Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000642
(1919 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp... 498 e-140
Alignment gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ... 485 e-137
Alignment gi|NP_005505.2| major histocompatibility complex, class I, B pr... 484 e-137
Alignment gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1... 484 e-136
Alignment gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al... 478 e-135
Alignment gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c... 460 e-129
Alignment gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c... 443 e-124
Alignment gi|NP_001091949.1| HLA class I histocompatibility antigen, alph... 427 e-119
Alignment gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c... 426 e-119
Alignment gi|NP_001091948.1| HLA class I histocompatibility antigen, alph... 259 6e-69
>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 498 bits (1281), Expect = e-140
Identities = 242/361 (67%), Positives = 270/361 (74%), Gaps = 2/361 (0%)
Frame = +1
Query: 58 LRIMGPRXXXXXXXXXXXXXXXREGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRF 237
+ +M PR G HS+RYF T+VSRP RG+PRFI+VGYVDDTQFVRF
Sbjct: 1 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 60
Query: 238 DSDAPNPRMEPRAPWIEQEGQEYWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQ 417
DSDA + RMEPRAPWIEQEG EYWD+ETRN +QT RV+L LRGYYNQSEAGSHT+Q
Sbjct: 61 DSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQ 120
Query: 418 SMYGCDVGPDWLFLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQM 597
MYGCDVG D FLRGY QDAYDG DYIALNEDLRSWTAAD AAQITKRKWEAA EAEQ+
Sbjct: 121 IMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQL 180
Query: 598 RSYLEGACVEWLQKYLQMGNNTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 777
R+YL+G CVEWL++YL+ G TLQR +PPKTH+T HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 240
Query: 778 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD- 954
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 300
Query: 955 -PPQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1131
WR+K S KGGSYTQAA SDSAQGSDVSL
Sbjct: 301 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 360
Query: 1132 T 1134
T
Sbjct: 361 T 361
>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 485 bits (1249), Expect = e-137
Identities = 238/361 (65%), Positives = 264/361 (73%), Gaps = 2/361 (0%)
Frame = +1
Query: 58 LRIMGPRXXXXXXXXXXXXXXXREGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRF 237
+ +M PR G HS+RYF T+VSRP RG+PRFI+VGYVDDTQFVRF
Sbjct: 1 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 60
Query: 238 DSDAPNPRMEPRAPWIEQEGQEYWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQ 417
DSDA + +MEPRAPWIEQEG EYWD+ETRN +QT R NL LRGYYNQSE GSHT+Q
Sbjct: 61 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ 120
Query: 418 SMYGCDVGPDWLFLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQM 597
MYGCDVGPD FLRGY QDAYDG DYIALNEDLRSWTAAD AAQITKRKWEA AEQ
Sbjct: 121 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR 180
Query: 598 RSYLEGACVEWLQKYLQMGNNTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 777
R YLEG CV+ L++YL+ G TLQR +PPKTH+T HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 240
Query: 778 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD- 954
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 300
Query: 955 -PPQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1131
WR+K S KGGSYTQAA SDSAQGSDVSL
Sbjct: 301 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 360
Query: 1132 T 1134
T
Sbjct: 361 T 361
>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
sapiens].
Length = 362
Score = 484 bits (1247), Expect = e-137
Identities = 241/359 (67%), Positives = 267/359 (74%), Gaps = 2/359 (0%)
Frame = +1
Query: 64 IMGPRXXXXXXXXXXXXXXXREGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDS 243
+M PR G HS+RYF T+VSRP RG+PRFISVGYVDDTQFVRFDS
Sbjct: 3 VMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDS 62
Query: 244 DAPNPRMEPRAPWIEQEGQEYWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSM 423
DA +PR EPRAPWIEQEG EYWD T+ AQT R +L NLRGYYNQSEAGSHTLQSM
Sbjct: 63 DAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSM 122
Query: 424 YGCDVGPDWLFLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRS 603
YGCDVGPD LRG+ Q AYDG DYIALNEDLRSWTAADTAAQIT+RKWEAA EAEQ R+
Sbjct: 123 YGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRA 182
Query: 604 YLEGACVEWLQKYLQMGNNTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQ 783
YLEG CVEWL++YL+ G + L+RA+PPKTHVT HP SD TLRCWALGFYP EI+LTWQ
Sbjct: 183 YLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQ 242
Query: 784 REGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP-- 957
R+G+DQ+QD ELVETRP+GD TFQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+P
Sbjct: 243 RDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSS 302
Query: 958 PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1134
R+K SG KGGSY+QAA SDSAQGSDVSLT
Sbjct: 303 QSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSYSQAACSDSAQGSDVSLT 361
>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 484 bits (1245), Expect = e-136
Identities = 240/361 (66%), Positives = 267/361 (73%), Gaps = 3/361 (0%)
Frame = +1
Query: 58 LRIMGPRXXXXXXXXXXXXXXXREGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRF 237
+R+M PR HS+RYFDTAVSRP RG+PRFISVGYVDDTQFVRF
Sbjct: 1 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60
Query: 238 DSDAPNPRMEPRAPWIEQEGQEYWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQ 417
DSDA +PR EPRAPW+EQEG EYWD ET+N AQ RV+L NLRGYYNQSE GSHTLQ
Sbjct: 61 DSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120
Query: 418 SMYGCDVGPDWLFLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQM 597
MYGCD+GPD LRGY Q AYDG DYIALNEDLRSWTAADTAAQIT+RK EAA AEQ+
Sbjct: 121 RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180
Query: 598 RSYLEGACVEWLQKYLQMGNNTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 777
R+YLEG CVEWL++YL+ G TLQRAEPPKTHVT HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240
Query: 778 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 957
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300
Query: 958 ---PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVS 1128
P R+K SG KGGS +QAA S+SAQGSD S
Sbjct: 301 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES 360
Query: 1129 L 1131
L
Sbjct: 361 L 361
>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 478 bits (1230), Expect = e-135
Identities = 238/361 (65%), Positives = 265/361 (73%), Gaps = 3/361 (0%)
Frame = +1
Query: 58 LRIMGPRXXXXXXXXXXXXXXXREGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRF 237
+R+M PR HS+RYFDTAVSRP RG+PRFISVGYVDDTQFVRF
Sbjct: 1 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60
Query: 238 DSDAPNPRMEPRAPWIEQEGQEYWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQ 417
DSDA +PR EPRAPW+EQEG EYWD ET+ AQ RV+L NLRGYYNQSE GSHTLQ
Sbjct: 61 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120
Query: 418 SMYGCDVGPDWLFLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQM 597
M GCD+GPD LRGY Q AYDG DYIALNEDLRSWTAADTAAQIT+RK EAA AEQ+
Sbjct: 121 RMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180
Query: 598 RSYLEGACVEWLQKYLQMGNNTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 777
R+YLEG CVEWL++YL+ G TLQRAEPPKTHVT HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240
Query: 778 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 957
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300
Query: 958 ---PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVS 1128
P R+K SG KGGS +QAA S+SAQGSD S
Sbjct: 301 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES 360
Query: 1129 L 1131
L
Sbjct: 361 L 361
>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor [Homo
sapiens].
Length = 358
Score = 460 bits (1184), Expect = e-129
Identities = 222/333 (66%), Positives = 250/333 (75%), Gaps = 2/333 (0%)
Frame = +1
Query: 130 GPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYW 309
G HSL+YF T+VSRP RG+PRFISVGYVDDTQFVRFD+DA +PRM PRAPW+EQEG EYW
Sbjct: 22 GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYW 81
Query: 310 DEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDG 489
D ETR+A +AQ FRVNL LRGYYNQSEAGSHTLQ M+GC++GPD FLRGY Q AYDG
Sbjct: 82 DRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDG 141
Query: 490 ADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQ 669
DY+ LNEDLRSWTA DTAAQI+++K A EAE R+YLE CVEWL KYL+ G TL
Sbjct: 142 KDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLL 201
Query: 670 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 849
EPPKTHVT HP SD TLRCWALGFYP EI+LTWQ++G+ +QD ELVETRP+GDGT
Sbjct: 202 HLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGT 261
Query: 850 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ--XXXXXXXXXXXXXXXXXXXX 1023
FQKWAA+VVP GEEQ YTCHVQHEGL EP+TLRW P
Sbjct: 262 FQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQPTIPIVGIIAGLVLLGSVVSG 321
Query: 1024 XXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSD 1122
WRKK SG KGGSY++A SDSAQGS+
Sbjct: 322 AVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSE 354
>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor
[Homo sapiens].
Length = 338
Score = 443 bits (1140), Expect = e-124
Identities = 210/296 (70%), Positives = 233/296 (78%)
Frame = +1
Query: 64 IMGPRXXXXXXXXXXXXXXXREGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDS 243
+M PR G HS+RYF AVSRP RG+PRFI++GYVDDTQFVRFDS
Sbjct: 3 VMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDS 62
Query: 244 DAPNPRMEPRAPWIEQEGQEYWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSM 423
D+ PRMEPRAPW+EQEG EYW+EETRN AQT R+NL LRGYYNQSEA SHTLQ M
Sbjct: 63 DSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWM 122
Query: 424 YGCDVGPDWLFLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRS 603
GCD+G D LRGY Q AYDG DY+ALNEDLRSWTAADTAAQI+KRK EAA+ AEQ R+
Sbjct: 123 IGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRA 182
Query: 604 YLEGACVEWLQKYLQMGNNTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQ 783
YLEG CVEWL +YL+ G LQRA+PPKTHVT HP D TLRCWALGFYP EI LTWQ
Sbjct: 183 YLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPAEIILTWQ 242
Query: 784 REGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 951
R+G+DQ+QD+ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL EPL LRW
Sbjct: 243 RDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRW 298
>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
precursor [Homo sapiens].
Length = 442
Score = 427 bits (1099), Expect = e-119
Identities = 209/332 (62%), Positives = 240/332 (72%), Gaps = 2/332 (0%)
Frame = +1
Query: 130 GPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYW 309
G HSLRYF TAVSRP RG+PR+I+V YVDDTQF+RFDSDA PRMEPR PW+EQEG +YW
Sbjct: 22 GSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYW 81
Query: 310 DEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDG 489
+ T A +AQT RV L NL YNQSEAGSHTLQ M GCD+GPD LRGY Q AYDG
Sbjct: 82 EWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDG 141
Query: 490 ADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQ 669
DYI+LNEDLRSWTAADT AQIT+R +EA + AE+ R+YLEG C+E L++YL+ G TLQ
Sbjct: 142 KDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQ 201
Query: 670 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 849
RA+PPK HV HP SD TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGT
Sbjct: 202 RADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGT 261
Query: 850 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PPQXXXXXXXXXXXXXXXXXXXX 1023
FQKWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+ P
Sbjct: 262 FQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTG 321
Query: 1024 XXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGS 1119
WRKK S GSY+QAA G+
Sbjct: 322 AVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGN 353
>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
precursor [Homo sapiens].
Length = 346
Score = 426 bits (1096), Expect = e-119
Identities = 208/324 (64%), Positives = 238/324 (73%), Gaps = 2/324 (0%)
Frame = +1
Query: 130 GPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYW 309
G HSLRYF TAVSRP RG+PR+I+V YVDDTQF+RFDSDA PRMEPR PW+EQEG +YW
Sbjct: 22 GSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYW 81
Query: 310 DEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDG 489
+ T A +AQT RV L NL YNQSEAGSHTLQ M GCD+GPD LRGY Q AYDG
Sbjct: 82 EWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDG 141
Query: 490 ADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQ 669
DYI+LNEDLRSWTAADT AQIT+R +EA + AE+ R+YLEG C+E L++YL+ G TLQ
Sbjct: 142 KDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQ 201
Query: 670 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 849
RA+PPK HV HP SD TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGT
Sbjct: 202 RADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGT 261
Query: 850 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PPQXXXXXXXXXXXXXXXXXXXX 1023
FQKWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+ P
Sbjct: 262 FQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTG 321
Query: 1024 XXXXXXXWRKKRSGEKGGSYTQAA 1095
WRKK S GSY+QAA
Sbjct: 322 AVVAAVMWRKKSSDRNRGSYSQAA 345
>ref|NP_001091948.1| HLA class I histocompatibility antigen, alpha chain F isoform 3
precursor [Homo sapiens].
Length = 254
Score = 259 bits (662), Expect = 6e-69
Identities = 126/183 (68%), Positives = 145/183 (79%)
Frame = +1
Query: 130 GPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYW 309
G HSLRYF TAVSRP RG+PR+I+V YVDDTQF+RFDSDA PRMEPR PW+EQEG +YW
Sbjct: 22 GSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYW 81
Query: 310 DEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDG 489
+ T A +AQT RV L NL YNQSEAGSHTLQ M GCD+GPD LRGY Q AYDG
Sbjct: 82 EWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDG 141
Query: 490 ADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQ 669
DYI+LNEDLRSWTAADT AQIT+R +EA + AE+ R+YLEG C+E L++YL+ G TLQ
Sbjct: 142 KDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQ 201
Query: 670 RAE 678
RAE
Sbjct: 202 RAE 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 77,176,749
Number of extensions: 2351564
Number of successful extensions: 13966
Number of sequences better than 1.0e-05: 76
Number of HSP's gapped: 13716
Number of HSP's successfully gapped: 82
Length of query: 639
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 530
Effective length of database: 14,704,088
Effective search space: 7793166640
Effective search space used: 7793166640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000642
(1919 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001473611.1| PREDICTED: h-2 class I histocompatibility an... 436 e-122
Alignment gi|XP_003086103.1| PREDICTED: h-2 class I histocompatibility an... 434 e-122
Alignment gi|XP_001473590.1| PREDICTED: h-2 class I histocompatibility an... 434 e-122
Alignment gi|XP_003086102.1| PREDICTED: h-2 class I histocompatibility an... 434 e-121
Alignment gi|XP_003086104.1| PREDICTED: h-2 class I histocompatibility an... 433 e-121
Alignment gi|NP_034528.1| H-2 class I histocompatibility antigen, D-37 al... 433 e-121
Alignment gi|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alp... 431 e-120
Alignment gi|NP_034510.3| H-2 class I histocompatibility antigen, L-D alp... 430 e-120
Alignment gi|XP_003086847.1| PREDICTED: h-2 class I histocompatibility an... 425 e-119
Alignment gi|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus]. 424 e-119
>ref|XP_001473611.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
chain-like isoform 2 [Mus musculus].
Length = 368
Score = 436 bits (1121), Expect = e-122
Identities = 212/338 (62%), Positives = 248/338 (73%), Gaps = 2/338 (0%)
Frame = +1
Query: 124 REGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQE 303
R GPHSLRYF TAVSRP G+PRFI+VGYVDDTQFVRFDSDA NPR EPRAPW+EQEG E
Sbjct: 20 RAGPHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPE 79
Query: 304 YWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAY 483
YW+E+T+ A Q FRV+L + YYNQS+ GSHT Q M+GCDVG DW LRGY Q AY
Sbjct: 80 YWEEQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAY 139
Query: 484 DGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNT 663
DG DYIALNEDL++WTAADTAA IT+RKWE A +AE R+YLEG CVEWL++YL++GN T
Sbjct: 140 DGRDYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNET 199
Query: 664 LQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGD 843
L R + PK HVT HP S + VTLRCWALGFYP +I+LTWQ G+D ++DMELVETRP+GD
Sbjct: 200 LLRTDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGD 259
Query: 844 GTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PPQXXXXXXXXXXXXXXXXXXX 1020
GTFQKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW PP
Sbjct: 260 GTFQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWKLPPSTVSNTVIIAVLVVLGAAIV 319
Query: 1021 XXXXXXXXWRKKR-SGEKGGSYTQAAGSDSAQGSDVSL 1131
+ +R +G KG +Y A GS Q SD+SL
Sbjct: 320 TGAVVAFVMKMRRNTGGKGVNYALAPGS---QTSDLSL 354
>ref|XP_003086103.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
chain-like [Mus musculus].
Length = 380
Score = 434 bits (1117), Expect = e-122
Identities = 211/336 (62%), Positives = 247/336 (73%), Gaps = 2/336 (0%)
Frame = +1
Query: 130 GPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYW 309
GPHSLRYF TAVSRP G+PRFI+VGYVDDTQFVRFDSDA NPR EPRAPW+EQEG EYW
Sbjct: 34 GPHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYW 93
Query: 310 DEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDG 489
+E+T+ A Q FRV+L + YYNQS+ GSHT Q M+GCDVG DW LRGY Q AYDG
Sbjct: 94 EEQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDG 153
Query: 490 ADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQ 669
DYIALNEDL++WTAADTAA IT+RKWE A +AE R+YLEG CVEWL++YL++GN TL
Sbjct: 154 RDYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLL 213
Query: 670 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 849
R + PK HVT HP S + VTLRCWALGFYP +I+LTWQ G+D ++DMELVETRP+GDGT
Sbjct: 214 RTDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGT 273
Query: 850 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PPQXXXXXXXXXXXXXXXXXXXXX 1026
FQKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW PP
Sbjct: 274 FQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWKLPPSTVSNTVIIAVLVVLGAAIVTG 333
Query: 1027 XXXXXXWRKKR-SGEKGGSYTQAAGSDSAQGSDVSL 1131
+ +R +G KG +Y A GS Q SD+SL
Sbjct: 334 AVVAFVMKMRRNTGGKGVNYALAPGS---QTSDLSL 366
>ref|XP_001473590.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
chain-like isoform 1 [Mus musculus].
Length = 385
Score = 434 bits (1117), Expect = e-122
Identities = 211/336 (62%), Positives = 247/336 (73%), Gaps = 2/336 (0%)
Frame = +1
Query: 130 GPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYW 309
GPHSLRYF TAVSRP G+PRFI+VGYVDDTQFVRFDSDA NPR EPRAPW+EQEG EYW
Sbjct: 39 GPHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYW 98
Query: 310 DEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDG 489
+E+T+ A Q FRV+L + YYNQS+ GSHT Q M+GCDVG DW LRGY Q AYDG
Sbjct: 99 EEQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDG 158
Query: 490 ADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQ 669
DYIALNEDL++WTAADTAA IT+RKWE A +AE R+YLEG CVEWL++YL++GN TL
Sbjct: 159 RDYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLL 218
Query: 670 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 849
R + PK HVT HP S + VTLRCWALGFYP +I+LTWQ G+D ++DMELVETRP+GDGT
Sbjct: 219 RTDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGT 278
Query: 850 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PPQXXXXXXXXXXXXXXXXXXXXX 1026
FQKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW PP
Sbjct: 279 FQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWKLPPSTVSNTVIIAVLVVLGAAIVTG 338
Query: 1027 XXXXXXWRKKR-SGEKGGSYTQAAGSDSAQGSDVSL 1131
+ +R +G KG +Y A GS Q SD+SL
Sbjct: 339 AVVAFVMKMRRNTGGKGVNYALAPGS---QTSDLSL 371
>ref|XP_003086102.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
chain-like [Mus musculus].
Length = 370
Score = 434 bits (1115), Expect = e-121
Identities = 198/279 (70%), Positives = 229/279 (82%)
Frame = +1
Query: 124 REGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQE 303
R GPHSLRYF TAVSRP G+PRFI+VGYVDDTQFVRFDSDA NPR EPRAPW+EQEG E
Sbjct: 20 RAGPHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPE 79
Query: 304 YWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAY 483
YW+E+T+ A Q FRV+L + YYNQS+ GSHT Q M+GCDVG DW LRGY Q AY
Sbjct: 80 YWEEQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAY 139
Query: 484 DGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNT 663
DG DYIALNEDL++WTAADTAA IT+RKWE A +AE R+YLEG CVEWL++YL++GN T
Sbjct: 140 DGRDYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNET 199
Query: 664 LQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGD 843
L R + PK HVT HP S + VTLRCWALGFYP +I+LTWQ G+D ++DMELVETRP+GD
Sbjct: 200 LLRTDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGD 259
Query: 844 GTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 960
GTFQKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW P
Sbjct: 260 GTFQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWKLP 298
>ref|XP_003086104.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
chain-like [Mus musculus].
Length = 370
Score = 433 bits (1113), Expect = e-121
Identities = 211/337 (62%), Positives = 247/337 (73%), Gaps = 2/337 (0%)
Frame = +1
Query: 127 EGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEY 306
E PHSLRYF TAVSRP G+PRFI+VGYVDDTQFVRFDSDA NPR EPRAPW+EQEG EY
Sbjct: 23 ECPHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEY 82
Query: 307 WDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYD 486
W+E+T+ A Q FRV+L + YYNQS+ GSHT Q M+GCDVG DW LRGY Q AYD
Sbjct: 83 WEEQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYD 142
Query: 487 GADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTL 666
G DYIALNEDL++WTAADTAA IT+RKWE A +AE R+YLEG CVEWL++YL++GN TL
Sbjct: 143 GRDYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETL 202
Query: 667 QRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDG 846
R + PK HVT HP S + VTLRCWALGFYP +I+LTWQ G+D ++DMELVETRP+GDG
Sbjct: 203 LRTDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDG 262
Query: 847 TFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PPQXXXXXXXXXXXXXXXXXXXX 1023
TFQKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW PP
Sbjct: 263 TFQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWKLPPSTVSNTVIIAVLVVLGAAIVT 322
Query: 1024 XXXXXXXWRKKR-SGEKGGSYTQAAGSDSAQGSDVSL 1131
+ +R +G KG +Y A GS Q SD+SL
Sbjct: 323 GAVVAFVMKMRRNTGGKGVNYALAPGS---QTSDLSL 356
>ref|NP_034528.1| H-2 class I histocompatibility antigen, D-37 alpha chain precursor
[Mus musculus].
