Animal-Genome cDNA 20110601C-000611


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000611
         (919 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype...   283   1e-76
Alignment   gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo...   261   8e-70
Alignment   gi|XP_002694712.1| PREDICTED: immunoglobulin lambda-6a light ch...   142   4e-34
Alignment   gi|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].        132   5e-31
Alignment   gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].         127   2e-29
Alignment   gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].         127   2e-29
Alignment   gi|XP_001790304.2| PREDICTED: immunoglobulin iota chain-like, p...   117   1e-26
Alignment   gi|XP_002694688.1| PREDICTED: immunoglobulin iota chain-like, p...   113   3e-25
Alignment   gi|XP_002694708.1| PREDICTED: immunoglobulin iota chain-like [B...   112   6e-25
Alignment   gi|XP_876407.2| PREDICTED: immunoglobin light chain VJ region, ...   105   6e-23

>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
           taurus].
          Length = 236

 Score =  283 bits (724), Expect = 1e-76
 Identities = 144/236 (61%), Positives = 168/236 (71%), Gaps = 5/236 (2%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF-VYAANWYQQKPGQ 218
           MAWT         CTG++ASSQLTQ P VSVSLG TASI C GD+  + +A+WYQQKPGQ
Sbjct: 1   MAWTPLLLPLLTLCTGHLASSQLTQPPAVSVSLGQTASITCQGDDLELLSAHWYQQKPGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAP---- 386
           AP+LVIY       GIP+RFSGS S  +ATLTI GAQAEDEADYYCQSAD S        
Sbjct: 61  APVLVIYADDNLASGIPDRFSGSKSDTTATLTIRGAQAEDEADYYCQSADISGPVSLCDL 120

Query: 387 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 566
           FGGGT +TVLGQPK+ P+V LFPPS EEL  NKATLVCLISDFYPG+VTV WKA  +T+T
Sbjct: 121 FGGGTRVTVLGQPKSPPSVTLFPPSKEELSANKATLVCLISDFYPGSVTVAWKADGSTIT 180

Query: 567 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           + V+TT+ SKQSN+K            DWKS   ++C+VTHEG+ V KTV  S C+
Sbjct: 181 RNVKTTRASKQSNSKYAASSYLSLTDSDWKSKGSYSCEVTHEGSTVTKTVKTSACS 236


>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
          Length = 235

 Score =  261 bits (666), Expect = 8e-70
 Identities = 133/235 (56%), Positives = 158/235 (67%), Gaps = 4/235 (1%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF---VYAANWYQQKP 212
           MAW+         CTG  A + LTQ   VS SLG   SI C G +    +Y  NWYQQ P
Sbjct: 1   MAWSPLLLTLVALCTGSWAQAVLTQPSSVSGSLGQRVSITCSGSSTNIGIYGVNWYQQVP 60

Query: 213 GQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDN-APF 389
           G     +IY    RP G+P+RFSGS SGN+ATLTI+  QAEDEADY+C + D S N A F
Sbjct: 61  GSGLKTIIYEDKYRPSGVPDRFSGSKSGNTATLTINSLQAEDEADYFCAAGDYSVNTAVF 120

Query: 390 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQ 569
           GGGT LTVLGQPK+ P+V LFPPS+EEL  NKATLVCLISDFYPG+VTV WKA  +T+T+
Sbjct: 121 GGGTTLTVLGQPKSPPSVTLFPPSTEELNGNKATLVCLISDFYPGSVTVVWKADGSTITR 180

Query: 570 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
            VETT+ SKQSN+K            DWKS   ++C+VTHEG+ V KTV PSEC+
Sbjct: 181 NVETTRASKQSNSKYAASSYLSLTSSDWKSKGSYSCEVTHEGSTVTKTVKPSECS 235


>ref|XP_002694712.1| PREDICTED: immunoglobulin lambda-6a light chain variable
           region-like [Bos taurus].
          Length = 141

 Score =  142 bits (358), Expect = 4e-34
 Identities = 73/112 (65%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF-VYAANWYQQKPGQ 218
           MAWT         C G++ASSQLTQ P VSVSLG TASI C GD+  + +A+WYQQKPGQ
Sbjct: 1   MAWTPLLLPLLTLCAGHLASSQLTQPPAVSVSLGQTASITCQGDDLELLSAHWYQQKPGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
           AP+LVIY       GIP+RFSGS S  +ATLTI GAQAEDEADYYCQSAD S
Sbjct: 61  APVLVIYADDNLASGIPDRFSGSKSDTTATLTIRGAQAEDEADYYCQSADIS 112


>ref|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].
          Length = 260

 Score =  132 bits (331), Expect = 5e-31
 Identities = 63/116 (54%), Positives = 80/116 (68%)
 Frame = +3

Query: 387 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 566
           FG GT +T+  QPK  P+V LFPPS+EEL T  ATLVCLISDFYPG VTV WKA  + VT
Sbjct: 145 FGSGTKVTIPDQPKFPPSVTLFPPSTEELSTYTATLVCLISDFYPGNVTVAWKADGSPVT 204

Query: 567 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           +GV T++ S+QS++K            +WK  S ++C+VTHEG+ V KTV PS C+
Sbjct: 205 RGVVTSQASQQSSSKYVASSYLTLTGSEWKPKSSYSCEVTHEGSTVTKTVKPSACS 260


>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
          Length = 235

 Score =  127 bits (318), Expect = 2e-29
 Identities = 82/217 (37%), Positives = 115/217 (52%), Gaps = 8/217 (3%)
 Frame = +3

Query: 105 QLTQVPG-VSVSLGGTASIACLGDNFVYAA-NWYQQKPGQAPILVIYGGSLRPLGIPERF 278
           Q+TQ P  +S SLG   SI C     +     WYQQKPG+AP L+IY     P   P +F
Sbjct: 23  QVTQSPSSLSASLGDRVSITCQASQSIDTKLAWYQQKPGKAPKLLIYAIPRSPSWFPSQF 82

Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGGTHLTVLGQPKATPTVNLFPP 458
           SGS  G   TLTIS  +A+D A YYC S +   N  FG GT + +  +  A P+V LF P
Sbjct: 83  SGSGFGADFTLTISSLKADDIATYYCLSRNCCVNT-FGQGTKVEI-KRSDAEPSVFLFKP 140

Query: 459 SSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT----QGVETTKPSKQSNNKXXXXX 626
           S E+L T   ++VCL++DFYP  + V WK    T +    Q   T + SK+S        
Sbjct: 141 SDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKKST--YSLSS 198

Query: 627 XXXXXXXDWKSSSGFTCQVTHEG--TIVEKTVTPSEC 731
                  +++S   +TC+V+H+   T + K+ + +EC
Sbjct: 199 ILTLPSSEYQSHDAYTCEVSHKSLTTTLVKSFSKNEC 235


>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
          Length = 235

 Score =  127 bits (318), Expect = 2e-29
 Identities = 82/217 (37%), Positives = 115/217 (52%), Gaps = 8/217 (3%)
 Frame = +3

Query: 105 QLTQVPG-VSVSLGGTASIACLGDNFVYAA-NWYQQKPGQAPILVIYGGSLRPLGIPERF 278
           Q+TQ P  +S SLG   SI C     +     WYQQKPG+AP L+IY     P   P +F
Sbjct: 23  QVTQSPSSLSASLGDRVSITCQASQSIDTKLAWYQQKPGKAPKLLIYAIPRSPSWFPSQF 82

Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGGTHLTVLGQPKATPTVNLFPP 458
           SGS  G   TLTIS  +A+D A YYC S +   N  FG GT + +  +  A P+V LF P
Sbjct: 83  SGSGFGADFTLTISSLKADDIATYYCLSRNCCVNT-FGQGTKVEI-KRSDAEPSVFLFKP 140

Query: 459 SSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT----QGVETTKPSKQSNNKXXXXX 626
           S E+L T   ++VCL++DFYP  + V WK    T +    Q   T + SK+S        
Sbjct: 141 SDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKKST--YSLSS 198

