Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000611
(919 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype... 283 1e-76
Alignment gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo... 261 8e-70
Alignment gi|XP_002694712.1| PREDICTED: immunoglobulin lambda-6a light ch... 142 4e-34
Alignment gi|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus]. 132 5e-31
Alignment gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus]. 127 2e-29
Alignment gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus]. 127 2e-29
Alignment gi|XP_001790304.2| PREDICTED: immunoglobulin iota chain-like, p... 117 1e-26
Alignment gi|XP_002694688.1| PREDICTED: immunoglobulin iota chain-like, p... 113 3e-25
Alignment gi|XP_002694708.1| PREDICTED: immunoglobulin iota chain-like [B... 112 6e-25
Alignment gi|XP_876407.2| PREDICTED: immunoglobin light chain VJ region, ... 105 6e-23
>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
taurus].
Length = 236
Score = 283 bits (724), Expect = 1e-76
Identities = 144/236 (61%), Positives = 168/236 (71%), Gaps = 5/236 (2%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF-VYAANWYQQKPGQ 218
MAWT CTG++ASSQLTQ P VSVSLG TASI C GD+ + +A+WYQQKPGQ
Sbjct: 1 MAWTPLLLPLLTLCTGHLASSQLTQPPAVSVSLGQTASITCQGDDLELLSAHWYQQKPGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAP---- 386
AP+LVIY GIP+RFSGS S +ATLTI GAQAEDEADYYCQSAD S
Sbjct: 61 APVLVIYADDNLASGIPDRFSGSKSDTTATLTIRGAQAEDEADYYCQSADISGPVSLCDL 120
Query: 387 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 566
FGGGT +TVLGQPK+ P+V LFPPS EEL NKATLVCLISDFYPG+VTV WKA +T+T
Sbjct: 121 FGGGTRVTVLGQPKSPPSVTLFPPSKEELSANKATLVCLISDFYPGSVTVAWKADGSTIT 180
Query: 567 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
+ V+TT+ SKQSN+K DWKS ++C+VTHEG+ V KTV S C+
Sbjct: 181 RNVKTTRASKQSNSKYAASSYLSLTDSDWKSKGSYSCEVTHEGSTVTKTVKTSACS 236
>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
Length = 235
Score = 261 bits (666), Expect = 8e-70
Identities = 133/235 (56%), Positives = 158/235 (67%), Gaps = 4/235 (1%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF---VYAANWYQQKP 212
MAW+ CTG A + LTQ VS SLG SI C G + +Y NWYQQ P
Sbjct: 1 MAWSPLLLTLVALCTGSWAQAVLTQPSSVSGSLGQRVSITCSGSSTNIGIYGVNWYQQVP 60
Query: 213 GQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDN-APF 389
G +IY RP G+P+RFSGS SGN+ATLTI+ QAEDEADY+C + D S N A F
Sbjct: 61 GSGLKTIIYEDKYRPSGVPDRFSGSKSGNTATLTINSLQAEDEADYFCAAGDYSVNTAVF 120
Query: 390 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQ 569
GGGT LTVLGQPK+ P+V LFPPS+EEL NKATLVCLISDFYPG+VTV WKA +T+T+
Sbjct: 121 GGGTTLTVLGQPKSPPSVTLFPPSTEELNGNKATLVCLISDFYPGSVTVVWKADGSTITR 180
Query: 570 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
VETT+ SKQSN+K DWKS ++C+VTHEG+ V KTV PSEC+
Sbjct: 181 NVETTRASKQSNSKYAASSYLSLTSSDWKSKGSYSCEVTHEGSTVTKTVKPSECS 235
>ref|XP_002694712.1| PREDICTED: immunoglobulin lambda-6a light chain variable
region-like [Bos taurus].
Length = 141
Score = 142 bits (358), Expect = 4e-34
Identities = 73/112 (65%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF-VYAANWYQQKPGQ 218
MAWT C G++ASSQLTQ P VSVSLG TASI C GD+ + +A+WYQQKPGQ
Sbjct: 1 MAWTPLLLPLLTLCAGHLASSQLTQPPAVSVSLGQTASITCQGDDLELLSAHWYQQKPGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
AP+LVIY GIP+RFSGS S +ATLTI GAQAEDEADYYCQSAD S
Sbjct: 61 APVLVIYADDNLASGIPDRFSGSKSDTTATLTIRGAQAEDEADYYCQSADIS 112
>ref|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].
Length = 260
Score = 132 bits (331), Expect = 5e-31
Identities = 63/116 (54%), Positives = 80/116 (68%)
Frame = +3
Query: 387 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 566
FG GT +T+ QPK P+V LFPPS+EEL T ATLVCLISDFYPG VTV WKA + VT
Sbjct: 145 FGSGTKVTIPDQPKFPPSVTLFPPSTEELSTYTATLVCLISDFYPGNVTVAWKADGSPVT 204
Query: 567 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
+GV T++ S+QS++K +WK S ++C+VTHEG+ V KTV PS C+
Sbjct: 205 RGVVTSQASQQSSSKYVASSYLTLTGSEWKPKSSYSCEVTHEGSTVTKTVKPSACS 260
>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 127 bits (318), Expect = 2e-29
Identities = 82/217 (37%), Positives = 115/217 (52%), Gaps = 8/217 (3%)
Frame = +3
Query: 105 QLTQVPG-VSVSLGGTASIACLGDNFVYAA-NWYQQKPGQAPILVIYGGSLRPLGIPERF 278
Q+TQ P +S SLG SI C + WYQQKPG+AP L+IY P P +F
Sbjct: 23 QVTQSPSSLSASLGDRVSITCQASQSIDTKLAWYQQKPGKAPKLLIYAIPRSPSWFPSQF 82
Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGGTHLTVLGQPKATPTVNLFPP 458
SGS G TLTIS +A+D A YYC S + N FG GT + + + A P+V LF P
Sbjct: 83 SGSGFGADFTLTISSLKADDIATYYCLSRNCCVNT-FGQGTKVEI-KRSDAEPSVFLFKP 140
Query: 459 SSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT----QGVETTKPSKQSNNKXXXXX 626
S E+L T ++VCL++DFYP + V WK T + Q T + SK+S
Sbjct: 141 SDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKKST--YSLSS 198
Query: 627 XXXXXXXDWKSSSGFTCQVTHEG--TIVEKTVTPSEC 731
+++S +TC+V+H+ T + K+ + +EC
Sbjct: 199 ILTLPSSEYQSHDAYTCEVSHKSLTTTLVKSFSKNEC 235
>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 127 bits (318), Expect = 2e-29
Identities = 82/217 (37%), Positives = 115/217 (52%), Gaps = 8/217 (3%)
Frame = +3
Query: 105 QLTQVPG-VSVSLGGTASIACLGDNFVYAA-NWYQQKPGQAPILVIYGGSLRPLGIPERF 278
Q+TQ P +S SLG SI C + WYQQKPG+AP L+IY P P +F
Sbjct: 23 QVTQSPSSLSASLGDRVSITCQASQSIDTKLAWYQQKPGKAPKLLIYAIPRSPSWFPSQF 82
Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGGTHLTVLGQPKATPTVNLFPP 458
SGS G TLTIS +A+D A YYC S + N FG GT + + + A P+V LF P
Sbjct: 83 SGSGFGADFTLTISSLKADDIATYYCLSRNCCVNT-FGQGTKVEI-KRSDAEPSVFLFKP 140
Query: 459 SSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT----QGVETTKPSKQSNNKXXXXX 626
S E+L T ++VCL++DFYP + V WK T + Q T + SK+S
Sbjct: 141 SDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKKST--YSLSS 198
Query: 627 XXXXXXXDWKSSSGFTCQVTHEG--TIVEKTVTPSEC 731
+++S +TC+V+H+ T + K+ + +EC
Sbjct: 199 ILTLPSSEYQSHDAYTCEVSHKSLTTTLVKSFSKNEC 235
>ref|XP_001790304.2| PREDICTED: immunoglobulin iota chain-like, partial [Bos taurus].
