Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000617
(784 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092344.1| 40S ribosomal protein S7 [Bos taurus]. 376 e-104
>ref|NP_001092344.1| 40S ribosomal protein S7 [Bos taurus].
Length = 194
Score = 376 bits (965), Expect = e-104
Identities = 194/194 (100%), Positives = 194/194 (100%)
Frame = +2
Query: 110 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI 289
MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI
Sbjct: 1 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI 60
Query: 290 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR 469
IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR
Sbjct: 61 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR 120
Query: 470 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 649
TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL
Sbjct: 121 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 180
Query: 650 TGKDVNFEFPEFQL 691
TGKDVNFEFPEFQL
Sbjct: 181 TGKDVNFEFPEFQL 194
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,848,500
Number of extensions: 773402
Number of successful extensions: 7133
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6075
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 161
Effective length of database: 14,372,574
Effective search space: 2313984414
Effective search space used: 2313984414
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000617
(784 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532859.1| PREDICTED: similar to 40S ribosomal protein S7 ... 376 e-104
Alignment gi|XP_855806.1| PREDICTED: similar to 40S ribosomal protein S7 ... 320 1e-87
Alignment gi|XP_855766.1| PREDICTED: similar to 40S ribosomal protein S7 ... 263 2e-70
Alignment gi|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familia... 61 1e-09
>ref|XP_532859.1| PREDICTED: similar to 40S ribosomal protein S7 (S8) isoform 1
[Canis familiaris].
Length = 194
Score = 376 bits (965), Expect = e-104
Identities = 194/194 (100%), Positives = 194/194 (100%)
Frame = +2
Query: 110 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI 289
MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI
Sbjct: 1 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI 60
Query: 290 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR 469
IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR
Sbjct: 61 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR 120
Query: 470 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 649
TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL
Sbjct: 121 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 180
Query: 650 TGKDVNFEFPEFQL 691
TGKDVNFEFPEFQL
Sbjct: 181 TGKDVNFEFPEFQL 194
>ref|XP_855806.1| PREDICTED: similar to 40S ribosomal protein S7 (S8) isoform 3
[Canis familiaris].
Length = 170
Score = 320 bits (819), Expect = 1e-87
Identities = 170/194 (87%), Positives = 170/194 (87%)
Frame = +2
Query: 110 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI 289
MFSSSAKIVKPNGEKPDEFESGISQ EIEVGGGRKAI
Sbjct: 1 MFSSSAKIVKPNGEKPDEFESGISQ------------------------EIEVGGGRKAI 36
Query: 290 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR 469
IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR
Sbjct: 37 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR 96
Query: 470 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 649
TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL
Sbjct: 97 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 156
Query: 650 TGKDVNFEFPEFQL 691
TGKDVNFEFPEFQL
Sbjct: 157 TGKDVNFEFPEFQL 170
>ref|XP_855766.1| PREDICTED: similar to 40S ribosomal protein S7 (S8) isoform 2
[Canis familiaris].
Length = 146
Score = 263 bits (671), Expect = 2e-70
Identities = 146/194 (75%), Positives = 146/194 (75%)
Frame = +2
Query: 110 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI 289
MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAK
Sbjct: 1 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAK----------- 49
Query: 290 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR 469
RRILPKPTRKSRTKNKQKRPRSR
Sbjct: 50 -------------------------------------RRILPKPTRKSRTKNKQKRPRSR 72
Query: 470 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 649
TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL
Sbjct: 73 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 132
Query: 650 TGKDVNFEFPEFQL 691
TGKDVNFEFPEFQL
Sbjct: 133 TGKDVNFEFPEFQL 146
>ref|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familiaris].
Length = 360
Score = 61.2 bits (147), Expect = 1e-09
Identities = 32/50 (64%), Positives = 39/50 (78%)
Frame = +2
Query: 134 VKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRK 283
+KP+G++ +F+SGI QAL ELE N D +A LRELN TAAKEIEVG G K
Sbjct: 1 MKPHGKRLGKFKSGIYQALHELERNWDPRAHLRELNATAAKEIEVGSGWK 50
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,828,691
Number of extensions: 746214
Number of successful extensions: 6905
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5692
Number of HSP's successfully gapped: 5
Length of query: 261
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 160
Effective length of database: 15,507,568
Effective search space: 2481210880
Effective search space used: 2481210880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000617
(784 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002.1| 40S ribosomal protein S7 [Homo sapiens]. 376 e-104
>ref|NP_001002.1| 40S ribosomal protein S7 [Homo sapiens].