Query: 627 XXXXXXXDWKSSSGFTCQVTHEG--TIVEKTVTPSEC 731
                  +++S   +TC+V+H+   T + K+ + +EC
Sbjct: 199 ILTLPSSEYQSHDAYTCEVSHKSLTTTLVKSFSKNEC 235


>ref|XP_001790304.2| PREDICTED: immunoglobulin iota chain-like, partial [Bos taurus].
          Length = 218

 Score =  117 bits (293), Expect = 1e-26
 Identities = 64/128 (50%), Positives = 77/128 (60%), Gaps = 4/128 (3%)
 Frame = +3

Query: 3   RLSLRGRAQGTSTMAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFV 182
           R+  R  A   STMAW+         CTG  A + LTQ P VS SLG   +I+C G +  
Sbjct: 40  RVKGRQNALTVSTMAWSPLLLTLVTLCTGSWAQAVLTQPPSVSGSLGQRVTISCTGSSSN 99

Query: 183 YAAN----WYQQKPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADY 350
                   WYQQ PG AP  +IY  + RP G+P+RFSGS SGN+ATLTIS  QAEDEADY
Sbjct: 100 IGGGNCVGWYQQIPGSAPKTLIYRSTSRPSGVPDRFSGSRSGNTATLTISSLQAEDEADY 159

Query: 351 YCQSADSS 374
           YC + +SS
Sbjct: 160 YCATYESS 167


>ref|XP_002694688.1| PREDICTED: immunoglobulin iota chain-like, partial [Bos taurus].
          Length = 169

 Score =  113 bits (282), Expect = 3e-25
 Identities = 60/118 (50%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
 Frame = +3

Query: 36  STMAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA---ANWYQQ 206
           STMAW+         CTG  A + LTQ   VS SLG   SI C G +        +W+QQ
Sbjct: 2   STMAWSPLFLTLVALCTGSWAQAVLTQPSSVSGSLGQRVSITCTGSSSNVGNGYVSWFQQ 61

Query: 207 KPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDN 380
            PG AP  +IYG + R  G+P+RFSGS SGN+ATLTIS  QAEDEADY+C + DSS +
Sbjct: 62  IPGSAPRTLIYGDTSRASGVPDRFSGSRSGNTATLTISSLQAEDEADYFCAAGDSSSS 119


>ref|XP_002694708.1| PREDICTED: immunoglobulin iota chain-like [Bos taurus].
          Length = 153

 Score =  112 bits (279), Expect = 6e-25
 Identities = 59/115 (51%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYAAN----WYQQK 209
           MAW+         CTG  A + LTQ P VS SLG   +I+C G +          WYQQ 
Sbjct: 1   MAWSPLLLTLVTLCTGSWAQAVLTQPPSVSGSLGQRVTISCTGSSSNIGGGNCVGWYQQI 60

Query: 210 PGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
           PG AP  +IY  + RP G+P+RFSGS SGN+ATLTIS  QAEDEADYYC + +SS
Sbjct: 61  PGSAPKTLIYRSTSRPSGVPDRFSGSRSGNTATLTISSLQAEDEADYYCATYESS 115


>ref|XP_876407.2| PREDICTED: immunoglobin light chain VJ region, partial [Bos
           taurus].
          Length = 126

 Score =  105 bits (262), Expect = 6e-23
 Identities = 61/118 (51%), Positives = 71/118 (60%), Gaps = 4/118 (3%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA---ANWYQQKP 212
           MAW+          TG  A + LTQ   VS SLG   SI C G +        +WYQ  P
Sbjct: 1   MAWSPLLLTLVALFTGSWAQAVLTQPSSVSGSLGQRVSITCSGSSSNVGNGYVSWYQLIP 60

Query: 213 GQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSA-DSSDNA 383
           G AP  +IYG + R  G+P+RFSGS SGN+ATLTIS  QAEDEADY+C SA DSS NA
Sbjct: 61  GSAPRTLIYGDTSRASGVPDRFSGSRSGNTATLTISSLQAEDEADYFCASAEDSSSNA 118


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,197,064
Number of extensions: 1137330
Number of successful extensions: 6260
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 6166
Number of HSP's successfully gapped: 30
Length of query: 306
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,306,398
Effective search space: 2918505192
Effective search space used: 2918505192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000611
         (919 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_855821.1| PREDICTED: similar to Immunoglobulin lambda-lik...   290   1e-78
Alignment   gi|XP_855777.1| PREDICTED: similar to Immunoglobulin lambda-lik...   278   5e-75
Alignment   gi|XP_848579.1| PREDICTED: similar to Immunoglobulin lambda-lik...   278   7e-75
Alignment   gi|XP_856398.1| PREDICTED: similar to Immunoglobulin lambda-lik...   276   1e-74
Alignment   gi|XP_856315.1| PREDICTED: similar to Immunoglobulin lambda-lik...   276   1e-74
Alignment   gi|XP_856144.1| PREDICTED: similar to Immunoglobulin lambda-lik...   276   1e-74
Alignment   gi|XP_856357.1| PREDICTED: similar to Immunoglobulin lambda-lik...   276   2e-74
Alignment   gi|XP_856188.1| PREDICTED: similar to Immunoglobulin lambda-lik...   276   3e-74
Alignment   gi|XP_856273.1| PREDICTED: similar to Immunoglobulin lambda-lik...   275   3e-74
Alignment   gi|XP_856233.1| PREDICTED: similar to Immunoglobulin lambda-lik...   275   4e-74

>ref|XP_855821.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
           precursor (Immunoglobulin-related 14.1 protein)
           (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
           antigen) isoform 3 [Canis familiaris].
          Length = 231

 Score =  290 bits (742), Expect = 1e-78
 Identities = 151/232 (65%), Positives = 168/232 (72%), Gaps = 1/232 (0%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF-VYAANWYQQKPGQ 218
           MAWT         CTG VAS  LTQ+P  +V+L   A I C GDN    + +WYQQK GQ
Sbjct: 1   MAWTHLLLSLLALCTGSVASYVLTQLPSKNVTLKQPAHITCGGDNIGSKSVHWYQQKLGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGG 398
           AP+L+IY  S RP GIPERFSG++SGN+ATLTISGA AEDEADYYCQ  DSS    FGGG
Sbjct: 61  APVLIIYYDSSRPTGIPERFSGANSGNTATLTISGALAEDEADYYCQVWDSSALV-FGGG 119

Query: 399 THLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGVE 578
           THLTVLGQPKA+P+V LFPPSSEELG NKATLVCLISDFYP  VTV WKA  + VTQGVE
Sbjct: 120 THLTVLGQPKASPSVTLFPPSSEELGANKATLVCLISDFYPSGVTVAWKADGSPVTQGVE 179

Query: 579 TTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           TTKPSKQSNNK             WKS S F+C VTHEG+ VEK V P+EC+
Sbjct: 180 TTKPSKQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHEGSTVEKKVAPAECS 231


>ref|XP_855777.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
           precursor (Immunoglobulin-related 14.1 protein)
           (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
           antigen) isoform 2 [Canis familiaris].
          Length = 233

 Score =  278 bits (711), Expect = 5e-75
 Identities = 144/233 (61%), Positives = 165/233 (70%), Gaps = 2/233 (0%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF-VYAANWYQQKPGQ 218
           MAWT         CTG VAS  LTQ+P  +V+L   A I C GDN    + +WYQQK GQ
Sbjct: 1   MAWTHLLLSLLALCTGSVASYVLTQLPSKNVTLKQPAHITCGGDNIGSKSVHWYQQKLGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNA-PFGG 395
           AP+L+IY  S RP GIPERFSG++SGN+ATLTISGA AEDEADYYCQ  DSS +   FG 
Sbjct: 61  APVLIIYYDSSRPTGIPERFSGANSGNTATLTISGALAEDEADYYCQVWDSSGHCWVFGE 120

Query: 396 GTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGV 575
           GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP  + V WKA  +T+ QGV
Sbjct: 121 GTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGV 180