Length = 218
Score = 117 bits (293), Expect = 1e-26
Identities = 64/128 (50%), Positives = 77/128 (60%), Gaps = 4/128 (3%)
Frame = +3
Query: 3 RLSLRGRAQGTSTMAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFV 182
R+ R A STMAW+ CTG A + LTQ P VS SLG +I+C G +
Sbjct: 40 RVKGRQNALTVSTMAWSPLLLTLVTLCTGSWAQAVLTQPPSVSGSLGQRVTISCTGSSSN 99
Query: 183 YAAN----WYQQKPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADY 350
WYQQ PG AP +IY + RP G+P+RFSGS SGN+ATLTIS QAEDEADY
Sbjct: 100 IGGGNCVGWYQQIPGSAPKTLIYRSTSRPSGVPDRFSGSRSGNTATLTISSLQAEDEADY 159
Query: 351 YCQSADSS 374
YC + +SS
Sbjct: 160 YCATYESS 167
>ref|XP_002694688.1| PREDICTED: immunoglobulin iota chain-like, partial [Bos taurus].
Length = 169
Score = 113 bits (282), Expect = 3e-25
Identities = 60/118 (50%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Frame = +3
Query: 36 STMAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA---ANWYQQ 206
STMAW+ CTG A + LTQ VS SLG SI C G + +W+QQ
Sbjct: 2 STMAWSPLFLTLVALCTGSWAQAVLTQPSSVSGSLGQRVSITCTGSSSNVGNGYVSWFQQ 61
Query: 207 KPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDN 380
PG AP +IYG + R G+P+RFSGS SGN+ATLTIS QAEDEADY+C + DSS +
Sbjct: 62 IPGSAPRTLIYGDTSRASGVPDRFSGSRSGNTATLTISSLQAEDEADYFCAAGDSSSS 119
>ref|XP_002694708.1| PREDICTED: immunoglobulin iota chain-like [Bos taurus].
Length = 153
Score = 112 bits (279), Expect = 6e-25
Identities = 59/115 (51%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYAAN----WYQQK 209
MAW+ CTG A + LTQ P VS SLG +I+C G + WYQQ
Sbjct: 1 MAWSPLLLTLVTLCTGSWAQAVLTQPPSVSGSLGQRVTISCTGSSSNIGGGNCVGWYQQI 60
Query: 210 PGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
PG AP +IY + RP G+P+RFSGS SGN+ATLTIS QAEDEADYYC + +SS
Sbjct: 61 PGSAPKTLIYRSTSRPSGVPDRFSGSRSGNTATLTISSLQAEDEADYYCATYESS 115
>ref|XP_876407.2| PREDICTED: immunoglobin light chain VJ region, partial [Bos
taurus].
Length = 126
Score = 105 bits (262), Expect = 6e-23
Identities = 61/118 (51%), Positives = 71/118 (60%), Gaps = 4/118 (3%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA---ANWYQQKP 212
MAW+ TG A + LTQ VS SLG SI C G + +WYQ P
Sbjct: 1 MAWSPLLLTLVALFTGSWAQAVLTQPSSVSGSLGQRVSITCSGSSSNVGNGYVSWYQLIP 60
Query: 213 GQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSA-DSSDNA 383
G AP +IYG + R G+P+RFSGS SGN+ATLTIS QAEDEADY+C SA DSS NA
Sbjct: 61 GSAPRTLIYGDTSRASGVPDRFSGSRSGNTATLTISSLQAEDEADYFCASAEDSSSNA 118
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,197,064
Number of extensions: 1137330
Number of successful extensions: 6260
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 6166
Number of HSP's successfully gapped: 30
Length of query: 306
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,306,398
Effective search space: 2918505192
Effective search space used: 2918505192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000611
(919 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855821.1| PREDICTED: similar to Immunoglobulin lambda-lik... 290 1e-78
Alignment gi|XP_855777.1| PREDICTED: similar to Immunoglobulin lambda-lik... 278 5e-75
Alignment gi|XP_848579.1| PREDICTED: similar to Immunoglobulin lambda-lik... 278 7e-75
Alignment gi|XP_856398.1| PREDICTED: similar to Immunoglobulin lambda-lik... 276 1e-74
Alignment gi|XP_856315.1| PREDICTED: similar to Immunoglobulin lambda-lik... 276 1e-74
Alignment gi|XP_856144.1| PREDICTED: similar to Immunoglobulin lambda-lik... 276 1e-74
Alignment gi|XP_856357.1| PREDICTED: similar to Immunoglobulin lambda-lik... 276 2e-74
Alignment gi|XP_856188.1| PREDICTED: similar to Immunoglobulin lambda-lik... 276 3e-74
Alignment gi|XP_856273.1| PREDICTED: similar to Immunoglobulin lambda-lik... 275 3e-74
Alignment gi|XP_856233.1| PREDICTED: similar to Immunoglobulin lambda-lik... 275 4e-74
>ref|XP_855821.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 3 [Canis familiaris].
Length = 231
Score = 290 bits (742), Expect = 1e-78
Identities = 151/232 (65%), Positives = 168/232 (72%), Gaps = 1/232 (0%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF-VYAANWYQQKPGQ 218
MAWT CTG VAS LTQ+P +V+L A I C GDN + +WYQQK GQ
Sbjct: 1 MAWTHLLLSLLALCTGSVASYVLTQLPSKNVTLKQPAHITCGGDNIGSKSVHWYQQKLGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGG 398
AP+L+IY S RP GIPERFSG++SGN+ATLTISGA AEDEADYYCQ DSS FGGG
Sbjct: 61 APVLIIYYDSSRPTGIPERFSGANSGNTATLTISGALAEDEADYYCQVWDSSALV-FGGG 119
Query: 399 THLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGVE 578
THLTVLGQPKA+P+V LFPPSSEELG NKATLVCLISDFYP VTV WKA + VTQGVE
Sbjct: 120 THLTVLGQPKASPSVTLFPPSSEELGANKATLVCLISDFYPSGVTVAWKADGSPVTQGVE 179
Query: 579 TTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
TTKPSKQSNNK WKS S F+C VTHEG+ VEK V P+EC+
Sbjct: 180 TTKPSKQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHEGSTVEKKVAPAECS 231
>ref|XP_855777.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 2 [Canis familiaris].
Length = 233
Score = 278 bits (711), Expect = 5e-75
Identities = 144/233 (61%), Positives = 165/233 (70%), Gaps = 2/233 (0%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF-VYAANWYQQKPGQ 218
MAWT CTG VAS LTQ+P +V+L A I C GDN + +WYQQK GQ
Sbjct: 1 MAWTHLLLSLLALCTGSVASYVLTQLPSKNVTLKQPAHITCGGDNIGSKSVHWYQQKLGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNA-PFGG 395
AP+L+IY S RP GIPERFSG++SGN+ATLTISGA AEDEADYYCQ DSS + FG
Sbjct: 61 APVLIIYYDSSRPTGIPERFSGANSGNTATLTISGALAEDEADYYCQVWDSSGHCWVFGE 120
Query: 396 GTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGV 575
GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ QGV
Sbjct: 121 GTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGV 180
Query: 576 ETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
ETTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 ETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 233
>ref|XP_848579.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 1 [Canis familiaris].