Length = 194
Score = 376 bits (965), Expect = e-104
Identities = 194/194 (100%), Positives = 194/194 (100%)
Frame = +2
Query: 110 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI 289
MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI
Sbjct: 1 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI 60
Query: 290 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR 469
IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR
Sbjct: 61 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR 120
Query: 470 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 649
TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL
Sbjct: 121 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 180
Query: 650 TGKDVNFEFPEFQL 691
TGKDVNFEFPEFQL
Sbjct: 181 TGKDVNFEFPEFQL 194
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,226,855
Number of extensions: 726449
Number of successful extensions: 6877
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5670
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 161
Effective length of database: 15,000,764
Effective search space: 2415123004
Effective search space used: 2415123004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000617
(784 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035430.1| 40S ribosomal protein S7 [Mus musculus]. 376 e-104
>ref|NP_035430.1| 40S ribosomal protein S7 [Mus musculus].
Length = 194
Score = 376 bits (965), Expect = e-104
Identities = 194/194 (100%), Positives = 194/194 (100%)
Frame = +2
Query: 110 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI 289
MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI
Sbjct: 1 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI 60
Query: 290 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR 469
IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR
Sbjct: 61 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR 120
Query: 470 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 649
TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL
Sbjct: 121 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 180
Query: 650 TGKDVNFEFPEFQL 691
TGKDVNFEFPEFQL
Sbjct: 181 TGKDVNFEFPEFQL 194
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,966,911
Number of extensions: 604261
Number of successful extensions: 5428
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4582
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 162
Effective length of database: 12,643,995
Effective search space: 2048327190
Effective search space used: 2048327190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000617
(784 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,789,467
Number of extensions: 574402
Number of successful extensions: 5090
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 4124
Number of HSP's successfully gapped: 0
Length of query: 261
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 164
Effective length of database: 8,928,923
Effective search space: 1464343372
Effective search space used: 1464343372
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000617
(784 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 961 0.0
gb|JH118706.1| Sus scrofa unplaced genomic scaffold ChrUScaf1922 646 0.0
Sscrofa_Chr03 309 1e-81
Sscrofa_Chr13 305 2e-80
Sscrofa_Chr07 280 1e-72
Sscrofa_Chr10 178 3e-42
Sscrofa_Chr02 101 6e-19
Sscrofa_Chr06 68 8e-09
>Sscrofa_Chr01
|| Length = 315321322
Score = 961 bits (485), Expect = 0.0
Identities = 646/701 (92%), Gaps = 19/701 (2%)
Strand = Plus / Plus
Query: 23 ggactctcgcgacatctagggctcttcccaggcctacaagcgtcggtggcggcaacgaga 82