Query: 576 ETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           ETTKPSKQSNNK             WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 ETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 233


>ref|XP_848579.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
           precursor (Immunoglobulin-related 14.1 protein)
           (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
           antigen) isoform 1 [Canis familiaris].
          Length = 233

 Score =  278 bits (710), Expect = 7e-75
 Identities = 143/233 (61%), Positives = 166/233 (71%), Gaps = 2/233 (0%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
           MAWT         CTG VAS  LTQ P VSV+LG TASI C G++      +WYQQKPGQ
Sbjct: 1   MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS-DNAPFGG 395
           AP+L+IY  + +P GIPERFSG++SG++ATLTIS AQ  DEADYYCQ  +SS D   FG 
Sbjct: 61  APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWESSADCWVFGE 120

Query: 396 GTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGV 575
           GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP  + V WKA  +T+ QGV
Sbjct: 121 GTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGV 180

Query: 576 ETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           ETTKPSKQSNNK             WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 ETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 233


>ref|XP_856398.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
           precursor (Immunoglobulin-related 14.1 protein)
           (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
           antigen) isoform 17 [Canis familiaris].
          Length = 234

 Score =  276 bits (707), Expect = 1e-74
 Identities = 142/234 (60%), Positives = 165/234 (70%), Gaps = 3/234 (1%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
           MAWT         CTG VAS  LTQ P VSV+LG TASI C G++      +WYQQKPGQ
Sbjct: 1   MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNA--PFG 392
           AP+L+IY  + +P GIPERFSG++SG++ATLTIS AQ  DEADYYCQ  +SS      FG
Sbjct: 61  APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWESSSKNCWVFG 120

Query: 393 GGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQG 572
            GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP  + V WKA  +T+ QG
Sbjct: 121 EGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQG 180

Query: 573 VETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           VETTKPSKQSNNK             WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 VETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 234


>ref|XP_856315.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
           precursor (Immunoglobulin-related 14.1 protein)
           (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
           antigen) isoform 15 [Canis familiaris].
          Length = 232

 Score =  276 bits (707), Expect = 1e-74
 Identities = 141/232 (60%), Positives = 164/232 (70%), Gaps = 1/232 (0%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
           MAWT         CTG VAS  LTQ P VSV+LG TASI C G++      +WYQQKPGQ
Sbjct: 1   MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGG 398
           AP+L+IY  + +P GIPERFSG++SG++ATLTIS AQ  DEADYYCQ  + S    FG G
Sbjct: 61  APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWEISVCWVFGEG 120

Query: 399 THLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGVE 578
           T LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP  + V WKA  +T+ QGVE
Sbjct: 121 TQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGVE 180

Query: 579 TTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           TTKPSKQSNNK             WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 TTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232


>ref|XP_856144.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
           precursor (Immunoglobulin-related 14.1 protein)
           (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
           antigen) isoform 11 [Canis familiaris].
          Length = 232

 Score =  276 bits (707), Expect = 1e-74
 Identities = 140/232 (60%), Positives = 163/232 (70%), Gaps = 1/232 (0%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
           MAWT         CTG VAS  LTQ P VSV+LG TASI C G++      +WYQQKPGQ
Sbjct: 1   MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGG 398
           AP+L+IY  + +P GIPERFSG++SG++ATLTIS AQ  DEADYYCQ    +    FG G
Sbjct: 61  APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQKHRGAGCWVFGEG 120

Query: 399 THLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGVE 578
           T LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP  + V WKA  +T+ QGVE
Sbjct: 121 TQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGVE 180

Query: 579 TTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           TTKPSKQSNNK             WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 TTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232


>ref|XP_856357.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
           precursor (Immunoglobulin-related 14.1 protein)
           (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
           antigen) isoform 16 [Canis familiaris].
          Length = 232

 Score =  276 bits (706), Expect = 2e-74
 Identities = 140/232 (60%), Positives = 164/232 (70%), Gaps = 1/232 (0%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
           MAWT         CTG VAS  LTQ P VSV+LG TASI C G++      +WYQQKPGQ
Sbjct: 1   MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGG 398
           AP+L+IY  + +P GIPERFSG++SG++ATLTIS AQ  DEADYYCQ  ++     FG G
Sbjct: 61  APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWENKYCWVFGEG 120

Query: 399 THLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGVE 578
           T LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP  + V WKA  +T+ QGVE
Sbjct: 121 TQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGVE 180

Query: 579 TTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           TTKPSKQSNNK             WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 TTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232


>ref|XP_856188.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
           precursor (Immunoglobulin-related 14.1 protein)
           (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
           antigen) isoform 12 [Canis familiaris].
          Length = 232

 Score =  276 bits (705), Expect = 3e-74
 Identities = 140/232 (60%), Positives = 162/232 (69%), Gaps = 1/232 (0%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
           MAWT         CTG VAS  LTQ P VSV+LG TASI C G++      +WYQQKPGQ
Sbjct: 1   MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGG 398
           AP+L+IY  + +P GIPERFSG++SG++ATLTIS AQ  DEADYYCQ         FG G
Sbjct: 61  APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVHGGGGCWVFGEG 120

Query: 399 THLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGVE 578
           T LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP  + V WKA  +T+ QGVE
Sbjct: 121 TQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGVE 180

Query: 579 TTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           TTKPSKQSNNK             WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 TTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232


>ref|XP_856273.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
           precursor (Immunoglobulin-related 14.1 protein)
           (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
           antigen) isoform 14 [Canis familiaris].
          Length = 234

 Score =  275 bits (704), Expect = 3e-74
 Identities = 140/234 (59%), Positives = 165/234 (70%), Gaps = 3/234 (1%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
           MAWT         CTG VAS  LTQ P VSV+LG TASI C G++      +WYQQKPGQ
Sbjct: 1   MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNA--PFG 392
           AP+L+IY  + +P GIPERFSG++SG++ATLTIS AQ  DEADYYCQ   + ++    FG
Sbjct: 61  APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQEMHTPESQCWVFG 120

Query: 393 GGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQG 572
            GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP  + V WKA  +T+ QG
Sbjct: 121 EGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQG 180

Query: 573 VETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           VETTKPSKQSNNK             WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 VETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 234


>ref|XP_856233.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
           precursor (Immunoglobulin-related 14.1 protein)
           (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
           antigen) isoform 13 [Canis familiaris].
          Length = 232

 Score =  275 bits (703), Expect = 4e-74
 Identities = 140/232 (60%), Positives = 162/232 (69%), Gaps = 1/232 (0%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
           MAWT         CTG VAS  LTQ P VSV+LG TASI C G++      +WYQQKPGQ
Sbjct: 1   MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGG 398
           AP+L+IY  + +P GIPERFSG++SG++ATLTIS AQ  DEADYYCQ         FG G
Sbjct: 61  APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQHYHHDYCWVFGEG 120

Query: 399 THLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGVE 578
           T LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP  + V WKA  +T+ QGVE
Sbjct: 121 TQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGVE 180

Query: 579 TTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           TTKPSKQSNNK             WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 TTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,591,350
Number of extensions: 1132601
Number of successful extensions: 6457
Number of sequences better than 1.0e-05: 225
Number of HSP's gapped: 6083
Number of HSP's successfully gapped: 236
Length of query: 306
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 204
Effective length of database: 15,474,232
Effective search space: 3156743328
Effective search space used: 3156743328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000611
         (919 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Ho...   162   4e-40
Alignment   gi|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isofor...   159   4e-39
Alignment   gi|XP_003403579.1| PREDICTED: ig kappa chain V-III region VH-li...    89   7e-18
Alignment   gi|XP_003403553.1| PREDICTED: ig kappa chain V-III region VH-li...    89   7e-18
Alignment   gi|XP_003403802.1| PREDICTED: ig kappa chain V-III region VH-li...    89   7e-18
Alignment   gi|XP_003403581.1| PREDICTED: ig kappa chain V-I region Walker-...    86   4e-17
Alignment   gi|XP_003403580.1| PREDICTED: ig kappa chain V-I region Walker-...    85   1e-16
Alignment   gi|XP_003403595.1| PREDICTED: ig kappa chain V-I region HK101-l...    85   1e-16
Alignment   gi|XP_003403669.1| PREDICTED: hypothetical protein LOC642424 [H...    85   1e-16
Alignment   gi|XP_003403801.1| PREDICTED: ig kappa chain V-III region VG-li...    84   2e-16