Length = 357
Score = 433 bits (1113), Expect = e-121
Identities = 202/279 (72%), Positives = 227/279 (81%)
Frame = +1
Query: 124 REGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQE 303
+ PHSLRYF TAVSRP G+PRFI VGYVDDTQFVRFDSDA NPRMEPRA WIEQEG E
Sbjct: 19 QSSPHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRARWIEQEGPE 78
Query: 304 YWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAY 483
YW+ ET A + FRVNL L GYYNQS SHTLQ MYGCDVGPD LRGY Q+AY
Sbjct: 79 YWERETWKARDMGRNFRVNLRTLLGYYNQSNDESHTLQWMYGCDVGPDGRLLRGYCQEAY 138
Query: 484 DGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNT 663
DG DYI+LNEDLRSWTA D A+QI+K K EA DEA Q R+YL+G CVEWL +YL++GN T
Sbjct: 139 DGQDYISLNEDLRSWTANDIASQISKHKSEAVDEAHQQRAYLQGPCVEWLHRYLRLGNET 198
Query: 664 LQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGD 843
LQR++PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GD
Sbjct: 199 LQRSDPPKAHVTHHPRSEDEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGD 258
Query: 844 GTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 960
GTFQKWAA+VVP G+EQ YTCHV HEGL EPLTLRW+PP
Sbjct: 259 GTFQKWAAVVVPLGKEQYYTCHVYHEGLPEPLTLRWEPP 297
>ref|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alpha chain precursor
[Mus musculus].
Length = 325
Score = 431 bits (1108), Expect = e-120
Identities = 200/298 (67%), Positives = 233/298 (78%)
Frame = +1
Query: 67 MGPRXXXXXXXXXXXXXXXREGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSD 246
M PR + G HS+RYF+T+VSRP G+PRFI VGYVDDTQFVRFDSD
Sbjct: 4 MAPRTLLLLLAAALAPTQTQAGSHSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSD 63
Query: 247 APNPRMEPRAPWIEQEGQEYWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMY 426
A PRMEPRAPW+EQEG EYW+ ET+ A G+ Q+F V+L L GYYNQSE+GSHT+Q MY
Sbjct: 64 AETPRMEPRAPWMEQEGPEYWERETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMY 123
Query: 427 GCDVGPDWLFLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSY 606
GC VG D FLRGY Q AYDG DYIALNEDL++WTAAD AA IT+RKWE A AE R+Y
Sbjct: 124 GCKVGSDGRFLRGYLQYAYDGRDYIALNEDLKTWTAADVAAIITRRKWEQAGAAEYYRAY 183
Query: 607 LEGACVEWLQKYLQMGNNTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 786
LE CVEWL +YL++G TL R +PPKTHVT HP S+ VTLRCWALGFYP +I+LTWQ
Sbjct: 184 LEAECVEWLLRYLELGKETLLRTDPPKTHVTHHPGSEGDVTLRCWALGFYPADITLTWQL 243
Query: 787 EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 960
G++ +QDMELVETRP+GDGTFQKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+PP
Sbjct: 244 NGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEPP 301
>ref|NP_034510.3| H-2 class I histocompatibility antigen, L-D alpha chain precursor
[Mus musculus].
Length = 362
Score = 430 bits (1105), Expect = e-120
Identities = 209/353 (59%), Positives = 245/353 (69%), Gaps = 2/353 (0%)
Frame = +1
Query: 67 MGPRXXXXXXXXXXXXXXXREGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSD 246
M PR R GPHS+RYF+TAVSRP +PR+ISVGYVD+ +FVRFDSD
Sbjct: 4 MAPRTLLLLLAAALAPTQTRAGPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSD 63
Query: 247 APNPRMEPRAPWIEQEGQEYWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMY 426
A NPR EPRAPW+EQEG EYW+ ET+ A G Q FRV+L NL GYYNQS GSHTLQ M
Sbjct: 64 AENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMS 123
Query: 427 GCDVGPDWLFLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSY 606
GCD+G DW LRGY Q AY+G DYIALNEDL++WTAAD AAQIT+RKWE + AE ++Y
Sbjct: 124 GCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAY 183
Query: 607 LEGACVEWLQKYLQMGNNTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 786
LEG CVEWL +YL+ GN TL R + PK HVT HP S VTLRCWALGFYP +I+LTWQ
Sbjct: 184 LEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQL 243
Query: 787 EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 966
G++ +QDMELVETRP+GDGTFQKWA++VVP G+EQ+YTC V HEGL EPLTLRW+PP
Sbjct: 244 NGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPS 303
Query: 967 XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKR--SGEKGGSYTQAAGSDSAQGS 1119
K+R +G KGG Y A GS S++ S
Sbjct: 304 TDSYMVIVAVLGVLGAMAIIGAVVAFVMKRRRNTGGKGGDYALAPGSQSSEMS 356
>ref|XP_003086847.1| PREDICTED: h-2 class I histocompatibility antigen, D-37 alpha
chain-like [Mus musculus].
Length = 377
Score = 425 bits (1092), Expect = e-119
Identities = 207/331 (62%), Positives = 237/331 (71%), Gaps = 2/331 (0%)
Frame = +1
Query: 136 HSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYWDE 315
HSLRYF T VSRP G+PRFI VGYVDDTQFVRFDSD+ NPRMEPRA WIEQEG EYW+
Sbjct: 42 HSLRYFHTVVSRPGLGEPRFIIVGYVDDTQFVRFDSDSENPRMEPRARWIEQEGPEYWER 101
Query: 316 ETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDGAD 495
ETR A + FRVNL L GYYNQS+ SHTLQ MYGCDVGPD LRGY Q+AYDG D
Sbjct: 102 ETRKARDMGRNFRVNLRTLLGYYNQSKDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQD 161
Query: 496 YIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQRA 675
YI+LNEDLRSWTA + A+ I+K K EA DEA Q R+YL+G CVEWL YLQ+G+ TL R+
Sbjct: 162 YISLNEDLRSWTATNLASHISKCKSEAVDEAHQQRAYLQGPCVEWLHTYLQLGSETLLRS 221
Query: 676 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 855
+PPK HVTRHP + VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 222 DPPKAHVTRHPRPEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 281
Query: 856 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1035
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW+PP
Sbjct: 282 KWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEPPPSTVSNMVIIAVLVVLGAVIVIVAV 341
Query: 1036 XXXWRKKRSGEKG--GSYTQAAGSDSAQGSD 1122
K+R + G G Y GS S Q SD
Sbjct: 342 VAFVMKRRKTQVGVKGCYAHVLGSKSFQTSD 372
>ref|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].
Length = 368
Score = 424 bits (1091), Expect = e-119
Identities = 205/338 (60%), Positives = 245/338 (72%), Gaps = 2/338 (0%)
Frame = +1
Query: 124 REGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQE 303
R GPHS+RYF+TAVSRP G+P FISVGYVDDTQFVRFD DA NPRMEPRAPW+EQEG E
Sbjct: 24 RPGPHSMRYFETAVSRPGLGEPWFISVGYVDDTQFVRFDGDAENPRMEPRAPWMEQEGPE 83
Query: 304 YWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAY 483
YW+ ET+ A G Q F+ +L NL YYNQS GSHT Q MYGCD+G D LRGY Q AY
Sbjct: 84 YWERETQIAKGHEQGFQGSLRNLLHYYNQSAGGSHTFQRMYGCDLGSDGRLLRGYWQFAY 143
Query: 484 DGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNT 663
DG+DYIALN+DL++WTAAD AAQIT+R+WE AE +R+YLE C+EWL++YL++G T
Sbjct: 144 DGSDYIALNQDLKTWTAADLAAQITRRRWEQGGVAETLRAYLEDPCLEWLRRYLELGKET 203
Query: 664 LQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGD 843
L R +PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GD
Sbjct: 204 LLRTDPPKVHVTHHPRSEDDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGD 263
Query: 844 GTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP-PQXXXXXXXXXXXXXXXXXXX 1020
GTFQKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P P
Sbjct: 264 GTFQKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEPRPSRDSNMVIIAVLVVLGVVII 323
Query: 1021 XXXXXXXXWRKKRS-GEKGGSYTQAAGSDSAQGSDVSL 1131
+ +R G K +Y A GS+S QGS + L
Sbjct: 324 IGAMVPFVLKSRRKIGGKEENYALAGGSNSVQGSALFL 361
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 64,899,754
Number of extensions: 1935739
Number of successful extensions: 11064
Number of sequences better than 1.0e-05: 130
Number of HSP's gapped: 10832
Number of HSP's successfully gapped: 140
Length of query: 639
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 531
Effective length of database: 12,373,671
Effective search space: 6570419301
Effective search space used: 6570419301
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000642
(1919 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1207 0.0
gb|GL896105.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 573 e-160
Sscrofa_Chr14 444 e-122
Sscrofa_Chr13 438 e-120
Sscrofa_Chr04 438 e-120
Sscrofa_ChrX 430 e-117
Sscrofa_Chr03 416 e-113
Sscrofa_Chr11 404 e-110
Sscrofa_Chr01 404 e-110
Sscrofa_Chr09 398 e-108
>Sscrofa_Chr07
|| Length = 134764511
Score = 1207 bits (609), Expect = 0.0
Identities = 609/609 (100%)
Strand = Plus / Minus
Query: 1146 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24642186 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 24642127
Query: 1206 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24642126 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 24642067
Query: 1266 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccatgtcccctctt 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24642066 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccatgtcccctctt 24642007
Query: 1326 caccctgacctgtgttctctttcctgatccactttccagctccaacaggttggggggagg 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24642006 caccctgacctgtgttctctttcctgatccactttccagctccaacaggttggggggagg 24641947
Query: 1386 caggcggcaatggaccatctccatccttatgctaagttcattgccctgactggtgactgc 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24641946 caggcggcaatggaccatctccatccttatgctaagttcattgccctgactggtgactgc 24641887
Query: 1446 ggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaa 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24641886 ggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaa 24641827
Query: 1506 aggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtaggt 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24641826 aggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtaggt 24641767
Query: 1566 ttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaata 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24641766 ttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaata 24641707
Query: 1626 atgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttgcac 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24641706 atgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttgcac 24641647
Query: 1686 aatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttacttat 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24641646 aatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttacttat 24641587
Query: 1746 tactcagcc 1754
|||||||||
Sbjct: 24641586 tactcagcc 24641578
Score = 553 bits (279), Expect = e-154
Identities = 279/279 (100%)
Strand = Plus / Minus
Query: 674 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643497 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 24643438
Query: 734 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643437 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 24643378
Query: 794 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643377 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 24643318
Query: 854 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643317 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24643258
Query: 914 agcacgagggcctgcaggagcccctcaccctgagatggg 952
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24643257 agcacgagggcctgcaggagcccctcaccctgagatggg 24643219
Score = 521 bits (263), Expect = e-145
Identities = 270/271 (99%), Gaps = 1/271 (0%)
Strand = Plus / Minus
Query: 131 gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagcccc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644858 gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagcccc 24644799
Query: 191 gtttcatctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 250
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644798 gtt-catctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 24644740
Query: 251 cgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattggg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644739 cgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattggg 24644680
Query: 311 atgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaacc 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644679 atgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaacc 24644620
Query: 371 tgcgcggctactacaaccagagcgaggccgg 401
|||||||||||||||||||||||||||||||
Sbjct: 24644619 tgcgcggctactacaaccagagcgaggccgg 24644589
Score = 521 bits (263), Expect = e-145
Identities = 275/279 (98%)
Strand = Plus / Minus
Query: 674 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 733
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 24685333 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24685274
Query: 734 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 793
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24685273 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24685214
Query: 794 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 853
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685213 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24685154
Query: 854 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685153 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24685094
Query: 914 agcacgagggcctgcaggagcccctcaccctgagatggg 952
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24685093 agcacgagggcctgcaggagcccctcaccctgagatggg 24685055
Score = 513 bits (259), Expect = e-142
Identities = 274/279 (98%)
Strand = Plus / Minus
Query: 674 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 733
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 24722401 cagagcctccaaagacacatgtgacccactaccccagctctgacctgggggtcaccctga 24722342
Query: 734 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 793
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24722341 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24722282
Query: 794 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 853
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722281 aagaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24722222
Query: 854 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722221 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24722162
Query: 914 agcacgagggcctgcaggagcccctcaccctgagatggg 952
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24722161 agcacgagggcctgcaggagcccctcaccctgagatggg 24722123
Score = 513 bits (259), Expect = e-142
Identities = 274/279 (98%)
Strand = Plus / Minus
Query: 674 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 733
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 24749848 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 24749789
Query: 734 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 793
|||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 24749788 ggtgctgggctctgggcttccaccctaaggagatctccctgacctggcagcgggagggcc 24749729
Query: 794 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 853
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749728 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24749669
Query: 854 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749668 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24749609
Query: 914 agcacgagggcctgcaggagcccctcaccctgagatggg 952
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24749608 agcacgagggcctgcaggagcccctcaccctgagatggg 24749570
Score = 513 bits (259), Expect = e-142
Identities = 274/279 (98%)
Strand = Plus / Minus
Query: 674 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 733
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 26675878 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 26675819
Query: 734 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 793
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 26675818 ggtgctgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggcc 26675759
Query: 794 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 853
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675758 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 26675699
Query: 854 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675698 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 26675639
Query: 914 agcacgagggcctgcaggagcccctcaccctgagatggg 952
|||||||||||||||||||||||||||||||||||||||
Sbjct: 26675638 agcacgagggcctgcaggagcccctcaccctgagatggg 26675600
Score = 505 bits (255), Expect = e-140
Identities = 273/279 (97%)
Strand = Plus / Minus
Query: 674 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 733
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 24706186 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24706127
Query: 734 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 793
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24706126 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24706067
Query: 794 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 853
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706066 aggaccagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttcc 24706007
Query: 854 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706006 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24705947
Query: 914 agcacgagggcctgcaggagcccctcaccctgagatggg 952
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24705946 agcacgagggcctgcaggagcccctcaccctgagatggg 24705908
Score = 498 bits (251), Expect = e-138
Identities = 273/279 (97%), Gaps = 1/279 (0%)
Strand = Plus / Minus
Query: 674 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 733
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 24657273 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttga 24657214
Query: 734 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 793
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 24657213 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggc 24657154
Query: 794 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 853
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 24657153 aggaccagagccaggacatggagctggtggagaccaggccctca-gggatgggaccttcc 24657095
Query: 854 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24657094 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24657035
Query: 914 agcacgagggcctgcaggagcccctcaccctgagatggg 952
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24657034 agcacgagggcctgcaggagcccctcaccctgagatggg 24656996
Score = 462 bits (233), Expect = e-127
Identities = 266/277 (96%)
Strand = Plus / Minus
Query: 400 gggtctcacaccctccagagcatgtacggctgcgacgtggggccagactggctcttcctc 459
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 24644365 gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 24644306
Query: 460 cgcgggtacagtcaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 519
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644305 cgcgggtacagtcagtttggctacgacggcgccgattacatcgccctgaacgaggacctg 24644246
Query: 520 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagtgggaggcggcc 579
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 24644245 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 24644186
Query: 580 gatgaggcggagcaaatgagaagctacctggagggcgcgtgtgtggagtggctccagaaa 639
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24644185 gatgcggcggagcaaatgagaagctacctggagggcgcgtgtgtggtgtggctccagaaa 24644126
Query: 640 tacctgcagatggggaataacacgctgcagcgcgcag 676
|||||| ||||||||||||||||||||||||||||||
Sbjct: 24644125 tacctggagatggggaataacacgctgcagcgcgcag 24644089
Score = 426 bits (215), Expect = e-116
Identities = 263/279 (94%)
Strand = Plus / Plus
Query: 674 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 733
|||| ||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 27616062 cagatcctccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttga 27616121
Query: 734 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 793
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 27616122 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggc 27616181
Query: 794 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 853
||||||||||||| ||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 27616182 aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 27616241
Query: 854 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616242 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 27616301
Query: 914 agcacgagggcctgcaggagcccctcaccctgagatggg 952
|||||||||||||||||||||||||||||||||||||||
Sbjct: 27616302 agcacgagggcctgcaggagcccctcaccctgagatggg 27616340
Score = 420 bits (212), Expect = e-114
Identities = 287/312 (91%)
Strand = Plus / Plus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 12277709 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 12277768
Query: 1503 caaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggta 1562
| |||||||||||||||||| ||| |||| |||| |||| ||||| |||||||||||| |
Sbjct: 12277769 cgaaggcagggttcctaaccgaggaaaaaaagcccacccgccggcacagttccaagggca 12277828
Query: 1563 ggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaa 1622
|||||||||| || |||| |||||||||| |||||||||||| |||||||||| |||||
Sbjct: 12277829 ggtttagaaacagagaaaagggcttacccggtggcacagttctgagggcaagttctaaaa 12277888
Query: 1623 ataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttg 1682
||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||| ||||
Sbjct: 12277889 ataatgaggctcacctgctaatccgacaacaatagcaacaataacaaaatgaaggctttg 12277948
Query: 1683 cacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttact 1742
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12277949 cacactagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttatttact 12278008
Query: 1743 tattactcagcc 1754
||||||||||||
Sbjct: 12278009 tattactcagcc 12278020
Score = 412 bits (208), Expect = e-112
Identities = 256/272 (94%)
Strand = Plus / Minus
Query: 130 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 189
||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct: 24627128 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 24627069
Query: 190 cgtttcatctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 249