|||||||||| | ||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 207458732 ggactctcgcaatatctaggcctcttcccaggcctacaagcatctgtggcggcaacgagt 207458791
Query: 83 gttgccggcatcgtcaaggtccaggccatgttcagctccagcgcgaagatcgtgaagccc 142
||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 207458792 gttgccggcatcgtcaaggtccaggaca-----------------aagatcgtgaagccc 207458834
Query: 143 aatggcgagaagccggacgagttcgagtcgggcatctcccaggccctcctggagctggag 202
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 207458835 aatggcgagaagccggacgagttaaagtcgg-catctcccaggccctcctggagctggag 207458893
Query: 203 atgaactcggacctcaaggcccagctgcgcgagctgaacatcacggccgccaaggaaatc 262
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 207458894 atgaactcggacctcaaggcccagctgcgcaagctgaacatcacggccaccaagaaaatc 207458953
Query: 263 gaagtgggcggcggtcggaaggccatcatcatctttgtgccggtgccgcaactgaagtcc 322
|||||||| |||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 207458954 aaagtgggcagcggtcggaaagccatcatcatctttgtgccggttccccaactgaagtct 207459013
Query: 323 ttccagaagatccaagtgcggctcgtgcgcgagctggagaagaagttcagcgggaagcac 382
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 207459014 ttccagaagatccaggtgcggctcgtgcacgagctggagaagaagttcagcgggaagcac 207459073
Query: 383 gtggtcttcatcgcccagaggagaattctgcccaagccaactcggaaaagccgtacaaaa 442
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 207459074 gtggtcttcatcgctcagaggagaattctgcctaagccaactcgaaaaagccgtacaaaa 207459133
Query: 443 aataagcagaagcgtcccagaagccgcacgctgacagccgtgcacgatgccatcctggag 502
||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct: 207459134 aataagcagaagcgtcccagaagccgcaccctgatagctgtgcacgatgccatcctggag 207459193
Query: 503 gacctggttttcccgagtgagattgtgggcaagagaatccgcgtgaagctggacggcagc 562
|||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 207459194 gacctggttttcccaagtgagattgtgggcaagagaatccgcctgaagctggatggcagc 207459253
Query: 563 cgcctcatcaaggtccatttggacaaagcacagcagaacaacgtggagcacaaggttgaa 622
| ||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 207459254 c-actcttcaaggtccatttggacaaagcacagcagaactacgtggagcacaacattgaa 207459312
Query: 623 acattttctggtgtctataagaagctcacgggcaaggacgttaattttgaattcccagag 682
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 207459313 acattttctggtgtctataagaagctcacgggcaaggacattaattttgaattcccagag 207459372
Query: 683 tttcagttataaacaaatgactaaataaaatactattcaca 723
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 207459373 tttcagttataaacaaatgactaaataaaatattattcaca 207459413
Score = 961 bits (485), Expect = 0.0
Identities = 646/701 (92%), Gaps = 19/701 (2%)
Strand = Plus / Plus
Query: 23 ggactctcgcgacatctagggctcttcccaggcctacaagcgtcggtggcggcaacgaga 82
|||||||||| | ||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 207707296 ggactctcgcaatatctaggcctcttcccaggcctacaagcatctgtggcggcaacgagt 207707355
Query: 83 gttgccggcatcgtcaaggtccaggccatgttcagctccagcgcgaagatcgtgaagccc 142
||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 207707356 gttgccggcatcgtcaaggtccaggaca-----------------aagatcgtgaagccc 207707398
Query: 143 aatggcgagaagccggacgagttcgagtcgggcatctcccaggccctcctggagctggag 202
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 207707399 aatggcgagaagccggacgagttaaagtcgg-catctcccaggccctcctggagctggag 207707457
Query: 203 atgaactcggacctcaaggcccagctgcgcgagctgaacatcacggccgccaaggaaatc 262
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 207707458 atgaactcggacctcaaggcccagctgcgcaagctgaacatcacggccaccaagaaaatc 207707517
Query: 263 gaagtgggcggcggtcggaaggccatcatcatctttgtgccggtgccgcaactgaagtcc 322
|||||||| |||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 207707518 aaagtgggcagcggtcggaaagccatcatcatctttgtgccggttccccaactgaagtct 207707577
