Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000645
(1117 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030265.1| integral membrane protein 2B [Bos taurus]. 510 e-145
Alignment gi|NP_001075007.1| integral membrane protein 2C [Bos taurus]. 222 5e-58
Alignment gi|XP_002691878.1| PREDICTED: hypothetical protein [Bos taurus]. 115 7e-26
Alignment gi|XP_002700958.1| PREDICTED: hypothetical protein [Bos taurus]. 115 7e-26
>ref|NP_001030265.1| integral membrane protein 2B [Bos taurus].
Length = 266
Score = 510 bits (1314), Expect = e-145
Identities = 247/265 (93%), Positives = 254/265 (95%)
Frame = +3
Query: 150 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTVAVDCKDPDEVVPVGQRRAWCWCMCFG 329
MVKVTFNSALAQKEAKKDE KSGEEALIIPPD VAVDCKDPDEVVPVGQRRAWCWCMCFG
Sbjct: 1 MVKVTFNSALAQKEAKKDESKSGEEALIIPPDAVAVDCKDPDEVVPVGQRRAWCWCMCFG 60
Query: 330 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 509
LAFMLAGVILGGAYLYKYFA QPDDVYYCGIKYIKDDVILNEP A+APA+RYQTIEENIK
Sbjct: 61 LAFMLAGVILGGAYLYKYFAFQPDDVYYCGIKYIKDDVILNEPSADAPASRYQTIEENIK 120
Query: 510 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 689
IFEED VEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPP+NL
Sbjct: 121 IFEEDEVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPKNL 180
Query: 690 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETYKLQRKETVKGI 869
LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLC +ETYKLQR+ET+KGI
Sbjct: 181 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRRETIKGI 240
Query: 870 QKREASNCATIRHFENKFAVETLIC 944
QKR A C TIRHFEN+FAVETLIC
Sbjct: 241 QKRSADVCVTIRHFENRFAVETLIC 265
>ref|NP_001075007.1| integral membrane protein 2C [Bos taurus].
Length = 271
Score = 222 bits (565), Expect = 5e-58
Identities = 115/278 (41%), Positives = 168/278 (60%), Gaps = 11/278 (3%)
Frame = +3
Query: 150 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTVAVDC--------KDPDEVVPVGQRRA 305
MVK++F A+A + K + S + P T A + + P + G
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASASASAPAPTPAAEILLTPAREERPPYQRYKKGGSVG 60
Query: 306 WCWCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPA 476
+ G+ +L G++ Y+Y+YF L D+ ++CG+ Y E ++ A
Sbjct: 61 GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQA 112
Query: 477 ARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPL 656
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI L
Sbjct: 113 HTRMELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIEL 172
Query: 657 NTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETY 836
NT+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC ++TY
Sbjct: 173 NTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTY 232
Query: 837 KLQRKETVKGIQKREASNCATIRHFENKFAVETLICSL 950
+L+R+ T + I KREA NC IRHFEN F VETLIC +
Sbjct: 233 RLRRRATRRRINKREAKNCNAIRHFENTFVVETLICGV 270
>ref|XP_002691878.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 206
Score = 115 bits (288), Expect = 7e-26
Identities = 72/177 (40%), Positives = 85/177 (48%)
Frame = -3
Query: 590 MHNVGRVAVRKLWDRHADELDPIFLEDLNIFXXXXXXXXXXXXXXXXXXXXXXXVLYSTI 411
M+++GRV + KLWDRHADE + +FL+DL+IF
Sbjct: 1 MNDIGRVTICKLWDRHADEFNLVFLKDLDIFLNGL------------------------- 35
Query: 410 VDVIWLKCKIFVQVCSS*NDTCKHKCQAKAHAPTPGSSLANWYHFIWVLAVHRDGVGGDD 231
VCS NDTC+HK Q+KAHAPTP SSLAN HFIWVL +H +GV +D
Sbjct: 36 -------------VCSPQNDTCEHKRQSKAHAPTPSSSLANRNHFIWVLKLHGNGVRRND 82
Query: 230 ERXXXXXXXXXXXXXXGQSRVERHLHHXXXXXXXXXXXXXXXXXRAPGYGCSLLGRA 60
ER GQSRVERHLHH RA G GC LL A
Sbjct: 83 ERLLAALGLVLLGLLLGQSRVERHLHH-----GAAWGALGGRWRRARGTGCGLLAAA 134
>ref|XP_002700958.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 206
Score = 115 bits (288), Expect = 7e-26
Identities = 72/177 (40%), Positives = 85/177 (48%)
Frame = -3
Query: 590 MHNVGRVAVRKLWDRHADELDPIFLEDLNIFXXXXXXXXXXXXXXXXXXXXXXXVLYSTI 411
