Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000657
(1259 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776325.1| CD9 antigen [Bos taurus]. 347 2e-95
Alignment gi|NP_001030271.1| CD81 antigen [Bos taurus]. 176 5e-44
Alignment gi|NP_001029829.1| tetraspanin-2 [Bos taurus]. 151 1e-36
Alignment gi|NP_001074389.1| tetraspanin-18 [Bos taurus]. 94 2e-19
Alignment gi|NP_001073097.1| tetraspanin-8 [Bos taurus]. 91 2e-18
Alignment gi|NP_001030424.1| CD151 antigen [Bos taurus]. 88 1e-17
Alignment gi|NP_001091459.1| CD82 molecule [Bos taurus]. 84 2e-16
Alignment gi|XP_002701454.1| PREDICTED: CD82 molecule-like isoform 2 [Bos... 84 2e-16
Alignment gi|XP_002701453.1| PREDICTED: CD82 molecule-like isoform 1 [Bos... 84 2e-16
Alignment gi|NP_001039913.1| tetraspanin-14 [Bos taurus]. 81 2e-15
>ref|NP_776325.1| CD9 antigen [Bos taurus].
Length = 226
Score = 347 bits (889), Expect = 2e-95
Identities = 167/226 (73%), Positives = 184/226 (81%)
Frame = +2
Query: 122 MPVKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYI 301
MPVKGGTKCIKYLLFGFNFIFWLAGIAVL++GLWLRFDSQTKSIFEQENN+SSFYTGVYI
Sbjct: 1 MPVKGGTKCIKYLLFGFNFIFWLAGIAVLSVGLWLRFDSQTKSIFEQENNDSSFYTGVYI 60
Query: 302 LIGAGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQ 481
LIGAGALMM+VGFLGCCGAVQESQCM VIFAIE+AAAIWGYSHK++VIKEVQ
Sbjct: 61 LIGAGALMMLVGFLGCCGAVQESQCMLGLFFSFLLVIFAIEVAAAIWGYSHKEEVIKEVQ 120
Query: 482 DFYRDTYNKLKGKDDPQRETLKAIHYALDCCGLMGGVEQLLADICPQKDVLSSLPMKPCP 661
FY DTYNKLK KD+PQRETLKAIH ALDCCGL G EQ L D CP K+++ SL +PCP
Sbjct: 121 KFYEDTYNKLKNKDEPQRETLKAIHIALDCCGLTGVPEQFLTDTCPPKNLIDSLKTRPCP 180
Query: 662 EAIKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAIRRSREMV 799
EAI E+F++KFH FSMILCCAIRR+R+MV
Sbjct: 181 EAIDEIFRSKFHIIGAVGIGIAVVMIFGMVFSMILCCAIRRNRDMV 226
>ref|NP_001030271.1| CD81 antigen [Bos taurus].
Length = 236
Score = 176 bits (445), Expect = 5e-44
Identities = 96/233 (41%), Positives = 132/233 (56%), Gaps = 11/233 (4%)
Frame = +2
Query: 122 MPVKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNN----SSFYT 289
M V+G TKCIKYLLF FNF+FWLAG +L + LWLR D QT ++ E + ++FY
Sbjct: 1 MGVEGCTKCIKYLLFVFNFVFWLAGGVILGVALWLRHDPQTTNLLYLELGDRPAPNTFYV 60
Query: 290 GVYILIGAGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVI 469
G+YILI GA+MM VGFLGC GA+QESQC+ ++FA E+AA IWG+ +KDQ+
Sbjct: 61 GIYILIAVGAVMMFVGFLGCYGAIQESQCLLGTFFTCLVILFACEVAAGIWGFVNKDQIA 120
Query: 470 KEVQDFYRDTYNKLKGKDDPQ--RETLKAIHYALDCCG---LMGGVEQLLAD-ICPQK-D 628
K+V+ FY + DD + +K H L+CCG LM +L + +CP +
Sbjct: 121 KDVKQFYDQALQQAIVDDDANNAKAVVKTFHETLNCCGSNTLMTLTTSVLKNSLCPSSGN 180
Query: 629 VLSSLPMKPCPEAIKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAIRRS 787
V+++L + C I E+F K + SM+LCC IR S
Sbjct: 181 VITNLFKEDCHGKIDELFSGKLYLIGIAAIVVAVIMIFEMILSMVLCCGIRNS 233
>ref|NP_001029829.1| tetraspanin-2 [Bos taurus].