Query: 323 ttccagaagatccaagtgcggctcgtgcgcgagctggagaagaagttcagcgggaagcac 382
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 207707578 ttccagaagatccaggtgcggctcgtgcacgagctggagaagaagttcagcgggaagcac 207707637
Query: 383 gtggtcttcatcgcccagaggagaattctgcccaagccaactcggaaaagccgtacaaaa 442
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 207707638 gtggtcttcatcgctcagaggagaattctgcctaagccaactcgaaaaagccgtacaaaa 207707697
Query: 443 aataagcagaagcgtcccagaagccgcacgctgacagccgtgcacgatgccatcctggag 502
||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct: 207707698 aataagcagaagcgtcccagaagccgcaccctgatagctgtgcacgatgccatcctggag 207707757
Query: 503 gacctggttttcccgagtgagattgtgggcaagagaatccgcgtgaagctggacggcagc 562
|||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 207707758 gacctggttttcccaagtgagattgtgggcaagagaatccgcctgaagctggatggcagc 207707817
Query: 563 cgcctcatcaaggtccatttggacaaagcacagcagaacaacgtggagcacaaggttgaa 622
| ||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 207707818 c-actcttcaaggtccatttggacaaagcacagcagaactacgtggagcacaacattgaa 207707876
Query: 623 acattttctggtgtctataagaagctcacgggcaaggacgttaattttgaattcccagag 682
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 207707877 acattttctggtgtctataagaagctcacgggcaaggacattaattttgaattcccagag 207707936
Query: 683 tttcagttataaacaaatgactaaataaaatactattcaca 723
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 207707937 tttcagttataaacaaatgactaaataaaatattattcaca 207707977
>gb|JH118706.1| Sus scrofa unplaced genomic scaffold ChrUScaf1922
Length = 29197
Score = 646 bits (326), Expect = 0.0
Identities = 450/494 (91%), Gaps = 18/494 (3%)
Strand = Plus / Minus
Query: 23 ggactctcgcgacatctagggctcttcccaggcctacaagcgtcggtggcggcaacgaga 82
|||||||||| | ||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 26213 ggactctcgcaatatctaggcctcttcccaggcctacaagcatctgtggcggcaacgagt 26154
Query: 83 gttgccggcatcgtcaaggtccaggccatgttcagctccagcgcgaagatcgtgaagccc 142
||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 26153 gttgccggcatcgtcaaggtccaggaca-----------------aagatcgtgaagccc 26111
Query: 143 aatggcgagaagccggacgagttcgagtcgggcatctcccaggccctcctggagctggag 202
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 26110 aatggcgagaagccggacgagttaaagtcgg-catctcccaggccctcctggagctggag 26052
Query: 203 atgaactcggacctcaaggcccagctgcgcgagctgaacatcacggccgccaaggaaatc 262
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 26051 atgaactcggacctcaaggcccagctgcgcaagctgaacatcacggccaccaagaaaatc 25992
Query: 263 gaagtgggcggcggtcggaaggccatcatcatctttgtgccggtgccgcaactgaagtcc 322
|||||||| |||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 25991 aaagtgggcagcggtcggaaagccatcatcatctttgtgccggttccccaactgaagtct 25932
Query: 323 ttccagaagatccaagtgcggctcgtgcgcgagctggagaagaagttcagcgggaagcac 382
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 25931 ttccagaagatccaggtgcggctcgtgcacgagctggagaagaagttcagcgggaagcac 25872
Query: 383 gtggtcttcatcgcccagaggagaattctgcccaagccaactcggaaaagccgtacaaaa 442
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 25871 gtggtcttcatcgctcagaggagaattctgcctaagccaactcgaaaaagccgtacaaaa 25812
Query: 443 aataagcagaagcgtcccagaagccgcacgctgacagccgtgcacgatgccatcctggag 502
||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct: 25811 aataagcagaagcgtcccagaagccgcaccctgatagctgtgcacgatgccatcctggag 25752
Query: 503 gacctggttttccc 516
||||||||||||||
Sbjct: 25751 gacctggttttccc 25738
Score = 252 bits (127), Expect = 2e-64
Identities = 142/147 (96%)
Strand = Plus / Minus
Query: 577 ccatttggacaaagcacagcagaacaacgtggagcacaaggttgaaacattttctggtgt 636