M+++GRV + KLWDRHADE + +FL+DL+IF
Sbjct: 1 MNDIGRVTICKLWDRHADEFNLVFLKDLDIFLNGL------------------------- 35
Query: 410 VDVIWLKCKIFVQVCSS*NDTCKHKCQAKAHAPTPGSSLANWYHFIWVLAVHRDGVGGDD 231
VCS NDTC+HK Q+KAHAPTP SSLAN HFIWVL +H +GV +D
Sbjct: 36 -------------VCSPQNDTCEHKRQSKAHAPTPSSSLANRNHFIWVLKLHGNGVRRND 82
Query: 230 ERXXXXXXXXXXXXXXGQSRVERHLHHXXXXXXXXXXXXXXXXXRAPGYGCSLLGRA 60
ER GQSRVERHLHH RA G GC LL A
Sbjct: 83 ERLLAALGLVLLGLLLGQSRVERHLHH-----GAAWGALGGRWRRARGTGCGLLAAA 134
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,018,200
Number of extensions: 874431
Number of successful extensions: 1960
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1959
Number of HSP's successfully gapped: 4
Length of query: 372
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,240,222
Effective search space: 3816379496
Effective search space used: 3816379496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000645
(1117 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534119.2| PREDICTED: similar to integral membrane protein... 446 e-125
Alignment gi|XP_543282.2| PREDICTED: similar to Integral membrane protein... 216 3e-56
Alignment gi|XP_861283.1| PREDICTED: similar to integral membrane protein... 196 3e-50
Alignment gi|XP_861254.1| PREDICTED: similar to integral membrane protein... 145 7e-35
>ref|XP_534119.2| PREDICTED: similar to integral membrane protein 2B [Canis
familiaris].
Length = 258
Score = 446 bits (1146), Expect = e-125
Identities = 212/226 (93%), Positives = 220/226 (97%)
Frame = +3
Query: 267 DPDEVVPVGQRRAWCWCMCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVI 446
DPDEVVPVGQRRAWCWCMCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDV+
Sbjct: 32 DPDEVVPVGQRRAWCWCMCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVL 91
Query: 447 LNEPPANAPAARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDL 626
LNEP A+APAARYQTIEENIKIFEED VEFISVPVPEFADSDPANIVHDFNKKLTAYLDL
Sbjct: 92 LNEPSADAPAARYQTIEENIKIFEEDEVEFISVPVPEFADSDPANIVHDFNKKLTAYLDL 151
Query: 627 NLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYI 806
NLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGF+I
Sbjct: 152 NLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFFI 211
Query: 807 YRLCP*QETYKLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 944
YRLC +ETYKLQR+ET++GIQKRE SNC TIRHFENKFAVET+IC
Sbjct: 212 YRLCHDKETYKLQRRETIRGIQKREVSNCVTIRHFENKFAVETVIC 257
>ref|XP_543282.2| PREDICTED: similar to Integral membrane protein 2C (Transmembrane
protein BRI3) (Cerebral protein-14) isoform 2 [Canis
familiaris].
Length = 267
Score = 216 bits (550), Expect = 3e-56
Identities = 111/275 (40%), Positives = 168/275 (61%), Gaps = 8/275 (2%)
Frame = +3
Query: 150 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTVAVDCKDPDEVVPVGQRRAW-----CW 314
MVK++F A+A + K + + A P + + + P ++ C+
Sbjct: 1 MVKISFQPAVAGIKGDKADKAAAAAAAPAPAAEILLTPAREERAPPQRYKKGGSVGGVCY 60
Query: 315 CMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPAARY 485
+ G+ +L G++ Y+Y+YF L D+ ++CG+ Y E ++ A
Sbjct: 61 -LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQARTR 111
Query: 486 QTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTS 665
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI LNT+
Sbjct: 112 MELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTT 171
Query: 666 IVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETYKLQ 845
IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC ++TY+L+
Sbjct: 172 IVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTYRLR 231
Query: 846 RKETVKGIQKREASNCATIRHFENKFAVETLICSL 950
R+ T + I KR A +C IRHFEN F VETLIC +
Sbjct: 232 RRATRRRINKRGAKSCNAIRHFENTFVVETLICGV 266
>ref|XP_861283.1| PREDICTED: similar to integral membrane protein 2C isoform 3
isoform 4 [Canis familiaris].