Length = 232
Score = 151 bits (381), Expect = 1e-36
Identities = 76/187 (40%), Positives = 101/187 (54%)
Frame = +2
Query: 131 KGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIG 310
+GG +CIKYLL GFN +FWLAG AV+A GLW RF K ++ + FY G+Y+L+G
Sbjct: 5 RGGLRCIKYLLLGFNLLFWLAGSAVIAFGLWFRFGGSMKDFSSEDKSPEYFYMGLYVLVG 64
Query: 311 AGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFY 490
AGALMM VGF GCCGA +ESQC+ VIFA EI ++ + KD I+ VQ Y
Sbjct: 65 AGALMMAVGFFGCCGATRESQCVLGSFFTCLLVIFAAEITTGVFAFIGKDVAIRHVQTMY 124
Query: 491 RDTYNKLKGKDDPQRETLKAIHYALDCCGLMGGVEQLLADICPQKDVLSSLPMKPCPEAI 670
+ YN + TL H CCG + + CP++ L K C + I
Sbjct: 125 EEAYNDYLRDKEKGNGTLITFHSTFQCCGKES--PEQVQPTCPKE----LLGHKNCIDEI 178
Query: 671 KEVFQNK 691
+ + K
Sbjct: 179 ESIISVK 185
>ref|NP_001074389.1| tetraspanin-18 [Bos taurus].
Length = 249
Score = 94.4 bits (233), Expect = 2e-19
Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 2/149 (1%)
Frame = +2
Query: 146 CIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALM 325
C+KYL+F FNF +L G +L IG+W+ D E N TG YIL+ G L+
Sbjct: 8 CMKYLMFVFNFFIFLGGACLLGIGIWVMVDPT--GFREIVAANPLLITGAYILLAMGGLL 65
Query: 326 MVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYN 505
++GFLGCCGAV+E++C+ +IF E++AAI + + + +E F ++
Sbjct: 66 FLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRGNLTREF--FTKELTK 123
Query: 506 KLKGKDDPQ--RETLKAIHYALDCCGLMG 586
+G +D T ++ CCG+ G
Sbjct: 124 HYQGSNDTDVFSATWNSVMITFGCCGVNG 152
>ref|NP_001073097.1| tetraspanin-8 [Bos taurus].
Length = 238
Score = 90.9 bits (224), Expect = 2e-18
Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 18/235 (7%)
Frame = +2
Query: 134 GGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGA 313
G CIK +F FNF+FWL G +L++ + +R + I + + + + V ILI
Sbjct: 3 GVNVCIKCSMFIFNFVFWLCGAIILSVAISIRAGKIGQEILAPGDADLNLFIAVNILIFV 62
Query: 314 GALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYR 493
GA++M++GFLGCCGA++E+Q M +I +++AA I + K + + +
Sbjct: 63 GAVIMILGFLGCCGAMKENQFMMILFFVGLLMILLLQVAAGIVATTRKSKTEQALNKTLL 122
Query: 494 DTYNKLKGKDDPQRETLKA---IHYALDCCGLMGGVEQLLADI--------CPQKDVLS- 637
L D+ +R KA + L CCGL+ G ++ CP + S
Sbjct: 123 INARLLSSTDENERVFQKAFSELQEELKCCGLVNGASDWGSNFQHYYRTCECPSESDSSC 182
Query: 638 ------SLPMKPCPEAIKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAIRR 784
++ + C +I ++F + FS++L C +R+
Sbjct: 183 TKYSGKTIYKQSCFASISQMFSKRLFIVLALAFGLAAIEVLGLIFSIVLYCQMRK 237
>ref|NP_001030424.1| CD151 antigen [Bos taurus].
Length = 253
Score = 88.2 bits (217), Expect = 1e-17
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Frame = +2
Query: 137 GTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAG 316
GT C+KYLLF FN FWLAG+AV+A+G+W KS + + ++ YIL+ AG
Sbjct: 12 GTVCLKYLLFTFNCCFWLAGLAVMAVGIW---TLALKSDYISLLASGTYLATAYILVVAG 68
Query: 317 ALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRD 496
++MV G LGCC +E + + +IF +EI A Y + Q+ E+++ +D
Sbjct: 69 IVVMVTGALGCCATFKERRNLLRLYFGLLLIIFLLEIIAGALAYIYYQQLNAELKENLKD 128
Query: 497 TYNKLKGKDDPQRET--LKAIHYALDCCG 577
T + + + T + + CCG
Sbjct: 129 TMTRRYHQPGHEGVTSAVDKLQQEFHCCG 157
>ref|NP_001091459.1| CD82 molecule [Bos taurus].