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 25636 ccatttggacaaagcacagcagaactacgtggagcacaacattgaaacattttctggtgt 25577
Query: 637 ctataagaagctcacgggcaaggacgttaattttgaattcccagagtttcagttataaac 696
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 25576 ctataagaagctcacgggcaaggacattaattttgaattcccagagtttcagttataaac 25517
Query: 697 aaatgactaaataaaatactattcaca 723
|||||||||||||||||| ||||||||
Sbjct: 25516 aaatgactaaataaaatattattcaca 25490
>Sscrofa_Chr03
|| Length = 144787322
Score = 309 bits (156), Expect = 1e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 463 aagccgcacgctgacagccgtgcacgatgccatcctggaggacctggttttcccgagtga 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140520911 aagccgcacgctgacagccgtgcacgatgccatcctggaggacctggttttcccgagtga 140520970
Query: 523 gattgtgggcaagagaatccgcgtgaagctggacggcagccgcctcatcaaggtccattt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140520971 gattgtgggcaagagaatccgcgtgaagctggacggcagccgcctcatcaaggtccattt 140521030
Query: 583 ggacaaagcacagcagaacaacgtggagcacaaggt 618
||||||||||||||||||||||||||||||||||||
Sbjct: 140521031 ggacaaagcacagcagaacaacgtggagcacaaggt 140521066
Score = 289 bits (146), Expect = 1e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 255 aggaaatcgaagtgggcggcggtcggaaggccatcatcatctttgtgccggtgccgcaac 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140517745 aggaaatcgaagtgggcggcggtcggaaggccatcatcatctttgtgccggtgccgcaac 140517804
Query: 315 tgaagtccttccagaagatccaagtgcggctcgtgcgcgagctggagaagaagttcagcg 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140517805 tgaagtccttccagaagatccaagtgcggctcgtgcgcgagctggagaagaagttcagcg 140517864
Query: 375 ggaagcacgtggtcttcatcgcccag 400
||||||||||||||||||||||||||
Sbjct: 140517865 ggaagcacgtggtcttcatcgcccag 140517890
Score = 216 bits (109), Expect = 1e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 615 aggttgaaacattttctggtgtctataagaagctcacgggcaaggacgttaattttgaat 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140521533 aggttgaaacattttctggtgtctataagaagctcacgggcaaggacgttaattttgaat 140521592
Query: 675 tcccagagtttcagttataaacaaatgactaaataaaatactattcaca 723
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140521593 tcccagagtttcagttataaacaaatgactaaataaaatactattcaca 140521641
Score = 192 bits (97), Expect = 2e-46
Identities = 100/101 (99%)
Strand = Plus / Plus
Query: 2 gttctgttgccgagatttaacggactctcgcgacatctagggctcttcccaggcctacaa 61
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 140517127 gttctgttgccgagatttaacggactctcgcgacatctaggcctcttcccaggcctacaa 140517186
Query: 62 gcgtcggtggcggcaacgagagttgccggcatcgtcaaggt 102
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 140517187 gcgtcggtggcggcaacgagagttgccggcatcgtcaaggt 140517227
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 99 aggtccaggccatgttcagctccagcgcgaagatcgtgaagcccaatggcgagaagccgg 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140517393 aggtccaggccatgttcagctccagcgcgaagatcgtgaagcccaatggcgagaagccgg 140517452
Query: 159 acgagttcgagtcgggcatctcccagg 185
|||||||||||||||||||||||||||
Sbjct: 140517453 acgagttcgagtcgggcatctcccagg 140517479
Score = 151 bits (76), Expect = 7e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 182 caggccctcctggagctggagatgaactcggacctcaaggcccagctgcgcgagctgaac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140517559 caggccctcctggagctggagatgaactcggacctcaaggcccagctgcgcgagctgaac 140517618
Query: 242 atcacggccgccaagg 257
||||||||||||||||
Sbjct: 140517619 atcacggccgccaagg 140517634