Length = 233
Score = 278 bits (710), Expect = 7e-75
Identities = 143/233 (61%), Positives = 166/233 (71%), Gaps = 2/233 (0%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
MAWT CTG VAS LTQ P VSV+LG TASI C G++ +WYQQKPGQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS-DNAPFGG 395
AP+L+IY + +P GIPERFSG++SG++ATLTIS AQ DEADYYCQ +SS D FG
Sbjct: 61 APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWESSADCWVFGE 120
Query: 396 GTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGV 575
GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ QGV
Sbjct: 121 GTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGV 180
Query: 576 ETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
ETTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 ETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 233
>ref|XP_856398.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 17 [Canis familiaris].
Length = 234
Score = 276 bits (707), Expect = 1e-74
Identities = 142/234 (60%), Positives = 165/234 (70%), Gaps = 3/234 (1%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
MAWT CTG VAS LTQ P VSV+LG TASI C G++ +WYQQKPGQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNA--PFG 392
AP+L+IY + +P GIPERFSG++SG++ATLTIS AQ DEADYYCQ +SS FG
Sbjct: 61 APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWESSSKNCWVFG 120
Query: 393 GGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQG 572
GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ QG
Sbjct: 121 EGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQG 180
Query: 573 VETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
VETTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 VETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 234
>ref|XP_856315.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 15 [Canis familiaris].
Length = 232
Score = 276 bits (707), Expect = 1e-74
Identities = 141/232 (60%), Positives = 164/232 (70%), Gaps = 1/232 (0%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
MAWT CTG VAS LTQ P VSV+LG TASI C G++ +WYQQKPGQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGG 398
AP+L+IY + +P GIPERFSG++SG++ATLTIS AQ DEADYYCQ + S FG G
Sbjct: 61 APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWEISVCWVFGEG 120
Query: 399 THLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGVE 578
T LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ QGVE
Sbjct: 121 TQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGVE 180
Query: 579 TTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
TTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 TTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
>ref|XP_856144.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 11 [Canis familiaris].
Length = 232
Score = 276 bits (707), Expect = 1e-74
Identities = 140/232 (60%), Positives = 163/232 (70%), Gaps = 1/232 (0%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
MAWT CTG VAS LTQ P VSV+LG TASI C G++ +WYQQKPGQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGG 398
AP+L+IY + +P GIPERFSG++SG++ATLTIS AQ DEADYYCQ + FG G
Sbjct: 61 APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQKHRGAGCWVFGEG 120
Query: 399 THLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGVE 578
T LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ QGVE
Sbjct: 121 TQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGVE 180
Query: 579 TTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
TTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 TTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
>ref|XP_856357.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 16 [Canis familiaris].
Length = 232
Score = 276 bits (706), Expect = 2e-74
Identities = 140/232 (60%), Positives = 164/232 (70%), Gaps = 1/232 (0%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
MAWT CTG VAS LTQ P VSV+LG TASI C G++ +WYQQKPGQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGG 398
AP+L+IY + +P GIPERFSG++SG++ATLTIS AQ DEADYYCQ ++ FG G
Sbjct: 61 APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWENKYCWVFGEG 120
Query: 399 THLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGVE 578
T LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ QGVE
Sbjct: 121 TQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGVE 180
Query: 579 TTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
TTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 TTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
>ref|XP_856188.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 12 [Canis familiaris].
Length = 232
Score = 276 bits (705), Expect = 3e-74
Identities = 140/232 (60%), Positives = 162/232 (69%), Gaps = 1/232 (0%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
MAWT CTG VAS LTQ P VSV+LG TASI C G++ +WYQQKPGQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGG 398
AP+L+IY + +P GIPERFSG++SG++ATLTIS AQ DEADYYCQ FG G
Sbjct: 61 APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVHGGGGCWVFGEG 120
Query: 399 THLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGVE 578
T LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ QGVE
Sbjct: 121 TQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGVE 180
Query: 579 TTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
TTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 TTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
>ref|XP_856273.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 14 [Canis familiaris].
Length = 234
Score = 275 bits (704), Expect = 3e-74
Identities = 140/234 (59%), Positives = 165/234 (70%), Gaps = 3/234 (1%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
MAWT CTG VAS LTQ P VSV+LG TASI C G++ +WYQQKPGQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNA--PFG 392
AP+L+IY + +P GIPERFSG++SG++ATLTIS AQ DEADYYCQ + ++ FG
Sbjct: 61 APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQEMHTPESQCWVFG 120
Query: 393 GGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQG 572
GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ QG
Sbjct: 121 EGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQG 180
Query: 573 VETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
VETTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 VETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 234
>ref|XP_856233.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 13 [Canis familiaris].
Length = 232
Score = 275 bits (703), Expect = 4e-74
Identities = 140/232 (60%), Positives = 162/232 (69%), Gaps = 1/232 (0%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
MAWT CTG VAS LTQ P VSV+LG TASI C G++ +WYQQKPGQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCRGNSIGRKDVHWYQQKPGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPFGGG 398
AP+L+IY + +P GIPERFSG++SG++ATLTIS AQ DEADYYCQ FG G
Sbjct: 61 APLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQHYHHDYCWVFGEG 120
Query: 399 THLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGVE 578
T LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ QGVE
Sbjct: 121 TQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQGVE 180
Query: 579 TTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
TTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 181 TTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,591,350
Number of extensions: 1132601
Number of successful extensions: 6457
Number of sequences better than 1.0e-05: 225
Number of HSP's gapped: 6083
Number of HSP's successfully gapped: 236
Length of query: 306
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 204
Effective length of database: 15,474,232
Effective search space: 3156743328
Effective search space used: 3156743328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000611
(919 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Ho... 162 4e-40
Alignment gi|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isofor... 159 4e-39
Alignment gi|XP_003403579.1| PREDICTED: ig kappa chain V-III region VH-li... 89 7e-18
Alignment gi|XP_003403553.1| PREDICTED: ig kappa chain V-III region VH-li... 89 7e-18
Alignment gi|XP_003403802.1| PREDICTED: ig kappa chain V-III region VH-li... 89 7e-18
Alignment gi|XP_003403581.1| PREDICTED: ig kappa chain V-I region Walker-... 86 4e-17
Alignment gi|XP_003403580.1| PREDICTED: ig kappa chain V-I region Walker-... 85 1e-16
Alignment gi|XP_003403595.1| PREDICTED: ig kappa chain V-I region HK101-l... 85 1e-16
Alignment gi|XP_003403669.1| PREDICTED: hypothetical protein LOC642424 [H... 85 1e-16
Alignment gi|XP_003403801.1| PREDICTED: ig kappa chain V-III region VG-li... 84 2e-16
>ref|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Homo sapiens].
Length = 214
Score = 162 bits (410), Expect = 4e-40
Identities = 79/116 (68%), Positives = 86/116 (74%)
Frame = +3
Query: 387 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 566
FG GT +TVLGQPKA PTV LFPPSSEEL NKATLVCLISDFYPGAVTV WKA + V
Sbjct: 99 FGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVK 158
Query: 567 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
GVETTKPSKQSNNK WKS ++CQVTHEG+ VEKTV P+EC+
Sbjct: 159 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS 214
>ref|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isoform a precursor [Homo
sapiens].