Length = 268
Score = 84.3 bits (207), Expect = 2e-16
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 4/151 (2%)
Frame = +2
Query: 137 GTKCIK---YLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILI 307
G+ CIK Y LF FN +F++ G +L G+W+ D + I + +++SF Y+ I
Sbjct: 2 GSACIKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNS-FISILQTSSTSFKVAAYVFI 60
Query: 308 GAGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDF 487
GAL M++GFLGC GAV+E +C+ +I ++ A ++ Y + Q+ +E+
Sbjct: 61 SVGALTMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSI 120
Query: 488 Y-RDTYNKLKGKDDPQRETLKAIHYALDCCG 577
+ +N G D +E + + CCG
Sbjct: 121 VTKLIHNYTDGSGDNLQEAWDYVQAQVKCCG 151
>ref|XP_002701454.1| PREDICTED: CD82 molecule-like isoform 2 [Bos taurus].
Length = 268
Score = 84.3 bits (207), Expect = 2e-16
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 4/151 (2%)
Frame = +2
Query: 137 GTKCIK---YLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILI 307
G+ CIK Y LF FN +F++ G +L G+W+ D + I + +++SF Y+ I
Sbjct: 2 GSACIKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNS-FISILQTSSTSFKVAAYVFI 60
Query: 308 GAGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDF 487
GAL M++GFLGC GAV+E +C+ +I ++ A ++ Y + Q+ +E+
Sbjct: 61 SVGALTMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSI 120
Query: 488 Y-RDTYNKLKGKDDPQRETLKAIHYALDCCG 577
+ +N G D +E + + CCG
Sbjct: 121 VTKLIHNYTDGSGDNLQEAWDYVQAQVKCCG 151
>ref|XP_002701453.1| PREDICTED: CD82 molecule-like isoform 1 [Bos taurus].
Length = 268
Score = 84.3 bits (207), Expect = 2e-16
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 4/151 (2%)
Frame = +2
Query: 137 GTKCIK---YLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILI 307
G+ CIK Y LF FN +F++ G +L G+W+ D + I + +++SF Y+ I
Sbjct: 2 GSACIKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNS-FISILQTSSTSFKVAAYVFI 60
Query: 308 GAGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDF 487
GAL M++GFLGC GAV+E +C+ +I ++ A ++ Y + Q+ +E+
Sbjct: 61 SVGALTMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSI 120
Query: 488 Y-RDTYNKLKGKDDPQRETLKAIHYALDCCG 577
+ +N G D +E + + CCG
Sbjct: 121 VTKLIHNYTDGSGDNLQEAWDYVQAQVKCCG 151
>ref|NP_001039913.1| tetraspanin-14 [Bos taurus].
Length = 270
Score = 80.9 bits (198), Expect = 2e-15
Identities = 43/145 (29%), Positives = 70/145 (48%)
Frame = +2
Query: 152 KYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALMMV 331
KYLLF +N +FWLAG+ L +GLW + S + V +L+ G +M
Sbjct: 16 KYLLFSYNIVFWLAGVVFLGVGLWAWSEKGVLSDLTKVTRMHGIDPVVLVLM-VGVVMFT 74
Query: 332 VGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYNKL 511
+GF GC GA++E+ C+ +IF +E+A A+ + +D V ++F+
Sbjct: 75 LGFAGCVGALRENICLLNFFCSTIVLIFFLELAVAVLAFLFQDWVRDRFREFFESNIRSY 134
Query: 512 KGKDDPQRETLKAIHYALDCCGLMG 586
+ D Q + ++ A CCG G
Sbjct: 135 RDDIDLQ-NLIDSLQKANQCCGAYG 158
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,575,154
Number of extensions: 1079487
Number of successful extensions: 4827
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 4771
Number of HSP's successfully gapped: 32
Length of query: 419
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,207,134
Effective search space: 4461040076
Effective search space used: 4461040076
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000657
(1259 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854486.1| PREDICTED: similar to CD9 antigen (p24) (Leukoc... 319 3e-87
Alignment gi|XP_848759.1| PREDICTED: similar to tetraspan 2 [Canis famili... 165 1e-40
Alignment gi|XP_854381.1| PREDICTED: similar to CD81 antigen (26 kDa cell... 138 1e-32
Alignment gi|XP_531678.2| PREDICTED: similar to transmembrane 4 superfami... 118 1e-26
Alignment gi|XP_854130.1| PREDICTED: similar to Tetraspanin-18 (Tspan-18)... 96 9e-20
Alignment gi|XP_862412.1| PREDICTED: similar to CD151 antigen isoform 3 [... 94 4e-19
Alignment gi|XP_533198.1| PREDICTED: similar to CD151 antigen isoform 1 [... 94 4e-19
Alignment gi|XP_854142.1| PREDICTED: similar to CD82 antigen (Inducible m... 85 2e-16
Alignment gi|XP_853199.1| PREDICTED: similar to tetraspanin 14 [Canis fam... 80 3e-15
Alignment gi|XP_850718.1| PREDICTED: similar to Tetraspanin-5 (Tspan-5) (... 79 7e-15
>ref|XP_854486.1| PREDICTED: similar to CD9 antigen (p24) (Leukocyte antigen MIC3)
(Motility-related protein) (MRP-1) (Tetraspanin-29)
(Tspan-29) [Canis familiaris].