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24627068 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24627009
Query: 250 ccgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattgg 309
|| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 24627008 cccaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggactattgg 24626949
Query: 310 gatgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaac 369
||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| | |
Sbjct: 24626948 gatcgggagacgcggaacgtcatgggcagcgcacagactgaccgagtgaacctgaagacc 24626889
Query: 370 ctgcgcggctactacaaccagagcgaggccgg 401
||||||||||||||||||||||||||||||||
Sbjct: 24626888 ctgcgcggctactacaaccagagcgaggccgg 24626857
Score = 412 bits (208), Expect = e-112
Identities = 256/272 (94%)
Strand = Plus / Minus
Query: 130 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 189
||||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||
Sbjct: 24751227 ggtccccactccctgagctatttcttcaccgccgtgtcccggcccgaccgcggggactcc 24751168
Query: 190 cgtttcatctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 249
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24751167 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24751108
Query: 250 ccgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattgg 309
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 24751107 ccgaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggagtattgg 24751048
Query: 310 gatgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaac 369
||||||||||||||||||||||||| || |||||||| | ||||||||||||||| | |
Sbjct: 24751047 gatgaggagacgcggaacgccatggacaacgcacagattaaccgagtgaacctgaagacc 24750988
Query: 370 ctgcgcggctactacaaccagagcgaggccgg 401
||||||||||||||||||||||||||||||||
Sbjct: 24750987 ctgcgcggctactacaaccagagcgaggccgg 24750956
Score = 387 bits (195), Expect = e-104
Identities = 252/271 (92%)
Strand = Plus / Minus
Query: 682 ccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctgaggtgctgg 741
|||||| || |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 27628600 ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 27628541
Query: 742 gccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggaccag 801
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct: 27628540 gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 27628481
Query: 802 agccaagacatggagctggtggagaccaggccctcaggggatgggaccttccagaagtgg 861
||||| ||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27628480 agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 27628421
Query: 862 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 921
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 27628420 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 27628361
Query: 922 ggcctgcaggagcccctcaccctgagatggg 952
|||||||||||||| ||||||||||||||||
Sbjct: 27628360 ggcctgcaggagccactcaccctgagatggg 27628330
Score = 369 bits (186), Expect = 4e-99
Identities = 252/274 (91%)
Strand = Plus / Plus
Query: 679 cctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctgaggtgc 738
||||||||||| |||||||||||||||||| || |||| ||||| || || |||
Sbjct: 27604571 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 27604630
Query: 739 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 798
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 27604631 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27604690
Query: 799 cagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 858
|||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 27604691 cagacccaggacatggagctcgtggagaccaggccttcaggggatgggaccttccagaag 27604750
Query: 859 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 918
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 27604751 tgggcggccctggtggtgccttctggagaggagcagagctacacctgccaggtgcagcac 27604810
Query: 919 gagggcctgcaggagcccctcaccctgagatggg 952
||||||||||||||||||||||||||||||||||
Sbjct: 27604811 gagggcctgcaggagcccctcaccctgagatggg 27604844
Score = 355 bits (179), Expect = 6e-95
Identities = 209/219 (95%)
Strand = Plus / Minus
Query: 1146 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 1205
||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 24748521 agtgtgagacaactgccttgtggggactgagggacacaagatttgttcacatcccacttt 24748462
Query: 1206 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 1265
||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 24748461 gtgacttcagatcccctgactcctgtttctgcagctgcatctgaaagggtctgtgttcct 24748402
Query: 1266 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccatgtcccctctt 1325
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 24748401 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccacgtcccctcct 24748342
Query: 1326 caccctgacctgtgttctctttcctgatccactttccag 1364
||||||||||||||||||||| |||||||| ||||||||
Sbjct: 24748341 caccctgacctgtgttctcttccctgatcctctttccag 24748303
Score = 349 bits (176), Expect = 4e-93
Identities = 248/272 (91%)
Strand = Plus / Minus
Query: 130 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 189
||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |
Sbjct: 24686712 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 24686653
Query: 190 cgtttcatctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 249
|| |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 24686652 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 24686593
Query: 250 ccgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattgg 309
|||||||||||||||||||| |||| |||||||||| |||||||||||||||| ||||||
Sbjct: 24686592 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 24686533
Query: 310 gatgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaac 369
||||||||||||||||| | || || || ||||||||||| | ||||| |||||||| |
Sbjct: 24686532 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 24686473
Query: 370 ctgcgcggctactacaaccagagcgaggccgg 401
||||||||||||||||||||||||||||||||
Sbjct: 24686472 ctgcgcggctactacaaccagagcgaggccgg 24686441
Score = 339 bits (171), Expect = 3e-90
Identities = 219/235 (93%)
Strand = Plus / Minus
Query: 1146 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 1205
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 24704880 agtgtgagacagctgccttgtggggactgagtgacacaagatttgttcacgtcccacttt 24704821
Query: 1206 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 1265
||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct: 24704820 gtgacttcagatcccctgactcctatttctgcagctgcatctgaatgtgtctgtgttcct 24704761
Query: 1266 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccatgtcccctctt 1325
||| ||||| ||||||||||||||||| |||||||||||||| |||||| |||||||| |
Sbjct: 24704760 atgcgcatcatgagaggaggtggggacactggcccagccctgtcccccacgtcccctcct 24704701
Query: 1326 caccctgacctgtgttctctttcctgatccactttccagctccaacaggttgggg 1380
||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||
Sbjct: 24704700 caccctgacctgtgttctcttccctgatccacttttcagctccagcaggtggggg 24704646
Score = 335 bits (169), Expect = 5e-89
Identities = 250/277 (90%)
Strand = Plus / Minus
Query: 400 gggtctcacaccctccagagcatgtacggctgcgacgtggggccagactggctcttcctc 459
||||||||||||||||||||||||| |||||| || |||| |||||| ||||| |||||
Sbjct: 24686217 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 24686158
Query: 460 cgcgggtacagtcaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 519
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686157 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 24686098
Query: 520 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagtgggaggcggcc 579
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 24686097 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 24686038
Query: 580 gatgaggcggagcaaatgagaagctacctggagggcgcgtgtgtggagtggctccagaaa 639
|||| ||||||||| ||| ||||||||| |||| ||||||||||| ||||| | |
Sbjct: 24686037 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 24685978
Query: 640 tacctgcagatggggaataacacgctgcagcgcgcag 676
|||||| |||||||||| ||||||||||||||||||
Sbjct: 24685977 tacctggagatggggaaggacacgctgcagcgcgcag 24685941
Score = 327 bits (165), Expect = 1e-86
Identities = 249/277 (89%)
Strand = Plus / Minus
Query: 400 gggtctcacaccctccagagcatgtacggctgcgacgtggggccagactggctcttcctc 459
|||||||||||||||||||| |||| |||||| || |||| |||||| ||||| |||||
Sbjct: 24750731 gggtctcacaccctccagagaatgtttggctgctacttgggaccagacgggctcctcctc 24750672
Query: 460 cgcgggtacagtcaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 519
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24750671 cgcgggtacgatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 24750612
Query: 520 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagtgggaggcggcc 579
|||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||
Sbjct: 24750611 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagcaggaggaggcc 24750552
Query: 580 gatgaggcggagcaaatgagaagctacctggagggcgcgtgtgtggagtggctccagaaa 639
|||| |||||||| ||||| ||||||||| ||||| |||||||||||| ||||| |||
Sbjct: 24750551 gatgtggcggagcggatgaggagctacctgcagggcacgtgtgtggagtcgctccgcaaa 24750492
Query: 640 tacctgcagatggggaataacacgctgcagcgcgcag 676
|||||| |||||||||| ||||||||||||||||||
Sbjct: 24750491 tacctggagatggggaaggacacgctgcagcgcgcag 24750455
Score = 325 bits (164), Expect = 5e-86
Identities = 271/306 (88%), Gaps = 3/306 (0%)
Strand = Plus / Minus
Query: 1447 gggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaaa 1506
|||||||||||| | |||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 20392506 gggagccgaggagatacagaaggccaaggaagggaactagcctgatggcacagttccgaa 20392447
Query: 1507 ggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtaggtt 1566
|||||||||||| | || |||| ||||||||| ||||| | |||| |||| |||||
Sbjct: 20392446 ggcagggttcctgaggaa---aaaaaagcctacccgccggcaccgttctgagggcaggtt 20392390
Query: 1567 tagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaataa 1626
|||||||||||||| |||||||| | ||||| |||| |||||||||| |||||||||
Sbjct: 20392389 tagaaatagggaaaaaggcttaccaggcggcactgttctgagggcaagttctaaaaataa 20392330
Query: 1627 tgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttgcaca 1686
||||||||||||||||||||||| |||||| ||||||||| |||| ||||| ||||||||
Sbjct: 20392329 tgaggctcacctgctaacccgacaacaacgacaacaataataaaatgaaggctttgcaca 20392270
Query: 1687 atagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttacttatt 1746
|||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 20392269 atagtgcaaggataaaaattgtttcttggaaaattcagtctttcctgttatttacttatt 20392210
Query: 1747 actcag 1752
||||||
Sbjct: 20392209 actcag 20392204
Score = 319 bits (161), Expect = 3e-84
Identities = 248/277 (89%)
Strand = Plus / Minus
Query: 400 gggtctcacaccctccagagcatgtacggctgcgacgtggggccagactggctcttcctc 459
||||||||||||||||||||| ||| |||||||||||||| |||||| ||||| |||||
Sbjct: 24658161 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24658102
Query: 460 cgcgggtacagtcaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 519
||| ||||| | | |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24658101 cgccggtaccgacgggacacctacgacggcgccgattacgtcgccctgaacgaggacctg 24658042
Query: 520 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagtgggaggcggcc 579
|||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||
Sbjct: 24658041 cgctcctggaccgcggcggacacggcggctcagatctccaaatgcaagtgggagacggcc 24657982
Query: 580 gatgaggcggagcaaatgagaagctacctggagggcgcgtgtgtggagtggctccagaaa 639
||| ||||||||| ||| ||||||||| ||||| |||||||||||||||| ||||||
Sbjct: 24657981 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggcttcagaaa 24657922
Query: 640 tacctgcagatggggaataacacgctgcagcgcgcag 676
|||||| |||||||| | ||||||||||||||||||
Sbjct: 24657921 tacctggagatgggggaggacacgctgcagcgcgcag 24657885
Score = 315 bits (159), Expect = 5e-83
Identities = 216/235 (91%)
Strand = Plus / Minus
Query: 1146 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 1205
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 24655959 agtgtgagacagctgccttgtggggactgagggacacaagatttgttcacgtcccacttt 24655900
Query: 1206 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 1265
||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 24655899 gtgacttcagatcccctgactcctgtttctgcagctgcctctgaaagtgtctgtgtttct 24655840
Query: 1266 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccatgtcccctctt 1325
||||||||| |||||| ||||||| || |||||| | ||||| |||||| ||||||| |
Sbjct: 24655839 atgagcatcatgagagtaggtgggaacactggcctaaccctgtcccccacatcccctcct 24655780
Query: 1326 caccctgacctgtgttctctttcctgatccactttccagctccaacaggttgggg 1380
||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||
Sbjct: 24655779 caccctgacctgtgttctcttccctgatccacttttcagctccagcaggtggggg 24655725
Score = 311 bits (157), Expect = 8e-82
Identities = 218/237 (91%), Gaps = 1/237 (0%)
Strand = Plus / Plus
Query: 1146 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 1205
|||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct: 24604646 agtgtgagacagctgccttgtggggactgagtgacaca-gatttgttcacgtcccacttt 24604704
Query: 1206 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 1265
||||||||||| |||||||||||| |||||||||| || | |||| | |||||||| |||
Sbjct: 24604705 gtgacttcagatcccctgactcctgtttctgcagcagcatttgaatgtgtctgtgtccct 24604764
Query: 1266 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccatgtcccctctt 1325
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 24604765 atgagcatcctgagaggaggtggggaccctggcccagtcctgccccccacgtcccctcct 24604824
Query: 1326 caccctgacctgtgttctctttcctgatccactttccagctccaacaggttgggggg 1382
||||||||||||||||||||| |||||||| |||||||| |||| ||||| ||||||
Sbjct: 24604825 caccctgacctgtgttctcttccctgatcctctttccagttccagcaggtggggggg 24604881
Score = 311 bits (157), Expect = 8e-82
Identities = 247/277 (89%)
Strand = Plus / Minus
Query: 400 gggtctcacaccctccagagcatgtacggctgcgacgtggggccagactggctcttcctc 459
||||||||||||||||||||| ||| |||||||||||||| |||||| ||||| |||||
Sbjct: 24723290 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24723231
Query: 460 cgcgggtacagtcaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 519
||| ||||| | | ||||| |||||||||||||||||| ||||||||||| ||||||||
Sbjct: 24723230 cgccggtaccgacgggacgtctacgacggcgccgattaggtcgccctgaacaaggacctg 24723171
Query: 520 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagtgggaggcggcc 579
||||||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||
Sbjct: 24723170 cgctcctggaccgcggctgacacggcggctcagatctccaagcacaagtgggagacggcc 24723111
Query: 580 gatgaggcggagcaaatgagaagctacctggagggcgcgtgtgtggagtggctccagaaa 639
||| ||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct: 24723110 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggctccagaaa 24723051
Query: 640 tacctgcagatggggaataacacgctgcagcgcgcag 676
|||||| |||||||| | ||||||||||||||||||
Sbjct: 24723050 tacctggagatgggggaggacacgctgcagcgcgcag 24723014
Score = 307 bits (155), Expect = 1e-80
Identities = 272/307 (88%), Gaps = 3/307 (0%)
Strand = Plus / Minus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 80560412 tgcggggagccaaggagatgcaggaggccaaggaagggaactagcctgacggcacagttc 80560353
Query: 1503 caaaggcagggttcctaaccaagggaaaaga-gcctacccaccggcgcagttccaagggt 1561
| |||||||||||||||||| ||| |||| | ||||||| ||||| ||||||||||||
Sbjct: 80560352 cgaaggcagggttcctaaccgaggaaaaaaaagcctacctgccggcacagttccaagggc 80560293
Query: 1562 aggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaa 1621
|||||||||||||||| || |||||||||| ||||||||||| |||||||||| ||||
Sbjct: 80560292 aggtttagaaataggggaaagggcttacccggtggcacagttatgagggcaagttctaaa 80560233
Query: 1622 aataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggtttt 1681
|||||||||||||||||||||||| ||| |||| ||| |||||||||||| ||||| |||
Sbjct: 80560232 aataatgaggctcacctgctaacctgacaacaatggctacaataacaaaatgaaggcttt 80560173
Query: 1682 gcacaatagtgcaagaataaaaattgcttcttgg-aaaattcagtctttcctgttgttta 1740
|||||| ||||||||||| ||||| |||||| || |||| |||||||||| ||| ||||
Sbjct: 80560172 gcacaacagtgcaagaat-aaaatcgcttctcggaaaaaatcagtctttcttgtcattta 80560114
Query: 1741 cttatta 1747
|||||||
Sbjct: 80560113 cttatta 80560107
Score = 303 bits (153), Expect = 2e-79
Identities = 232/257 (90%), Gaps = 1/257 (0%)
Strand = Plus / Plus
Query: 1496 acagttccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttcc 1555
|||||||| |||||||||||||||||| ||| |||| ||||||||||||||| |||||||
Sbjct: 33055141 acagttccgaaggcagggttcctaaccgaggaaaaaaagcctacccaccggcacagttcc 33055200
Query: 1556 aagggtaggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagt 1615
|||| ||||| ||||||||||||| |||||||||| | |||||||||| |||||||||
Sbjct: 33055201 gagggcaggttcagaaatagggaaaagggcttaccccgcagcacagttccgagggcaagt 33055260
Query: 1616 tataaaaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaa 1675
| |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| |||
Sbjct: 33055261 tctaaaaacaatgaggctcacctgctaacccgacaacaac-gcaacaataacaaaatgaa 33055319
Query: 1676 ggttttgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgtt 1735
|| ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 33055320 ggctttgcacaacagtgcaagaatggaaatcgcttcttggaaaattcagtctttcctgtt 33055379
Query: 1736 gtttacttattactcag 1752
||||||||||| ||||
Sbjct: 33055380 atttacttattattcag 33055396
Score = 299 bits (151), Expect = 3e-78
Identities = 202/219 (92%)
Strand = Plus / Minus
Query: 1146 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 1205
||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 24721089 agtgtgagagagctgccttgtagggactgagggacacaagatttgttcacgtcccacttt 24721030
Query: 1206 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 1265
|||||| |||| |||||||||| | |||||||||| || |||||||| ||||||||||||
Sbjct: 24721029 gtgactccagatcccctgactcttgtttctgcagcagcatctgaaagtgtctgtgttcct 24720970
Query: 1266 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccatgtcccctctt 1325
||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 24720969 atgagcatcatgagaagaggtggggaccctggcccagtcctgccccccatgtccccttct 24720910
Query: 1326 caccctgacctgtgttctctttcctgatccactttccag 1364
||||||||||||||||||||| |||||||| ||||||||
Sbjct: 24720909 caccctgacctgtgttctcttccctgatcctctttccag 24720871
Score = 287 bits (145), Expect = 1e-74
Identities = 184/197 (93%)
Strand = Plus / Minus
Query: 130 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 189
|||||||||||||| || ||||| |||||||||||||||||||||||||||| |||||
Sbjct: 24707549 ggtccccactccctaagctattttttcaccgccgtgtcccggcccgaccgcggggagccc 24707490
Query: 190 cgtttcatctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 249
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24707489 cgtttcatcgccgtcggctacgtgaacgacacgcagttcgtgcggttcgacagcgacgcc 24707430
Query: 250 ccgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattgg 309
||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct: 24707429 ccgaatccgcggatggagccgcgggcgccgtggatggagcaggaggggcaggactgttgg 24707370
Query: 310 gatgaggagacgcggaa 326
||| || ||||||||||
Sbjct: 24707369 gatcagcagacgcggaa 24707353
Score = 280 bits (141), Expect = 3e-72
Identities = 243/277 (87%)
Strand = Plus / Minus
Query: 400 gggtctcacaccctccagagcatgtacggctgcgacgtggggccagactggctcttcctc 459
||||||||||||||||||| || ||| |||||||||||||| |||||| ||||| |||||
Sbjct: 24707089 gggtctcacaccctccagaccaagtagggctgcgacgtgggaccagacgggctcctcctc 24707030
Query: 460 cgcgggtacagtcaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 519
| | ||||||| ||||||||||||| |||| | |||||| ||||||||||||||||||||
Sbjct: 24707029 ctctggtacagacaggacgcctacggcggccctgattacgtcgccctgaacgaggacctg 24706970
Query: 520 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagtgggaggcggcc 579
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 24706969 cgctcctggaccgcggcggacacggcggctcagatcgccaagcgcaagtgggaggcggcc 24706910
Query: 580 gatgaggcggagcaaatgagaagctacctggagggcgcgtgtgtggagtggctccagaaa 639
||| ||| ||||| ||| ||||||||| ||||| ||||||||||||||||| | |
Sbjct: 24706909 aatgtggcagagcaggagaggagctacctgcagggccggtgtgtggagtggctccgcaga 24706850
Query: 640 tacctgcagatggggaataacacgctgcagcgcgcag 676
||| || |||||| || |||||||||||| |||||
Sbjct: 24706849 tacgtggagatggcaaaggacacgctgcagcacgcag 24706813
Score = 272 bits (137), Expect = 7e-70
Identities = 197/219 (89%), Gaps = 11/219 (5%)
Strand = Plus / Minus
Query: 1146 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 1205
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 24684019 agtgtgagacagctgccttgtgggaactgagggacacaagatttgttcacgtcccacttt 24683960
Query: 1206 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 1265
|||| | |||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24683959 gtgaatccagatcccctgactcctgtttctgcagctgcctctgaaagggtctgtgttcct 24683900
Query: 1266 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccatgtcccctctt 1325
|||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct: 24683899 atgagcatcctgagaggaggtggggaccctgg-----------cccccacgtcccctcct 24683851
Query: 1326 caccctgacctgtgttctctttcctgatccactttccag 1364
||||||||||||||||||||| | |||||| ||||||||
Sbjct: 24683850 caccctgacctgtgttctcttccatgatcctctttccag 24683812
Score = 264 bits (133), Expect = 2e-67
Identities = 226/257 (87%)
Strand = Plus / Minus
Query: 1496 acagttccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttcc 1555
|||||||| |||||||||| ||||||| ||| ||| ||||||||| ||||| |||||||
Sbjct: 50593875 acagttccgaaggcagggtacctaaccgaggagaaaaagcctacccgccggcacagttcc 50593816
Query: 1556 aagggtaggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagt 1615
|||| ||||||||||| ||||||| |||||||| | | |||||||||| |||||||||
Sbjct: 50593815 gagggcaggtttagaaacagggaaaagggcttactcggcagcacagttccgagggcaagt 50593756
Query: 1616 tataaaaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaa 1675