>ref|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Homo sapiens].
          Length = 214

 Score =  162 bits (410), Expect = 4e-40
 Identities = 79/116 (68%), Positives = 86/116 (74%)
 Frame = +3

Query: 387 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 566
           FG GT +TVLGQPKA PTV LFPPSSEEL  NKATLVCLISDFYPGAVTV WKA  + V 
Sbjct: 99  FGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVK 158

Query: 567 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
            GVETTKPSKQSNNK             WKS   ++CQVTHEG+ VEKTV P+EC+
Sbjct: 159 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS 214


>ref|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isoform a precursor [Homo
           sapiens].
          Length = 213

 Score =  159 bits (401), Expect = 4e-39
 Identities = 77/126 (61%), Positives = 89/126 (70%)
 Frame = +3

Query: 357 QSADSSDNAPFGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTV 536
           QS  +S    FG GT LTVL QPKATP+V LFPPSSEEL  NKATLVCL++DFYPG +TV
Sbjct: 88  QSKHNSVTHVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTV 147

Query: 537 TWKAGSTTVTQGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTV 716
           TWKA  T +TQGVE T PSKQSNNK             W+S   ++CQV HEG+ VEKTV
Sbjct: 148 TWKADGTPITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTV 207

Query: 717 TPSECA 734
            P+EC+
Sbjct: 208 APAECS 213


>ref|XP_003403579.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
          Length = 155

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 48/87 (55%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
 Frame = +3

Query: 108 LTQVPG-VSVSLGGTASIACLGDNFVYAA--NWYQQKPGQAPILVIYGGSLRPLGIPERF 278
           +TQ P  +S+S G  A+++C     V ++  +WYQQKPGQAP L+IYG S R  GIP RF
Sbjct: 27  MTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQAPRLLIYGASTRATGIPARF 86

Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQ 359
           SGS SG   TLTIS  Q ED A YYCQ
Sbjct: 87  SGSGSGTDFTLTISSLQPEDFAVYYCQ 113


>ref|XP_003403553.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
          Length = 151

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 48/87 (55%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
 Frame = +3

Query: 108 LTQVPG-VSVSLGGTASIACLGDNFVYAA--NWYQQKPGQAPILVIYGGSLRPLGIPERF 278
           +TQ P  +S+S G  A+++C     V ++  +WYQQKPGQAP L+IYG S R  GIP RF
Sbjct: 24  MTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQAPRLLIYGASTRATGIPARF 83

Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQ 359
           SGS SG   TLTIS  Q ED A YYCQ
Sbjct: 84  SGSGSGTDFTLTISSLQPEDFAVYYCQ 110


>ref|XP_003403802.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
          Length = 170

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 48/87 (55%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
 Frame = +3

Query: 108 LTQVPG-VSVSLGGTASIACLGDNFVYAA--NWYQQKPGQAPILVIYGGSLRPLGIPERF 278
           +TQ P  +S+S G  A+++C     V ++  +WYQQKPGQAP L+IYG S R  GIP RF
Sbjct: 42  MTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQAPRLLIYGASTRATGIPARF 101

Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQ 359
           SGS SG   TLTIS  Q ED A YYCQ
Sbjct: 102 SGSGSGTDFTLTISSLQPEDFAVYYCQ 128


>ref|XP_003403581.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
          Length = 164

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 47/92 (51%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
 Frame = +3

Query: 105 QLTQVPG-VSVSLGGTASIACLGDNFVYA-ANWYQQKPGQAPILVIYGGSLRPLGIPERF 278
           Q+TQ P  +S S+GG  +I C     +    NWYQQKPG+ P L+IY  S    GIP RF
Sbjct: 64  QMTQSPSSLSASVGGRVTITCRASQGISNNLNWYQQKPGKTPKLLIYAASSLQSGIPSRF 123

Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
           S S SG   TLTIS  Q ED A YYCQ +DS+
Sbjct: 124 SDSGSGADYTLTISSLQPEDFAAYYCQQSDST 155


>ref|XP_003403580.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
          Length = 202

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 46/92 (50%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
 Frame = +3

Query: 105 QLTQVPG-VSVSLGGTASIACLGDNFVYA-ANWYQQKPGQAPILVIYGGSLRPLGIPERF 278
           Q+TQ P  +S S+G   +I C     +    NWYQQKPG+ P L+IY  S    GIP RF
Sbjct: 102 QMTQSPSSLSASVGDRVTITCRASQGISNNLNWYQQKPGKTPKLLIYAASSLQSGIPSRF 161

Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
           S S SG   TLTIS  Q ED A YYCQ +DS+
Sbjct: 162 SDSGSGTDYTLTISSLQPEDFATYYCQQSDST 193


>ref|XP_003403595.1| PREDICTED: ig kappa chain V-I region HK101-like [Homo sapiens].
          Length = 153

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 46/92 (50%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
 Frame = +3

Query: 105 QLTQVPG-VSVSLGGTASIAC-LGDNFVYAANWYQQKPGQAPILVIYGGSLRPLGIPERF 278
           Q+TQ P  +S S+GG  +I C +        NWYQQKP + P L+IY  S    GIP RF
Sbjct: 53  QMTQSPSSLSASVGGRVTITCRVSQGISNNLNWYQQKPRKTPKLLIYAASSLQSGIPSRF 112

Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
           S S SG   TLTIS  Q ED A YYCQ +DS+
Sbjct: 113 SDSGSGTDYTLTISSLQPEDFATYYCQQSDSN 144


>ref|XP_003403669.1| PREDICTED: hypothetical protein LOC642424 [Homo sapiens].
          Length = 436

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 46/92 (50%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
 Frame = +3

Query: 105 QLTQVPG-VSVSLGGTASIACLGDNFVYA-ANWYQQKPGQAPILVIYGGSLRPLGIPERF 278
           Q+TQ P  +S S+G   +I C     +    NWYQQKPG+ P L+IY  S    GIP RF
Sbjct: 336 QMTQSPSSLSASVGDRVTITCRASQGISNNLNWYQQKPGKTPKLLIYAASSLQSGIPSRF 395

Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
           S S SG   TLTIS  Q ED A YYCQ +DS+
Sbjct: 396 SDSGSGTDYTLTISSLQPEDFATYYCQQSDST 427


>ref|XP_003403801.1| PREDICTED: ig kappa chain V-III region VG-like [Homo sapiens].
          Length = 152

 Score = 83.6 bits (205), Expect = 2e-16
 Identities = 49/87 (56%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
 Frame = +3

Query: 108 LTQVPG-VSVSLGGTASIACLGDNFV--YAANWYQQKPGQAPILVIYGGSLRPLGIPERF 278
           LTQ P  +S+S G  A+++C     V  Y A WYQQKPGQAP L+IY  S R  GIP RF
Sbjct: 24  LTQSPATLSLSPGERATLSCRASQSVSSYLA-WYQQKPGQAPRLLIYDASNRATGIPARF 82

Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQ 359
           SGS SG   TLTIS  + ED A YYCQ
Sbjct: 83  SGSGSGTDFTLTISSLEPEDFAVYYCQ 109


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,648,795
Number of extensions: 1088453
Number of successful extensions: 5846
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 5768
Number of HSP's successfully gapped: 18
Length of query: 306
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,934,836
Effective search space: 3046706544
Effective search space used: 3046706544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000611
         (919 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mu...   140   2e-33
Alignment   gi|NP_058679.1| immunoglobulin omega chain precursor [Mus muscu...    65   6e-11
Alignment   gi|XP_357633.3| PREDICTED: similar to Ig kappa chain V-V region...    65   7e-11
Alignment   gi|NP_058678.1| immunoglobulin iota chain precursor [Mus muscul...    64   2e-10
Alignment   gi|NP_033540.1| pre-B lymphocyte protein 3 [Mus musculus].            59   7e-09