Length = 213
Score = 319 bits (818), Expect = 3e-87
Identities = 156/204 (76%), Positives = 171/204 (83%)
Frame = +2
Query: 188 LAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALMMVVGFLGCCGAVQE 367
LAGIAVLA+GLWLRFDSQTKSIFEQ+ SSFYTGVYILIGAGALMM+VGFLGCCGAVQE
Sbjct: 10 LAGIAVLAVGLWLRFDSQTKSIFEQDTQPSSFYTGVYILIGAGALMMLVGFLGCCGAVQE 69
Query: 368 SQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYNKLKGKDDPQRETLK 547
SQCM VIFAIEIAAAIWGYSHKD+VIKEVQ+FY+DTY+KLK KD+PQR+TLK
Sbjct: 70 SQCMLGLFFGFLLVIFAIEIAAAIWGYSHKDEVIKEVQEFYKDTYSKLKSKDEPQRDTLK 129
Query: 548 AIHYALDCCGLMGGVEQLLADICPQKDVLSSLPMKPCPEAIKEVFQNKFHXXXXXXXXXX 727
AIHYAL+CCGL+GGVEQ ++DICPQKDVLSS+ +KPCPEAIKEVFQNKFH
Sbjct: 130 AIHYALNCCGLVGGVEQFISDICPQKDVLSSITVKPCPEAIKEVFQNKFHIIGAVGIGIA 189
Query: 728 XXXXXXXXFSMILCCAIRRSREMV 799
FSMILCCAIRRSREMV
Sbjct: 190 VVMIFGMIFSMILCCAIRRSREMV 213
>ref|XP_848759.1| PREDICTED: similar to tetraspan 2 [Canis familiaris].
Length = 221
Score = 165 bits (417), Expect = 1e-40
Identities = 84/223 (37%), Positives = 115/223 (51%)
Frame = +2
Query: 131 KGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIG 310
+GG +CIKYLL GFN +FWLAG AV+ GLW RF K ++ + FY G+Y+L+G
Sbjct: 5 RGGLRCIKYLLLGFNLLFWLAGSAVIGFGLWFRFGGTMKGFSSEDKSPEYFYMGLYVLVG 64
Query: 311 AGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFY 490
AGALMM VGF GCCGA++ESQC+ VIFA E+ ++ + K I+ VQ Y
Sbjct: 65 AGALMMAVGFFGCCGAMRESQCVLGSFFTCLLVIFAAEVTTGVFAFIGKGVAIRHVQTMY 124
Query: 491 RDTYNKLKGKDDPQRETLKAIHYALDCCGLMGGVEQLLADICPQKDVLSSLPMKPCPEAI 670
+ YN + TL H CCG + + CP++ L K C + I
Sbjct: 125 EEAYNDYLKDKERGNGTLITFHSTFQCCGKES--SEQVQPTCPKE----LLGHKNCIDEI 178
Query: 671 KEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAIRRSREMV 799
+ + K FSM+LCCAIR SR+++
Sbjct: 179 EAIISVKLQLIGIVGIGIAGLTIFGMIFSMVLCCAIRTSRDVI 221
>ref|XP_854381.1| PREDICTED: similar to CD81 antigen (26 kDa cell surface protein
TAPA-1) (Target of the antiproliferative antibody 1)
(Tetraspanin-28) (Tspan-28) [Canis familiaris].
