 792
Effective length of database: 2,808,413,156
Effective search space: 2224263219552
Effective search space used: 2224263219552
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)