| || || ||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 50593755 tctataagcaatgaggctcacctgctaacccgacaacaacggcaacaataacaaaatgaa 50593696
Query: 1676 ggttttgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgtt 1735
|| ||||| ||| ||||||||||||||||| |||||| |||||| |||||||||||||||
Sbjct: 50593695 ggctttgcgcaacagtgcaagaataaaaatcgcttctcggaaaaatcagtctttcctgtt 50593636
Query: 1736 gtttacttattactcag 1752
||||||||||| ||||
Sbjct: 50593635 atttacttattattcag 50593619
Score = 262 bits (132), Expect = 6e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 1 gcggttctaaactctccatccattcgcctcgactccgcttctctccagactccgaggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24645306 gcggttctaaactctccatccattcgcctcgactccgcttctctccagactccgaggctg 24645247
Query: 61 aggatcatggggccccgagccctcttcttgctgctgtcggggaccctggccctgactggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24645246 aggatcatggggccccgagccctcttcttgctgctgtcggggaccctggccctgactggt 24645187
Query: 121 acccgggagggt 132
||||||||||||
Sbjct: 24645186 acccgggagggt 24645175
Score = 260 bits (131), Expect = 3e-66
Identities = 197/219 (89%)
Strand = Plus / Minus
Query: 1146 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 1205
||||||||||||||||||||||||||| ||| | || ||||| |||||| |||||||||
Sbjct: 26674560 agtgtgagacagctgccttgtggggaccaagtgttacgagattcgttcacatcccacttt 26674501
Query: 1206 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 1265
||||||||||| |||||||||||| |||||||||| || | ||| | |||||||| |||
Sbjct: 26674500 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 26674441
Query: 1266 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccatgtcccctctt 1325
||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct: 26674440 atgagcatcatgagaggaggtggggaccctggcccagccctgtcccccacgtcccctcct 26674381
Query: 1326 caccctgacctgtgttctctttcctgatccactttccag 1364
||||||||||||||||||||| |||||||| ||||||||
Sbjct: 26674380 caccctgacctgtgttctcttccctgatcctctttccag 26674342
Score = 250 bits (126), Expect = 2e-63
Identities = 234/270 (86%)
Strand = Plus / Minus
Query: 130 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 189
||||||||||||||||| ||| || |||| | ||||||||||| | ||||||| |||||
Sbjct: 24723781 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24723722
Query: 190 cgtttcatctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 249
|| |||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 24723721 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24723662
Query: 250 ccgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattgg 309
||||| | | ||| ||||||||||||| | |||| |||||||||||| ||||||||||
Sbjct: 24723661 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagtattgg 24723602
Query: 310 gatgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaac 369
|| ||||||||||||| | || || || |||||||||| || ||| ||| ||||||| |
Sbjct: 24723601 gacgaggagacgcggatcagcaaggacaacgcacagactctctgagggaaactgaacacc 24723542
Query: 370 ctgcgcggctactacaaccagagcgaggcc 399
||||||||||||||||||||||||||||||
Sbjct: 24723541 ctgcgcggctactacaaccagagcgaggcc 24723512
Score = 242 bits (122), Expect = 6e-61
Identities = 234/270 (86%), Gaps = 1/270 (0%)
Strand = Plus / Minus
Query: 130 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 189
||||||||||||||||| ||| || |||| | ||||||||||| | ||||||| |||||
Sbjct: 24658651 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24658592
Query: 190 cgtttcatctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 249
|| |||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 24658591 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24658532
Query: 250 ccgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattgg 309
||||| | | ||| ||||||||||||| | |||| |||||||||||| |||||| |||
Sbjct: 24658531 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagta-tgg 24658473
Query: 310 gatgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaac 369
|| ||||||||||||| | || || || |||||||||| |||||| ||| ||||||| |
Sbjct: 24658472 gacgaggagacgcggatcagcaaggacaacgcacagactctccgagggaaactgaacacc 24658413
Query: 370 ctgcgcggctactacaaccagagcgaggcc 399
||||||||||||||||||||||||||||||
Sbjct: 24658412 ctgcgcggctactacaaccagagcgaggcc 24658383
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 952 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643101 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 24643042
Query: 1012 gttgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643041 gttgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24642988
Score = 210 bits (106), Expect = 2e-51
Identities = 112/114 (98%)
Strand = Plus / Minus
Query: 952 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 1011
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24749451 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 24749392
Query: 1012 gttgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 1065
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749391 gtcgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24749338
Score = 200 bits (101), Expect = 2e-48
Identities = 164/185 (88%)
Strand = Plus / Minus
Query: 136 cactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccccgtttc 195
|||||| ||||||||||| |||| | |||||||||||||| || |||| ||||||| | |
Sbjct: 27210466 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27210407
Query: 196 atctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccgaat 255
| |||||||| ||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 27210406 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27210347
Query: 256 ccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattgggatgag 315
||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 27210346 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27210287
Query: 316 gagac 320
|||||
Sbjct: 27210286 gagac 27210282
Score = 200 bits (101), Expect = 2e-48
Identities = 164/185 (88%)
Strand = Plus / Minus
Query: 136 cactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccccgtttc 195
|||||| ||||||||||| |||| | |||||||||||||| || |||| ||||||| | |
Sbjct: 27629992 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27629933
Query: 196 atctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccgaat 255
| |||||||| ||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 27629932 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27629873
Query: 256 ccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattgggatgag 315
||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 27629872 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27629813
Query: 316 gagac 320
|||||
Sbjct: 27629812 gagac 27629808
Score = 194 bits (98), Expect = 1e-46
Identities = 110/114 (96%)
Strand = Plus / Plus
Query: 952 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 1011
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24603747 gaccctcctcagccccccatccccatcgtgggcatcattgttggcctggttctcgtcctg 24603806
Query: 1012 gttgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 1065
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24603807 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 24603860
Score = 194 bits (98), Expect = 1e-46
Identities = 110/114 (96%)
Strand = Plus / Plus
Query: 952 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 1011
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 27616458 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 27616517
Query: 1012 gttgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 1065
|| ||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 27616518 gtcgctggagccgtggtgactggagttgtgatctggaggaagaagtgctcaggt 27616571
Score = 192 bits (97), Expect = 5e-46
Identities = 112/116 (96%), Gaps = 1/116 (0%)
Strand = Plus / Minus
Query: 1805 gattcantaaaattggaacaacaaaaattggaatgagtttcaccttggtgaaattccccc 1864
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24641527 gattcagtaaaattggaacaacaaaaattggaatgagtttcaccttggtgaaattccccc 24641468
Query: 1865 tattcaaatctaatacaagcaaaaac-aagtgttcactggtttgttaccagtaaaa 1919
|||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 24641467 tattcagatctaatacaagcaaaaacaaagtgttcactggtttgttacaagtaaaa 24641412
Score = 186 bits (94), Expect = 3e-44
Identities = 109/114 (95%)
Strand = Plus / Minus
Query: 952 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 1011
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 24722005 gaccctgctcagccccccgtccccatcgtgggcatcactgttggcctggttctggtcctg 24721946
Query: 1012 gttgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 1065
|| ||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 24721945 gtcgctggagccatggtggctggagctgtgatctggaggaagaagcgctcaggt 24721892
Score = 180 bits (91), Expect = 2e-42
Identities = 106/111 (95%)
Strand = Plus / Minus
Query: 955 cctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctggtt 1014
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 26675478 cctccacagccccccgtccccatcgtgggcatctttgttggcctggttctcgtcctggtc 26675419
Query: 1015 gctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 1065
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675418 gctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 26675368
Score = 178 bits (90), Expect = 7e-42
Identities = 108/114 (94%)
Strand = Plus / Minus
Query: 952 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 1011
|||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 24684937 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 24684878
Query: 1012 gttgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 1065
|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 24684877 gtcgctggagctgtggtggctggagttgtgatctggaggaagacgcgctcaggt 24684824
Score = 178 bits (90), Expect = 7e-42
Identities = 108/114 (94%)
Strand = Plus / Minus
Query: 952 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 1011
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 24705789 gaccctgctcagccccccgtccccatggtgggcatcactgttggcctggttcttgtcctg 24705730
Query: 1012 gttgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 1065
|| ||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24705729 gtcgctggagccatggtggctggagttgtgatctggaggaagaagtgctcaggt 24705676
Score = 155 bits (78), Expect = 1e-34
Identities = 153/178 (85%)
Strand = Plus / Plus
Query: 135 ccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccccgttt 194
||||||||||||| || || ||||||||||||||||||||| |||| || || |||| |
Sbjct: 24620297 ccactccctgagggatgtctacaccgccgtgtcccggcccggccgcagggagacccgctc 24620356
Query: 195 catctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccgaa 254
||| ||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 24620357 cattgccgtcggctacgtggacgacacgcaactcatgaggttcgacagcgacgccccgaa 24620416
Query: 255 tccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattgggat 312
|||| | |||||| |||| || ||||||| |||||| |||||| ||||||||||||
Sbjct: 24620417 tccgaaggtggagctgcggccgtcgtggatggagcagcaggggccagagtattgggat 24620474
Score = 143 bits (72), Expect = 4e-31
Identities = 222/272 (81%)
Strand = Plus / Plus
Query: 130 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 189
|||||||||||||||||||||||| |||| ||||||||||| || || || | |||
Sbjct: 27614449 ggtccccactccctgaggtatttctacacagccgtgtcccgaccgagtcgacgggatccc 27614508
Query: 190 cgtttcatctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 249
|| ||| | ||||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct: 27614509 cgcttctccgtcgtcggctatgtagacgacacgcagttcgtgcggttcgacagcaatgcc 27614568
Query: 250 ccgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattgg 309
||||||||| || |||||||||| | |||||| | |||| |||||| | |||||||||
Sbjct: 27614569 ccgaatccgagggaggagccgcggacaccgtgggtggagctggagggcccggagtattgc 27614628
Query: 310 gatgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaac 369
||| | | || || | | || || || | |||||| ||||| ||||| |||||| |
Sbjct: 27614629 gatcggaacacacgcatctacaaggacacctcacagaatttccaagtgagcctgaatgtc 27614688
Query: 370 ctgcgcggctactacaaccagagcgaggccgg 401
||||||||||||||||||||||||||||||||
Sbjct: 27614689 ctgcgcggctactacaaccagagcgaggccgg 27614720
Score = 143 bits (72), Expect = 4e-31
Identities = 108/120 (90%)
Strand = Plus / Plus
Query: 455 tcctccgcgggtacagtcaggacgcctacgacggcgccgattacatcgccctgaacgagg 514
|||||||||||||||||||| |||||| |||||||| |||||||||| |||||||||||
Sbjct: 27614948 tcctccgcgggtacagtcagttcgcctatgacggcgcggattacatcgtcctgaacgagg 27615007
Query: 515 acctgcgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagtgggagg 574
||||||||||||||||||||| || || ||||||||||||||| |||||| |||||||
Sbjct: 27615008 acctgcgctcctggaccgcggtgggcatggcggctcagatcactcggcgcaaatgggagg 27615067
Score = 141 bits (71), Expect = 2e-30
Identities = 104/115 (90%)
Strand = Plus / Minus
Query: 2 cggttctaaactctccatccattcgcctcgactccgcttctctccagactccgaggctga 61
||||||||||||||||| ||| || ||| ||| ||||||| |||||||||||||||||
Sbjct: 24687156 cggttctaaactctccacccacccggctctgctcagcttctccccagactccgaggctga 24687097
Query: 62 ggatcatggggccccgagccctcttcttgctgctgtcggggaccctggccctgac 116
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 24687096 ggatcatggggcctggagccctcttcctgctgctgtcggggaccctggccctgac 24687042
Score = 139 bits (70), Expect = 6e-30
Identities = 103/114 (90%)
Strand = Plus / Minus
Query: 952 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 1011
|||||| |||||||||| |||||||| |||| ||||| |||||||||||| || ||||||
Sbjct: 24656878 gaccctgctcagccccctgtccccattgtggacatcattgttggcctggtactggtcctg 24656819
Query: 1012 gttgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 1065
|| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24656818 gtctctggagccatggtgactggagttgtgatctggaggaagaagcgctcaggt 24656765
Score = 137 bits (69), Expect = 3e-29
Identities = 84/89 (94%)
Strand = Plus / Minus
Query: 28 ctcgactccgcttctctccagactccgaggctgaggatcatggggccccgagccctcttc 87
|||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 24659078 ctcgactcagcttctccccagactccgcggctgaggatcatggggccccgagccctcttc 24659019
Query: 88 ttgctgctgtcggggaccctggccctgac 116
|||||||||||||| |||||||||||||
Sbjct: 24659018 ctgctgctgtcgggggccctggccctgac 24658990
Score = 129 bits (65), Expect = 6e-27
Identities = 83/89 (93%)
Strand = Plus / Minus
Query: 28 ctcgactccgcttctctccagactccgaggctgaggatcatggggccccgagccctcttc 87
|||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 24724204 ctcgactccgcttctccccagactccgcggctgaggatcatggggccccgaggcctcttc 24724145
Query: 88 ttgctgctgtcggggaccctggccctgac 116
||||||| |||||| |||||||||||||
Sbjct: 24724144 ctgctgctctcgggggccctggccctgac 24724116
Score = 119 bits (60), Expect = 6e-24
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 37 gcttctctccagactccgaggctgaggatcatggggccccgagccctcttcttgctgctg 96
||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 24751635 gcttctccccagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctg 24751576
Query: 97 tcggggaccctggccctgac 116
||||||||||||||||||||
Sbjct: 24751575 tcggggaccctggccctgac 24751556
Score = 117 bits (59), Expect = 2e-23
Identities = 101/115 (87%)
Strand = Plus / Minus
Query: 2 cggttctaaactctccatccattcgcctcgactccgcttctctccagactccgaggctga 61
||||||||||||||||| ||| |||||||||||||||||||| |||||| |||||| |
Sbjct: 24708005 cggttctaaactctccaaccactcgcctcgactccgcttctccccagacaaagaggctaa 24707946
Query: 62 ggatcatggggccccgagccctcttcttgctgctgtcggggaccctggccctgac 116
||||||||||||| ||||||| || |||||||||| ||| |||||||||||||
Sbjct: 24707945 ggatcatggggcctggagcccttgtcctgctgctgtccggggccctggccctgac 24707891
Score = 107 bits (54), Expect = 2e-20
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 20392101 gagtttcaccttggtgaaattccccctattcagatctaatgcaagcaaaaacaaagtgtt 20392042
Query: 1898 cactggtttgttac 1911
|| |||||||||||
Sbjct: 20392041 cattggtttgttac 20392028
Score = 107 bits (54), Expect = 2e-20
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 1094 caggcagtgacagtgcccagggctctgatgtgtccctcaccaaggatcctagag 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24642398 caggcagtgacagtgcccagggctctgatgtgtccctcaccaaggatcctagag 24642345
Score = 105 bits (53), Expect = 9e-20
Identities = 89/101 (88%)
Strand = Plus / Plus
Query: 212 tggacgacacgcagttcgtgcggttcgacagcgacgccccgaatccgcggatggagccgc 271
||||||||||||||||||| |||||| |||||| ||| ||||||| || ||||||| |
Sbjct: 27603284 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 27603343
Query: 272 gggcgccgtggatagagcaggaggggcaggagtattgggat 312
||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 27603344 gggcgccgtggatggagcaggaggggcgggaatattgggat 27603384
Score = 103 bits (52), Expect = 4e-19
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 80559999 gagtttcaccttggtgaaattccccctattcagatctaatgtaagcaaaaactaagtgtt 80559940
Query: 1898 cactggtttgttaccagtaa 1917
|| ||||||||||| |||||
Sbjct: 80559939 cattggtttgttacaagtaa 80559920
Score = 95.6 bits (48), Expect = 9e-17
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||
Sbjct: 12278117 gagtttcaccttggtgaaattccccctattcagatctaacgtaagcaaaaacaaagtgtt 12278176
Query: 1898 cactggtttgttaccagtaa 1917
|| ||||||||||| |||||
Sbjct: 12278177 cattggtttgttacaagtaa 12278196
Score = 91.7 bits (46), Expect = 1e-15
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 1094 caggcagtgacagtgcccagggctctgatgtgtccctcaccaaggatcctagag 1147
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 24604434 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 24604487
Score = 83.8 bits (42), Expect = 3e-13
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 1094 caggcagtgacagtgcccagggctctgatgtgtccctcaccaaggatcctagag 1147
||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||
Sbjct: 24684231 caggcagtgacagtgaccagggctccgatgtgtcccttaccaaggatcctagag 24684178
Score = 81.8 bits (41), Expect = 1e-12
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 476 acgcctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcgg 535
||||||||||||||| ||||||||| | |||||||||||||| | |||||||| || |
Sbjct: 27209855 acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 27209796
Query: 536 cggacacggcggctcagatcaccaagcgcaagtggga 572
|||||| |||||||| | |||| |||||||||||||
Sbjct: 27209795 cggacatggcggctcgggtcacacagcgcaagtggga 27209759
Score = 81.8 bits (41), Expect = 1e-12
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 476 acgcctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcgg 535
||||||||||||||| ||||||||| | |||||||||||||| | |||||||| || |
Sbjct: 27629381 acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 27629322
Query: 536 cggacacggcggctcagatcaccaagcgcaagtggga 572
|||||| |||||||| | |||| |||||||||||||
Sbjct: 27629321 cggacatggcggctcgggtcacacagcgcaagtggga 27629285
Score = 79.8 bits (40), Expect = 5e-12
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 479 cctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcg 534
|||||||||||| ||||||||||| |||||| || |||||||||||||||||||||
Sbjct: 27603797 cctacgacggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 27603852
Score = 77.8 bits (39), Expect = 2e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1059 ctcaggtgaaaaaggagggagctacactcaggctgcagg 1097
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24604269 ctcaggtgaaaaaggagggagctacactcaggctgcagg 24604307
Score = 75.8 bits (38), Expect = 8e-11
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 1094 caggcagtgacagtgcccagggctctgatgtgtccctcaccaaggatcctagag 1147
||||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||
Sbjct: 24748733 caggcagtgacagtgaccagggctccgatgtgtcccttaccaagggtcctagag 24748680
Score = 75.8 bits (38), Expect = 8e-11
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 1094 caggcagtgacagtgcccagggctctgatgtgtccctcaccaaggatcctagag 1147
||||||| |||||||||||| |||||| ||||||||||| ||||||||||||||
Sbjct: 26674772 caggcagggacagtgcccagagctctggtgtgtccctcatcaaggatcctagag 26674719
Score = 73.8 bits (37), Expect = 3e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1061 caggtgaaaaaggagggagctacactcaggctgcagg 1097
|||||||||||||||||||||||||||||||||||||
Sbjct: 24642561 caggtgaaaaaggagggagctacactcaggctgcagg 24642525
Score = 73.8 bits (37), Expect = 3e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1061 caggtgaaaaaggagggagctacactcaggctgcagg 1097
|||||||||||||||||||||||||||||||||||||
Sbjct: 24684394 caggtgaaaaaggagggagctacactcaggctgcagg 24684358
Score = 73.8 bits (37), Expect = 3e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1061 caggtgaaaaaggagggagctacactcaggctgcagg 1097
|||||||||||||||||||||||||||||||||||||
Sbjct: 24748893 caggtgaaaaaggagggagctacactcaggctgcagg 24748857
Score = 65.9 bits (33), Expect = 8e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 1094 caggcagtgacagtgcccagggctctgatgtgt 1126
|||||||||||||||||||||||||||||||||
Sbjct: 24656172 caggcagtgacagtgcccagggctctgatgtgt 24656140
Score = 65.9 bits (33), Expect = 8e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 1094 caggcagtgacagtgcccagggctctgatgtgt 1126
|||||||||||||||||||||||||||||||||
Sbjct: 24705083 caggcagtgacagtgcccagggctctgatgtgt 24705051
Score = 65.9 bits (33), Expect = 8e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 1065 tgaaaaaggagggagctacactcaggctgcagg 1097
|||||||||||||||||||||||||||||||||
Sbjct: 26674930 tgaaaaaggagggagctacactcaggctgcagg 26674898
Score = 63.9 bits (32), Expect = 3e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 1094 caggcagtgacagtgcccagggctctgatgtg 1125
||||||||||||||||||||||||||||||||
Sbjct: 24721300 caggcagtgacagtgcccagggctctgatgtg 24721269
Score = 63.9 bits (32), Expect = 3e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 1061 caggtgaaaaaggagggagctacactcaggct 1092
||||||||||||||||||||||||||||||||
Sbjct: 24721463 caggtgaaaaaggagggagctacactcaggct 24721432
>gb|GL896105.1| Sus scrofa unplaced genomic scaffold chrU_scaffold479
Length = 309
Score = 573 bits (289), Expect = e-160