Length = 213
Score = 159 bits (401), Expect = 4e-39
Identities = 77/126 (61%), Positives = 89/126 (70%)
Frame = +3
Query: 357 QSADSSDNAPFGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTV 536
QS +S FG GT LTVL QPKATP+V LFPPSSEEL NKATLVCL++DFYPG +TV
Sbjct: 88 QSKHNSVTHVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTV 147
Query: 537 TWKAGSTTVTQGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTV 716
TWKA T +TQGVE T PSKQSNNK W+S ++CQV HEG+ VEKTV
Sbjct: 148 TWKADGTPITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTV 207
Query: 717 TPSECA 734
P+EC+
Sbjct: 208 APAECS 213
>ref|XP_003403579.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
Length = 155
Score = 88.6 bits (218), Expect = 7e-18
Identities = 48/87 (55%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Frame = +3
Query: 108 LTQVPG-VSVSLGGTASIACLGDNFVYAA--NWYQQKPGQAPILVIYGGSLRPLGIPERF 278
+TQ P +S+S G A+++C V ++ +WYQQKPGQAP L+IYG S R GIP RF
Sbjct: 27 MTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQAPRLLIYGASTRATGIPARF 86
Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQ 359
SGS SG TLTIS Q ED A YYCQ
Sbjct: 87 SGSGSGTDFTLTISSLQPEDFAVYYCQ 113
>ref|XP_003403553.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
Length = 151
Score = 88.6 bits (218), Expect = 7e-18
Identities = 48/87 (55%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Frame = +3
Query: 108 LTQVPG-VSVSLGGTASIACLGDNFVYAA--NWYQQKPGQAPILVIYGGSLRPLGIPERF 278
+TQ P +S+S G A+++C V ++ +WYQQKPGQAP L+IYG S R GIP RF
Sbjct: 24 MTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQAPRLLIYGASTRATGIPARF 83
Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQ 359
SGS SG TLTIS Q ED A YYCQ
Sbjct: 84 SGSGSGTDFTLTISSLQPEDFAVYYCQ 110
>ref|XP_003403802.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
Length = 170
Score = 88.6 bits (218), Expect = 7e-18
Identities = 48/87 (55%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Frame = +3
Query: 108 LTQVPG-VSVSLGGTASIACLGDNFVYAA--NWYQQKPGQAPILVIYGGSLRPLGIPERF 278
+TQ P +S+S G A+++C V ++ +WYQQKPGQAP L+IYG S R GIP RF
Sbjct: 42 MTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQAPRLLIYGASTRATGIPARF 101
Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQ 359
SGS SG TLTIS Q ED A YYCQ
Sbjct: 102 SGSGSGTDFTLTISSLQPEDFAVYYCQ 128
>ref|XP_003403581.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
Length = 164
Score = 86.3 bits (212), Expect = 4e-17
Identities = 47/92 (51%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Frame = +3
Query: 105 QLTQVPG-VSVSLGGTASIACLGDNFVYA-ANWYQQKPGQAPILVIYGGSLRPLGIPERF 278
Q+TQ P +S S+GG +I C + NWYQQKPG+ P L+IY S GIP RF
Sbjct: 64 QMTQSPSSLSASVGGRVTITCRASQGISNNLNWYQQKPGKTPKLLIYAASSLQSGIPSRF 123
Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
S S SG TLTIS Q ED A YYCQ +DS+
Sbjct: 124 SDSGSGADYTLTISSLQPEDFAAYYCQQSDST 155
>ref|XP_003403580.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
Length = 202
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/92 (50%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = +3
Query: 105 QLTQVPG-VSVSLGGTASIACLGDNFVYA-ANWYQQKPGQAPILVIYGGSLRPLGIPERF 278
Q+TQ P +S S+G +I C + NWYQQKPG+ P L+IY S GIP RF
Sbjct: 102 QMTQSPSSLSASVGDRVTITCRASQGISNNLNWYQQKPGKTPKLLIYAASSLQSGIPSRF 161
Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
S S SG TLTIS Q ED A YYCQ +DS+
Sbjct: 162 SDSGSGTDYTLTISSLQPEDFATYYCQQSDST 193
>ref|XP_003403595.1| PREDICTED: ig kappa chain V-I region HK101-like [Homo sapiens].
Length = 153
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/92 (50%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = +3
Query: 105 QLTQVPG-VSVSLGGTASIAC-LGDNFVYAANWYQQKPGQAPILVIYGGSLRPLGIPERF 278
Q+TQ P +S S+GG +I C + NWYQQKP + P L+IY S GIP RF
Sbjct: 53 QMTQSPSSLSASVGGRVTITCRVSQGISNNLNWYQQKPRKTPKLLIYAASSLQSGIPSRF 112
Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
S S SG TLTIS Q ED A YYCQ +DS+
Sbjct: 113 SDSGSGTDYTLTISSLQPEDFATYYCQQSDSN 144
>ref|XP_003403669.1| PREDICTED: hypothetical protein LOC642424 [Homo sapiens].
Length = 436
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/92 (50%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = +3
Query: 105 QLTQVPG-VSVSLGGTASIACLGDNFVYA-ANWYQQKPGQAPILVIYGGSLRPLGIPERF 278
Q+TQ P +S S+G +I C + NWYQQKPG+ P L+IY S GIP RF
Sbjct: 336 QMTQSPSSLSASVGDRVTITCRASQGISNNLNWYQQKPGKTPKLLIYAASSLQSGIPSRF 395
Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
S S SG TLTIS Q ED A YYCQ +DS+
Sbjct: 396 SDSGSGTDYTLTISSLQPEDFATYYCQQSDST 427
>ref|XP_003403801.1| PREDICTED: ig kappa chain V-III region VG-like [Homo sapiens].
Length = 152
Score = 83.6 bits (205), Expect = 2e-16
Identities = 49/87 (56%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Frame = +3
Query: 108 LTQVPG-VSVSLGGTASIACLGDNFV--YAANWYQQKPGQAPILVIYGGSLRPLGIPERF 278
LTQ P +S+S G A+++C V Y A WYQQKPGQAP L+IY S R GIP RF
Sbjct: 24 LTQSPATLSLSPGERATLSCRASQSVSSYLA-WYQQKPGQAPRLLIYDASNRATGIPARF 82
Query: 279 SGSSSGNSATLTISGAQAEDEADYYCQ 359
SGS SG TLTIS + ED A YYCQ
Sbjct: 83 SGSGSGTDFTLTISSLEPEDFAVYYCQ 109
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,648,795
Number of extensions: 1088453
Number of successful extensions: 5846
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 5768
Number of HSP's successfully gapped: 18
Length of query: 306
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,934,836
Effective search space: 3046706544
Effective search space used: 3046706544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000611
(919 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mu... 140 2e-33
Alignment gi|NP_058679.1| immunoglobulin omega chain precursor [Mus muscu... 65 6e-11
Alignment gi|XP_357633.3| PREDICTED: similar to Ig kappa chain V-V region... 65 7e-11
Alignment gi|NP_058678.1| immunoglobulin iota chain precursor [Mus muscul... 64 2e-10
Alignment gi|NP_033540.1| pre-B lymphocyte protein 3 [Mus musculus]. 59 7e-09
>ref|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mus musculus].