Score = 135 bits (68), Expect = 4e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 398 cagaggagaattctgcccaagccaactcggaaaagccgtacaaaaaataagcagaagcgt 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140518407 cagaggagaattctgcccaagccaactcggaaaagccgtacaaaaaataagcagaagcgt 140518466
Query: 458 cccagaag 465
||||||||
Sbjct: 140518467 cccagaag 140518474
>Sscrofa_Chr13
|| Length = 218635234
Score = 305 bits (154), Expect = 2e-80
Identities = 313/366 (85%)
Strand = Plus / Minus
Query: 311 caactgaagtccttccagaagatccaagtgcggctcgtgcgcgagctggagaagaagttc 370
||||||||||| ||| ||| |||||||| |||||||| ||| |||||||| ||||
Sbjct: 20011035 caactgaagtctttctggaaaatccaagtctagctcgtgcaggagttggagaagttgttc 20010976
Query: 371 agcgggaagcacgtggtcttcatcgcccagaggagaattctgcccaagccaactcggaaa 430
| |||||||| || ||||||||| | ||| ||||||||||||| ||||||||| | |||
Sbjct: 20010975 cgtgggaagcatgttgtcttcatcactcaggggagaattctgcctaagccaacttgaaaa 20010916
Query: 431 agccgtacaaaaaataagcagaagcgtcccagaagccgcacgctgacagccgtgcacgat 490
||| |||||||||||||||| |||| |||||| ||| |||||| ||||| ||| | |
Sbjct: 20010915 agcagtacaaaaaataagcaaaagcatcccaggagctgcacgccaacagctatgcccagt 20010856
Query: 491 gccatcctggaggacctggttttcccgagtgagattgtgggcaagagaatccgcgtgaag 550
||| ||||||||||| || |||||| ||| | ||| ||||||||||||||| | |||| |
Sbjct: 20010855 gccgtcctggaggacttgattttcctgagggggatcgtgggcaagagaatctgtgtgagg 20010796
Query: 551 ctggacggcagccgcctcatcaaggtccatttggacaaagcacagcagaacaacgtggag 610
|||| | ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 20010795 ctgggcagcagctgcctcataaaggtccatttggacaaagcacagcacaacaacgtggag 20010736
Query: 611 cacaaggttgaaacattttctggtgtctataagaagctcacgggcaaggacgttaatttt 670
||||||||||||||||||||||||||||| |||||| ||| ||||||||| |||||||||
Sbjct: 20010735 cacaaggttgaaacattttctggtgtctagaagaagttcatgggcaaggatgttaatttt 20010676
Query: 671 gaattc 676
||||||
Sbjct: 20010675 gaattc 20010670
Score = 226 bits (114), Expect = 1e-56
Identities = 441/549 (80%), Gaps = 17/549 (3%)
Strand = Plus / Plus
Query: 174 gcatctcccaggccctcctggagctggagatgaactcggacctcaaggcccagctgcgcg 233
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | |
Sbjct: 37230449 gcatctcccaggccctcctggagctggagaggaacttagacctcaaggcccagctacagg 37230508
Query: 234 agctgaacatcacggccgccaaggaaatcgaagtgggcggcggtcggaaggccatcatca 293
||||||||| || ||| ||||||||| ||||| | || ||| ||| || || || |
Sbjct: 37230509 agctgaacaatacagccaccaaggaaactgaagttgatggtagtcagaaagctattataa 37230568
Query: 294 tctttgtgccggtgccgcaactgaagtccttccagaagatccaagtgcggctcgtgcgcg 353
||||||| || | || |||||||| || ||| |||| ||| | || |||| ||||| |
Sbjct: 37230569 tctttgttcccattcctcaactgaaatctttctagaaaatcaaggtctggctagtgcgtg 37230628
Query: 354 agctggagaagaagttcagcgggaagcacgtggtcttcatcgcccagaggagaattctgc 413
|| |||||||||||||||| |||||||||| ||||| ||| | |||| |||||||||||
Sbjct: 37230629 agttggagaagaagttcagtgggaagcacgctgtctttatcactcagaagagaattctgc 37230688
Query: 414 ccaagccaactcggaaaagccgtacaaaa-----------aataagcagaagcgtcccag 462
| ||||||||| ||||||| | ||||||| || ||||| |||| ||||||
Sbjct: 37230689 ctaagccaacttggaaaagtcatacaaaagaaataatagtaacaagcaaaagcctcccag 37230748
Query: 463 aagccgcacgctgacagccgtgcacgatgccatcctggaggacctggttttcccgagtga 522
|||| ||| ||||| || |||| |||| |||| ||| | |||||| ||| |||||
Sbjct: 37230749 gagccacactctgaccaccatgcatgatgtgatcccagagaatttggtttccccaagtga 37230808
Query: 523 gattgtgggcaagagaatccgcgtgaagctggacggcagccgcctcatcaaggtccattt 582
|| || | ||||||||| || ||| | || || |||||| | ||| | |||| ||| |
Sbjct: 37230809 gactgag--caagagaattcgtgtgcaactagatggcagctgtctcctagaggttcatgt 37230866
Query: 583 ggacaaagcacagcagaacaacgtggagcacaaggttgaaacattttctggtgtctataa 642
||| |||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 37230867 ggataaagcat--cagaacaatgtggaacacaaggttgaaacattttctggagtctataa 37230924