Length = 220
Score = 196 bits (498), Expect = 3e-50
Identities = 93/187 (49%), Positives = 131/187 (70%)
Frame = +3
Query: 390 LQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIKIFEEDGVEFISVPVPEFADS 569
L D+ ++CG+ Y E ++ A +EE++KI+ E+ E I+VPVP+F
Sbjct: 41 LARDNFFHCGVLY--------EDSLSSQARTRMELEEDVKIYLEENYERINVPVPQFGGG 92
Query: 570 DPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIH 749
DPA+I+HDF + LTAY D++LDKCYVI LNT+IV+PPRN ELL+N+K GTYLPQ+Y+I
Sbjct: 93 DPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQ 152
Query: 750 EHMVITDRIENIDHLGFYIYRLCP*QETYKLQRKETVKGIQKREASNCATIRHFENKFAV 929
E MV+T+ + + + LG +IY LC ++TY+L+R+ T + I KR A +C IRHFEN F V
Sbjct: 153 EEMVVTEHVSDKEALGSFIYHLCSGKDTYRLRRRATRRRINKRGAKSCNAIRHFENTFVV 212
Query: 930 ETLICSL 950
ETLIC +
Sbjct: 213 ETLICGV 219
>ref|XP_861254.1| PREDICTED: similar to integral membrane protein 2C isoform 2
isoform 3 [Canis familiaris].
Length = 230
Score = 145 bits (366), Expect = 7e-35
Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 8/275 (2%)
Frame = +3
Query: 150 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTVAVDCKDPDEVVPVGQRRAW-----CW 314
MVK++F A+A + K + + A P + + + P ++ C+
Sbjct: 1 MVKISFQPAVAGIKGDKADKAAAAAAAPAPAAEILLTPAREERAPPQRYKKGGSVGGVCY 60
Query: 315 CMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPAARY 485
+ G+ +L G++ Y+Y+YF L D+ ++CG+ Y E ++ A
Sbjct: 61 -LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQARTR 111
Query: 486 QTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTS 665
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF ++
Sbjct: 112 MELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRR-------------------- 151
Query: 666 IVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETYKLQ 845
GTYLPQ+Y+I E MV+T+ + + + LG +IY LC ++TY+L+
Sbjct: 152 -----------------GTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTYRLR 194
Query: 846 RKETVKGIQKREASNCATIRHFENKFAVETLICSL 950
R+ T + I KR A +C IRHFEN F VETLIC +
Sbjct: 195 RRATRRRINKRGAKSCNAIRHFENTFVVETLICGV 229
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,374,643
Number of extensions: 861382
Number of successful extensions: 2051
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2048
Number of HSP's successfully gapped: 5
Length of query: 372
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,407,560
Effective search space: 4129226080
Effective search space used: 4129226080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000645
(1117 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_068839.1| integral membrane protein 2B [Homo sapiens]. 517 e-147
Alignment gi|NP_112188.1| integral membrane protein 2C isoform 1 [Homo sa... 214 1e-55
Alignment gi|NP_004858.1| integral membrane protein 2A isoform 1 [Homo sa... 201 8e-52
Alignment gi|NP_001012532.1| integral membrane protein 2C isoform 3 [Homo... 194 2e-49
Alignment gi|NP_001165052.1| integral membrane protein 2A isoform 2 [Homo... 169 6e-42
Alignment gi|NP_001012534.1| integral membrane protein 2C isoform 2 [Homo... 143 2e-34
>ref|NP_068839.1| integral membrane protein 2B [Homo sapiens].
Length = 266
Score = 517 bits (1332), Expect = e-147
Identities = 251/266 (94%), Positives = 258/266 (96%)
Frame = +3
Query: 150 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTVAVDCKDPDEVVPVGQRRAWCWCMCFG 329
MVKVTFNSALAQKEAKKDEPKSGEEALIIPPD VAVDCKDPD+VVPVGQRRAWCWCMCFG
Sbjct: 1 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDAVAVDCKDPDDVVPVGQRRAWCWCMCFG 60
Query: 330 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 509
LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEP A+APAA YQTIEENIK
Sbjct: 61 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPSADAPAALYQTIEENIK 120
Query: 510 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 689
IFEE+ VEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL
Sbjct: 121 IFEEEEVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 180
Query: 690 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETYKLQRKETVKGI 869
LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGF+IYRLC +ETYKLQR+ET+KGI
Sbjct: 181 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFFIYRLCHDKETYKLQRRETIKGI 240
Query: 870 QKREASNCATIRHFENKFAVETLICS 947
QKREASNC IRHFENKFAVETLICS
Sbjct: 241 QKREASNCFAIRHFENKFAVETLICS 266
>ref|NP_112188.1| integral membrane protein 2C isoform 1 [Homo sapiens].