Length = 209
Score = 140 bits (352), Expect = 2e-33
Identities = 65/116 (56%), Positives = 80/116 (68%)
Frame = +3
Query: 387 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 566
FGGGT LT+LGQPK+ P V LF PS + L NKATLVCL+S+FYPG + V WK VT
Sbjct: 94 FGGGTQLTILGQPKSDPLVTLFLPSLKNLQANKATLVCLVSEFYPGTLVVDWKVDGVPVT 153
Query: 567 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
QGVETT+PSKQ+NNK W S ++C+VTHEG VEK+V+P+EC+
Sbjct: 154 QGVETTQPSKQTNNKYMVSSYLTLISDQWMPHSRYSCRVTHEGNTVEKSVSPAECS 209
>ref|NP_058679.1| immunoglobulin omega chain precursor [Mus musculus].
Length = 142
Score = 65.5 bits (158), Expect = 6e-11
Identities = 45/115 (39%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDN----FVYAANWYQQK 209
MAWT TG + Q P S SLG T ++C N +Y+ WYQQ+
Sbjct: 1 MAWTSVLLMLLAHLTGCGPQPMVHQPPSASSSLGATIRLSCTLSNDHNIGIYSIYWYQQR 60
Query: 210 PGQAP--ILVIYGGSLRPLG--IPERFSGS--SSGNSATLTISGAQAEDEADYYC 356
PG P +L + S + G IP RFSGS ++ N L+IS Q EDEA YYC
Sbjct: 61 PGHPPRFLLRYFSHSDKHQGPDIPPRFSGSKDTARNLGYLSISELQPEDEAVYYC 115
>ref|XP_357633.3| PREDICTED: similar to Ig kappa chain V-V region L7 precursor [Mus
musculus].
Length = 216
Score = 65.1 bits (157), Expect = 7e-11
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Frame = +3
Query: 108 LTQVPG-VSVSLGGTASIACLGDNFVYA-ANWYQQKPGQAPILVIYGGSLRPLGIPERFS 281
+TQ P +SV+ G S++C + +WYQQK ++P L+I S GIP RFS
Sbjct: 107 MTQSPATLSVTPGDRVSLSCRASQSISDYLHWYQQKSHESPRLLIKYASQSISGIPSRFS 166
Query: 282 GSSSGNSATLTISGAQAEDEADYYCQSADS 371
GS SG+ TL+I+ + ED YYCQ+ S
Sbjct: 167 GSGSGSDFTLSINSVEPEDVGVYYCQNGHS 196
>ref|NP_058678.1| immunoglobulin iota chain precursor [Mus musculus].
Length = 142
Score = 63.9 bits (154), Expect = 2e-10
Identities = 45/115 (39%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF----VYAANWYQQK 209
MAWT TG + Q P S SLG T ++C N +Y+ WYQQ+
Sbjct: 1 MAWTSVLLMLLAYLTGCGPQPMVHQPPLASSSLGATIRLSCTLSNDHNIGIYSIYWYQQR 60
Query: 210 PGQAP--ILVIYGGSLRPLG--IPERFSGS--SSGNSATLTISGAQAEDEADYYC 356
PG P +L + S + G IP RFSGS ++ N L+IS Q EDEA YYC
Sbjct: 61 PGHPPRFLLRYFSHSDKHQGPDIPPRFSGSKDTTRNLGYLSISELQPEDEAVYYC 115
>ref|NP_033540.1| pre-B lymphocyte protein 3 [Mus musculus].
Length = 123
Score = 58.5 bits (140), Expect = 7e-09
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Frame = +3
Query: 108 LTQVPGVSVSLGGTASIACLGDNFVYAA-----NWYQQKPGQAPILVIYGGS---LRPLG 263
LTQ SV G A ++C ++ A +WYQQ+PG AP L+ Y RP
Sbjct: 23 LTQPDAFSVFPGQDAHLSCTINSQHATAGDIGVSWYQQQPGSAPHLLYYYAEEEHYRPAD 82
Query: 264 IPERFSGS--SSGNSATLTISGAQAEDEADYYCQSA 365
IP+RFS + ++ N+ LTIS ED+ADY+C A
Sbjct: 83 IPDRFSATVDAAHNACILTISPVLPEDDADYFCSIA 118
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,812,536
Number of extensions: 887984
Number of successful extensions: 4644
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4587
Number of HSP's successfully gapped: 5
Length of query: 306
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 205
Effective length of database: 12,583,923
Effective search space: 2579704215
Effective search space used: 2579704215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000611
(919 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 353 6e-98
Alignment gi|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Su... 304 5e-83
Alignment gi|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polype... 187 5e-48
Alignment gi|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-l... 165 3e-41
Alignment gi|XP_003359213.1| PREDICTED: hypothetical protein LOC100623670... 135 2e-32
Alignment gi|XP_003359211.1| PREDICTED: hypothetical protein LOC100622797... 107 7e-24
Alignment gi|XP_003354777.1| PREDICTED: ig kappa chain V-I region HK102-l... 86 3e-17
Alignment gi|XP_003354776.1| PREDICTED: ig kappa chain V-I region HK102-l... 86 3e-17
Alignment gi|XP_003354780.1| PREDICTED: ig kappa chain V-II region RPMI 6... 81 7e-16
Alignment gi|XP_003354778.1| PREDICTED: ig kappa chain V-II region RPMI 6... 79 3e-15
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 353 bits (907), Expect = 6e-98
Identities = 181/233 (77%), Positives = 190/233 (81%), Gaps = 2/233 (0%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF-VYAANWYQQKPGQ 218
MAWT CTGYVASSQLTQ PGVSVSLGGTASI C G NF Y A+WY+QKPGQ
Sbjct: 1 MAWTPLLLPLLSLCTGYVASSQLTQPPGVSVSLGGTASITCQGGNFGSYYAHWYKQKPGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAP-FGG 395
+P+LVIY + R GIP+RFSGS SGN+ATLTISGAQAEDEADYYCQS+D SD P FG
Sbjct: 61 SPMLVIYEYNKRASGIPDRFSGSKSGNTATLTISGAQAEDEADYYCQSSDDSDAGPLFGR 120
Query: 396 GTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQGV 575
GT L+VL QPKA PTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAG TTVTQGV
Sbjct: 121 GTRLSVLRQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQGV 180
Query: 576 ETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
ETTKPSKQSNNK DWKSSSGFTCQVTHEGTIVEKTVTPSECA
Sbjct: 181 ETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHEGTIVEKTVTPSECA 233
>ref|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Sus scrofa].
Length = 234
Score = 304 bits (778), Expect = 5e-83
Identities = 156/235 (66%), Positives = 171/235 (72%), Gaps = 4/235 (1%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYAAN----WYQQK 209
MAWT +G V S + Q P +SVSLGGT ++ C + ++ W+QQ
Sbjct: 1 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSLGGTVTLTCAFSSGSVTSSDYPGWFQQT 59
Query: 210 PGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPF 389
PGQ P VIY + RP G+P RFSG+ SGN ATLTI+GAQAEDEADY+C S F
Sbjct: 60 PGQPPRTVIYSTNSRPTGVPSRFSGAISGNKATLTITGAQAEDEADYFCALRKSGGTVTF 119
Query: 390 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQ 569
GGGTH+TVLGQPKA PTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAG TTVTQ
Sbjct: 120 GGGTHVTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQ 179
Query: 570 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
GVETTKPSKQSNNK DWKSSSGFTCQVTHEGTIVEKTVTPSECA
Sbjct: 180 GVETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHEGTIVEKTVTPSECA 234
>ref|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 211
Score = 187 bits (476), Expect = 5e-48
Identities = 90/116 (77%), Positives = 95/116 (81%)
Frame = +3
Query: 387 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 566
FGGGT LTVLGQPKA PTV LFPPS EEL TNKATLVCLISDFYPGAVTVTWKAG TT+T
Sbjct: 96 FGGGTRLTVLGQPKAAPTVTLFPPSPEELSTNKATLVCLISDFYPGAVTVTWKAGGTTIT 155
Query: 567 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 734
QGV+T++PSKQSNNK DWKSSSGFTCQVTH+G VEKTV PSECA
Sbjct: 156 QGVDTSQPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHQGNTVEKTVMPSECA 211
>ref|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-like [Sus scrofa].