Identities = 304/309 (98%)
Strand = Plus / Plus
Query: 1325 tcaccctgacctgtgttctctttcctgatccactttccagctccaacaggttggggggag 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaccctgacctgtgttctctttcctgatccactttccagctccaacaggttggggggag 60
Query: 1385 gcaggcggcaatggaccatctccatccttatgctaagttcattgccctgactggtgactg 1444
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 61 gcaggcggcaatggaccatctccatccttatactaaattcattgccctgactggtgactg 120
Query: 1445 cggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttcca 1504
||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 121 cggggagccaaggagacacaggaggccaaggaagggaactagcctgatggcacagttcca 180
Query: 1505 aaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtagg 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtagg 240
Query: 1565 tttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaat 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaat 300
Query: 1625 aatgaggct 1633
|||||||||
Sbjct: 301 aatgaggct 309
>Sscrofa_Chr14
|| Length = 153851969
Score = 444 bits (224), Expect = e-122
Identities = 290/312 (92%)
Strand = Plus / Minus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 116915238 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 116915179
Query: 1503 caaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggta 1562
| |||||||||||||||||| ||| ||| ||||||||||||||| ||||||| |||| |
Sbjct: 116915178 cgaaggcagggttcctaaccgaggagaaaaagcctacccaccggcacagttccgagggca 116915119
Query: 1563 ggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaa 1622
|||||||||||||||||| || |||||| | ||||||||||| |||||||||| |||||
Sbjct: 116915118 ggtttagaaatagggaaaaggacttacctggcggcacagttccgagggcaagttctaaaa 116915059
Query: 1623 ataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttg 1682
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct: 116915058 ataatgaggctcacctgctaacccgacaacaacggcaacaataacaaaatgaaggctttg 116914999
Query: 1683 cacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttact 1742
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 116914998 cacaatagtgcaagaataaaaattgcttcttggaaaattcagtcttttctgttatttact 116914939
Query: 1743 tattactcagcc 1754
||||||||||||
Sbjct: 116914938 tattactcagcc 116914927
Score = 313 bits (158), Expect = 2e-82
Identities = 257/290 (88%)
Strand = Plus / Plus
Query: 1463 caggaggccaaggaagggaactagcctgacggcacagttccaaaggcagggttcctaacc 1522
||||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 52241982 caggaggccgaggaagagaattagcttgacggcacagttccaaaggcagggttcctaacc 52242041
Query: 1523 aagggaaaagagcctacccaccggcgcagttccaagggtaggtttagaaatagggaaagg 1582
||| |||| |||||||| ||||| ||||||| |||| ||||||||||||||||||| |
Sbjct: 52242042 gaggaaaaaaagcctacctgccggcacagttccgagggcaggtttagaaatagggaaaag 52242101
Query: 1583 ggcttacccagtggcacagttccaagggcaagttataaaaataatgaggctcacctgcta 1642
|||||||| | ||||||||||| |||||||||| | |||| ||||||||||||| ||||
Sbjct: 52242102 ggcttaccaggcggcacagttccgagggcaagttctgaaaacaatgaggctcacccgcta 52242161
Query: 1643 acccgactacaacggcaacaataacaaaacgaaggttttgcacaatagtgcaagaataaa 1702
||||||| |||| ||||||||| |||||| ||||| ||||||||| ||||||||||||||
Sbjct: 52242162 acccgacaacaatggcaacaatgacaaaatgaaggctttgcacaacagtgcaagaataaa 52242221
Query: 1703 aattgcttcttggaaaattcagtctttcctgttgtttacttattactcag 1752
||| ||||||||| ||| |||||||||||||| |||||||||| |||||
Sbjct: 52242222 aatcgcttcttgggaaaaccagtctttcctgttatttacttattcctcag 52242271
Score = 305 bits (154), Expect = 5e-80
Identities = 256/290 (88%)
Strand = Plus / Minus
Query: 1463 caggaggccaaggaagggaactagcctgacggcacagttccaaaggcagggttcctaacc 1522
||||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 52060637 caggaggccgaggaagagaattagcttgacggcacagttccaaaggcagggttcctaacc 52060578
Query: 1523 aagggaaaagagcctacccaccggcgcagttccaagggtaggtttagaaatagggaaagg 1582
||| |||| |||||||| ||||| ||||||| |||| ||||||||||||||||||| |
Sbjct: 52060577 gaggaaaaaaagcctacctgccggcacagttccgagggcaggtttagaaatagggaaaag 52060518
Query: 1583 ggcttacccagtggcacagttccaagggcaagttataaaaataatgaggctcacctgcta 1642
|||||||| | ||||||||||| |||||||||| | |||| ||||||||||||| ||||
Sbjct: 52060517 ggcttaccaggcggcacagttccgagggcaagttctgaaaacaatgaggctcacccgcta 52060458
Query: 1643 acccgactacaacggcaacaataacaaaacgaaggttttgcacaatagtgcaagaataaa 1702
||||||| |||| ||||||||| |||||| ||||| ||||||||| |||| |||||||||
Sbjct: 52060457 acccgacaacaatggcaacaatgacaaaatgaaggctttgcacaacagtgtaagaataaa 52060398
Query: 1703 aattgcttcttggaaaattcagtctttcctgttgtttacttattactcag 1752
||| ||||||||| ||| |||||||||||||| |||||||||| |||||
Sbjct: 52060397 aatcgcttcttgggaaaaccagtctttcctgttatttacttattcctcag 52060348
Score = 283 bits (143), Expect = 2e-73
Identities = 267/308 (86%), Gaps = 4/308 (1%)
Strand = Plus / Plus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
||||||||||| |||| | ||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 127802474 tgcggggagccaaggagatgcaggaggcctaggaagggaactagccggacagcacagttc 127802533
Query: 1503 caaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggta 1562
|||||||||||||||||||||| |||| |||||||| | ||| ||||||| |||| |
Sbjct: 127802534 tgaaggcagggttcctaaccaaggaaaaaaagcctacctgctggcacagttccgagggca 127802593
Query: 1563 ggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaa 1622
|||||||||||||||||| |||||||||| | |||||||||| |||||||| | |||||
Sbjct: 127802594 ggtttagaaatagggaaaagggcttaccctgcggcacagttctgagggcaagctctaaaa 127802653
Query: 1623 ataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttg 1682
||||||||||||||||||||||||||| |||| ||| |||||||||||| ||||| ||||
Sbjct: 127802654 ataatgaggctcacctgctaacccgacaacaatggctacaataacaaaatgaaggctttg 127802713
Query: 1683 cacaatag----tgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtt 1738
||||| || ||||||||||||||| ||||||||||| |||||||||| |||| ||
Sbjct: 127802714 cacaacagtgcatgcaagaataaaaatcatttcttggaaaaatcagtctttcttgttatt 127802773
Query: 1739 tacttatt 1746
|| |||||
Sbjct: 127802774 taattatt 127802781
Score = 276 bits (139), Expect = 4e-71
Identities = 267/307 (86%), Gaps = 2/307 (0%)
Strand = Plus / Minus
Query: 1441 actgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagt 1500
|||||||||||||||||| | ||||||||| |||||||||||||||||||| |||| ||
Sbjct: 153664489 actgcggggagccgaggacatgcaggaggccgaggaagggaactagcctgacagcacggt 153664430
Query: 1501 tccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaaggg 1560
|||||||||||||||||| ||| ||| | || ||||||||| | ||| ||||||| ||||
Sbjct: 153664429 tccaaaggcagggttcctcaccgaggaacaa-agcctacccgctggcacagttccgaggg 153664371
Query: 1561 taggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataa 1620
|||||||||||||||| || ||||||||| | |||||||||| |||||||||| |||
Sbjct: 153664370 caggtttagaaataggggaaagggcttacctggcagcacagttccgagggcaagttctaa 153664311
Query: 1621 aaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttt 1680
||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||| ||
Sbjct: 153664310 aaataatgaggctcacctgctaacccgacaacaacatcaacaataacaagatgaaggctt 153664251
Query: 1681 tgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgttta 1740
||||||| ||| ||||||||||| ||||| |||||| |||||||||| |||| ||||
Sbjct: 153664250 tgcacaacagtacaagaataaaacca-cttctgggaaaaatcagtctttcttgttattta 153664192
Query: 1741 cttatta 1747
|||||||
Sbjct: 153664191 cttatta 153664185
Score = 276 bits (139), Expect = 4e-71
Identities = 267/307 (86%), Gaps = 2/307 (0%)
Strand = Plus / Plus
Query: 1441 actgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagt 1500
|||||||||||||||||| | ||||||||| |||||||||||||||||||| |||| ||
Sbjct: 153808065 actgcggggagccgaggacatgcaggaggccgaggaagggaactagcctgacagcacggt 153808124
Query: 1501 tccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaaggg 1560
|||||||||||||||||| ||| ||| | || ||||||||| | ||| ||||||| ||||
Sbjct: 153808125 tccaaaggcagggttcctcaccgaggaacaa-agcctacccgctggcacagttccgaggg 153808183
Query: 1561 taggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataa 1620
|||||||||||||||| || ||||||||| | |||||||||| |||||||||| |||
Sbjct: 153808184 caggtttagaaataggggaaagggcttacctggcagcacagttccgagggcaagttctaa 153808243
Query: 1621 aaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttt 1680
||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||| ||
Sbjct: 153808244 aaataatgaggctcacctgctaacccgacaacaacatcaacaataacaagatgaaggctt 153808303
Query: 1681 tgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgttta 1740
||||||| ||| ||||||||||| ||||| |||||| |||||||||| |||| ||||
Sbjct: 153808304 tgcacaacagtacaagaataaaacca-cttctgggaaaaatcagtctttcttgttattta 153808362
Query: 1741 cttatta 1747
|||||||
Sbjct: 153808363 cttatta 153808369
Score = 238 bits (120), Expect = 9e-60
Identities = 248/290 (85%), Gaps = 3/290 (1%)
Strand = Plus / Minus
Query: 1463 caggaggccaaggaagggaactagcctgacggcacagttccaaaggcagggttcctaacc 1522
||||||||| || |||||||||||||||| ||| ||||||| ||||||||||| ||||||
Sbjct: 52073845 caggaggccgagaaagggaactagcctgatggcgcagttccgaaggcagggttactaacc 52073786
Query: 1523 aagggaaaagagcctacccaccggcgcagttccaagggtaggtttagaaatagggaaagg 1582
|||| ||| ||||||||| | ||| | |||| |||| ||||||||||||||| ||| |
Sbjct: 52073785 aaggaaaagaagcctacccgctggcacggttctgagggcaggtttagaaataggaaaaag 52073726
Query: 1583 ggcttacccagtggcacagttccaagggcaagttataaaaataatgaggctcacctgcta 1642
|||||||| | |||||||| | |||||||||| |||||| ||||||||||||||||||
Sbjct: 52073725 ggcttacctggcagcacagttacgagggcaagttctaaaaacaatgaggctcacctgcta 52073666
Query: 1643 acccgactacaacggcaacaataacaaaacgaaggttttgcacaatagtgcaagaataaa 1702
||| ||| | || |||||| ||||||| ||||| ||||||||| |||||||||||| |
Sbjct: 52073665 acctgacaataa---caacaaaaacaaaatgaaggctttgcacaacagtgcaagaataga 52073609
Query: 1703 aattgcttcttggaaaattcagtctttcctgttgtttacttattactcag 1752
||| ||||||| ||||||||||||||||||| | ||||||||||| ||||
Sbjct: 52073608 aatcgcttcttagaaaattcagtctttcctgctatttacttattattcag 52073559
Score = 238 bits (120), Expect = 9e-60
Identities = 248/290 (85%), Gaps = 3/290 (1%)
Strand = Plus / Plus
Query: 1463 caggaggccaaggaagggaactagcctgacggcacagttccaaaggcagggttcctaacc 1522
||||||||| || |||||||||||||||| ||| ||||||| ||||||||||| ||||||
Sbjct: 52187527 caggaggccgagaaagggaactagcctgatggcgcagttccgaaggcagggttactaacc 52187586
Query: 1523 aagggaaaagagcctacccaccggcgcagttccaagggtaggtttagaaatagggaaagg 1582
|||| ||| ||||||||| | ||| | |||| |||| ||||||||||||||| ||| |
Sbjct: 52187587 aaggaaaagaagcctacccgctggcacggttctgagggcaggtttagaaataggaaaaag 52187646
Query: 1583 ggcttacccagtggcacagttccaagggcaagttataaaaataatgaggctcacctgcta 1642
|||||||| | |||||||| | |||||||||| |||||| ||||||||||||||||||
Sbjct: 52187647 ggcttacctggcagcacagttacgagggcaagttctaaaaacaatgaggctcacctgcta 52187706
Query: 1643 acccgactacaacggcaacaataacaaaacgaaggttttgcacaatagtgcaagaataaa 1702
||| ||| | || |||||| ||||||| ||||| ||||||||| |||||||||||| |
Sbjct: 52187707 acctgacaataa---caacaaaaacaaaatgaaggctttgcacaacagtgcaagaataga 52187763
Query: 1703 aattgcttcttggaaaattcagtctttcctgttgtttacttattactcag 1752
||| ||||||| ||||||||||||||||||| | ||||||||||| ||||
Sbjct: 52187764 aatcgcttcttagaaaattcagtctttcctgctatttacttattattcag 52187813
Score = 103 bits (52), Expect = 4e-19
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 116914826 gagtttcaccttggtgaaattccccctattcagatctaatgtaagcaaaaacaaagtgtt 116914767
Query: 1898 cactggtttgttaccagtaa 1917
|| ||||||||||| |||||
Sbjct: 116914766 cattggtttgttacgagtaa 116914747
Score = 95.6 bits (48), Expect = 9e-17
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||| ||||||| ||||||| |||||||||| |||||||
Sbjct: 127802875 gagtttcaccttggtgaaattccctctattcagatctaatgtaagcaaaaacaaagtgtt 127802934
Query: 1898 cactggtttgttaccagtaa 1917
|| ||||||||||| |||||
Sbjct: 127802935 cattggtttgttacaagtaa 127802954
Score = 67.9 bits (34), Expect = 2e-08
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 1841 gtttcaccttggtgaaattccccctattcaaatctaat 1878
|||||||||||||| |||||||||||||||||||||||
Sbjct: 52073456 gtttcaccttggtggaattccccctattcaaatctaat 52073419
Score = 67.9 bits (34), Expect = 2e-08
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1841 gtttcaccttggtgaaattccccctattcaaatctaat 1878
|||||||||||||| |||||||||||||||||||||||
Sbjct: 52187916 gtttcaccttggtggaattccccctattcaaatctaat 52187953
>Sscrofa_Chr13
|| Length = 218635234
Score = 438 bits (221), Expect = e-120
Identities = 291/313 (92%), Gaps = 1/313 (0%)
Strand = Plus / Minus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 185153321 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 185153262
Query: 1503 caaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggta 1562
| |||||||||||||||||| ||| |||| ||||||||||| ||| ||||||| |||| |
Sbjct: 185153261 cgaaggcagggttcctaaccgaggaaaaaaagcctacccactggcacagttccgagggca 185153202
Query: 1563 ggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaa 1622
||||||||||||||||| | ||||||||||||||||||||| |||||||||| |||||
Sbjct: 185153201 agtttagaaatagggaaaaagacttacccagtggcacagttccgagggcaagttctaaaa 185153142
Query: 1623 ataatgaggctcacctgctaacccgactacaacggcaacaataac-aaaacgaaggtttt 1681
||||||||||||||||||||||| ||| |||||||| |||||||| |||| |||||||||
Sbjct: 185153141 ataatgaggctcacctgctaacctgacaacaacggctacaataacaaaaatgaaggtttt 185153082
Query: 1682 gcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttac 1741
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 185153081 gcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttatttac 185153022
Query: 1742 ttattactcagcc 1754
|||||||||||||
Sbjct: 185153021 ttattactcagcc 185153009
Score = 353 bits (178), Expect = 2e-94
Identities = 266/294 (90%), Gaps = 1/294 (0%)
Strand = Plus / Plus
Query: 1462 acaggaggccaaggaagggaactagcctgacggcacagttccaaaggcagggttcctaac 1521
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 118134497 acaggaggccaaggaagggaactagcctgatggcacagttctgaaggcagggttcctaac 118134556
Query: 1522 caagggaaaagagcctacccaccggcgcagttccaagggtaggtttagaaatagggaaag 1581
||| |||| ||||||||| ||||| |||||| |||| ||||||| ||||||||||||
Sbjct: 118134557 tgaggaaaaaaagcctacccgccggcatagttccgagggcaggtttaaaaatagggaaag 118134616
Query: 1582 ggg-cttacccagtggcacagttccaagggcaagttataaaaataatgaggctcacctgc 1640
||| |||||| | ||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 118134617 ggggcttacctggcggcacagttccgagggcaagttctaaaaataatgaggctcacctgc 118134676
Query: 1641 taacccgactacaacggcaacaataacaaaacgaaggttttgcacaatagtgcaagaata 1700
||||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 118134677 taacctgacaacaacggcaacaataacaaaatgaaggctttgcacaatagtgcaagaata 118134736
Query: 1701 aaaattgcttcttggaaaattcagtctttcctgttgtttacttattactcagcc 1754
|||||| |||||||||||||||| ||||||||||| ||||||| ||| ||||||
Sbjct: 118134737 aaaattacttcttggaaaattcactctttcctgttatttacttgttattcagcc 118134790
Score = 341 bits (172), Expect = 9e-91
Identities = 256/284 (90%)
Strand = Plus / Plus
Query: 1452 ccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaaaggcag 1511
||||||| | ||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 55298994 ccgaggagatacaggaggccaaggaagggaaacagcctgacggcacagttccgaaggcag 55299053
Query: 1512 ggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtaggtttagaa 1571
||||||||||||||| |||| |||||||| |||||| ||||||||||| |||||||||
Sbjct: 55299054 ggttcctaaccaaggaaaaaaagcctacctaccggcacagttccaaggacaggtttagat 55299113
Query: 1572 atagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaataatgagg 1631
||||||||| || ||||||||| |||||||||| |||||||||| ||||||||||||||
Sbjct: 55299114 atagggaaaaggacttacccagaagcacagttccgagggcaagttctaaaaataatgagg 55299173
Query: 1632 ctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttgcacaatagt 1691
|||||||||||| ||||| ||| | |||||| |||||||| ||||| ||||||||| |||
Sbjct: 55299174 ctcacctgctaatccgacaacagcagcaacagtaacaaaatgaaggctttgcacaacagt 55299233
Query: 1692 gcaagaataaaaattgcttcttggaaaattcagtctttcctgtt 1735
||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 55299234 gcaagaataaaaattgccttttggaaaattcagtctttcctgtt 55299277
Score = 337 bits (170), Expect = 1e-89
Identities = 275/310 (88%)
Strand = Plus / Plus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
|||||||||||||||| | ||||||||| |||| |||||||||||||| ||||||||||
Sbjct: 61831738 tgcggggagccgaggagatgcaggaggccgaggaggggaactagcctgatggcacagttc 61831797
Query: 1503 caaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggta 1562
|||||||||||||||||| ||| || | | ||||||| ||| ||||||| |||| |
Sbjct: 61831798 tgaaggcagggttcctaaccgaggaaacaaaacctacccggtggcacagttcccagggca 61831857
Query: 1563 ggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaa 1622
|||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |||||
Sbjct: 61831858 ggtttagaaatagggaaaagggcttacccggtggcacagttccgagggcaagttctaaaa 61831917
Query: 1623 ataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttg 1682
| ||||||||||||||||||||| ||| |||| || |||||||| |||| ||||| ||||
Sbjct: 61831918 acaatgaggctcacctgctaacctgacaacaatggtaacaataaaaaaatgaaggctttg 61831977
Query: 1683 cacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttact 1742
|||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 61831978 cacaatagcgcaagaataaaaatcgcttcttggaaaaatcagtctttcctgttgtttact 61832037
Query: 1743 tattactcag 1752
||||| ||||
Sbjct: 61832038 tattattcag 61832047
Score = 331 bits (167), Expect = 8e-88
Identities = 270/303 (89%), Gaps = 1/303 (0%)
Strand = Plus / Minus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
||||||||||| |||| | ||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 171962096 tgcggggagccaaggagatacaggagaccaaggaagggaactagcctgatggcacagttc 171962037
Query: 1503 caaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggta 1562
| |||||||||||||||||| ||| |||| ||| ||||||||||| |||||| |||| |
Sbjct: 171962036 cgaaggcagggttcctaacctaggaaaaaaagcatacccaccggcacagttctgagggca 171961977
Query: 1563 ggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaa 1622
|||||||||||||||||| || ||||||| |||||||||||| |||||||| | |||||
Sbjct: 171961976 ggtttagaaatagggaaaaggacttacccggtggcacagttctgagggcaag-tctaaaa 171961918
Query: 1623 ataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttg 1682
| || ||||||||||||||| || ||| ||| |||||||||||||||| ||||| ||||
Sbjct: 171961917 acaaggaggctcacctgctatcctgacaacagtggcaacaataacaaaatgaaggctttg 171961858
Query: 1683 cacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttact 1742
|||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct: 171961857 cacaatagtgcaagaataaaaattgctttttggaaaattcagtctttcctgttatgtact 171961798
Query: 1743 tat 1745
|||
Sbjct: 171961797 tat 171961795
Score = 305 bits (154), Expect = 5e-80
Identities = 267/302 (88%), Gaps = 2/302 (0%)
Strand = Plus / Minus
Query: 1446 ggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaa 1505
||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 710766 ggggagccgaggagatgcagggggccaaggaagggaactagcctgacggaacagttccaa 710707
Query: 1506 aggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtaggt 1565
||||||||||||||||| ||| |||| |||||||||| ||| ||||||||||| ||||
Sbjct: 710706 aggcagggttcctaaccgaggaaaaaaagcctacccagtggcacagttccaaggacaggt 710647
Query: 1566 ttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaata 1625
||||||||||||||| ||||||||| | |||| |||||| ||||| |||| ||||||||
Sbjct: 710646 ttagaaatagggaaaagggcttacctggcggcatagttccgagggc-agttctaaaaata 710588
Query: 1626 atgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttgcac 1685
|||||| |||||||||||||||| |||| |||||||||||||||| ||||| |||||||
Sbjct: 710587 atgagggtcacctgctaacccgataacaatggcaacaataacaaaatgaaggctttgcac 710528
Query: 1686 aatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttacttat 1745
|||||||||||||| ||||| ||| |||||||| |||||||||| || | |||||||||
Sbjct: 710527 aatagtgcaagaat-aaaatcgctctttggaaaaatcagtctttcttgctatttacttat 710469
Query: 1746 ta 1747
||
Sbjct: 710468 ta 710467
Score = 293 bits (148), Expect = 2e-76
Identities = 263/300 (87%), Gaps = 1/300 (0%)
Strand = Plus / Minus
Query: 1446 ggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaa 1505
|||||||| |||| | ||||||| ||||||||||||| |||||||| ||||||||||| |
Sbjct: 172394277 ggggagccaaggagatacaggagaccaaggaagggaattagcctgatggcacagttccga 172394218
Query: 1506 aggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtaggt 1565
||||||||||||||||| ||| |||| |||||||| || || ||||||| | | ||||
Sbjct: 172394217 aggcagggttcctaacctaggaaaaaaagcctacctgccagcacagttccgaagacaggt 172394158
Query: 1566 ttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaata 1625
||||||||||||||| || ||||||| |||||||||||| ||||||||| |||||| |
Sbjct: 172394157 ttagaaatagggaaaaggacttacccggtggcacagttctgagggcaagtc-taaaaaca 172394099
Query: 1626 atgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttgcac 1685
| ||||||||||||||| || ||| ||| |||||||||||||||| ||||| |||||||
Sbjct: 172394098 aggaggctcacctgctatcctgacaacagtggcaacaataacaaaatgaaggctttgcac 172394039
Query: 1686 aatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttacttat 1745
||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct: 172394038 aatagtgcaagaataaaaattgctttttggaaaattcagtctttcctgttatgtacttat 172393979
Score = 268 bits (135), Expect = 1e-68
Identities = 216/241 (89%), Gaps = 4/241 (1%)
Strand = Plus / Plus
Query: 1514 ttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtaggtttagaaat 1573
||||||||| ||| |||| ||||||||| ||||| ||||||| |||| ||||||||||||
Sbjct: 189081380 ttcctaaccgaggaaaaaaagcctacccgccggcacagttccgagggcaggtttagaaat 189081439
Query: 1574 agggaaaggggcttacccagtggcacagttccaagggcaagttataaaaataatgaggct 1633
|||| || |||||||||| |||||||||||| |||||||||| ||||||||||||||||
Sbjct: 189081440 agggcaaagggcttacccggtggcacagttctgagggcaagttctaaaaataatgaggct 189081499
Query: 1634 cacctgctaacccgactacaacggcaacaataacaaaacgaaggttttgcacaatagtgc 1693
|||||||||||||||| |||||| ||||||| |||| ||||| |||| ||||||||||