Length = 267
Score = 214 bits (545), Expect = 1e-55
Identities = 114/278 (41%), Positives = 165/278 (59%), Gaps = 11/278 (3%)
Frame = +3
Query: 150 MVKVTFNSALA--------QKEAKKDEPKSGEEALIIPPDTVAVDCKDPDEVVPVGQRRA 305
MVK++F A+A + A P S E L+ P A + + P G
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTP----AREEQPPQHRSKRGGSVG 56
Query: 306 WCWCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPA 476
+ G+ +L G++ Y+Y+YF L D+ + CG+ Y E ++
Sbjct: 57 GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLY--------EDSLSSQV 108
Query: 477 ARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPL 656
+EE++KI+ ++ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI L
Sbjct: 109 RTQMELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIEL 168
Query: 657 NTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETY 836
NT+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC ++TY
Sbjct: 169 NTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTY 228
Query: 837 KLQRKETVKGIQKREASNCATIRHFENKFAVETLICSL 950
+L+R+ T + I KR A NC IRHFEN F VETLIC +
Sbjct: 229 RLRRRATRRRINKRGAKNCNAIRHFENTFVVETLICGV 266
>ref|NP_004858.1| integral membrane protein 2A isoform 1 [Homo sapiens].
Length = 263
Score = 201 bits (512), Expect = 8e-52
Identities = 113/272 (41%), Positives = 161/272 (59%), Gaps = 7/272 (2%)
Frame = +3
Query: 150 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTVAVDCKDPDEVVPVGQRRAW----CWC 317
MVK+ FN+ A +K+E + EAL+ TV E+ Q + C
Sbjct: 1 MVKIAFNTPTA---VQKEEARQDVEALL--SRTVRTQILTGKELRVATQEKEGSSGRCML 55
Query: 318 MCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAA---RYQ 488
GL+F+LAG+I+GGA +YKYF P Y G D +E PAN+ +
Sbjct: 56 TLLGLSFILAGLIVGGACIYKYF--MPKSTIYRGEMCFFD----SEDPANSLRGGEPNFL 109
Query: 489 TIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSI 668
+ E I E+D + I VPVP F+DSDPA I+HDF K +TAYLDL L CY++PLNTSI
Sbjct: 110 PVTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSI 169
Query: 669 VMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETYKLQR 848
VMPP+NL+EL + +G YLPQ+Y++ E +V + I ++ +LG +IY+LC +++++L+R
Sbjct: 170 VMPPKNLVELFGKLASGRYLPQTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRR 229
Query: 849 KETVKGIQKREASNCATIRHFENKFAVETLIC 944
++ + G KR C IRHF N+F VET IC
Sbjct: 230 RDLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 261
>ref|NP_001012532.1| integral membrane protein 2C isoform 3 [Homo sapiens].
Length = 220
Score = 194 bits (492), Expect = 2e-49
Identities = 92/187 (49%), Positives = 129/187 (68%)
Frame = +3
Query: 390 LQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIKIFEEDGVEFISVPVPEFADS 569
L D+ + CG+ Y E ++ +EE++KI+ ++ E I+VPVP+F
Sbjct: 41 LARDNFFRCGVLY--------EDSLSSQVRTQMELEEDVKIYLDENYERINVPVPQFGGG 92
Query: 570 DPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIH 749
DPA+I+HDF + LTAY D++LDKCYVI LNT+IV+PPRN ELL+N+K GTYLPQ+Y+I
Sbjct: 93 DPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQ 152
Query: 750 EHMVITDRIENIDHLGFYIYRLCP*QETYKLQRKETVKGIQKREASNCATIRHFENKFAV 929
E MV+T+ + + + LG +IY LC ++TY+L+R+ T + I KR A NC IRHFEN F V
Sbjct: 153 EEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRINKRGAKNCNAIRHFENTFVV 212
Query: 930 ETLICSL 950
ETLIC +
Sbjct: 213 ETLICGV 219
>ref|NP_001165052.1| integral membrane protein 2A isoform 2 [Homo sapiens].