Length = 179
Score = 165 bits (418), Expect = 3e-41
Identities = 86/122 (70%), Positives = 96/122 (78%), Gaps = 3/122 (2%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNF-VYAANWYQQKPGQ 218
MAWT CTGYVASS+LTQ PGVSVSLGGTASIAC GDNF Y A+WYQQKPGQ
Sbjct: 1 MAWTPLLLPLLSLCTGYVASSKLTQPPGVSVSLGGTASIACQGDNFGSYYAHWYQQKPGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS--DNAPFG 392
+P+LVIY + R GIP+RFSGS SGN+ATLTISGAQAEDEADYYCQS+D S ++ G
Sbjct: 61 SPMLVIYEYNKRASGIPDRFSGSKSGNTATLTISGAQAEDEADYYCQSSDDSYTPHSDTG 120
Query: 393 GG 398
GG
Sbjct: 121 GG 122
>ref|XP_003359213.1| PREDICTED: hypothetical protein LOC100623670 [Sus scrofa].
Length = 276
Score = 135 bits (341), Expect = 2e-32
Identities = 76/135 (56%), Positives = 87/135 (64%), Gaps = 3/135 (2%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVYA-ANWYQQKPGQ 218
MAW CTG VAS ++TQ P VSV+ G ASI C G+N WYQQKPGQ
Sbjct: 1 MAWIPLLLGLLAHCTGSVASYEVTQPPSVSVNPGQRASITCEGNNIGRKDIQWYQQKPGQ 60
Query: 219 APILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS--DNAPFG 392
AP+L IY + RP GIPERFS S SGN+ATLTISGAQAEDEADYYCQS D S ++ G
Sbjct: 61 APVLFIYEDTNRPSGIPERFSASKSGNTATLTISGAQAEDEADYYCQSYDDSYTPHSDTG 120
Query: 393 GGTHLTVLGQPKATP 437
GG G+P+ P
Sbjct: 121 GG------GRPRFAP 129
Score = 102 bits (254), Expect = 3e-22
Identities = 50/50 (100%), Positives = 50/50 (100%)
Frame = +3
Query: 204 QKPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYY 353
QKPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYY
Sbjct: 145 QKPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYY 194
>ref|XP_003359211.1| PREDICTED: hypothetical protein LOC100622797 [Sus scrofa].
Length = 484
Score = 107 bits (268), Expect = 7e-24
Identities = 59/118 (50%), Positives = 73/118 (61%), Gaps = 4/118 (3%)
Frame = +3
Query: 15 RGRAQGTSTMAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIAC-LGDNFVYAA 191
R R + TMAWT +G V S + Q P +SVSLGGT ++ C V ++
Sbjct: 21 RPRPRSVPTMAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSLGGTVTLTCAFSSGSVTSS 79
Query: 192 N---WYQQKPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYC 356
N WYQQ PGQ P +IY + RP G+P RFSG+ SGN ATLTI+GAQAEDEADY+C
Sbjct: 80 NYPSWYQQTPGQPPRQLIYSTNSRPTGVPSRFSGAISGNKATLTITGAQAEDEADYFC 137
Score = 88.6 bits (218), Expect = 4e-18
Identities = 57/160 (35%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
Frame = +3
Query: 42 MAWTXXXXXXXXXCTGYVASSQLTQVPGVSVSLGGTASIACLGDNFVY----AANWYQQK 209
+AW+ CTG A + LTQ P S SLG +++C G + + NW Q
Sbjct: 203 VAWSPLLLTLLAHCTGSWAQAVLTQPPSESGSLGQRVTLSCTGSSSNIGGGNSVNWSQPL 262
Query: 210 PGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSSDNAPF 389
PG+ P V +L + P++FSG SG+S TLTI+G QAED+A+YYC + S + P
Sbjct: 263 PGKVPRSVFTYANLMAIAAPDQFSGFKSGSSGTLTITGLQAEDDAEYYCTAGGDSLDGP- 321
Query: 390 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLIS 509
T GQ + P V P LG ++C+IS
Sbjct: 322 ---TVPQARGQVRPKPAV---PQPGGSLG---RAILCIIS 352
>ref|XP_003354777.1| PREDICTED: ig kappa chain V-I region HK102-like [Sus scrofa].
Length = 121
Score = 85.9 bits (211), Expect = 3e-17
Identities = 48/98 (48%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Frame = +3
Query: 87 GYVASSQLTQVPG-VSVSLGGTASIACLGDNFVYA-ANWYQQKPGQAPILVIYGGSLRPL 260
G ++ QLTQ P ++ SLG T SI C + WYQQ+ G+AP L+IY S
Sbjct: 19 GARSAIQLTQSPASLAASLGDTVSITCRASQSINKWLAWYQQQAGKAPKLLIYSASTLQS 78
Query: 261 GIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
G+P RF GS SG TLTISG QAED A YYCQ S+
Sbjct: 79 GVPSRFKGSGSGTDFTLTISGLQAEDVATYYCQQHHSA 116
>ref|XP_003354776.1| PREDICTED: ig kappa chain V-I region HK102-like [Sus scrofa].
Length = 121
Score = 85.9 bits (211), Expect = 3e-17
Identities = 48/98 (48%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Frame = +3
Query: 87 GYVASSQLTQVPG-VSVSLGGTASIACLGDNFVYA-ANWYQQKPGQAPILVIYGGSLRPL 260
G ++ QLTQ P ++ SLG T SI C + WYQQ+ G+AP L+IY S
Sbjct: 19 GARSAIQLTQSPASLAASLGDTVSITCRASQSINKWLAWYQQQAGKAPKLLIYSASTLQS 78
Query: 261 GIPERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
G+P RF GS SG TLTISG QAED A YYCQ S+
Sbjct: 79 GVPSRFKGSGSGTDFTLTISGLQAEDVATYYCQQHHSA 116
>ref|XP_003354780.1| PREDICTED: ig kappa chain V-II region RPMI 6410-like [Sus scrofa].
Length = 194
Score = 81.3 bits (199), Expect = 7e-16
Identities = 47/95 (49%), Positives = 58/95 (61%), Gaps = 6/95 (6%)
Frame = +3
Query: 108 LTQVP-GVSVSLGGTASIACLGDNFV--YAAN---WYQQKPGQAPILVIYGGSLRPLGIP 269
LTQ P +SVS G ASI+C + Y+ N WYQQKPGQ+P L+IY + + G+P
Sbjct: 24 LTQSPLSLSVSPGAPASISCRSSQSLESYSYNFLSWYQQKPGQSPRLLIYFATNKASGVP 83
Query: 270 ERFSGSSSGNSATLTISGAQAEDEADYYCQSADSS 374
+RFSGS SG TL IS +AED YYCQ S
Sbjct: 84 DRFSGSGSGTDFTLKISRVEAEDAGVYYCQQNKES 118
>ref|XP_003354778.1| PREDICTED: ig kappa chain V-II region RPMI 6410-like [Sus scrofa].