Sbjct: 189081500 cacctgctaacccgacaacaacg---acaataataaaatgaaggctttgtacaatagtgc 189081556
Query: 1694 aagaataaaaattgcttcttggaaaattcagtctttcctgttgtttacttattactcagc 1753
||||||||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||
Sbjct: 189081557 aagaataaaaaatgcttcttggagaattcagtcttt-ctgttatttacttattactcagc 189081615
Query: 1754 c 1754
|
Sbjct: 189081616 c 189081616
Score = 240 bits (121), Expect = 2e-60
Identities = 160/173 (92%)
Strand = Plus / Minus
Query: 1580 aggggcttacccagtggcacagttccaagggcaagttataaaaataatgaggctcacctg 1639
|||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||
Sbjct: 137802636 aggggcttacccggtggcacagttctgagggcaagttctaaaattaatgaggctcacctg 137802577
Query: 1640 ctaacccgactacaacggcaacaataacaaaacgaaggttttgcacaatagtgcaagaat 1699
|||||| ||| ||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 137802576 ctaacctgacaacaacggcaacaatagcaaaatgaaggttttgcacaataatgcaagaat 137802517
Query: 1700 aaaaattgcttcttggaaaattcagtctttcctgttgtttacttattactcag 1752
|||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 137802516 aaaaattgcttcttggaatattcagtctttcctgttatttacttattattcag 137802464
Score = 220 bits (111), Expect = 2e-54
Identities = 169/187 (90%), Gaps = 1/187 (0%)
Strand = Plus / Plus
Query: 1562 aggtttagaaatagggaaag-gggcttacccagtggcacagttccaagggcaagttataa 1620
||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||| |||
Sbjct: 162985258 aggtttagaaacagggaaaaagggcttacctggtggcacagttccgagggcaagttctaa 162985317
Query: 1621 aaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttt 1680
|| |||||||||||||||||||||||||| |||| |||||||||||||||| |||| ||
Sbjct: 162985318 aactaatgaggctcacctgctaacccgacaacaatggcaacaataacaaaatgaagcctt 162985377
Query: 1681 tgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgttta 1740
||||||| |||||||||||| |||| ||||||||||||| ||||||||||||||| ||||
Sbjct: 162985378 tgcacaacagtgcaagaatagaaatcgcttcttggaaaaatcagtctttcctgttattta 162985437
Query: 1741 cttatta 1747
|||||||
Sbjct: 162985438 cttatta 162985444
Score = 198 bits (100), Expect = 8e-48
Identities = 256/311 (82%), Gaps = 14/311 (4%)
Strand = Plus / Minus
Query: 1442 ctgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagtt 1501
||||||||||| ||||| | |||||||||||||||||||||||| ||| |||||| ||
Sbjct: 161489696 ctgcggggagctgaggagatgcaggaggccaaggaagggaactagtctgttggcacaatt 161489637
Query: 1502 ccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggt 1561
|||||||||||||||||||| ||| |||| |||||||| ||||
Sbjct: 161489636 tcaaaggcagggttcctaaccgaggaaaaaaagcctacctg--------------agggc 161489591
Query: 1562 aggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaa 1621
||||||||||| ||||| | |||||||| | |||||||| |||||||||| ||||
Sbjct: 161489590 aggtttagaaacagggagaagggcttacatggccacacagttctgagggcaagttctaaa 161489531
Query: 1622 aataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggtttt 1681
|| |||||||||||||||||||||| || |||| |||||||| ||||||| ||| | |||
Sbjct: 161489530 aacaatgaggctcacctgctaacccaacaacaatggcaacaaaaacaaaatgaatgcttt 161489471
Query: 1682 gcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttac 1741
| |||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |||||
Sbjct: 161489470 gtacaacagtgcaagaataaaaatcgcttcttggaaaaatcagtctttcctgttatttac 161489411
Query: 1742 ttattactcag 1752
|||||| ||||
Sbjct: 161489410 ttattattcag 161489400
Score = 143 bits (72), Expect = 4e-31
Identities = 121/136 (88%), Gaps = 1/136 (0%)
Strand = Plus / Minus
Query: 1446 ggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaa 1505
||||||||||||| | | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 137803042 ggggagccgaggagataaaggaggccaaggaagggaactagcctgacagcacagttccaa 137802983
Query: 1506 aggcagggttcctaaccaagg-gaaaagagcctacccaccggcgcagttccaagggtagg 1564
||||||||||||||||||||| |||| ||||||||| |||| ||||||| | | |||
Sbjct: 137802982 aggcagggttcctaaccaaggaaaaaaaagcctacccgccggtacagttccgaagccagg 137802923
Query: 1565 tttagaaatagggaaa 1580
|||| |||||||||||
Sbjct: 137802922 tttaaaaatagggaaa 137802907
Score = 133 bits (67), Expect = 4e-28
Identities = 116/131 (88%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 1617 ataaaaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaag 1676
||||||| ||||| ||||||| ||||| ||||| ||||| ||||||||||||||| ||||
Sbjct: 53897141 ataaaaacaatgaagctcacccgctaagccgacaacaacagcaacaataacaaaatgaag 53897200
Query: 1677 gttttgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttg 1736
| ||||||||| ||||||||||| ||||| |||||||||||| |||||||||| ||||
Sbjct: 53897201 gctttgcacaacagtgcaagaat-aaaatcacttcttggaaaaatcagtctttcttgtta 53897259
Query: 1737 tttacttatta 1747
|||||||||||
Sbjct: 53897260 tttacttatta 53897270
Score = 115 bits (58), Expect = 9e-23
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct: 185152921 gagtttcaccttggtgaaattcctcctattcagatctaatacaagcaaaaacaaagtgtt 185152862
Query: 1898 cactggtttgttaccagtaaaa 1919
|| ||||||||||| |||||||
Sbjct: 185152861 cattggtttgttacaagtaaaa 185152840
Score = 111 bits (56), Expect = 1e-21
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 1446 ggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaa 1505
||||||| ||||| | ||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 53896552 ggggagctgaggagatgcaggaggccgaggaagggaactagcctgactgcacagttccaa 53896611
Query: 1506 aggcagggttcctaaccaagggaaaagagcctaccc 1541
|||||||||||||||| ||| |||| |||||||||
Sbjct: 53896612 aggcagggttcctaacataggaaaaaaagcctaccc 53896647
Score = 105 bits (53), Expect = 9e-20
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1836 aatgagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagt 1894
|||||||||||||||||||||||||| |||||||| ||||||| |||||||||| ||||
Sbjct: 118134886 aatgagtttcaccttggtgaaattcctcctattcagatctaatgtaagcaaaaacaaagt 118134945
Query: 1895 gttcactggtttgttaccagtaaaa 1919
||||| ||||||||||| |||||||
Sbjct: 118134946 gttcattggtttgttacaagtaaaa 118134970
Score = 103 bits (52), Expect = 4e-19
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
||||||||||||||||||||||||||| |||| ||||||| ||||||||||| |||||||
Sbjct: 189081714 gagtttcaccttggtgaaattcccccttttcagatctaatgcaagcaaaaacaaagtgtt 189081773
Query: 1898 cactggtttgttaccagtaa 1917
|| ||||||||||| |||||
Sbjct: 189081774 cattggtttgttacaagtaa 189081793
Score = 99.6 bits (50), Expect = 6e-18
Identities = 72/78 (92%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 1841 gtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgttca 1899
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||
Sbjct: 171961683 gtttcaccttggtgaaattccccctattcagatctaatggaagcaaaaacaaagtgttca 171961624
Query: 1900 ctggtttgttaccagtaa 1917
||| |||||||| |||||
Sbjct: 171961623 ctgttttgttacaagtaa 171961606
Score = 95.6 bits (48), Expect = 9e-17
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 172393869 gagtttcaccttggtgaaattccccctattcagatctaatggaagcaaaaacaaagtgtt 172393810
Query: 1898 cactggtttgttaccagtaa 1917
||| | |||||||| |||||
Sbjct: 172393809 cacagttttgttacaagtaa 172393790
Score = 83.8 bits (42), Expect = 3e-13
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||| |||||||||||| |||||| ||||||| |||||||||| |||||||
Sbjct: 55299371 gagtttcaccttagtgaaattccccttattcagatctaatgtaagcaaaaacaaagtgtt 55299430
Query: 1898 cactggtttgttac 1911
|| |||||||||||
Sbjct: 55299431 cattggtttgttac 55299444
Score = 65.9 bits (33), Expect = 8e-08
Identities = 71/81 (87%), Gaps = 2/81 (2%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaa-gcaaaaac-aagtgt 1896
||||||| || ||||||||| ||||||||||| ||||||| || |||||||| ||||||
Sbjct: 137802362 gagtttcgccctggtgaaatcccccctattcagatctaatgtaatgcaaaaacaaagtgt 137802303
Query: 1897 tcactggtttgttaccagtaa 1917
||| ||||||||||| |||||
Sbjct: 137802302 tcattggtttgttacaagtaa 137802282
>Sscrofa_Chr04
|| Length = 143465943
Score = 438 bits (221), Expect = e-120
Identities = 287/309 (92%)
Strand = Plus / Minus
Query: 1446 ggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaa 1505
||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88901442 ggggagcagaggagatacaggaggccaaggaagggaactagcctgacggcacagttccaa 88901383
Query: 1506 aggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtaggt 1565
|||||||||||||| |||||| ||| ||||||||| ||||| ||||||| |||| ||||
Sbjct: 88901382 aggcagggttcctagccaaggagaaaaagcctacccgccggcacagttccgagggcaggt 88901323
Query: 1566 ttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaata 1625
||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 88901322 ttagaaatagggaaaagggcttacccagcggcacagttccaagggcaagttcgaaaaata 88901263
Query: 1626 atgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttgcac 1685
||||||||||||||||| |||||| |||||| ||||||||| |||| ||||| |||||||
Sbjct: 88901262 atgaggctcacctgctatcccgacaacaacgacaacaataataaaatgaaggctttgcac 88901203
Query: 1686 aatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttacttat 1745
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 88901202 aatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttatttacttat 88901143
Query: 1746 tactcagcc 1754
|||||||||
Sbjct: 88901142 tactcagcc 88901134
Score = 375 bits (189), Expect = e-101
Identities = 279/308 (90%), Gaps = 2/308 (0%)
Strand = Plus / Plus
Query: 1442 ctgcggggagccgaggaaacacaggagg--ccaaggaagggaactagcctgacggcacag 1499
||||||||||||||||| | |||||||| |||| ||||||||||||||||| |||||||
Sbjct: 105103159 ctgcggggagccgaggagatacaggaggagccaacgaagggaactagcctgatggcacag 105103218
Query: 1500 ttccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagg 1559
|| | ||||||||||||||||| |||||||| ||||||||| ||| ||||||| |||
Sbjct: 105103219 ttgcgaaggcagggttcctaactgagggaaaaaagcctacccgtaggcacagttccgagg 105103278
Query: 1560 gtaggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttata 1619
| ||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
Sbjct: 105103279 gcaggtttagaaatagggaaaaggacttacccggtggcacagttccaagggcaagttcca 105103338
Query: 1620 aaaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggtt 1679
|||||||||||||||||||||||| ||||| |||| |||||||||||||||| || || |
Sbjct: 105103339 aaaataatgaggctcacctgctaagccgacaacaatggcaacaataacaaaatgatggct 105103398
Query: 1680 ttgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgttt 1739
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 105103399 ttgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttattt 105103458
Query: 1740 acttatta 1747
||||||||
Sbjct: 105103459 acttatta 105103466
Score = 375 bits (189), Expect = e-101
Identities = 278/306 (90%), Gaps = 5/306 (1%)
Strand = Plus / Plus
Query: 1447 gggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaaa 1506
|||||||||||| | |||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 123794544 gggagccgaggagatacaggaggccaaggaagggaactagcctgacggcactgttcctaa 123794603
Query: 1507 ggcagggttcctaaccaagggaaaaga--gcctacccaccggcgcagttccaagggtagg 1564
|||||| ||||||||||| | |||| | | |||||| | ||| |||||||||||| | |
Sbjct: 123794604 ggcaggtttcctaaccaaagaaaaaaaaagtctacccgctggcacagttccaagggcaag 123794663
Query: 1565 tttagaaatagggaaaggggcttacccagtggc---acagttccaagggcaagttataaa 1621
|||||||||||||||| |||||||||||||||| ||||||| |||||||||| ||||
Sbjct: 123794664 tttagaaatagggaaaagggcttacccagtggcggcacagttctgagggcaagttctaaa 123794723
Query: 1622 aataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggtttt 1681
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct: 123794724 aataatgaggctcacctgctaacccgacaacaacggcaacaataacaaaatgaaggcttt 123794783
Query: 1682 gcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttac 1741
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 123794784 gtacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttatttac 123794843
Query: 1742 ttatta 1747
||||||
Sbjct: 123794844 ttatta 123794849
Score = 315 bits (159), Expect = 5e-83
Identities = 280/316 (88%), Gaps = 7/316 (2%)
Strand = Plus / Minus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacgg-cacagtt 1501
|||||||||||||||| | ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 54831329 tgcggggagccgaggagatacaggaggctgaggaagggaactagcctgacgggcacagtt 54831270
Query: 1502 ccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggt 1561
|| ||||||||||||||| | |||||||| ||||||||| ||||| |||||| ||||
Sbjct: 54831269 ccgaaggcagggttccta-ctgagggaaaaaagcctacccgccggcacagttcagagggc 54831211
Query: 1562 aggtttagaaatagggaaaggggcttacccagtgg----cacagttccaagggcaagtta 1617
|||| ||||||||||||| ||||||||||||| || ||||||||| ||||||||||
Sbjct: 54831210 aggtatagaaatagggaatggggcttacccagcgggcggcacagttccgagggcaagttc 54831151
Query: 1618 taaaaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaagg 1677
|||||||||||||||||||||||||||| ||| ||| ||| |||||||||||| |||||
Sbjct: 54831150 taaaaataatgaggctcacctgctaacctgacagcaatggctacaataacaaaatgaagg 54831091
Query: 1678 -ttttgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttg 1736
|||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 54831090 cttttgcacaacagtgcaagaataaaaatcgcttcttggaaaaatcagtctttcctgtta 54831031
Query: 1737 tttacttattactcag 1752
||||||||||| ||||
Sbjct: 54831030 tttacttattattcag 54831015
Score = 111 bits (56), Expect = 1e-21
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 105103574 gagtttcaccttggtgaaattccccctattcagatctaatgcaagcaaaaacaaagtgtt 105103633
Query: 1898 cactggtttgttaccagtaa 1917
|| ||||||||||| |||||
Sbjct: 105103634 cattggtttgttacaagtaa 105103653
Score = 103 bits (52), Expect = 4e-19
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1841 gtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgttca 1899
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||
Sbjct: 123794940 gtttcaccttggtgaaattccccctattcagatctaatgtaagcaaaaacaaagtgttca 123794999
Query: 1900 ctggtttgttaccagtaaaa 1919
||||||||||| |||||||
Sbjct: 123795000 ttggtttgttacaagtaaaa 123795019
Score = 99.6 bits (50), Expect = 6e-18
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||
Sbjct: 88901033 gagtttcaccttggtgaaattccccctattcagatccaatgcaagcaaaaacaaagtgtt 88900974
Query: 1898 cactggtttgttaccagtaaaa 1919
|| ||| ||||||| |||||||
Sbjct: 88900973 cattggcttgttacaagtaaaa 88900952
Score = 97.6 bits (49), Expect = 2e-17
Identities = 71/77 (92%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 1842 tttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgttcac 1900
||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||
Sbjct: 54830908 tttcaccttggtgaaattccccctattcagatctaatgtaagcaaaaacaaagtgttcat 54830849
Query: 1901 tggtttgttaccagtaa 1917
||||||||||| |||||
Sbjct: 54830848 tggtttgttacaagtaa 54830832
>Sscrofa_ChrX
|| Length = 144288218
Score = 430 bits (217), Expect = e-117
Identities = 290/313 (92%), Gaps = 1/313 (0%)
Strand = Plus / Plus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 82812047 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 82812106
Query: 1503 caaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggta 1562
| |||||||||||||||||| ||| |||| ||||||||||| ||| ||||||| |||| |
Sbjct: 82812107 cgaaggcagggttcctaaccgaggaaaaaaagcctacccactggcacagttccgagggca 82812166
Query: 1563 ggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaa 1622
||||||||||||||||| | ||||||||||||||||||||| |||||||||| |||||
Sbjct: 82812167 agtttagaaatagggaaaaagacttacccagtggcacagttccgagggcaagttctaaaa 82812226
Query: 1623 ataatgaggctcacctgctaacccgactacaacggcaacaataac-aaaacgaaggtttt 1681
||||||||||||||||||||||| ||| |||||||| |||||||| |||| |||||||||
Sbjct: 82812227 ataatgaggctcacctgctaacctgacaacaacggctacaataacaaaaatgaaggtttt 82812286
Query: 1682 gcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttac 1741
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 82812287 gcacaatagtgcaagaataaaaattgctttttggaaaattcagtctttcctgttatttac 82812346
Query: 1742 ttattactcagcc 1754
|||||||||||||
Sbjct: 82812347 ttattactcagcc 82812359
Score = 391 bits (197), Expect = e-105
Identities = 282/309 (91%), Gaps = 1/309 (0%)
Strand = Plus / Minus
Query: 1441 actgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagt 1500
|||||||||||||||||| | |||||||||||||||||||||||||||||| || |||||
Sbjct: 74537185 actgcggggagccgaggagatacaggaggccaaggaagggaactagcctgatggtacagt 74537126
Query: 1501 tccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaaggg 1560
|||||||||||||||||||||| ||| |||| ||||||||| ||||| ||||||||||||
Sbjct: 74537125 tccaaaggcagggttcctaaccgaggaaaaa-agcctacccgccggcacagttccaaggg 74537067
Query: 1561 taggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataa 1620
|||||||||||||| |||| ||||||||| | |||||||||| |||||||||| |||
Sbjct: 74537066 caggtttagaaatagagaaaagggcttacctggcggcacagttctgagggcaagttctaa 74537007
Query: 1621 aaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttt 1680
||||||||||||||||||||||||| ||| |||||| ||||||||| ||| ||||| ||
Sbjct: 74537006 aaataatgaggctcacctgctaacctgacaacaacgacaacaataataaagtgaaggctt 74536947
Query: 1681 tgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgttta 1740
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 74536946 tacacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttattta 74536887
Query: 1741 cttattact 1749
|||||||||
Sbjct: 74536886 cttattact 74536878
Score = 391 bits (197), Expect = e-105
Identities = 282/309 (91%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 1441 actgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagt 1500
|||||||||||||||||| | |||||||||||||||||||||||||||||| || |||||
Sbjct: 74666825 actgcggggagccgaggagatacaggaggccaaggaagggaactagcctgatggtacagt 74666884
Query: 1501 tccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaaggg 1560
|||||||||||||||||||||| ||| |||| ||||||||| ||||| ||||||||||||
Sbjct: 74666885 tccaaaggcagggttcctaaccgaggaaaaa-agcctacccgccggcacagttccaaggg 74666943
Query: 1561 taggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataa 1620
|||||||||||||| |||| ||||||||| | |||||||||| |||||||||| |||
Sbjct: 74666944 caggtttagaaatagagaaaagggcttacctggcggcacagttctgagggcaagttctaa 74667003
Query: 1621 aaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttt 1680
||||||||||||||||||||||||| ||| |||||| ||||||||| ||| ||||| ||
Sbjct: 74667004 aaataatgaggctcacctgctaacctgacaacaacgacaacaataataaagtgaaggctt 74667063
Query: 1681 tgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgttta 1740
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 74667064 tacacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttattta 74667123
Query: 1741 cttattact 1749
|||||||||
Sbjct: 74667124 cttattact 74667132
Score = 391 bits (197), Expect = e-105
Identities = 285/313 (91%), Gaps = 1/313 (0%)
Strand = Plus / Plus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 83585592 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 83585651
Query: 1503 caaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggta 1562
| ||||||||||||||||| | | |||| |||||||| | ||| ||||||| |||| |
Sbjct: 83585652 cgaaggcagggttcctaactgatgaaaaaatgcctaccctctggcacagttccgagggca 83585711
Query: 1563 ggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaa 1622
||||||||||||||||||||||||||||| | |||||||||| ||| |||||| |||||
Sbjct: 83585712 ggtttagaaatagggaaaggggcttaccctgcggcacagttctgaggacaagttctaaaa 83585771
Query: 1623 ataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttg 1682
||||||||||||||| |||||||| || ||||||||||||||||||||| ||||| ||||
Sbjct: 83585772 ataatgaggctcaccagctaacccaacaacaacggcaacaataacaaaatgaaggctttg 83585831
Query: 1683 cacaatagtgcaagaat-aaaaattgcttcttggaaaattcagtctttcctgttgtttac 1741
||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 83585832 cacaatagtgcaagaataaaaaattgcttcttcgaaaattcagtctttcctgttatttac 83585891
Query: 1742 ttattactcagcc 1754
|||||||||||||
Sbjct: 83585892 ttattactcagcc 83585904
Score = 365 bits (184), Expect = 6e-98
Identities = 277/308 (89%)
Strand = Plus / Minus
Query: 1447 gggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaaa 1506
|||||||||||| | |||||||||||| ||||||||||||| |||||||||||||| |
Sbjct: 28680888 gggagccgaggagatacaggaggccaaagaagggaactagcttgacggcacagttctgta 28680829
Query: 1507 ggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtaggtt 1566
||||||||| |||||| ||| |||| |||||||| | ||| ||||||| |||| |||||
Sbjct: 28680828 ggcagggtttctaaccgaggaaaaaaagcctacctgcgggcacagttccgagggcaggtt 28680769
Query: 1567 tagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaataa 1626
|||||||||||||| || ||||||||| ||||||||| |||||||||| |||||||||
Sbjct: 28680768 tagaaatagggaaaaggacttacccagcagcacagttctgagggcaagttctaaaaataa 28680709
Query: 1627 tgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttgcaca 1686
||||||||||||||||||| || |||| ||||||||||||||||||||| ||||||||
Sbjct: 28680708 tgaggctcacctgctaacctaacaacaatggcaacaataacaaaacgaagtctttgcaca 28680649
Query: 1687 atagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttacttatt 1746
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 28680648 atagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttatttacttatt 28680589
Query: 1747 actcagcc 1754
||||||||
Sbjct: 28680588 actcagcc 28680581
Score = 349 bits (176), Expect = 4e-93
Identities = 277/310 (89%), Gaps = 3/310 (0%)
Strand = Plus / Minus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
|||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||| |
Sbjct: 78168690 tgcggggagccgaggagatgcaggaggccaagggagggaactagcctgatggcacagtcc 78168631
Query: 1503 caaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggta 1562
| |||||||||||||||||||||| |||| ||||||||||| ||| ||||||| | || |
Sbjct: 78168630 cgaaggcagggttcctaaccaaggaaaaaaagcctacccactggcacagttccgatggca 78168571
Query: 1563 ggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaa 1622
|||||||||||||||||| |||||||||| | |||||||||| |||||||||| |||||
Sbjct: 78168570 ggtttagaaatagggaaaagggcttaccctgcggcacagttctgagggcaagttctaaaa 78168511
Query: 1623 ataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttg 1682