Length = 219
Score = 169 bits (427), Expect = 6e-42
Identities = 79/168 (47%), Positives = 114/168 (67%), Gaps = 3/168 (1%)
Frame = +3
Query: 450 NEPPANAPAA---RYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYL 620
+E PAN+ + + E I E+D + I VPVP F+DSDPA I+HDF K +TAYL
Sbjct: 50 SEDPANSLRGGEPNFLPVTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYL 109
Query: 621 DLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGF 800
DL L CY++PLNTSIVMPP+NL+EL + +G YLPQ+Y++ E +V + I ++ +LG
Sbjct: 110 DLLLGNCYLMPLNTSIVMPPKNLVELFGKLASGRYLPQTYVVREDLVAVEEIRDVSNLGI 169
Query: 801 YIYRLCP*QETYKLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 944
+IY+LC +++++L+R++ + G KR C IRHF N+F VET IC
Sbjct: 170 FIYQLCNNRKSFRLRRRDLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 217
>ref|NP_001012534.1| integral membrane protein 2C isoform 2 [Homo sapiens].
Length = 230
Score = 143 bits (361), Expect = 2e-34
Identities = 88/278 (31%), Positives = 134/278 (48%), Gaps = 11/278 (3%)
Frame = +3
Query: 150 MVKVTFNSALA--------QKEAKKDEPKSGEEALIIPPDTVAVDCKDPDEVVPVGQRRA 305
MVK++F A+A + A P S E L+ P A + + P G
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTP----AREEQPPQHRSKRGGSVG 56
Query: 306 WCWCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPA 476
+ G+ +L G++ Y+Y+YF L D+ + CG+ Y E ++
Sbjct: 57 GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLY--------EDSLSSQV 108
Query: 477 ARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPL 656
+EE++KI+ ++ E I+VPVP+F DPA+I+HDF ++
Sbjct: 109 RTQMELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRR----------------- 151
Query: 657 NTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETY 836
GTYLPQ+Y+I E MV+T+ + + + LG +IY LC ++TY
Sbjct: 152 --------------------GTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTY 191
Query: 837 KLQRKETVKGIQKREASNCATIRHFENKFAVETLICSL 950
+L+R+ T + I KR A NC IRHFEN F VETLIC +
Sbjct: 192 RLRRRATRRRINKRGAKNCNAIRHFENTFVVETLICGV 229
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,763,112
Number of extensions: 851949
Number of successful extensions: 2022
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2019
Number of HSP's successfully gapped: 7
Length of query: 372
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,868,908
Effective search space: 3984867344
Effective search space used: 3984867344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000645
(1117 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032436.1| integral membrane protein 2B [Mus musculus]. 513 e-145
Alignment gi|NP_071862.2| integral membrane protein 2C [Mus musculus]. 211 6e-55
Alignment gi|NP_032435.2| integral membrane protein 2A [Mus musculus]. 199 2e-51
>ref|NP_032436.1| integral membrane protein 2B [Mus musculus].
Length = 266
Score = 513 bits (1320), Expect = e-145
Identities = 246/266 (92%), Positives = 258/266 (96%)
Frame = +3
Query: 150 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTVAVDCKDPDEVVPVGQRRAWCWCMCFG 329
MVKVTFNSALAQKEAKKDEPKS EEALI+PPD VAVDCKDP +VVPVGQRRAWCWCMCFG
Sbjct: 1 MVKVTFNSALAQKEAKKDEPKSSEEALIVPPDAVAVDCKDPGDVVPVGQRRAWCWCMCFG 60
Query: 330 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 509
LAFMLAGVILGGAYLYKYFALQPDDVYYCG+KYIKDDVILNEP A+APAARYQTIEENIK
Sbjct: 61 LAFMLAGVILGGAYLYKYFALQPDDVYYCGLKYIKDDVILNEPSADAPAARYQTIEENIK 120
Query: 510 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 689
IFEED VEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPP+NL
Sbjct: 121 IFEEDAVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPKNL 180
Query: 690 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETYKLQRKETVKGI 869
LELLINIKAGTYLPQSYLIHEHMVITDRIEN+D+LGF+IYRLC +ETYKLQR+ET++GI
Sbjct: 181 LELLINIKAGTYLPQSYLIHEHMVITDRIENVDNLGFFIYRLCHDKETYKLQRRETIRGI 240
Query: 870 QKREASNCATIRHFENKFAVETLICS 947
QKREASNC TIRHFENKFAVETLICS
Sbjct: 241 QKREASNCFTIRHFENKFAVETLICS 266
>ref|NP_071862.2| integral membrane protein 2C [Mus musculus].