>ref|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mus musculus].
          Length = 209

 Score =  140 bits (352), Expect = 2e-33
 Identities = 65/116 (56%), Positives = 80/116 (68%)
 Frame = +3

Query: 387 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 566
           FGGGT LT+LGQPK+ P V LF PS + L  NKATLVCL+S+FYPG + V WK     VT
Sbjct: 94  FGGGTQLTILGQPKSDPLVTLFLPSLKNLQANKATLVCLVSEFYPGTLVVDWKVDGVPVT 153

Query: 567 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           QGVETT+PSKQ+NNK             W   S ++C+VTHEG  VEK+V+P+EC+
Sbjct: 154 QGVETTQPSKQTNNKYMVSSYLTLISDQWMPHSRYSCRVTHEGNTVEKSVSPAECS 209


>ref|NP_058679.1| immunoglobulin omega chain precursor [Mus musculus].
          Length = 142

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 45/115 (39%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDN----FVYAANWYQQK 209
           MAWT          TG      + Q P  S SLG T  ++C   N     +Y+  WYQQ+
Sbjct: 1   MAWTSVLLMLLAHLTGCGPQPMVHQPPSASSSLGATIRLSCTLSNDHNIGIYSIYWYQQR 60

Query: 210 PGQAP--ILVIYGGSLRPLG--IPERFSGS--SSGNSATLTISGAQAEDEADYYC 356
           PG  P  +L  +  S +  G  IP RFSGS  ++ N   L+IS  Q EDEA YYC
Sbjct: 61  PGHPPRFLLRYFSHSDKHQGPDIPPRFSGSKDTARNLGYLSISELQPEDEAVYYC 115


>ref|XP_357633.3| PREDICTED: similar to Ig kappa chain V-V region L7 precursor [Mus
           musculus].
          Length = 216

 Score = 65.1 bits (157), Expect = 7e-11
 Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
 Frame = +3

Query: 108 LTQVPG-VSVSLGGTASIACLGDNFVYA-ANWYQQKPGQAPILVIYGGSLRPLGIPERFS 281
           +TQ P  +SV+ G   S++C     +    +WYQQK  ++P L+I   S    GIP RFS
Sbjct: 107 MTQSPATLSVTPGDRVSLSCRASQSISDYLHWYQQKSHESPRLLIKYASQSISGIPSRFS 166

Query: 282 GSSSGNSATLTISGAQAEDEADYYCQSADS 371
           GS SG+  TL+I+  + ED   YYCQ+  S
Sbjct: 167 GSGSGSDFTLSINSVEPEDVGVYYCQNGHS 196


>ref|NP_058678.1| immunoglobulin iota chain precursor [Mus musculus].
          Length = 142

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 45/115 (39%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF----VYAANWYQQK 209
           MAWT          TG      + Q P  S SLG T  ++C   N     +Y+  WYQQ+
Sbjct: 1   MAWTSVLLMLLAYLTGCGPQPMVHQPPLASSSLGATIRLSCTLSNDHNIGIYSIYWYQQR 60

Query: 210 PGQAP--ILVIYGGSLRPLG--IPERFSGS--SSGNSATLTISGAQAEDEADYYC 356
           PG  P  +L  +  S +  G  IP RFSGS  ++ N   L+IS  Q EDEA YYC
Sbjct: 61  PGHPPRFLLRYFSHSDKHQGPDIPPRFSGSKDTTRNLGYLSISELQPEDEAVYYC 115


>ref|NP_033540.1| pre-B lymphocyte protein 3 [Mus musculus].
          Length = 123

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
 Frame = +3

Query: 108 LTQVPGVSVSLGGTASIACLGDNFVYAA-----NWYQQKPGQAPILVIYGGS---LRPLG 263
           LTQ    SV  G  A ++C  ++    A     +WYQQ+PG AP L+ Y       RP  
Sbjct: 23  LTQPDAFSVFPGQDAHLSCTINSQHATAGDIGVSWYQQQPGSAPHLLYYYAEEEHYRPAD 82

Query: 264 IPERFSGS--SSGNSATLTISGAQAEDEADYYCQSA 365
           IP+RFS +  ++ N+  LTIS    ED+ADY+C  A
Sbjct: 83  IPDRFSATVDAAHNACILTISPVLPEDDADYFCSIA 118


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,812,536
Number of extensions: 887984
Number of successful extensions: 4644
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4587
Number of HSP's successfully gapped: 5
Length of query: 306
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 205
Effective length of database: 12,583,923
Effective search space: 2579704215
Effective search space used: 2579704215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000611
         (919 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype...   353   6e-98
Alignment   gi|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Su...   304   5e-83
Alignment   gi|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polype...   187   5e-48
Alignment   gi|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-l...   165   3e-41
Alignment   gi|XP_003359213.1| PREDICTED: hypothetical protein LOC100623670...   135   2e-32
Alignment   gi|XP_003359211.1| PREDICTED: hypothetical protein LOC100622797...   107   7e-24
Alignment   gi|XP_003354777.1| PREDICTED: ig kappa chain V-I region HK102-l...    86   3e-17
Alignment   gi|XP_003354776.1| PREDICTED: ig kappa chain V-I region HK102-l...    86   3e-17
Alignment   gi|XP_003354780.1| PREDICTED: ig kappa chain V-II region RPMI 6...    81   7e-16
Alignment   gi|XP_003354778.1| PREDICTED: ig kappa chain V-II region RPMI 6...    79   3e-15

>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
           scrofa].
          Length = 233

 Score =  353 bits (907), Expect = 6e-98
 Identities = 181/233 (77%), Positives = 190/233 (81%), Gaps = 2/233 (0%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF-VYAANWYQQKPGQ 218
           MAWT         CTGYVASSQLTQ PGVSVSLGGTASI C G NF  Y A+WY+QKPGQ
Sbjct: 1   MAWTPLLLPLLSLCTGYVASSQLTQPPGVSVSLGGTASITCQGGNFGSYYAHWYKQKPGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAP-FGG 395
           +P+LVIY  + R  GIP+RFSGS SGN+ATLTISGAQAEDEADYYCQS+D SD  P FG 
Sbjct: 61  SPMLVIYEYNKRASGIPDRFSGSKSGNTATLTISGAQAEDEADYYCQSSDDSDAGPLFGR 120

Query: 396 GTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGV 575
           GT L+VL QPKA PTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAG TTVTQGV
Sbjct: 121 GTRLSVLRQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQGV 180

Query: 576 ETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           ETTKPSKQSNNK            DWKSSSGFTCQVTHEGTIVEKTVTPSECA
Sbjct: 181 ETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHEGTIVEKTVTPSECA 233


>ref|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Sus scrofa].
          Length = 234

 Score =  304 bits (778), Expect = 5e-83
 Identities = 156/235 (66%), Positives = 171/235 (72%), Gaps = 4/235 (1%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYAAN----WYQQK 209
           MAWT          +G V S  + Q P +SVSLGGT ++ C   +    ++    W+QQ 
Sbjct: 1   MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSLGGTVTLTCAFSSGSVTSSDYPGWFQQT 59

Query: 210 PGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPF 389
           PGQ P  VIY  + RP G+P RFSG+ SGN ATLTI+GAQAEDEADY+C    S     F
Sbjct: 60  PGQPPRTVIYSTNSRPTGVPSRFSGAISGNKATLTITGAQAEDEADYFCALRKSGGTVTF 119

Query: 390 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQ 569
           GGGTH+TVLGQPKA PTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAG TTVTQ
Sbjct: 120 GGGTHVTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQ 179

Query: 570 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           GVETTKPSKQSNNK            DWKSSSGFTCQVTHEGTIVEKTVTPSECA
Sbjct: 180 GVETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHEGTIVEKTVTPSECA 234


>ref|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
           scrofa].
          Length = 211

 Score =  187 bits (476), Expect = 5e-48
 Identities = 90/116 (77%), Positives = 95/116 (81%)
 Frame = +3

Query: 387 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 566
           FGGGT LTVLGQPKA PTV LFPPS EEL TNKATLVCLISDFYPGAVTVTWKAG TT+T
Sbjct: 96  FGGGTRLTVLGQPKAAPTVTLFPPSPEELSTNKATLVCLISDFYPGAVTVTWKAGGTTIT 155

Query: 567 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
           QGV+T++PSKQSNNK            DWKSSSGFTCQVTH+G  VEKTV PSECA
Sbjct: 156 QGVDTSQPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHQGNTVEKTVMPSECA 211


>ref|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-like [Sus scrofa].
          Length = 179

 Score =  165 bits (418), Expect = 3e-41
 Identities = 86/122 (70%), Positives = 96/122 (78%), Gaps = 3/122 (2%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF-VYAANWYQQKPGQ 218
           MAWT         CTGYVASS+LTQ PGVSVSLGGTASIAC GDNF  Y A+WYQQKPGQ
Sbjct: 1   MAWTPLLLPLLSLCTGYVASSKLTQPPGVSVSLGGTASIACQGDNFGSYYAHWYQQKPGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS--DNAPFG 392
           +P+LVIY  + R  GIP+RFSGS SGN+ATLTISGAQAEDEADYYCQS+D S   ++  G
Sbjct: 61  SPMLVIYEYNKRASGIPDRFSGSKSGNTATLTISGAQAEDEADYYCQSSDDSYTPHSDTG 120

Query: 393 GG 398
           GG
Sbjct: 121 GG 122


>ref|XP_003359213.1| PREDICTED: hypothetical protein LOC100623670 [Sus scrofa].
          Length = 276

 Score =  135 bits (341), Expect = 2e-32
 Identities = 76/135 (56%), Positives = 87/135 (64%), Gaps = 3/135 (2%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
           MAW          CTG VAS ++TQ P VSV+ G  ASI C G+N       WYQQKPGQ
Sbjct: 1   MAWIPLLLGLLAHCTGSVASYEVTQPPSVSVNPGQRASITCEGNNIGRKDIQWYQQKPGQ 60

Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS--DNAPFG 392
           AP+L IY  + RP GIPERFS S SGN+ATLTISGAQAEDEADYYCQS D S   ++  G
Sbjct: 61  APVLFIYEDTNRPSGIPERFSASKSGNTATLTISGAQAEDEADYYCQSYDDSYTPHSDTG 120

Query: 393 GGTHLTVLGQPKATP 437
           GG      G+P+  P
Sbjct: 121 GG------GRPRFAP 129



 Score =  102 bits (254), Expect = 3e-22
 Identities = 50/50 (100%), Positives = 50/50 (100%)
 Frame = +3

Query: 204 QKPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYY 353
           QKPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYY
Sbjct: 145 QKPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYY 194


>ref|XP_003359211.1| PREDICTED: hypothetical protein LOC100622797 [Sus scrofa].
          Length = 484

 Score =  107 bits (268), Expect = 7e-24
 Identities = 59/118 (50%), Positives = 73/118 (61%), Gaps = 4/118 (3%)
 Frame = +3

Query: 15  RGRAQGTSTMAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIAC-LGDNFVYAA 191
           R R +   TMAWT          +G V S  + Q P +SVSLGGT ++ C      V ++
Sbjct: 21  RPRPRSVPTMAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSLGGTVTLTCAFSSGSVTSS 79

Query: 192 N---WYQQKPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYC 356
           N   WYQQ PGQ P  +IY  + RP G+P RFSG+ SGN ATLTI+GAQAEDEADY+C
Sbjct: 80  NYPSWYQQTPGQPPRQLIYSTNSRPTGVPSRFSGAISGNKATLTITGAQAEDEADYFC 137



 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 57/160 (35%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
 Frame = +3

Query: 42  MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVY----AANWYQQK 209
           +AW+         CTG  A + LTQ P  S SLG   +++C G +       + NW Q  
Sbjct: 203 VAWSPLLLTLLAHCTGSWAQAVLTQPPSESGSLGQRVTLSCTGSSSNIGGGNSVNWSQPL 262

Query: 210 PGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPF 389
           PG+ P  V    +L  +  P++FSG  SG+S TLTI+G QAED+A+YYC +   S + P 
Sbjct: 263 PGKVPRSVFTYANLMAIAAPDQFSGFKSGSSGTLTITGLQAEDDAEYYCTAGGDSLDGP- 321

Query: 390 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLIS 509
              T     GQ +  P V   P     LG     ++C+IS
Sbjct: 322 ---TVPQARGQVRPKPAV---PQPGGSLG---RAILCIIS 352


>ref|XP_003354777.1| PREDICTED: ig kappa chain V-I region HK102-like [Sus scrofa].
          Length = 121

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 48/98 (48%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
 Frame = +3

Query: 87  GYVASSQLTQVPG-VSVSLGGTASIACLGDNFVYA-ANWYQQKPGQAPILVIYGGSLRPL 260
           G  ++ QLTQ P  ++ SLG T SI C     +     WYQQ+ G+AP L+IY  S    
Sbjct: 19  GARSAIQLTQSPASLAASLGDTVSITCRASQSINKWLAWYQQQAGKAPKLLIYSASTLQS 78

Query: 261 GIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
           G+P RF GS SG   TLTISG QAED A YYCQ   S+
Sbjct: 79  GVPSRFKGSGSGTDFTLTISGLQAEDVATYYCQQHHSA 116


>ref|XP_003354776.1| PREDICTED: ig kappa chain V-I region HK102-like [Sus scrofa].
          Length = 121

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 48/98 (48%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
 Frame = +3

Query: 87  GYVASSQLTQVPG-VSVSLGGTASIACLGDNFVYA-ANWYQQKPGQAPILVIYGGSLRPL 260
           G  ++ QLTQ P  ++ SLG T SI C     +     WYQQ+ G+AP L+IY  S    
Sbjct: 19  GARSAIQLTQSPASLAASLGDTVSITCRASQSINKWLAWYQQQAGKAPKLLIYSASTLQS 78

Query: 261 GIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
           G+P RF GS SG   TLTISG QAED A YYCQ   S+
Sbjct: 79  GVPSRFKGSGSGTDFTLTISGLQAEDVATYYCQQHHSA 116


>ref|XP_003354780.1| PREDICTED: ig kappa chain V-II region RPMI 6410-like [Sus scrofa].
          Length = 194

 Score = 81.3 bits (199), Expect = 7e-16
 Identities = 47/95 (49%), Positives = 58/95 (61%), Gaps = 6/95 (6%)
 Frame = +3

Query: 108 LTQVP-GVSVSLGGTASIACLGDNFV--YAAN---WYQQKPGQAPILVIYGGSLRPLGIP 269
           LTQ P  +SVS G  ASI+C     +  Y+ N   WYQQKPGQ+P L+IY  + +  G+P
Sbjct: 24  LTQSPLSLSVSPGAPASISCRSSQSLESYSYNFLSWYQQKPGQSPRLLIYFATNKASGVP 83

Query: 270 ERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
           +RFSGS SG   TL IS  +AED   YYCQ    S
Sbjct: 84  DRFSGSGSGTDFTLKISRVEAEDAGVYYCQQNKES 118


>ref|XP_003354778.1| PREDICTED: ig kappa chain V-II region RPMI 6410-like [Sus scrofa].
          Length = 126

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 46/93 (49%), Positives = 56/93 (60%), Gaps = 10/93 (10%)
 Frame = +3

Query: 108 LTQVP-GVSVSLGGTASIAC---------LGDNFVYAANWYQQKPGQAPILVIYGGSLRP 257
           LTQ P  +SVS G  ASI+C          G N++   NWYQQKPGQ+P L+IY  + R 
Sbjct: 24  LTQTPLSLSVSPGEPASISCRSTQSLRGSYGKNYL---NWYQQKPGQSPKLLIYWATNRA 80