||||||||||||||||||||||||||| |||| ||| |||||||||||| ||||| ||||
Sbjct: 78168510 ataatgaggctcacctgctaacccgacaacaatggctacaataacaaaatgaaggctttg 78168451
Query: 1683 cacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttact 1742
||||| ||||||||||||||||| ||||||||||||| |||||||| |||| ||||||
Sbjct: 78168450 cacaacagtgcaagaataaaaatcgcttcttggaaaaatcagtctt---tgttatttact 78168394
Query: 1743 tattactcag 1752
||||| ||||
Sbjct: 78168393 tattattcag 78168384
Score = 345 bits (174), Expect = 6e-92
Identities = 274/306 (89%), Gaps = 1/306 (0%)
Strand = Plus / Minus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
|||||||||| ||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 96145595 tgcggggagctgaggagattcaggaggccgaggaagggaactagcctgacggcacagttc 96145536
Query: 1503 caaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggta 1562
| ||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |
Sbjct: 96145535 cgaaggcagggttcctaaccaagggaaaaaagcctaccccccggcacagttccaagggca 96145476
Query: 1563 ggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaa 1622
|||||||||||||||||| |||||||||| | |||||||||| |||||||||| |||||
Sbjct: 96145475 ggtttagaaatagggaaaagggcttaccctgcggcacagttctgagggcaagttctaaaa 96145416
Query: 1623 ataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttg 1682
||||||||||||||||||||||| ||| |||| ||| |||||||||||| ||||| ||||
Sbjct: 96145415 ataatgaggctcacctgctaaccagacaacaatggctacaataacaaaatgaaggctttg 96145356
Query: 1683 cacaatagtgcaagaataaaaattgcttcttgg-aaaattcagtctttcctgttgtttac 1741
||||| | |||||||||||||| ||||||| |||| |||||||||| |||| |||||
Sbjct: 96145355 cacaacaaagcaagaataaaaatcatttcttggaaaaaatcagtctttcttgttatttac 96145296
Query: 1742 ttatta 1747
||||||
Sbjct: 96145295 ttatta 96145290
Score = 293 bits (148), Expect = 2e-76
Identities = 259/296 (87%)
Strand = Plus / Minus
Query: 1440 gactgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacag 1499
||||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||
Sbjct: 51210013 gactgcggggagccgaggagatgcaggaggctgaggaagggaactagcctgatggcacag 51209954
Query: 1500 ttccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagg 1559
||| |||||||||||||||||| ||| |||| ||||||||| || || |||||| | |
Sbjct: 51209953 ttctgaaggcagggttcctaaccgaggaaaaaaagcctaccctcctgcacagttctgaag 51209894
Query: 1560 gtaggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttata 1619
| ||||||||||||||||||| || ||||||| | || ||||||| |||||||||| ||
Sbjct: 51209893 gcaggtttagaaatagggaaaaggccttacccggcggtacagttctgagggcaagttcta 51209834
Query: 1620 aaaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggtt 1679
||||||||||||||||||||||||||| || |||| ||| |||||||||||| ||||| |
Sbjct: 51209833 aaaataatgaggctcacctgctaacccaacaacaatggctacaataacaaaatgaaggct 51209774
Query: 1680 ttgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgtt 1735
|||||||| ||| ||||||||||||| ||||||||||||| |||||||||| ||||
Sbjct: 51209773 ttgcacaacagtccaagaataaaaatcgcttcttggaaaaatcagtctttcttgtt 51209718
Score = 218 bits (110), Expect = 9e-54
Identities = 159/174 (91%), Gaps = 1/174 (0%)
Strand = Plus / Minus
Query: 1562 aggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaa 1621
||||||||||||||||||||||||||| | | |||||||||| | ||||||||| ||||
Sbjct: 32341392 aggtttagaaatagggaaaggggcttaactggcggcacagttcta-gggcaagttctaaa 32341334
Query: 1622 aataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggtttt 1681
|||||||||||||||||||||||||||| ||| ||||||||||| |||| ||||| |||
Sbjct: 32341333 aataatgaggctcacctgctaacccgacaacagtggcaacaataagaaaatgaaggcttt 32341274
Query: 1682 gcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgtt 1735
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 32341273 gcacaatagtgcaagaataaaagttgcttcttggaaaattcagtttttcctgtt 32341220
Score = 218 bits (110), Expect = 9e-54
Identities = 159/174 (91%), Gaps = 1/174 (0%)
Strand = Plus / Plus
Query: 1562 aggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaa 1621
||||||||||||||||||||||||||| | | |||||||||| | ||||||||| ||||
Sbjct: 32445491 aggtttagaaatagggaaaggggcttaactggcggcacagttcta-gggcaagttctaaa 32445549
Query: 1622 aataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggtttt 1681
|||||||||||||||||||||||||||| ||| ||||||||||| |||| ||||| |||
Sbjct: 32445550 aataatgaggctcacctgctaacccgacaacagtggcaacaataagaaaatgaaggcttt 32445609
Query: 1682 gcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgtt 1735
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 32445610 gcacaatagtgcaagaataaaagttgcttcttggaaaattcagtttttcctgtt 32445663
Score = 115 bits (58), Expect = 9e-23
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct: 82812446 gagtttcaccttggtgaaattcctcctattcagatctaatacaagcaaaaacaaagtgtt 82812505
Query: 1898 cactggtttgttaccagtaaaa 1919
|| ||||||||||| |||||||
Sbjct: 82812506 cattggtttgttacaagtaaaa 82812527
Score = 107 bits (54), Expect = 2e-20
Identities = 77/82 (93%), Gaps = 2/82 (2%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||
Sbjct: 74536773 gagtttcaccttggtgaaattccccc-attcagatctaatgcaagcaaaaacaaagtgtt 74536715
Query: 1898 cactggtttgttaccagtaaaa 1919
|||||||||||||| |||||||
Sbjct: 74536714 cactggtttgttacaagtaaaa 74536693
Score = 107 bits (54), Expect = 2e-20
Identities = 77/82 (93%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||
Sbjct: 74667237 gagtttcaccttggtgaaattccccc-attcagatctaatgcaagcaaaaacaaagtgtt 74667295
Query: 1898 cactggtttgttaccagtaaaa 1919
|||||||||||||| |||||||
Sbjct: 74667296 cactggtttgttacaagtaaaa 74667317
Score = 103 bits (52), Expect = 4e-19
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 28680482 gagtttcaccttggtgaaattccccctattcagatctaatgtaagcaaaaacaaagtgtt 28680423
Query: 1898 cactggtttgttaccagtaa 1917
|| ||||||||||| |||||
Sbjct: 28680422 cattggtttgttacgagtaa 28680403
Score = 103 bits (52), Expect = 4e-19
Identities = 75/80 (93%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 83586002 gagtttcaccttggtgaaattccccc-attcagatctaatacaagcaaaaacaaagtgtt 83586060
Query: 1898 cactggtttgttaccagtaa 1917
|| ||||||||||| |||||
Sbjct: 83586061 cattggtttgttacaagtaa 83586080
Score = 91.7 bits (46), Expect = 1e-15
Identities = 68/74 (91%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||| ||||||||||||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 32341109 gagtttcatcttggtgaaattccccctattcagatctaatgtaagcaaaaacaaagtgtt 32341050
Query: 1898 cactggtttgttac 1911
|| |||||||||||
Sbjct: 32341049 cattggtttgttac 32341036
Score = 91.7 bits (46), Expect = 1e-15
Identities = 68/74 (91%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||| ||||||||||||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 32445774 gagtttcatcttggtgaaattccccctattcagatctaatgtaagcaaaaacaaagtgtt 32445833
Query: 1898 cactggtttgttac 1911
|| |||||||||||
Sbjct: 32445834 cattggtttgttac 32445847
Score = 87.7 bits (44), Expect = 2e-14
Identities = 73/82 (89%), Gaps = 3/82 (3%)
Strand = Plus / Minus
Query: 1441 actgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagt 1500
||||||||||||| |||| |||||||||||||||| ||| ||||||||| ||||||||
Sbjct: 32341534 actgcggggagccaaggagacacaggaggccaagg---ggagctagcctgatggcacagt 32341478
Query: 1501 tccaaaggcagggttcctaacc 1522
|| ||||||||||||||||||
Sbjct: 32341477 tctgaaggcagggttcctaacc 32341456
Score = 87.7 bits (44), Expect = 2e-14
Identities = 73/82 (89%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 1441 actgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagt 1500
||||||||||||| |||| |||||||||||||||| ||| ||||||||| ||||||||
Sbjct: 32445349 actgcggggagccaaggagacacaggaggccaagg---ggagctagcctgatggcacagt 32445405
Query: 1501 tccaaaggcagggttcctaacc 1522
|| ||||||||||||||||||
Sbjct: 32445406 tctgaaggcagggttcctaacc 32445427
>Sscrofa_Chr03
|| Length = 144787322
Score = 416 bits (210), Expect = e-113
Identities = 288/314 (91%)
Strand = Plus / Minus
Query: 1441 actgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagt 1500
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 76531790 actgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagt 76531731
Query: 1501 tccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaaggg 1560
||| |||||||||||||||||| ||| |||| ||||||| ||||||| | |||| ||||
Sbjct: 76531730 tccgaaggcagggttcctaaccgaggaaaaaaagcctacacaccggcccggttctgaggg 76531671
Query: 1561 taggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataa 1620
|||||||||||||||||||||||||||||| | ||||||||||| |||||||||| |||
Sbjct: 76531670 caggtttagaaatagggaaaggggcttacccggcggcacagttccgagggcaagttctaa 76531611
Query: 1621 aaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttt 1680
|||||||||||||||||||||||||| || ||||| ||||||||| |||| ||||| ||
Sbjct: 76531610 aaataatgaggctcacctgctaacccaacagcaacgacaacaataataaaatgaaggctt 76531551
Query: 1681 tgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgttta 1740
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 76531550 tgcacaatagtgcaggaataaaagttgcttcttggaaaattcagtctttcctgttattta 76531491
Query: 1741 cttattactcagcc 1754
||||||||||||||
Sbjct: 76531490 cttattactcagcc 76531477
Score = 232 bits (117), Expect = 6e-58
Identities = 247/290 (85%), Gaps = 9/290 (3%)
Strand = Plus / Minus
Query: 1463 caggaggccaaggaagggaactagcctgacggcacagttccaaaggcagggttcctaacc 1522
|||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 64160605 caggaggccaaggaagggaactagcctgacagcacaattccgaaggcagggttcctaacc 64160546
Query: 1523 aagggaaaagagcctacccaccggcgcagttccaagggtaggtttagaaatagggaaagg 1582
||| |||| |||||||| || || ||||||| |||| |||||||||||||||||| |
Sbjct: 64160545 taggaaaaa-agcctacctgccagcacagttccgagggcgggtttagaaatagggaaaag 64160487
Query: 1583 ggcttacccagtggcacagttccaagggcaagttataaaaataatgaggctcacctgcta 1642
|| ||||||||| ||| |||||||||| |||||| |||||||| ||||| ||
Sbjct: 64160486 ggtttacccagt--------tcccagggcaagttctaaaaacaatgaggcccaccttgta 64160435
Query: 1643 acccgactacaacggcaacaataacaaaacgaaggttttgcacaatagtgcaagaataaa 1702
||| ||| |||| |||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct: 64160434 acctgacaacaatggcaacaataacaaaataaagactttgcacaacagtgcaagaataaa 64160375
Query: 1703 aattgcttcttggaaaattcagtctttcctgttgtttacttattactcag 1752
||| ||||||||||||| ||||| ||| ||||| ||||||||||| ||||
Sbjct: 64160374 aatcgcttcttggaaaaatcagtattttctgttatttacttattattcag 64160325
Score = 230 bits (116), Expect = 2e-57
Identities = 155/168 (92%)
Strand = Plus / Plus
Query: 1587 tacccagtggcacagttccaagggcaagttataaaaataatgaggctcacctgctaaccc 1646
||||| ||||||||||| | ||||||||| |||||||||||||||||||||| ||||||
Sbjct: 76142261 tacccggtggcacagtttcgtgggcaagttctaaaaataatgaggctcacctgttaaccc 76142320
Query: 1647 gactacaacggcaacaataacaaaacgaaggttttgcacaatagtgcaagaataaaaatt 1706
| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 76142321 agcaacaacggcaacaataacaaaatgaaggctttgcacaatagtgcaagaataaaaatt 76142380
Query: 1707 gcttcttggaaaattcagtctttcctgttgtttacttattactcagcc 1754
|||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 76142381 gcttcttggaaaattcagtcttccctgttatttacttattactcagcc 76142428
Score = 109 bits (55), Expect = 6e-21
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 1447 gggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaaa 1506
|||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 76142171 gggagccgaggatatacaggaggccaaggaagggagctagcctgacggcacagttccgaa 76142230
Query: 1507 ggcagggttcctaaccaagggaaaagagcctaccc 1541
||||| || |||||| ||| |||| |||||||||
Sbjct: 76142231 ggcagaatttctaaccgaggaaaaaaagcctaccc 76142265
Score = 103 bits (52), Expect = 4e-19
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
||||||||||||||||||| |||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 76142525 gagtttcaccttggtgaaagtccccctattcagatctaatgcaagcaaaaacaaagtgtt 76142584
Query: 1898 cactggtttgttaccagtaa 1917
|| ||||||||||| |||||
Sbjct: 76142585 cattggtttgttacaagtaa 76142604
Score = 97.6 bits (49), Expect = 2e-17
Identities = 71/77 (92%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 1842 tttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgttcac 1900
|||||||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||
Sbjct: 76531373 tttcaccttggtgaaagtccccctattcagatctaatgcaagcaaaaacgaagtgttcat 76531314
Query: 1901 tggtttgttaccagtaa 1917
||||||||||| |||||
Sbjct: 76531313 tggtttgttacaagtaa 76531297
Score = 83.8 bits (42), Expect = 3e-13
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaa 1888
||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 6843777 gagtttcaccttggtgaaatttcccctattcagatctaatacaagcaaaa 6843728
>Sscrofa_Chr11
|| Length = 87690581
Score = 404 bits (204), Expect = e-110
Identities = 286/310 (92%), Gaps = 5/310 (1%)
Strand = Plus / Minus
Query: 1446 ggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaa 1505
||||||||||||| | |||||||||| |||||||||||||||||||| |||||||||| |
Sbjct: 30567432 ggggagccgaggagatacaggaggccgaggaagggaactagcctgacagcacagttccga 30567373
Query: 1506 aggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtaggt 1565
|| |||||||||||||||||| |||| || |||||| ||||| ||||||| |||| ||||
Sbjct: 30567372 ag-cagggttcctaaccaaggaaaaaaagactacccgccggcacagttccgagggcaggt 30567314
Query: 1566 ttagaaatagggaaa-ggggcttacccagtggcacagttccaagggcaagttataaaaat 1624
||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 30567313 ttagaaatagggaaaaggggcttacccggtggcacagttccaagggcaagttctaaaaat 30567254
Query: 1625 aatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttgca 1684
|||||||||||||||||||||| || ||||||||||||||||||| ||||| ||||||
Sbjct: 30567253 aatgaggctcacctgctaacccaac---aacggcaacaataacaaaatgaaggctttgca 30567197
Query: 1685 caatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttactta 1744
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 30567196 caatagtgcaagaataaaaattgcttcttggaaaatttagtctttcctgttatttactta 30567137
Query: 1745 ttactcagcc 1754
||||||||||
Sbjct: 30567136 ttactcagcc 30567127
Score = 327 bits (165), Expect = 1e-86
Identities = 268/301 (89%), Gaps = 1/301 (0%)
Strand = Plus / Plus
Query: 1448 ggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaaag 1507
||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct: 54480899 ggagccgaggagatgcaggaggccaaggaagggaactaacctgatggcacagttcctaag 54480958
Query: 1508 gcagggttcctaaccaagggaaaaga-gcctacccaccggcgcagttccaagggtaggtt 1566
|||||||| |||||| |||||||| | |||||||| ||||| ||||||| |||| |||||
Sbjct: 54480959 gcagggtttctaaccgagggaaaaaaagcctacccgccggcacagttccgagggcaggtt 54481018
Query: 1567 tagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaataa 1626
| ||||||||||| ||||||||| | |||||| |||||||||||||| |||||||||
Sbjct: 54481019 ttaaaatagggaaaagggcttacctggcagcacagctccaagggcaagttctaaaaataa 54481078
Query: 1627 tgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttgcaca 1686
||||||||||||||||||||||| |||| ||||| |||||||||| ||||| ||||||||
Sbjct: 54481079 tgaggctcacctgctaacccgacaacaatggcaataataacaaaatgaaggctttgcaca 54481138
Query: 1687 atagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttacttatt 1746
| ||||||| ||||||||| ||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 54481139 acagtgcaaaaataaaaatcgcttcttggaaaaatcagtctttcctgttatttacttatt 54481198
Query: 1747 a 1747
|
Sbjct: 54481199 a 54481199
Score = 87.7 bits (44), Expect = 2e-14
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1843 ttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgttcact 1901
|||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||
Sbjct: 54481305 ttcaccttggtgaaattccccctattcagatctaatgtaagcaaaaacaaagtgttcata 54481364
Query: 1902 ggtttgttaccagtaa 1917
|||||||||| |||||
Sbjct: 54481365 ggtttgttacaagtaa 54481380
Score = 75.8 bits (38), Expect = 8e-11
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaacaa 1892
||||||||||||||| |||||||||||||||| ||||||| ||||||||||||
Sbjct: 30567025 gagtttcaccttggtaaaattccccctattcagatctaatgtaagcaaaaacaa 30566972
>Sscrofa_Chr01
|| Length = 315321322
Score = 404 bits (204), Expect = e-110
Identities = 285/312 (91%)
Strand = Plus / Minus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
|||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct: 63877659 tgcggggagccgaggagattcaggaggccaaggaagggaactagcctgaccgcacagttc 63877600
Query: 1503 caaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggta 1562
|||||||||||||||||||||||| |||| |||||||| || || |||||| |||| |
Sbjct: 63877599 caaaggcagggttcctaaccaaggaaaaaaggcctacccgccagcacagttctgagggca 63877540
Query: 1563 ggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaa 1622
|||||||||||||||||| |||||||||| ||||||||||||| |||| ||||| |||||
Sbjct: 63877539 ggtttagaaatagggaaaagggcttacccggtggcacagttccgagggtaagttctaaaa 63877480
Query: 1623 ataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttg 1682
||||||||||||||||||||||| ||| |||| | ||||||||| |||| ||||| ||||
Sbjct: 63877479 ataatgaggctcacctgctaaccggacaacaatgacaacaataataaaatgaaggctttg 63877420
Query: 1683 cacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttact 1742
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 63877419 cgcaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttatttact 63877360
Query: 1743 tattactcagcc 1754
||||||||||||
Sbjct: 63877359 tattactcagcc 63877348
Score = 367 bits (185), Expect = 2e-98
Identities = 279/309 (90%), Gaps = 1/309 (0%)
Strand = Plus / Minus
Query: 1446 ggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaa 1505
|||||||| |||| | ||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 100439383 ggggagccaaggagatgcaggaggccaaggaagggaactagcctgatggcacagttcgga 100439324
Query: 1506 aggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtaggt 1565
|||||||||||||||| |||||||| |||||||| |||||| ||||||| |||| ||||
Sbjct: 100439323 aggcagggttcctaactgagggaaaaaagcctaccaaccggcacagttccgagggcaggt 100439264
Query: 1566 ttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaata 1625
||| ||||||||||| || | | |||| |||||||||||||||||||||| ||||||||
Sbjct: 100439263 ttaaaaatagggaaaaggacctccccac-ggcacagttccaagggcaagttctaaaaata 100439205
Query: 1626 atgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttgcac 1685
|||||||||||||||||||| ||| |||| |||||||||||||||| |||||||||||||
Sbjct: 100439204 atgaggctcacctgctaacctgacaacaatggcaacaataacaaaatgaaggttttgcac 100439145
Query: 1686 aatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttacttat 1745
||||||| ||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 100439144 aatagtgaaagaataaagatcgcttcttggaaaattcagtctttcctgttatttacttat 100439085
Query: 1746 tactcagcc 1754
|||||||||
Sbjct: 100439084 tactcagcc 100439076
Score = 359 bits (181), Expect = 4e-96
Identities = 274/305 (89%)
Strand = Plus / Minus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
||||| |||||||||| | ||||||||| |||||||||||||||||||| ||||||||
Sbjct: 275306384 tgcggagagccgaggagatgcaggaggccgaggaagggaactagcctgaccacacagttc 275306325
Query: 1503 caaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggta 1562
| |||||||||||||||||| ||| |||| ||||||||| ||||| ||||||| |||| |
Sbjct: 275306324 cgaaggcagggttcctaaccgaggaaaaaaagcctacccgccggcacagttccgagggca 275306265
Query: 1563 ggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaa 1622
||||| |||||||||||| ||||||| |||| ||||||||||| |||||||||| |||||
Sbjct: 275306264 ggtttcgaaatagggaaaagggcttagccagcggcacagttccgagggcaagttctaaaa 275306205
Query: 1623 ataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttg 1682
||||||||||||||||||||||||||| |||| ||| |||||||||||| ||||| ||||
Sbjct: 275306204 ataatgaggctcacctgctaacccgacaacaatggctacaataacaaaatgaaggctttg 275306145
Query: 1683 cacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttact 1742
||||| ||||||||||||||||| ||||||||||||| |||||||||| |||| ||||||
Sbjct: 275306144 cacaacagtgcaagaataaaaatcgcttcttggaaaaatcagtctttcttgttatttact 275306085
Query: 1743 tatta 1747
|||||
Sbjct: 275306084 tatta 275306080
Score = 339 bits (171), Expect = 3e-90
Identities = 275/307 (89%), Gaps = 2/307 (0%)
Strand = Plus / Plus
Query: 1442 ctgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagtt 1501
|||| |||||||||||| | ||||||||| ||||||||||||||||||| |||||||||
Sbjct: 103233895 ctgcagggagccgaggagatgcaggaggccgaggaagggaactagcctgatggcacagtt 103233954
Query: 1502 ccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggt 1561
|| |||||||||||||||||| ||| |||| ||||||||| ||||| ||||||| ||||
Sbjct: 103233955 ccgaaggcagggttcctaaccgaggaaaaaaagcctacccgccggcacagttccgagggc 103234014
Query: 1562 aggtttagaaatagggaaaggggctt-acccagtggcacagttccaagggcaagttataa 1620
|||||||||||| |||||| |||||| ||| ||||||||||||| || ||||||| |||
Sbjct: 103234015 aggtttagaaat-gggaaaagggcttaacctggtggcacagttcccagagcaagttctaa 103234073
Query: 1621 aaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttt 1680
||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| ||
Sbjct: 103234074 aaataatgaggctcacctgctaacctgacaacaacggcaacaataacaaaatgaaggctt 103234133
Query: 1681 tgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgttta 1740
|||||| ||||||||||||||||| ||||||||||||| |||||||||| |||| ||||
Sbjct: 103234134 tgcacagcagtgcaagaataaaaatcgcttcttggaaaaatcagtctttcttgttattta 103234193
Query: 1741 cttatta 1747
|||||||
Sbjct: 103234194 cttatta 103234200
Score = 319 bits (161), Expect = 3e-84
Identities = 281/317 (88%), Gaps = 3/317 (0%)
Strand = Plus / Minus
Query: 1440 gactgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacag 1499
|||||||| ||||| |||| | || ||||||||||||||||||||||||||| |||||||
Sbjct: 311931885 gactgcggagagccaaggagatactggaggccaaggaagggaactagcctgaaggcacag 311931826
Query: 1500 ttccaaaggcagggttcctaaccaagggaaaaga-gcctacccaccggcgcagttccaag 1558
||| ||||||||||||||||| ||| |||| | |||||||| | ||| |||||| ||
Sbjct: 311931825 ttctgaaggcagggttcctaactgaggaaaaaaaagcctacccgctggcacagttctgag 311931766
Query: 1559 ggtaggtttagaaatagggaaa-ggggcttacccagtggcacagttccaagggcaagtta 1617