Length = 269
Score = 211 bits (538), Expect = 6e-55
Identities = 114/276 (41%), Positives = 166/276 (60%), Gaps = 9/276 (3%)
Frame = +3
Query: 150 MVKVTFNSALAQKEAKKDEPK--SGEEALIIPPD----TVAVDCKDPDEVVPVGQRRAWC 311
MVK++F A+A +A K + SG + P T A + + P G
Sbjct: 1 MVKISFQPAVAGIKADKADKAAASGPASASAPAAEILLTPAREERPPRHRSRKGGSVGGV 60
Query: 312 WCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPAAR 482
+ G+ +L G++ Y+Y+YF L D+ ++CG+ Y E ++
Sbjct: 61 CYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQIRT 112
Query: 483 YQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNT 662
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI LNT
Sbjct: 113 RLELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNT 172
Query: 663 SIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETYKL 842
+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC ++TY+L
Sbjct: 173 TIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVRDKEALGSFIYHLCNGKDTYRL 232
Query: 843 QRKETVKGIQKREASNCATIRHFENKFAVETLICSL 950
+R+ T + I KR NC IRHFEN F VETLIC +
Sbjct: 233 RRRSTRRRINKRGGKNCNAIRHFENTFVVETLICGV 268
>ref|NP_032435.2| integral membrane protein 2A [Mus musculus].
Length = 263
Score = 199 bits (507), Expect = 2e-51
Identities = 108/269 (40%), Positives = 161/269 (59%), Gaps = 4/269 (1%)
Frame = +3
Query: 150 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTVAVDCKDPDEVVPVGQRR----AWCWC 317
MVK+ FN+ A +K+E + EAL+ TV E+ V Q + C
Sbjct: 1 MVKIAFNTPTA---VQKEEARQDVEALV--SRTVRAQILTGKELRVVPQEKDGSSGRCML 55
Query: 318 MCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIE 497
GL+F+LAG+I+GGA +YKYF + +Y+ + + + +N P P + +
Sbjct: 56 TLLGLSFILAGLIVGGACIYKYF-MPKSTIYHGEMCFFDSEDPVNSIPGGEPY--FLPVT 112
Query: 498 ENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMP 677
E I E+D + I VPVP F+DSDPA I+HDF K +TAYLDL L CY++PLNTSIVM
Sbjct: 113 EEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSIVMT 172
Query: 678 PRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETYKLQRKET 857
P+NL+EL + +G YLP +Y++ E +V + I ++ +LG +IY+LC +++++L+R++
Sbjct: 173 PKNLVELFGKLASGKYLPHTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRRRDL 232
Query: 858 VKGIQKREASNCATIRHFENKFAVETLIC 944
+ G KR C IRHF N+F VET IC
Sbjct: 233 LLGFNKRAIDKCWKIRHFPNEFIVETKIC 261
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,371,263
Number of extensions: 730345
Number of successful extensions: 1713
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1711
Number of HSP's successfully gapped: 3
Length of query: 372
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,523,851
Effective search space: 3368915919
Effective search space used: 3368915919
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000645
(1117 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035834.1| integral membrane protein 2B [Sus scrofa]. 535 e-152
Alignment gi|NP_001116603.1| integral membrane protein 2C [Sus scrofa]. 218 5e-57
Alignment gi|NP_001026968.1| integral membrane protein 2A [Sus scrofa]. 194 7e-50
>ref|NP_001035834.1| integral membrane protein 2B [Sus scrofa].
Length = 266
Score = 535 bits (1379), Expect = e-152
Identities = 261/266 (98%), Positives = 262/266 (98%)
Frame = +3
Query: 150 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTVAVDCKDPDEVVPVGQRRAWCWCMCFG 329
MVKVTFNSALAQKEAKK EPKSGEEALIIPPDT AVDCKDPDEVVPVGQRRAWCWCMCFG
Sbjct: 1 MVKVTFNSALAQKEAKKXEPKSGEEALIIPPDTXAVDCKDPDEVVPVGQRRAWCWCMCFG 60
Query: 330 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 509
LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK
Sbjct: 61 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 120
Query: 510 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 689
IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL
Sbjct: 121 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 180
Query: 690 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETYKLQRKETVKGI 869
LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLC +ETYKLQRKETVKGI
Sbjct: 181 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGI 240
Query: 870 QKREASNCATIRHFENKFAVETLICS 947
QKREASNCATIRHFENKFAVETLICS
Sbjct: 241 QKREASNCATIRHFENKFAVETLICS 266
>ref|NP_001116603.1| integral membrane protein 2C [Sus scrofa].