Query: 643 gaagctcacgggcaaggacgttaattttgaattcccagagtttcagttataaac--aaat 700
||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 37230925 gaagctcacaggcaaggatgttaattttgaattcccagagtttcagttgtaaacaaaaat 37230984
Query: 701 gactaaata 709
|||||||||
Sbjct: 37230985 gactaaata 37230993
>Sscrofa_Chr07
|| Length = 134764511
Score = 280 bits (141), Expect = 1e-72
Identities = 290/336 (86%), Gaps = 4/336 (1%)
Strand = Plus / Minus
Query: 389 ttcatcgcccagaggagaattctgcccaagccaactcggaaaagccgtacaaaaaataag 448
||||| || |||||||||||||||||||| ||| ||| |||| || |||||||||||||
Sbjct: 122235026 ttcattgctcagaggagaattctgcccaatccacctcaaaaaatccatacaaaaaataag 122234967
Query: 449 cagaagcgtcccagaagccgcacgctgacagccgtgcacgatgccatcctggaggacctg 508
|| ||| ||||||| |||| ||| ||||||||| ||||||||| || |||||||||| ||
Sbjct: 122234966 caaaagtgtcccaggagccacaccctgacagccatgcacgatggcaccctggaggacttg 122234907
Query: 509 gttttcccgagtgagattgtgggcaagagaatccgcgtgaagctggacggcagccgcctc 568
| ||||| ||||||| ||||| |||||||| | |||||| ||||||||||| ||||
Sbjct: 122234906 gcgttccctcgtgagatgatgggc-agagaatctgggtgaagagggacggcagccacctc 122234848
Query: 569 atcaaggtccatttggacaaagcacagcagaacaacgtggagcacaaggt-tgaaacatt 627
|| |||| || ||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 122234847 ataaaggaccctttggacaaagcacagcagaacaacgtggagcacatggtatgaaacatt 122234788
Query: 628 ttctggtgtctataagaagctcacgggcaaggacgttaattttgaattcccagagtttca 687
|||||| ||||||||||||||| |||| |||| |||||||||||||||||||||||||
Sbjct: 122234787 ttctggaatctataagaagctcatgggcgaggatgttaattttgaattcccagagtttcg 122234728
Query: 688 gttataa--acaaatgactaaataaaatactattca 721
| | ||| | |||||||||||||||||| ||||||
Sbjct: 122234727 gctgtaaatagaaatgactaaataaaatattattca 122234692
Score = 170 bits (86), Expect = 7e-40
Identities = 150/170 (88%), Gaps = 1/170 (0%)
Strand = Plus / Minus
Query: 90 gcatcgtcaaggtccaggccatgttcagctccagcgcgaagatcgtgaagcccaatggcg 149
|||||| ||||||||||||||||||||||||| | || | || ||||||||||||||||
Sbjct: 122235300 gcatcgccaaggtccaggccatgttcagctccgg-gctaggactgtgaagcccaatggcg 122235242
Query: 150 agaagccggacgagttcgagtcgggcatctcccaggccctcctggagctggagatgaact 209
|||||||||| | | ||| |||||||||||||||| |||| ||| |||||||||||||
Sbjct: 122235241 agaagccggatgcactggagacgggcatctcccaggctctcccggaactggagatgaact 122235182
Query: 210 cggacctcaaggcccagctgcgcgagctgaacatcacggccgccaaggaa 259
|||||||||||||||||||| |||||||||| ||| |||||||||||||
Sbjct: 122235181 tggacctcaaggcccagctgctcgagctgaacctcatggccgccaaggaa 122235132
>Sscrofa_Chr10
|| Length = 79102373
Score = 178 bits (90), Expect = 3e-42
Identities = 423/527 (80%), Gaps = 19/527 (3%)
Strand = Plus / Minus
Query: 191 ctggagctggagatgaactcggacctcaaggcccagctgcgcgagctgaacatcacggcc 250
||||||||||||||||||||||||||| |||||||||| || |||||| | | | ||
Sbjct: 16246275 ctggagctggagatgaactcggacctcgaggcccagctttgcaagctgaccttgcagtcc 16246216
Query: 251 gccaaggaaatcgaagtgggcggcggtcggaaggccatcatcatctttgtgccggtgccg 310
| |||||||| ||||| || || ||| |||| || || |||||| |||| || || ||
Sbjct: 16246215 tc-aaggaaattgaagttggtggtggttggaaagctattatcatccttgtccccgttcct 16246157
Query: 311 caactgaagtccttccagaagatccaagtgcggctcgtgcgcgagctggagaagaagttc 370
||||||||||| |||||| ||||| || |||||||||| ||| |||||||| |||
Sbjct: 16246156 caactgaagtctggccagaaaatccaggtccggctcgtgcatgagttggagaag---ttc 16246100
Query: 371 agcgggaagcacgtggtcttcatcgcccagaggagaattctgcccaagccaactcggaaa 430
|| ||||| || || ||| |||| ||||||| || | ||||||| |||||||||| |||
Sbjct: 16246099 agtgggaaacaagttgtcctcattgcccagaagacacttctgcctgagccaactcgaaaa 16246040
Query: 431 agccgtac-aaaaaataagcagaagcgtcccagaagccgcacgctgacagccgtgcacga 489