Length = 126
Score = 79.0 bits (193), Expect = 3e-15
Identities = 46/93 (49%), Positives = 56/93 (60%), Gaps = 10/93 (10%)
Frame = +3
Query: 108 LTQVP-GVSVSLGGTASIAC---------LGDNFVYAANWYQQKPGQAPILVIYGGSLRP 257
LTQ P +SVS G ASI+C G N++ NWYQQKPGQ+P L+IY + R
Sbjct: 24 LTQTPLSLSVSPGEPASISCRSTQSLRGSYGKNYL---NWYQQKPGQSPKLLIYWATNRA 80
Query: 258 LGIPERFSGSSSGNSATLTISGAQAEDEADYYC 356
G+P+RFSGS SG TL I +AED YYC
Sbjct: 81 SGVPDRFSGSRSGTDFTLKIIRLEAEDAGVYYC 113
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,198,896
Number of extensions: 800360
Number of successful extensions: 4046
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 3999
Number of HSP's successfully gapped: 19
Length of query: 306
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 207
Effective length of database: 8,879,129
Effective search space: 1837979703
Effective search space used: 1837979703
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000611
(919 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 880 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 880 bits (444), Expect = 0.0
Identities = 450/452 (99%)
Strand = Plus / Plus
Query: 417 ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 476
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539635 ggtcagcccaaggccgctcccacggtcaacctcttcccgccctcctctgaggagctcggc 52539694
Query: 477 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539695 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 52539754
Query: 537 acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 596
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539755 acctggaaggcaggcggcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 52539814
Query: 597 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539815 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 52539874
Query: 657 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539875 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 52539934
Query: 717 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539935 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 52539994
Query: 777 acccccgcgagggtctccccgcgaccctggtccagcccagcccttcctcctgcacctgtc 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539995 acccccgcgagggtctccccgcgaccctggtccagcccagcccttcctcctgcacctgtc 52540054
Query: 837 aactcccaataaaccgtcctccttgtcattca 868
||||||||||||||||||||||||||||||||
Sbjct: 52540055 aactcccaataaaccgtcctccttgtcattca 52540086
Score = 862 bits (435), Expect = 0.0
Identities = 450/454 (99%), Gaps = 2/454 (0%)
Strand = Plus / Minus
Query: 417 ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 476
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423533 ggtcagcccaaggccgctcccacggtcaacctcttcccgccctcctctgaggagctcggc 52423474
Query: 477 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423473 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 52423414
Query: 537 acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 596
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423413 acctggaaggcaggcggcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 52423354
Query: 597 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423353 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 52423294
Query: 657 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423293 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 52423234
Query: 717 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423233 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 52423174
Query: 777 acccccgcgagggtct--ccccgcgaccctggtccagcccagcccttcctcctgcacctg 834
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423173 acccccgcgagggtctccccccgcgaccctggtccagcccagcccttcctcctgcacctg 52423114
Query: 835 tcaactcccaataaaccgtcctccttgtcattca 868
||||||||||||||||||||||||||||||||||
Sbjct: 52423113 tcaactcccaataaaccgtcctccttgtcattca 52423080
Score = 817 bits (412), Expect = 0.0
Identities = 412/412 (100%)
Strand = Plus / Plus
Query: 417 ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542749 ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 52542808
Query: 477 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542809 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 52542868
Query: 537 acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542869 acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 52542928
Query: 597 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542929 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 52542988
Query: 657 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542989 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 52543048
Query: 717 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52543049 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 52543108
Query: 777 acccccgcgagggtctccccgcgaccctggtccagcccagcccttcctcctg 828
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52543109 acccccgcgagggtctccccgcgaccctggtccagcccagcccttcctcctg 52543160
Score = 656 bits (331), Expect = 0.0
Identities = 425/456 (93%), Gaps = 9/456 (1%)
Strand = Plus / Minus
Query: 417 ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 476
||||||||||||||| | ||||| |||| ||||||||||||||| ||||||||||| ||
Sbjct: 53394324 ggtcagcccaaggccgcccccacagtcacgctcttcccgccctcccctgaggagctcagc 53394265
Query: 477 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53394264 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 53394205
Query: 537 acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 596
||||||||||||||| |||||||| |||||||||||||||| ||| || |||||||||||
Sbjct: 53394204 acctggaaggcaggcggcaccaccatcacccagggcgtggatacctcccagccctcgaaa 53394145
Query: 597 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53394144 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 53394085
Query: 657 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 716
||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||
Sbjct: 53394084 tcttccagcggcttcacctgccaggtcacccaccaggggaacacagtggagaagacagtg 53394025
Query: 717 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 776
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53394024 atgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 53393965
Query: 777 acccccgcgagggtctcccc----gcgaccctggtccagcccagcccttcctcctgcacc 832
|| |||| |||||||||||| | |||||||| ||||||||||||||||||||
Sbjct: 53393964 actcccgtgagggtctccccctcaacaaccctggt-----ccagcccttcctcctgcacc 53393910
Query: 833 tgtcaactcccaataaaccgtcctccttgtcattca 868
|||||||||||||||||| |||||||||||||||||
Sbjct: 53393909 tgtcaactcccaataaactgtcctccttgtcattca 53393874
Score = 353 bits (178), Expect = 1e-94
Identities = 181/182 (99%)
Strand = Plus / Plus
Query: 203 gcagaagcctggccaggcccccatcctggtcatctatggtggtagtctgcggcccttagg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52405049 gcagaagcctggccaggcccccatcctggtcatctatggtggtagtctgcggcccttagg 52405108
Query: 263 gatccctgagcggttctctgggtccagctcagggaattcggccaccctgaccatcagcgg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52405109 gatccctgagcggttctctgggtccagctcagggaattcggccaccctgaccatcagcgg 52405168
Query: 323 ggcccaggctgaggacgaggccgactactactgtcagtcagctgacagcagtgataatgc 382
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 52405169 ggcccaggctgaggacgaggccgactactactgtcagtcagctgacagcattgataatgc 52405228
Query: 383 tc 384
||
Sbjct: 52405229 tc 52405230
Score = 252 bits (127), Expect = 3e-64
Identities = 243/281 (86%), Gaps = 3/281 (1%)
Strand = Plus / Plus
Query: 85 caggttatgtggcctcttctcagctgactcaggtcccgggggtgtctgtgtccttgggag 144
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 52392954 caggttatgtggcctcttctaagctgactcagcccccgggggtgtctgtgtccttgggag 52393013