Length = 269
Score = 218 bits (555), Expect = 5e-57
Identities = 114/276 (41%), Positives = 166/276 (60%), Gaps = 9/276 (3%)
Frame = +3
Query: 150 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPD------TVAVDCKDPDEVVPVGQRRAWC 311
MVK++F A+A + K + S + P T A + + P G
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASASAPAPAPAAEILLTPAREERPPHHRYKKGSSVGGV 60
Query: 312 WCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPAAR 482
+ G+ +L G++ Y+Y+YF L D+ ++CG+ Y E ++ A
Sbjct: 61 CYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQART 112
Query: 483 YQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNT 662
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI LNT
Sbjct: 113 RMELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNT 172
Query: 663 SIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETYKL 842
+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC ++TY+L
Sbjct: 173 TIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRL 232
Query: 843 QRKETVKGIQKREASNCATIRHFENKFAVETLICSL 950
+R+ T + I KR A NC IRHFEN F VETLIC +
Sbjct: 233 RRRATRRRINKRGAKNCNAIRHFENTFVVETLICGV 268
>ref|NP_001026968.1| integral membrane protein 2A [Sus scrofa].
Length = 254
Score = 194 bits (493), Expect = 7e-50
Identities = 110/268 (41%), Positives = 157/268 (58%), Gaps = 3/268 (1%)
Frame = +3
Query: 150 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTVAVDCKDPDEVVPVGQRRAWCWCMCFG 329
MVK+ FN+ A +K+E + EAL+ + + V K+ + C G
Sbjct: 1 MVKIAFNTPAA---VQKEEVQQDVEALLSHTE-LQVATKEKEGF------SGRCMLTLVG 50
Query: 330 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAAR---YQTIEE 500
L+F+LAG+I+GGA +YKYF P Y G D PAN+ + + E
Sbjct: 51 LSFILAGLIVGGACIYKYF--MPKSTIYHGEMCFFDSA----DPANSLQGGEPYFLPVME 104
Query: 501 NIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPP 680
I E+D + I VPVP F+DSDPA I+HDF K +TAYLDL L CY++PLNTSIVMPP
Sbjct: 105 EADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSIVMPP 164
Query: 681 RNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCP*QETYKLQRKETV 860
+ LLEL + G YLP +Y++HE +V + I ++ +LG +IY+LC +++++L+R++ +
Sbjct: 165 KYLLELFGKLARGKYLPHTYVVHEDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRRRDLL 224
Query: 861 KGIQKREASNCATIRHFENKFAVETLIC 944
G KR C IRHF N+F VET IC
Sbjct: 225 LGFNKRAIDKCWKIRHFPNEFIVETKIC 252
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,539,762
Number of extensions: 617553
Number of successful extensions: 1232
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1230
Number of HSP's successfully gapped: 3
Length of query: 372
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,854,232
Effective search space: 2408351104
Effective search space used: 2408351104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000645
(1117 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 410 e-112
Sscrofa_Chr18 103 2e-19
>Sscrofa_Chr11
|| Length = 87690581
Score = 410 bits (207), Expect = e-112
Identities = 207/207 (100%)
Strand = Plus / Minus
Query: 396 ccagatgacgtctactattgtggaataaagtacatcaaggatgatgtcatcttaaatgag 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19807475 ccagatgacgtctactattgtggaataaagtacatcaaggatgatgtcatcttaaatgag 19807416
Query: 456 cctcctgcgaacgcccctgccgcccgctaccagaccatcgaggaaaatattaagatcttc 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19807415 cctcctgcgaacgcccctgccgcccgctaccagaccatcgaggaaaatattaagatcttc 19807356
Query: 516 gaggaagatggggtcgagttcatcagcgtgcctgtcccagagtttgcggacagcgaccct 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19807355 gaggaagatggggtcgagttcatcagcgtgcctgtcccagagtttgcggacagcgaccct 19807296
Query: 576 gccaacattgtgcatgactttaacaag 602
|||||||||||||||||||||||||||
Sbjct: 19807295 gccaacattgtgcatgactttaacaag 19807269
Score = 398 bits (201), Expect = e-108
Identities = 245/257 (95%), Gaps = 2/257 (0%)
Strand = Plus / Minus
Query: 863 aggtattcagaaacgtgaagccagcaattgtgctacgattcggcattttgaaaacaaatt 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803390 aggtattcagaaacgtgaagccagcaattgtgctacgattcggcattttgaaaacaaatt 19803331
Query: 923 tgccgtcgaaactttaatttgttctttaacagttcagaaaa-cattatggaggaaaactt 981
|||||||||||||||||||||||||| |||||| |||||| |||||||||| |||||||