|| |||||||| || ||||||| ||||||||||||| |||||||||||| | |||||||
Sbjct: 311931765 ggcaggtttaggaacagggaaaaggggcttacccaggggcacagttcca-gagcaagttc 311931707
Query: 1618 taaaaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaagg 1677
||||||||||||||||||||||||||||| || |||| ||||||| |||||||| |||||
Sbjct: 311931706 taaaaataatgaggctcacctgctaacccaacaacaatggcaacagtaacaaaatgaagg 311931647
Query: 1678 ttttgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgt 1737
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
Sbjct: 311931646 ctttgcacaatagtgcaagaaaaaaaattgcttctgggaaaattcagtctttcctgttat 311931587
Query: 1738 ttacttattactcagcc 1754
|||||||||| ||||||
Sbjct: 311931586 ttacttattattcagcc 311931570
Score = 297 bits (150), Expect = 1e-77
Identities = 238/266 (89%), Gaps = 1/266 (0%)
Strand = Plus / Plus
Query: 1439 tgactgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcaca 1498
||||||||| |||||||||| | ||||||||| ||||||||||||||||||| ||||||
Sbjct: 83403212 tgactgcggagagccgaggagatgcaggaggccgaggaagggaactagcctgaaggcaca 83403271
Query: 1499 gttccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaag 1558
||||| |||||||||||||||||| ||| |||| ||||||||| || || ||||||||||
Sbjct: 83403272 gttccgaaggcagggttcctaaccgaggaaaaaaagcctacccgccagcacagttccaag 83403331
Query: 1559 ggtaggttt-agaaatagggaaaggggcttacccagtggcacagttccaagggcaagtta 1617
|| |||||| | ||||||||||| |||||||||| | |||||||||| ||||||||||
Sbjct: 83403332 ggcaggttttaaaaatagggaaaagggcttacccggcggcacagttctgagggcaagttc 83403391
Query: 1618 taaaaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaagg 1677
|||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 83403392 taaaaacattgaggctcacctgctaacccgacaacaacggcaacaataacaaaatgaagg 83403451
Query: 1678 ttttgcacaatagtgcaagaataaaa 1703
||||||||| |||||||||||||||
Sbjct: 83403452 ctttgcacaacagtgcaagaataaaa 83403477
Score = 262 bits (132), Expect = 6e-67
Identities = 266/308 (86%), Gaps = 2/308 (0%)
Strand = Plus / Plus
Query: 1447 gggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaaa 1506
||||||| |||| | |||||| ||||||||| |||| |||||||| |||||||||| |
Sbjct: 311916068 gggagccaaggagatacaggaagccaaggaaaggaagtagcctgaaggcacagttctga- 311916126
Query: 1507 ggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtaggtt 1566
||||| |||||||||| || |||| ||||||||| | | | |||||| |||| ||||
Sbjct: 311916127 ggcagagttcctaaccgagttaaaaaagcctacccgctg-cacagttctgagggcaggta 311916185
Query: 1567 tagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaataa 1626
|||||||||||||| ||||||||| | ||||||||||| |||||||||| |||||||||
Sbjct: 311916186 tagaaatagggaaaagggcttaccaggcggcacagttcctagggcaagttctaaaaataa 311916245
Query: 1627 tgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttgcaca 1686
| | |||||||||||||||| |||| ||||||| |||||||| ||||| ||||||||
Sbjct: 311916246 tcatgctcacctgctaacccagtaacaatggcaacagtaacaaaatgaaggctttgcaca 311916305
Query: 1687 atagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttacttatt 1746
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 311916306 atagtgcaagaataaaaattgcttctgggaaaattcagtctttcctgttatttacttatt 311916365
Query: 1747 actcagcc 1754
| ||||||
Sbjct: 311916366 attcagcc 311916373
Score = 228 bits (115), Expect = 9e-57
Identities = 148/159 (93%)
Strand = Plus / Plus
Query: 1595 ggcacagttccaagggcaagttataaaaataatgaggctcacctgctaacccgactacaa 1654
|||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 74946870 ggcatagttccaaaggcaagttataaaaataatgaggctcacctgctaacctgacagcaa 74946929
Query: 1655 cggcaacaataacaaaacgaaggttttgcacaatagtgcaagaataaaaattgcttcttg 1714
||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||
Sbjct: 74946930 cggcaacaataacaaaatgaaggctttgcacaatagtggaagaataaaaattgctttttg 74946989
Query: 1715 gaaaattcagtctttcctgttgtttacttattactcagc 1753
||||||||||||||||||||| ||||||||||| |||||
Sbjct: 74946990 gaaaattcagtctttcctgttatttacttattaatcagc 74947028
Score = 224 bits (113), Expect = 1e-55
Identities = 185/209 (88%)
Strand = Plus / Minus
Query: 1544 cggcgcagttccaagggtaggtttagaaatagggaaaggggcttacccagtggcacagtt 1603
|||| ||||||| |||| ||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 111484314 cggcacagttccgagggcaggtttagaaatagggaaaagggcttaccaggtggcacagtt 111484255
Query: 1604 ccaagggcaagttataaaaataatgaggctcacctgctaacccgactacaacggcaacaa 1663
|| |||||||||| |||||| | ||||||||||||||||||||||| |||| ||||||||
Sbjct: 111484254 ccgagggcaagttctaaaaacagtgaggctcacctgctaacccgacaacaatggcaacaa 111484195
Query: 1664 taacaaaacgaaggttttgcacaatagtgcaagaataaaaattgcttcttggaaaattca 1723
|||||||| ||||| ||||||||| ||| ||||||| |||| ||||||||||||||||
Sbjct: 111484194 taacaaaatgaaggctttgcacaacagtacaagaatggaaatctcttcttggaaaattca 111484135
Query: 1724 gtctttcctgttgtttacttattactcag 1752
|||||||||| | | ||||||||| ||||
Sbjct: 111484134 gtctttcctgctatctacttattattcag 111484106
Score = 224 bits (113), Expect = 1e-55
Identities = 185/209 (88%)
Strand = Plus / Plus
Query: 1544 cggcgcagttccaagggtaggtttagaaatagggaaaggggcttacccagtggcacagtt 1603
|||| ||||||| |||| ||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 111569912 cggcacagttccgagggcaggtttagaaatagggaaaagggcttaccaggtggcacagtt 111569971
Query: 1604 ccaagggcaagttataaaaataatgaggctcacctgctaacccgactacaacggcaacaa 1663
|| |||||||||| |||||| | ||||||||||||||||||||||| |||| ||||||||
Sbjct: 111569972 ccgagggcaagttctaaaaacagtgaggctcacctgctaacccgacaacaatggcaacaa 111570031
Query: 1664 taacaaaacgaaggttttgcacaatagtgcaagaataaaaattgcttcttggaaaattca 1723
|||||||| ||||| ||||||||| ||| ||||||| |||| ||||||||||||||||
Sbjct: 111570032 taacaaaatgaaggctttgcacaacagtacaagaatggaaatctcttcttggaaaattca 111570091
Query: 1724 gtctttcctgttgtttacttattactcag 1752
|||||||||| | | ||||||||| ||||
Sbjct: 111570092 gtctttcctgctatctacttattattcag 111570120
Score = 218 bits (110), Expect = 9e-54
Identities = 177/198 (89%), Gaps = 1/198 (0%)
Strand = Plus / Minus
Query: 1557 agggtaggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagtt 1616
|||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |
Sbjct: 312262679 agggcaggtttagaaatacggaaaagggcttacctggtggcacagttccaagggcaagct 312262620
Query: 1617 ataaaaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaag 1676
|||||| ||||||||||||||||||||||||| |||| |||||||| ||||||| ||||
Sbjct: 312262619 ctaaaaacaatgaggctcacctgctaacccgacaacaatggcaacaacaacaaaatgaag 312262560
Query: 1677 gttttgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttg 1736
| ||||||||| ||||||||||||||| | ||||||| ||||| |||||||||||||||
Sbjct: 312262559 gctttgcacaacagtgcaagaataaaagtcgcttctt-gaaaaatcagtctttcctgtta 312262501
Query: 1737 tttacttattactcagcc 1754
|| |||||||| ||||||
Sbjct: 312262500 ttaacttattattcagcc 312262483
Score = 206 bits (104), Expect = 3e-50
Identities = 191/220 (86%)
Strand = Plus / Plus
Query: 1533 agcctacccaccggcgcagttccaagggtaggtttagaaatagggaaaggggcttaccca 1592
||||||| ||| ||| ||||||||||||||| |||||||||||||||| | ||||| |||
Sbjct: 312009779 agcctactcactggcacagttccaagggtagatttagaaatagggaaaagtgcttatcca 312009838
Query: 1593 gtggcacagttccaagggcaagttataaaaataatgaggctcacctgctaacccgactac 1652
| ||||||||||| |||||||| | |||||| |||||||||||||||||||||| || ||
Sbjct: 312009839 gaggcacagttccgagggcaaggtctaaaaacaatgaggctcacctgctaacccaacaac 312009898
Query: 1653 aacggcaacaataacaaaacgaaggttttgcacaatagtgcaagaataaaaattgcttct 1712
|| ||||||||| |||||| | ||| ||||||||| ||||||||| | |||| ||||||
Sbjct: 312009899 aatggcaacaatgacaaaatgcaggctttgcacaacagtgcaagagtggaaatcgcttct 312009958
Query: 1713 tggaaaattcagtctttcctgttgtttacttattactcag 1752
|||||||||||||||||| | | ||||||||||| ||||
Sbjct: 312009959 tggaaaattcagtctttcttctcatttacttattattcag 312009998
Score = 167 bits (84), Expect = 3e-38
Identities = 108/116 (93%)
Strand = Plus / Plus
Query: 1442 ctgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagtt 1501
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct: 74946767 ctgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcaccgtt 74946826
Query: 1502 ccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaa 1557
|| |||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct: 74946827 ccgaaggcagggttcctaaccaaggaaaaaaagcctacccaccggcatagttccaa 74946882
Score = 159 bits (80), Expect = 7e-36
Identities = 174/204 (85%), Gaps = 1/204 (0%)
Strand = Plus / Plus
Query: 1549 cagttccaagggtaggtttagaaatagggaaaggggcttacccagtggcacagttccaag 1608
||||||||||||||| |||||||||||||||| | | ||| |||| |||| |||||| ||
Sbjct: 311793994 cagttccaagggtagatttagaaatagggaaaagtgtttatccagaggcagagttccgag 311794053
Query: 1609 ggcaagttataaaaataatgaggctcacctgctaacccgactacaacggcaacaataaca 1668
|||||| | |||||| |||||||||||||||||||||| || | || ||||||||| |||
Sbjct: 311794054 ggcaaggtctaaaaacaatgaggctcacctgctaacccaac-ataatggcaacaatgaca 311794112
Query: 1669 aaacgaaggttttgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctt 1728
||| | ||| ||||||||| ||||||||| | |||| |||||||| |||||||||||||
Sbjct: 311794113 aaatgcaggctttgcacaacagtgcaagagtggaaatcgcttcttgtaaaattcagtctt 311794172
Query: 1729 tcctgttgtttacttattactcag 1752
|| | | ||||||||||| ||||
Sbjct: 311794173 tcttctcatttacttattattcag 311794196
Score = 115 bits (58), Expect = 9e-23
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 63443871 gagtttcaccttggtgaaattccccctattcagatctaatgcaagcaaaaacaaagtgtt 63443812
Query: 1898 cactggtttgttaccagtaaaa 1919
|| ||||||||||| |||||||
Sbjct: 63443811 cattggtttgttacaagtaaaa 63443790
Score = 103 bits (52), Expect = 4e-19
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 100438975 gagtttcaccttggtgaaattccccctattcagatctaatgaaagcaaaaacaaagtgtt 100438916
Query: 1898 cactggtttgttaccagtaa 1917
|| ||||||||||| |||||
Sbjct: 100438915 cattggtttgttacaagtaa 100438896
Score = 101 bits (51), Expect = 1e-18
Identities = 73/79 (92%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 1842 tttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgttcac 1900
||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||
Sbjct: 63877244 tttcaccttggtgaaattccccctattcagatctaatgtaagcaaaaacaaagtgttcac 63877185
Query: 1901 tggtttgttaccagtaaaa 1919
|| |||||||| |||||||
Sbjct: 63877184 tgttttgttacaagtaaaa 63877166
Score = 95.6 bits (48), Expect = 9e-17
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||| ||||||||| ||||||||||| ||||||| |||||||||| |||||||
Sbjct: 311931470 gagtttcaccctggtgaaatcccccctattcagatctaatgtaagcaaaaacaaagtgtt 311931411
Query: 1898 cactggtttgttaccagtaa 1917
|||||||||||||| |||||
Sbjct: 311931410 cactggtttgttacaagtaa 311931391
Score = 83.8 bits (42), Expect = 3e-13
Identities = 73/82 (89%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||| |||||||||||||||| |||| ||||| | | ||||||||| |||||||
Sbjct: 311916474 gagtttcaccctggtgaaattccccctcttcagatctagtgctagcaaaaacaaagtgtt 311916533
Query: 1898 cactggtttgttaccagtaaaa 1919
|| ||||||||||| |||||||
Sbjct: 311916534 cattggtttgttacaagtaaaa 311916555
Score = 71.9 bits (36), Expect = 1e-09
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaat 1878
|||||||||||||||||||||||||||||||| |||||||
Sbjct: 74947129 gagtttcaccttggtgaaattccccctattcagatctaat 74947168
Score = 71.9 bits (36), Expect = 1e-09
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 1441 actgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagt 1500
||||| ||||||| |||| | ||||||||||||||| ||||||||||| ||||||||||
Sbjct: 111484365 actgcagggagccaaggagatgcaggaggccaaggaaaggaactagcctaacggcacagt 111484306
Query: 1501 tccaaaggcagg 1512
||| | ||||||
Sbjct: 111484305 tccgagggcagg 111484294
Score = 71.9 bits (36), Expect = 1e-09
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 1441 actgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagt 1500
||||| ||||||| |||| | ||||||||||||||| ||||||||||| ||||||||||
Sbjct: 111569861 actgcagggagccaaggagatgcaggaggccaaggaaaggaactagcctaacggcacagt 111569920
Query: 1501 tccaaaggcagg 1512
||| | ||||||
Sbjct: 111569921 tccgagggcagg 111569932
Score = 67.9 bits (34), Expect = 2e-08
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 1447 gggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaaa 1506
|||||||||||| | || |||||||||||||||||||||||||| ||||||| ||| |
Sbjct: 312262737 gggagccgaggagatgcaagaggccaaggaagggaactagcctgatggcacagctccgag 312262678
Query: 1507 ggcagg 1512
||||||
Sbjct: 312262677 ggcagg 312262672
Score = 65.9 bits (33), Expect = 8e-08
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 1842 tttcaccttggtgaaattccccctattcaaatctaat 1878
||||||||||||| |||||||||||||||||||||||
Sbjct: 111484004 tttcaccttggtggaattccccctattcaaatctaat 111483968
Score = 65.9 bits (33), Expect = 8e-08
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1842 tttcaccttggtgaaattccccctattcaaatctaat 1878
||||||||||||| |||||||||||||||||||||||
Sbjct: 111570222 tttcaccttggtggaattccccctattcaaatctaat 111570258
Score = 63.9 bits (32), Expect = 3e-07
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 1701 aaaattgcttcttggaaaattcagtctttcctgttgtttacttattactcag 1752
||||| ||||||||||||| ||||||||| ||||| ||||||||||| ||||
Sbjct: 83403761 aaaatcgcttcttggaaaaatcagtcttttctgttatttacttattattcag 83403812
>Sscrofa_Chr09
|| Length = 153670197
Score = 398 bits (201), Expect = e-108
Identities = 285/313 (91%)
Strand = Plus / Minus
Query: 1442 ctgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagtt 1501
|||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 115371598 ctgcggggagccaaggagatccaggaggccaaggaagggaactagcctgacggcacagtt 115371539
Query: 1502 ccaaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggt 1561
| ||||||||||||||||| ||| |||| |||||||| | ||| |||||| ||||
Sbjct: 115371538 ctgaaggcagggttcctaacagaggaaaaaaagcctacctgctggcacagttctgagggc 115371479
Query: 1562 aggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaa 1621
||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| ||||
Sbjct: 115371478 aggtttagaaatagggaaaagggcttaccctgtggcccagttccaagggcaagttctaaa 115371419
Query: 1622 aataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggtttt 1681
|||||||||||||||||||||||| ||| |||||||||||||| |||||| ||||| |||
Sbjct: 115371418 aataatgaggctcacctgctaacctgacaacaacggcaacaatcacaaaatgaaggcttt 115371359
Query: 1682 gcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttac 1741
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 115371358 gcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttatttac 115371299
Query: 1742 ttattactcagcc 1754
|||||||| ||||
Sbjct: 115371298 ttattacttagcc 115371286
Score = 335 bits (169), Expect = 5e-89
Identities = 272/305 (89%), Gaps = 1/305 (0%)
Strand = Plus / Minus
Query: 1443 tgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttc 1502
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 102864981 tgcggggagccgaggagatgcaggaggccaaggaagggaactagcctgacggcacagttc 102864922
Query: 1503 caaaggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggta 1562
||||||| |||||||||| ||| |||| ||||| ||| || || |||||||||||| |
Sbjct: 102864921 tgaaggcagcgttcctaaccgaggaaaaaaagcctccccgccagcacagttccaagggca 102864862
Query: 1563 ggtttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaa 1622
|||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |||||
Sbjct: 102864861 ggtttagaaatagggaaaagggcttacccggtggcacagttccgagggcaagttctaaaa 102864802
Query: 1623 ataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggttttg 1682
||||||||||||||||||||||| ||| | || ||| |||||||||||| ||||| ||||
Sbjct: 102864801 ataatgaggctcacctgctaacctgacaagaatggctacaataacaaaatgaaggctttg 102864742
Query: 1683 cacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtttact 1742
||||| ||||||||||| ||||| ||||||||||||| |||||||||| || ||||||
Sbjct: 102864741 cacaacagtgcaagaat-aaaatcgcttcttggaaaaatcagtctttcttgccatttact 102864683
Query: 1743 tatta 1747
|||||
Sbjct: 102864682 tatta 102864678
Score = 252 bits (127), Expect = 6e-64
Identities = 188/207 (90%), Gaps = 1/207 (0%)
Strand = Plus / Plus
Query: 1549 cagttccaagggtaggtttagaaatagggaaaggggcttacccagtggcacagttccaag 1608
||||||| |||| ||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct: 149186308 cagttccgagggcaggtttagaaatagggaaaggggcttacctggcggcccagttccaag 149186367
Query: 1609 ggcaagttataaaaataatgaggctcacctgctaacccgactacaacggcaacaataaca 1668
|||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 149186368 ggcaagttctaaaaataatgaggctcacctgctaacccaacaacaacagcaacaataaca 149186427
Query: 1669 aaacgaaggttttgcacaatagtgcaagaat-aaaaattgcttcttggaaaattcagtct 1727
||| ||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 149186428 aaatgaaggctctgcacaatagtgcaagaataaaaaatcacttcttggaaaattcagtct 149186487
Query: 1728 ttcctgttgtttacttattactcagcc 1754
|||||||| ||||| ||| ||||||||
Sbjct: 149186488 ttcctgttatttacctataactcagcc 149186514
Score = 224 bits (113), Expect = 1e-55
Identities = 170/189 (89%)
Strand = Plus / Minus
Query: 1446 ggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttccaa 1505
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 54914358 ggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttccta 54914299
Query: 1506 aggcagggttcctaaccaagggaaaagagcctacccaccggcgcagttccaagggtaggt 1565
||||||||| ||||||| ||| |||| ||||||||| || || |||||| |||| ||||
Sbjct: 54914298 aggcagggtacctaaccgaggaaaaaaagcctacccgccagcacagttctgagggcaggt 54914239
Query: 1566 ttagaaatagggaaaggggcttacccagtggcacagttccaagggcaagttataaaaata 1625
||||||| ||||||| |||||||||| | ||||||||||| |||||||||| ||||||||
Sbjct: 54914238 ttagaaacagggaaaagggcttacccggcggcacagttccgagggcaagttctaaaaata 54914179
Query: 1626 atgaggctc 1634
|||||||||
Sbjct: 54914178 atgaggctc 54914170
Score = 186 bits (94), Expect = 3e-44
Identities = 126/136 (92%), Gaps = 3/136 (2%)
Strand = Plus / Minus
Query: 1619 aaaaataatgaggctcacctgctaacccgactacaacggcaacaataacaaaacgaaggt 1678
||||| || |||||||||||||||||||||| |||| ||||||||| |||| |||||
Sbjct: 54913908 aaaaaaaaagaggctcacctgctaacccgac---aacgacaacaataataaaatgaaggc 54913852
Query: 1679 tttgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttgtt 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 54913851 tttgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctttcctgttatt 54913792
Query: 1739 tacttattactcagcc 1754
||||||||||||||||
Sbjct: 54913791 tacttattactcagcc 54913776
Score = 182 bits (92), Expect = 5e-43
Identities = 158/180 (87%)
Strand = Plus / Minus
Query: 1549 cagttccaagggtaggtttagaaatagggaaaggggcttacccagtggcacagttccaag 1608
||||||| | || ||||||||||||||||||| ||||||||| | |||||||||| ||
Sbjct: 2334855 cagttccgaaggcaggtttagaaatagggaaaagggcttacctggcggcacagttctgag 2334796
Query: 1609 ggcaagttataaaaataatgaggctcacctgctaacccgactacaacggcaacaataaca 1668
|||||||| |||||||||||||||| |||||||||||| || |||| ||| |||||||||
Sbjct: 2334795 ggcaagttctaaaaataatgaggcttacctgctaacccaacaacaatggctacaataaca 2334736
Query: 1669 aaacgaaggttttgcacaatagtgcaagaataaaaattgcttcttggaaaattcagtctt 1728
||| ||||| ||||||||| |||||| |||||||||| |||||||||||| ||||||||
Sbjct: 2334735 aaatgaaggctttgcacaacagtgcaggaataaaaatcacttcttggaaaaatcagtctt 2334676
Score = 123 bits (62), Expect = 4e-25
Identities = 78/82 (95%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 149186615 gagtttcaccttggtgaaattccccctattcagatctaatacaagcaaaaacaaagtgtt 149186674
Query: 1898 cactggtttgttaccagtaaaa 1919
|| ||||||||||| |||||||
Sbjct: 149186675 cattggtttgttacaagtaaaa 149186696
Score = 121 bits (61), Expect = 2e-24
Identities = 80/85 (94%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 1836 aatgagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagt 1894
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct: 54913694 aatgagtttcaccttggtgaaattccccctattcagatctaatgcaagcaaaaacaaagt 54913635
Query: 1895 gttcactggtttgttaccagtaaaa 1919
||||| ||||||||||| |||||||
Sbjct: 54913634 gttcattggtttgttacaagtaaaa 54913610
Score = 103 bits (52), Expect = 4e-19
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
|||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 115371185 gagtttcaccttggtgaaattccccctattcagatctaatgtaagcaaaaacaaagtgtt 115371126
Query: 1898 cactggtttgttaccagtaa 1917
|| ||||||||||| |||||
Sbjct: 115371125 cattggtttgttacaagtaa 115371106
Score = 95.6 bits (48), Expect = 9e-17
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1441 actgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagt 1500
||||||||||||| |||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct: 149186252 actgcggggagccaaggagatacaggaggccaaggaagggaactagcctgacagcacagt 149186311
Query: 1501 tccaaaggcagg 1512
||| | ||||||
Sbjct: 149186312 tccgagggcagg 149186323
Score = 87.7 bits (44), Expect = 2e-14
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 1839 gagtttcaccttggtgaaattccccctattcaaatctaatacaagcaaaaac-aagtgtt 1897
||||||||||||| |||||||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 102864573 gagtttcaccttgatgaaattccccctattcagatctaatgtaagcaaaaacaaagtgtt 102864514
Query: 1898 cactggtttgttaccagtaa 1917
| ||||||||||| |||||
Sbjct: 102864513 cgttggtttgttacaagtaa 102864494
Score = 85.7 bits (43), Expect = 8e-14
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 1442 ctgcggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagtt 1501
|||||||||||| |||| | ||||||||||||||||||||||||| |||| ||||||||
Sbjct: 2334910 ctgcggggagccaaggagatgcaggaggccaaggaagggaactagcttgacagcacagtt 2334851
Query: 1502 ccaaaggcagg 1512
|| ||||||||
Sbjct: 2334850 ccgaaggcagg 2334840
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,361,405
Number of extensions: 957
Number of successful extensions: 957
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 828
Number of HSP's successfully gapped: 265
Length of query: 1919
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1897
Effective length of database: 2,808,408,574
Effective search space: 5327551064878
Effective search space used: 5327551064878
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)