Query: 145 ggacggccagcatcgcctgcctaggagacaactttg---tctatgcagccaactggtacc 201
||||||||||||||||||||| |||||||||||||| ||| || |||||||||
Sbjct: 52393014 ggacggccagcatcgcctgccaaggagacaactttggaagttattatgctcactggtacc 52393073
Query: 202 agcagaagcctggccaggcccccatcctggtcatctatggtggtagtctgcggcccttag 261
||||||||||||||||| ||||||| |||||||| |||| | | | ||| ||
Sbjct: 52393074 agcagaagcctggccagtcccccatgctggtcatttatgaatacaacaagagagcctcag 52393133
Query: 262 ggatccctgagcggttctctgggtccagctcagggaattcggccaccctgaccatcagcg 321
||||||| || |||||||||||||||| || ||||| | |||||||||||||||||||
Sbjct: 52393134 ggatcccggaccggttctctgggtccaagtcggggaacaccgccaccctgaccatcagcg 52393193
Query: 322 gggcccaggctgaggacgaggccgactactactgtcagtca 362
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 52393194 gggcccaggctgaggacgaggccgactactactgtcagtca 52393234
Score = 234 bits (118), Expect = 7e-59
Identities = 172/190 (90%)
Strand = Plus / Plus
Query: 195 tggtaccagcagaagcctggccaggcccccatcctggtcatctatggtggtagtctgcgg 254
||||||||||||||||| |||||||||||| | ||| |||| ||| | ||| ||||
Sbjct: 52398533 tggtaccagcagaagccaggccaggcccccctgctgctcatttataaggacagtgagcgg 52398592
Query: 255 cccttagggatccctgagcggttctctgggtccagctcagggaattcggccaccctgacc 314
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 52398593 ccctcagggatccctgagcggttctctgggtccagctcagggaaaacggccaccctgacc 52398652
Query: 315 atcagcggggcccaggctgaggacgaggccgactactactgtcagtcagctgacagcagt 374
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 52398653 atcactggggcccaggctgaggacgaggccgactactactgtcagtcagctgacagcatt 52398712
Query: 375 gataatgctc 384
||||||||||
Sbjct: 52398713 gataatgctc 52398722
Score = 182 bits (92), Expect = 2e-43
Identities = 235/280 (83%), Gaps = 7/280 (2%)
Strand = Plus / Plus
Query: 85 caggttatgtggcctcttctcagctgactcaggtcccgggggtgtctgtgtccttgggag 144
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 52384970 caggttatgtggcctcttctaagctgactcagcccccgggggtgtctgtgtccttgggag 52385029
Query: 145 ggacggccagcatcgcctgcctaggagacaactttg---tctatgcagccaactggtacc 201
|||||||||||||| |||||| ||||| |||||||| ||| || |||||||||
Sbjct: 52385030 ggacggccagcatcacctgccaaggagccaactttggaagttattatgctcactggtacc 52385089
Query: 202 agcagaagcctggccaggcccccatcctggtcatctatggtggtagtctgcg--gccctt 259
||||||||||||||||| |||| |||||||| |||| || ||| | |||
Sbjct: 52385090 agcagaagcctggccagtcccctgagctggtcatttatg--aataccctgagatattctt 52385147
Query: 260 agggatccctgagcggttctctgggtccagctcagggaattcggccaccctgaccatcag 319
|||| ||| ||||||||||||| |||||| |||| | | |||||||||||||||||
Sbjct: 52385148 agggttcctggagcggttctctgtgtccagaacaggagacacagccaccctgaccatcag 52385207
Query: 320 cggggcccaggctgaggacgaggccgactactactgtcag 359
||||||||||||||||||||||||||||||||||||||||
Sbjct: 52385208 cggggcccaggctgaggacgaggccgactactactgtcag 52385247
Score = 143 bits (72), Expect = 2e-31
Identities = 144/168 (85%)
Strand = Plus / Plus
Query: 195 tggtaccagcagaagcctggccaggcccccatcctggtcatctatggtggtagtctgcgg 254
||||||||||||||||| ||||||||||| | ||| ||||||||| | | |||
Sbjct: 52404640 tggtaccagcagaagccaggccaggcccctgtgctgttcatctatgaggacaccaaccgg 52404699
Query: 255 cccttagggatccctgagcggttctctgggtccagctcagggaattcggccaccctgacc 314
|||| ||||||||||||||| ||||||| |||| || ||||| | ||||||||||||
Sbjct: 52404700 ccctcagggatccctgagcgcttctctgcctccaagtcggggaacaccgccaccctgacc 52404759
Query: 315 atcagcggggcccaggctgaggacgaggccgactactactgtcagtca 362
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52404760 atcagcggggcccaggctgaggacgaggccgactactactgtcagtca 52404807
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 5 gctgagtctcagaggcagagctcagggcacctccaccatggcctgga 51
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52398197 gctgagtctcagaggcagagctcagggcacctccaccatggcctgga 52398243
Score = 79.8 bits (40), Expect = 2e-12
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 12 ctcagaggcagagctcagggcacctccaccatggcctgga 51
||||||||||||||||||||||||||||||||||||||||
Sbjct: 52384746 ctcagaggcagagctcagggcacctccaccatggcctgga 52384785
Score = 79.8 bits (40), Expect = 2e-12
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 12 ctcagaggcagagctcagggcacctccaccatggcctgga 51
||||||||||||||||||||||||||||||||||||||||
Sbjct: 52392730 ctcagaggcagagctcagggcacctccaccatggcctgga 52392769
Score = 75.8 bits (38), Expect = 4e-11
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 303 gccaccctgaccatcagcggggcccaggctgaggacgaggccgactactactgt 356
|||||||| ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 52229265 gccaccctcaccatcacgggggcccaggctgaggacgaggccgactacttctgt 52229318
Score = 75.8 bits (38), Expect = 4e-11
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 303 gccaccctgaccatcagcggggcccaggctgaggacgaggccgactactactgt 356
|||||||| ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 52246344 gccaccctcaccatcacgggggcccaggctgaggacgaggccgactacttctgt 52246397
Score = 75.8 bits (38), Expect = 4e-11
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 303 gccaccctgaccatcagcggggcccaggctgaggacgaggccgactactactgt 356
|||||||| ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 52259331 gccaccctcaccatcacgggggcccaggctgaggacgaggccgactacttctgt 52259384
Score = 73.8 bits (37), Expect = 1e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 383 tcccttcggcggtgggacccatctgaccgtcctcggt 419
|||||||||||||||||||||||||||||||||||||
Sbjct: 52421754 tcccttcggcggtgggacccatctgaccgtcctcggt 52421718
Score = 69.9 bits (35), Expect = 2e-09
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 303 gccaccctgaccatcagcggggcccaggctgaggacgaggccgacta 349
|||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 52117740 gccaccctcaccatcacgggggcccaggctgaggacgaggccgacta 52117786
Score = 69.9 bits (35), Expect = 2e-09
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 303 gccaccctgaccatcagcggggcccaggctgaggacgaggccgacta 349
|||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 52134924 gccaccctcaccatcacgggggcccaggctgaggacgaggccgacta 52134970
Score = 69.9 bits (35), Expect = 2e-09
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 303 gccaccctgaccatcagcggggcccaggctgaggacgaggccgacta 349
|||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 52205694 gccaccctcaccatcacgggggcccaggctgaggacgaggccgacta 52205740
Score = 67.9 bits (34), Expect = 9e-09
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 307 ccctgaccatcagcggggcccaggctgaggacgaggccgactactactgt 356
|||| ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 52274852 ccctcaccatcacgggggcccaggctgaggacgaggccgactacttctgt 52274901
Score = 65.9 bits (33), Expect = 4e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 387 ttcggcggtgggacccatctgaccgtcctcggt 419
|||||||||||||||||||||||||||||||||
Sbjct: 52424866 ttcggcggtgggacccatctgaccgtcctcggt 52424834
Score = 61.9 bits (31), Expect = 6e-07
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 838 actcccaataaaccgtcctccttgtcattca 868
|||||||||||||||||||||||||||||||
Sbjct: 52426220 actcccaataaaccgtcctccttgtcattca 52426190
Score = 58.0 bits (29), Expect = 9e-06
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 387 ttcggcggtgggacccatctgaccgtcctcggt 419
|||||||| ||||||||||||||||||||||||
Sbjct: 52541416 ttcggcggagggacccatctgaccgtcctcggt 52541448
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,888,875
Number of extensions: 204
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 27
Length of query: 919
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 898
Effective length of database: 2,808,413,156
Effective search space: 2521955014088
Effective search space used: 2521955014088
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)