|||| ||| |||||||||||| |||| |||||| |||| | ||||||| ||||| ||
Sbjct: 16246039 agccctaccaaaaaataagcaaaagcatcccaggagccatgccttgacagctgtgcagga 16245980
Query: 490 tgccatcctggaggacctggttttcccgagt------gagattgtgggcaagagaatccg 543
|| |||||||| || | |||||||||||||| ||||| | || |||||||||||
Sbjct: 16245979 tgtcatcctgggggccttggttttcccgagtgagagtgagatcgaggacaagagaatcca 16245920
Query: 544 cgtgaagctggacggcagccgcctcatcaaggtccatttggacaaagcacagcagaacaa 603
||| |||||||| ||||||| | ||||||||| ||| || ||||||||||||| |
Sbjct: 16245919 tgtggagctggactgcagccg--gcctcaaggtccgtttagatgaagcacagcagaatga 16245862
Query: 604 cgtggagcacaaggttgaaacattttctggtgtct-ataagaagctcacgggcaaggacg 662
| | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 16245861 ccagaagcacaaggttgaaacattttctggtgtctcttaagaagctcacgggc---tctc 16245805
Query: 663 ttaattttgaattcccagagtttcagttataaac--aaatgactaaa 707
|||||||||||||||||| ||||||||| ||||| |||||||||||
Sbjct: 16245804 ttaattttgaattcccagtgtttcagttgtaaacataaatgactaaa 16245758
>Sscrofa_Chr02
|| Length = 162569375
Score = 101 bits (51), Expect = 6e-19
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 581 ttggacaaagcacagcagaacaacgtggagcacaaggttgaaacattttctggtgtctat 640
||||| |||||||||||||||||||| |||||| ||| |||||| |||||||||||||||
Sbjct: 14757514 ttggataaagcacagcagaacaacgtagagcaccaggctgaaactttttctggtgtctat 14757573
Query: 641 aagaagctcacgggcaaggacgttaat 667
|||| |||||| |||||| | ||||||
Sbjct: 14757574 aagatgctcacaggcaagaatgttaat 14757600
Score = 95.6 bits (48), Expect = 3e-17
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 552 tggacggcagccgcctcatcaaggtccatttggacaaagcacagcagaacaacgtggagc 611
|||| |||||| | ||||| ||| | || ||||| |||| |||||||| |||| ||||||
Sbjct: 14212076 tggatggcagctggctcataaagcttcacttggataaagtacagcagatcaacatggagc 14212135
Query: 612 acaaggttgaaacattttctggtgtctataagaagctcacgggcaaggacgttaat 667
|| ||| |||||| ||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 14212136 accaggctgaaactttttctggtgtctataagatgctcacaggcaaggatgttaat 14212191
Score = 95.6 bits (48), Expect = 3e-17
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 552 tggacggcagccgcctcatcaaggtccatttggacaaagcacagcagaacaacgtggagc 611
|||| |||||| | ||||| ||| | || ||||| |||| |||||||| |||| ||||||
Sbjct: 14551470 tggatggcagctggctcataaagcttcacttggataaagtacagcagatcaacatggagc 14551529
Query: 612 acaaggttgaaacattttctggtgtctataagaagctcacgggcaaggacgttaat 667
|| ||| |||||| ||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 14551530 accaggctgaaactttttctggtgtctataagatgctcacaggcaaggatgttaat 14551585
Score = 69.9 bits (35), Expect = 2e-09
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 581 ttggacaaagcacagcagaacaacgtggagcacaaggttgaaacattttctggtgtcta 639
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Sbjct: 14913274 ttggataaagcacagcagaacgacgtggagcaccaggctgaaactttttctggggtcta 14913216
>Sscrofa_Chr06
|| Length = 157765593
Score = 67.9 bits (34), Expect = 8e-09
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 686 cagttataaacaaatgactaaataaaatactattcaca 723
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Sbjct: 153683489 cagttgtaaacaaatgactaaataaaatactattcaca 153683526
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,612,858
Number of extensions: 477
Number of successful extensions: 477
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 28
Length of query: 784
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 763
Effective length of database: 2,808,413,156
Effective search space: 2142819238028
Effective search space used: 2142819238028
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)