Query: 258 LGIPERFSGSSSGNSATLTISGAQAEDEADYYC 356
            G+P+RFSGS SG   TL I   +AED   YYC
Sbjct: 81  SGVPDRFSGSRSGTDFTLKIIRLEAEDAGVYYC 113


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,198,896
Number of extensions: 800360
Number of successful extensions: 4046
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 3999
Number of HSP's successfully gapped: 19
Length of query: 306
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 207
Effective length of database: 8,879,129
Effective search space: 1837979703
Effective search space used: 1837979703
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000611
         (919 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                         880   0.0  

>Sscrofa_Chr14 
||          Length = 153851969

 Score =  880 bits (444), Expect = 0.0
 Identities = 450/452 (99%)
 Strand = Plus / Plus

                                                                            
Query: 417      ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 476
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539635 ggtcagcccaaggccgctcccacggtcaacctcttcccgccctcctctgaggagctcggc 52539694

                                                                            
Query: 477      accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 536
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539695 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 52539754

                                                                            
Query: 537      acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 596
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539755 acctggaaggcaggcggcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 52539814

                                                                            
Query: 597      cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 656
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539815 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 52539874

                                                                            
Query: 657      tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 716
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539875 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 52539934

                                                                            
Query: 717      acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 776
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539935 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 52539994

                                                                            
Query: 777      acccccgcgagggtctccccgcgaccctggtccagcccagcccttcctcctgcacctgtc 836
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539995 acccccgcgagggtctccccgcgaccctggtccagcccagcccttcctcctgcacctgtc 52540054

                                                
Query: 837      aactcccaataaaccgtcctccttgtcattca 868
                ||||||||||||||||||||||||||||||||
Sbjct: 52540055 aactcccaataaaccgtcctccttgtcattca 52540086



 Score =  862 bits (435), Expect = 0.0
 Identities = 450/454 (99%), Gaps = 2/454 (0%)
 Strand = Plus / Minus

                                                                            
Query: 417      ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 476
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423533 ggtcagcccaaggccgctcccacggtcaacctcttcccgccctcctctgaggagctcggc 52423474

                                                                            
Query: 477      accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 536
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423473 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 52423414

                                                                            
Query: 537      acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 596
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423413 acctggaaggcaggcggcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 52423354

                                                                            
Query: 597      cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 656
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423353 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 52423294

                                                                            
Query: 657      tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 716
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423293 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 52423234

                                                                            
Query: 717      acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 776
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423233 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 52423174

                                                                            
Query: 777      acccccgcgagggtct--ccccgcgaccctggtccagcccagcccttcctcctgcacctg 834
                ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423173 acccccgcgagggtctccccccgcgaccctggtccagcccagcccttcctcctgcacctg 52423114

                                                  
Query: 835      tcaactcccaataaaccgtcctccttgtcattca 868
                ||||||||||||||||||||||||||||||||||
Sbjct: 52423113 tcaactcccaataaaccgtcctccttgtcattca 52423080



 Score =  817 bits (412), Expect = 0.0
 Identities = 412/412 (100%)
 Strand = Plus / Plus

                                                                            
Query: 417      ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 476
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542749 ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 52542808

                                                                            
Query: 477      accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 536
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542809 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 52542868

                                                                            
Query: 537      acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 596
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542869 acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 52542928

                                                                            
Query: 597      cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 656
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542929 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 52542988

                                                                            
Query: 657      tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 716
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542989 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 52543048

                                                                            
Query: 717      acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 776
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52543049 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 52543108

                                                                    
Query: 777      acccccgcgagggtctccccgcgaccctggtccagcccagcccttcctcctg 828
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52543109 acccccgcgagggtctccccgcgaccctggtccagcccagcccttcctcctg 52543160



 Score =  656 bits (331), Expect = 0.0
 Identities = 425/456 (93%), Gaps = 9/456 (1%)
 Strand = Plus / Minus

                                                                            
Query: 417      ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 476
                ||||||||||||||| | ||||| ||||  ||||||||||||||| ||||||||||| ||
Sbjct: 53394324 ggtcagcccaaggccgcccccacagtcacgctcttcccgccctcccctgaggagctcagc 53394265

                                                                            
Query: 477      accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 536
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53394264 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 53394205

                                                                            
Query: 537      acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 596
                ||||||||||||||| |||||||| |||||||||||||||| ||| || |||||||||||
Sbjct: 53394204 acctggaaggcaggcggcaccaccatcacccagggcgtggatacctcccagccctcgaaa 53394145

                                                                            
Query: 597      cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 656
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53394144 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 53394085

                                                                            
Query: 657      tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 716
                ||||||||||||||||||||||||||||||||| |||||| ||  |||||||||||||||
Sbjct: 53394084 tcttccagcggcttcacctgccaggtcacccaccaggggaacacagtggagaagacagtg 53394025

                                                                            
Query: 717      acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 776
                | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53394024 atgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 53393965

                                                                            
Query: 777      acccccgcgagggtctcccc----gcgaccctggtccagcccagcccttcctcctgcacc 832
                || |||| ||||||||||||     | ||||||||     ||||||||||||||||||||
Sbjct: 53393964 actcccgtgagggtctccccctcaacaaccctggt-----ccagcccttcctcctgcacc 53393910

                                                    
Query: 833      tgtcaactcccaataaaccgtcctccttgtcattca 868
                |||||||||||||||||| |||||||||||||||||
Sbjct: 53393909 tgtcaactcccaataaactgtcctccttgtcattca 53393874



 Score =  353 bits (178), Expect = 1e-94
 Identities = 181/182 (99%)
 Strand = Plus / Plus

                                                                            
Query: 203      gcagaagcctggccaggcccccatcctggtcatctatggtggtagtctgcggcccttagg 262
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52405049 gcagaagcctggccaggcccccatcctggtcatctatggtggtagtctgcggcccttagg 52405108

                                                                            
Query: 263      gatccctgagcggttctctgggtccagctcagggaattcggccaccctgaccatcagcgg 322
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52405109 gatccctgagcggttctctgggtccagctcagggaattcggccaccctgaccatcagcgg 52405168

                                                                            
Query: 323      ggcccaggctgaggacgaggccgactactactgtcagtcagctgacagcagtgataatgc 382
                |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 52405169 ggcccaggctgaggacgaggccgactactactgtcagtcagctgacagcattgataatgc 52405228

                  
Query: 383      tc 384
                ||
Sbjct: 52405229 tc 52405230



 Score =  252 bits (127), Expect = 3e-64
 Identities = 243/281 (86%), Gaps = 3/281 (1%)
 Strand = Plus / Plus

                                                                            
Query: 85       caggttatgtggcctcttctcagctgactcaggtcccgggggtgtctgtgtccttgggag 144
                |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||
Sbjct: 52392954 caggttatgtggcctcttctaagctgactcagcccccgggggtgtctgtgtccttgggag 52393013

                                                                            
Query: 145      ggacggccagcatcgcctgcctaggagacaactttg---tctatgcagccaactggtacc 201
                ||||||||||||||||||||| ||||||||||||||     |||   ||  |||||||||
Sbjct: 52393014 ggacggccagcatcgcctgccaaggagacaactttggaagttattatgctcactggtacc 52393073

                                                                            
Query: 202      agcagaagcctggccaggcccccatcctggtcatctatggtggtagtctgcggcccttag 261
                ||||||||||||||||| ||||||| |||||||| ||||     |    | |  ||| ||
Sbjct: 52393074 agcagaagcctggccagtcccccatgctggtcatttatgaatacaacaagagagcctcag 52393133

                                                                            
Query: 262      ggatccctgagcggttctctgggtccagctcagggaattcggccaccctgaccatcagcg 321
                ||||||| || ||||||||||||||||  || |||||  | |||||||||||||||||||
Sbjct: 52393134 ggatcccggaccggttctctgggtccaagtcggggaacaccgccaccctgaccatcagcg 52393193