Sbjct: 19803330 tgccgtcgaaactttaatttgttcttgaacagtcaagaaaaacattatggagaaaaactt 19803271
Query: 982 aatacccagcataataaccccaccctttggaatttgtgcagtgattattttttaaaatct 1041
||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 19803270 aatacacagcataataaccccaccctttgtattttgtgcagtgattattttttaaaatct 19803211
Query: 1042 tctttcatgtaagtagcaaacagggcttcactatcttttcatccca-tgattccaataaa 1100
||||||||||||||||||||||||||||||||||||||||||| || |||||| | ||||
Sbjct: 19803210 tctttcatgtaagtagcaaacagggcttcactatcttttcatctcattgattcaattaaa 19803151
Query: 1101 accattaccttttaaaa 1117
|||||||||||||||||
Sbjct: 19803150 accattaccttttaaaa 19803134
Score = 280 bits (141), Expect = 2e-72
Identities = 155/157 (98%), Gaps = 2/157 (1%)
Strand = Plus / Minus
Query: 712 aggctgggacctacctgcctcagtcctatttgatccatgaacacatggtcatcactgatc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19805419 aggctgggacctacctgcctcagtcctatttgatccatgaacacatggtcatcactgatc 19805360
Query: 772 gcattgaaaacatcgatcacctgggcttctatatttatcgactgtgcccatgac-aggaa 830
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 19805359 gcattgaaaacatcgatcacctgggcttctatatttatcgactgtg-ccatgacaaggaa 19805301
Query: 831 acttacaaactgcagcgcaaagaaaccgttaaaggta 867
|||||||||||||||||||||||||||||||||||||
Sbjct: 19805300 acttacaaactgcagcgcaaagaaaccgttaaaggta 19805264
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 265 aggacccagatgaagtggtaccagttggccaaagaagagcctggtgttggtgcatgtgct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19851903 aggacccagatgaagtggtaccagttggccaaagaagagcctggtgttggtgcatgtgct 19851844
Query: 325 ttggcctggcatttatgcttgcaggtgtcattctaggaggagcatacctgtacaaatatt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19851843 ttggcctggcatttatgcttgcaggtgtcattctaggaggagcatacctgtacaaatatt 19851784
Query: 385 ttgcacttcaa 395
|||||||||||
Sbjct: 19851783 ttgcacttcaa 19851773
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 601 agaaactcacggcttatttagatcttaacctggataagtgctatgtgattcctctgaaca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19806019 agaaactcacggcttatttagatcttaacctggataagtgctatgtgattcctctgaaca 19805960
Query: 661 cttccattgttatgccacccagaaacctactggagttacttattaacataaagg 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19805959 cttccattgttatgccacccagaaacctactggagttacttattaacataaagg 19805906
Score = 190 bits (96), Expect = 1e-45
Identities = 99/100 (99%)
Strand = Plus / Minus
Query: 1 gtagccacctctgtcgctgcggagctgcttgtctccggttgctgctgagccgcgttcgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874763 gtagccacctctgtcgctgcggagctgcttgtctccggttgctgctgagccgcgttcgga 19874704
Query: 61 gccctgccgaggaggctgcagccgtagccaggagcccgca 100
|||||||||||||||||||||||||||| |||||||||||
Sbjct: 19874703 gccctgccgaggaggctgcagccgtagctaggagcccgca 19874664
Score = 184 bits (93), Expect = 7e-44
Identities = 110/118 (93%)
Strand = Plus / Minus
Query: 150 atggtgaaggtgacgttcaactcggctctggcccagaaggaggccaagaaggacgagccc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874614 atggtgaaggtgacgttcaactcggctctggcccagaaggaggccaagaaggacgagccc 19874555
Query: 210 aagagcggagaggaggcgctcatcatnnnnnnngacaccgtcgcggtggactgcaagg 267
|||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 19874554 aagagcggagaggaggcgctcatcatcccccccgacaccatcgcggtggactgcaagg 19874497
>Sscrofa_Chr18
|| Length = 61220071
Score = 103 bits (52), Expect = 2e-19
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1043 ctttcatgtaagtagcaaacagggcttcactatcttttcatccca-tgattccaataaaa 1101
||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||
Sbjct: 9458529 ctttcatgtaagtagcaaacagggcttcactatcttttcatcccattaattcaattaaaa 9458588
Query: 1102 ccattaccttttaaaa 1117
||| ||||||||||||
Sbjct: 9458589 ccactaccttttaaaa 9458604
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,015,209
Number of extensions: 251
Number of successful extensions: 251
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 8
Length of query: 1117
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1096
Effective length of database: 2,808,413,156
Effective search space: 3078020818976
Effective search space used: 3078020818976
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)