                                                         
Query: 322      gggcccaggctgaggacgaggccgactactactgtcagtca 362
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 52393194 gggcccaggctgaggacgaggccgactactactgtcagtca 52393234



 Score =  234 bits (118), Expect = 7e-59
 Identities = 172/190 (90%)
 Strand = Plus / Plus

                                                                            
Query: 195      tggtaccagcagaagcctggccaggcccccatcctggtcatctatggtggtagtctgcgg 254
                ||||||||||||||||| |||||||||||| | ||| |||| |||   |  |||  ||||
Sbjct: 52398533 tggtaccagcagaagccaggccaggcccccctgctgctcatttataaggacagtgagcgg 52398592

                                                                            
Query: 255      cccttagggatccctgagcggttctctgggtccagctcagggaattcggccaccctgacc 314
                |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 52398593 ccctcagggatccctgagcggttctctgggtccagctcagggaaaacggccaccctgacc 52398652

                                                                            
Query: 315      atcagcggggcccaggctgaggacgaggccgactactactgtcagtcagctgacagcagt 374
                ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 52398653 atcactggggcccaggctgaggacgaggccgactactactgtcagtcagctgacagcatt 52398712

                          
Query: 375      gataatgctc 384
                ||||||||||
Sbjct: 52398713 gataatgctc 52398722



 Score =  182 bits (92), Expect = 2e-43
 Identities = 235/280 (83%), Gaps = 7/280 (2%)
 Strand = Plus / Plus

                                                                            
Query: 85       caggttatgtggcctcttctcagctgactcaggtcccgggggtgtctgtgtccttgggag 144
                |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||
Sbjct: 52384970 caggttatgtggcctcttctaagctgactcagcccccgggggtgtctgtgtccttgggag 52385029

                                                                            
Query: 145      ggacggccagcatcgcctgcctaggagacaactttg---tctatgcagccaactggtacc 201
                |||||||||||||| |||||| ||||| ||||||||     |||   ||  |||||||||
Sbjct: 52385030 ggacggccagcatcacctgccaaggagccaactttggaagttattatgctcactggtacc 52385089

                                                                            
Query: 202      agcagaagcctggccaggcccccatcctggtcatctatggtggtagtctgcg--gccctt 259
                ||||||||||||||||| ||||    |||||||| ||||    ||  ||| |     |||
Sbjct: 52385090 agcagaagcctggccagtcccctgagctggtcatttatg--aataccctgagatattctt 52385147

                                                                            
Query: 260      agggatccctgagcggttctctgggtccagctcagggaattcggccaccctgaccatcag 319
                |||| |||  ||||||||||||| ||||||  ||||  |  | |||||||||||||||||
Sbjct: 52385148 agggttcctggagcggttctctgtgtccagaacaggagacacagccaccctgaccatcag 52385207

                                                        
Query: 320      cggggcccaggctgaggacgaggccgactactactgtcag 359
                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 52385208 cggggcccaggctgaggacgaggccgactactactgtcag 52385247



 Score =  143 bits (72), Expect = 2e-31
 Identities = 144/168 (85%)
 Strand = Plus / Plus

                                                                            
Query: 195      tggtaccagcagaagcctggccaggcccccatcctggtcatctatggtggtagtctgcgg 254
                ||||||||||||||||| |||||||||||  | ||| |||||||||  |  |     |||
Sbjct: 52404640 tggtaccagcagaagccaggccaggcccctgtgctgttcatctatgaggacaccaaccgg 52404699

                                                                            
Query: 255      cccttagggatccctgagcggttctctgggtccagctcagggaattcggccaccctgacc 314
                |||| ||||||||||||||| |||||||  ||||  || |||||  | ||||||||||||
Sbjct: 52404700 ccctcagggatccctgagcgcttctctgcctccaagtcggggaacaccgccaccctgacc 52404759

                                                                
Query: 315      atcagcggggcccaggctgaggacgaggccgactactactgtcagtca 362
                ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52404760 atcagcggggcccaggctgaggacgaggccgactactactgtcagtca 52404807



 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                               
Query: 5        gctgagtctcagaggcagagctcagggcacctccaccatggcctgga 51
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52398197 gctgagtctcagaggcagagctcagggcacctccaccatggcctgga 52398243



 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                        
Query: 12       ctcagaggcagagctcagggcacctccaccatggcctgga 51
                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 52384746 ctcagaggcagagctcagggcacctccaccatggcctgga 52384785



 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                        
Query: 12       ctcagaggcagagctcagggcacctccaccatggcctgga 51
                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 52392730 ctcagaggcagagctcagggcacctccaccatggcctgga 52392769



 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                      
Query: 303      gccaccctgaccatcagcggggcccaggctgaggacgaggccgactactactgt 356
                |||||||| |||||||  ||||||||||||||||||||||||||||||| ||||
Sbjct: 52229265 gccaccctcaccatcacgggggcccaggctgaggacgaggccgactacttctgt 52229318



 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                      
Query: 303      gccaccctgaccatcagcggggcccaggctgaggacgaggccgactactactgt 356
                |||||||| |||||||  ||||||||||||||||||||||||||||||| ||||
Sbjct: 52246344 gccaccctcaccatcacgggggcccaggctgaggacgaggccgactacttctgt 52246397



 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                      
Query: 303      gccaccctgaccatcagcggggcccaggctgaggacgaggccgactactactgt 356
                |||||||| |||||||  ||||||||||||||||||||||||||||||| ||||
Sbjct: 52259331 gccaccctcaccatcacgggggcccaggctgaggacgaggccgactacttctgt 52259384



 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                                     
Query: 383      tcccttcggcggtgggacccatctgaccgtcctcggt 419
                |||||||||||||||||||||||||||||||||||||
Sbjct: 52421754 tcccttcggcggtgggacccatctgaccgtcctcggt 52421718



 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                               
Query: 303      gccaccctgaccatcagcggggcccaggctgaggacgaggccgacta 349
                |||||||| |||||||  |||||||||||||||||||||||||||||
Sbjct: 52117740 gccaccctcaccatcacgggggcccaggctgaggacgaggccgacta 52117786



 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                               
Query: 303      gccaccctgaccatcagcggggcccaggctgaggacgaggccgacta 349
                |||||||| |||||||  |||||||||||||||||||||||||||||
Sbjct: 52134924 gccaccctcaccatcacgggggcccaggctgaggacgaggccgacta 52134970



 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                               
Query: 303      gccaccctgaccatcagcggggcccaggctgaggacgaggccgacta 349
                |||||||| |||||||  |||||||||||||||||||||||||||||
Sbjct: 52205694 gccaccctcaccatcacgggggcccaggctgaggacgaggccgacta 52205740



 Score = 67.9 bits (34), Expect = 9e-09
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                  
Query: 307      ccctgaccatcagcggggcccaggctgaggacgaggccgactactactgt 356
                |||| |||||||  ||||||||||||||||||||||||||||||| ||||
Sbjct: 52274852 ccctcaccatcacgggggcccaggctgaggacgaggccgactacttctgt 52274901



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                                 
Query: 387      ttcggcggtgggacccatctgaccgtcctcggt 419
                |||||||||||||||||||||||||||||||||
Sbjct: 52424866 ttcggcggtgggacccatctgaccgtcctcggt 52424834



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                               
Query: 838      actcccaataaaccgtcctccttgtcattca 868
                |||||||||||||||||||||||||||||||
Sbjct: 52426220 actcccaataaaccgtcctccttgtcattca 52426190



 Score = 58.0 bits (29), Expect = 9e-06
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                 
Query: 387      ttcggcggtgggacccatctgaccgtcctcggt 419
                |||||||| ||||||||||||||||||||||||
Sbjct: 52541416 ttcggcggagggacccatctgaccgtcctcggt 52541448


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,888,875
Number of extensions: 204
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 27
Length of query: 919
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 898
Effective length of database: 2,808,413,156
Effective search space: 2521955014088
Effective search space used: 2521955014088
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)