Length = 244
Score = 138 bits (348), Expect = 1e-32
Identities = 76/211 (36%), Positives = 110/211 (52%), Gaps = 11/211 (5%)
Frame = +2
Query: 188 LAGIAVLAIGLWLRFDSQTKSIFEQENNN----SSFYTGVYILIGAGALMMVVGFLGCCG 355
LAG +L + LWLR D QT ++ E + ++FY G+YILI GA+MM VGFLGC G
Sbjct: 31 LAGGVILGVALWLRHDPQTTNLLYLELGDRPAPNTFYVGIYILIAVGAVMMFVGFLGCYG 90
Query: 356 AVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYNKLKGKDDPQ- 532
A+QESQC+ ++FA E+AA IWG+ +KDQ+ K+V+ FY + D+
Sbjct: 91 AIQESQCLLGTFFTCLVILFACEVAAGIWGFVNKDQIAKDVKQFYDQALQQAVVDDEANN 150
Query: 533 -RETLKAIHYALDCCGLMG----GVEQLLADICPQ-KDVLSSLPMKPCPEAIKEVFQNKF 694
+ +K H L+CCG L +CP +V+S+L + C + I ++F K
Sbjct: 151 AKAVVKTFHETLNCCGSSTLSALTTSMLKNSLCPSGSNVISNLFKEDCHQKIDDLFSGKL 210
Query: 695 HXXXXXXXXXXXXXXXXXXFSMILCCAIRRS 787
+ SM+LCC IR S
Sbjct: 211 YLIGIAAIVVAVIMIFEMILSMVLCCGIRNS 241
>ref|XP_531678.2| PREDICTED: similar to transmembrane 4 superfamily member 3 [Canis
familiaris].
Length = 237
Score = 118 bits (295), Expect = 1e-26
Identities = 71/233 (30%), Positives = 108/233 (46%), Gaps = 18/233 (7%)
Frame = +2
Query: 134 GGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGA 313
G + CIKY +F FNF+FWL GI +LA+ +W+R + I ++ +S Y V ILI
Sbjct: 3 GVSGCIKYSMFIFNFLFWLCGILILAVAIWVRLSKDGQEILSPGDSGTSPYIAVNILIAV 62
Query: 314 GALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYR 493
G+++M++GFLGCCGAV+ES+CM +I +++AA I G + K + + + +
Sbjct: 63 GSIIMILGFLGCCGAVRESRCMLLLFFIGLLLILLLQVAAGILGATFKSESERILNETLH 122
Query: 494 DTYNKLKGKDDPQRETLKAI---HYALDCCGLMGGVE---------------QLLADICP 619
+ L D+ + KA+ CCGL+ G L+D C
Sbjct: 123 ENIKLLSAADENAKAFQKALTEFQNEFKCCGLVNGAADWGNNFQENYKSCECSSLSDSCV 182
Query: 620 QKDVLSSLPMKPCPEAIKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAI 778
D ++ +PC IKEV FSM+L C I
Sbjct: 183 MYDG-KNVYKQPCISLIKEVVAKHILIVIGIAFGLAVIEILGLVFSMVLYCQI 234
>ref|XP_854130.1| PREDICTED: similar to Tetraspanin-18 (Tspan-18) [Canis familiaris].
Length = 248
Score = 95.5 bits (236), Expect = 9e-20
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
Frame = +2
Query: 146 CIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALM 325
C+KYL+F FNF +L G +L IG+W+ D E N TG YIL+ G L+
Sbjct: 8 CMKYLMFVFNFFIFLGGACLLGIGVWVMVDPT--GFREIVAANPLLITGAYILLAMGGLL 65
Query: 326 MVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYN 505
++GFLGCCGAV+E++C+ +IF E++AAI + ++ + +E F ++
Sbjct: 66 FLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTRE--SFTKELTK 123
Query: 506 KLKGKDDPQ--RETLKAIHYALDCCGLMG 586
+G +D T ++ CCG+ G
Sbjct: 124 HYQGNNDTDVFSATWNSVMITFGCCGVNG 152
>ref|XP_862412.1| PREDICTED: similar to CD151 antigen isoform 3 [Canis familiaris].
Length = 259
Score = 93.6 bits (231), Expect = 4e-19
Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 2/149 (1%)
Frame = +2
Query: 137 GTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAG 316
GT C+KYLLF FN FWLAG+AV+A+G+W KS + + ++ YIL+ AG
Sbjct: 11 GTVCLKYLLFTFNCCFWLAGLAVMAVGIWTL---ALKSDYISLLASGTYLATAYILVVAG 67
Query: 317 ALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRD 496
++MV G LGCC +E + + +IF +EI A I Y + Q+ E++D +D
Sbjct: 68 VVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYIYYQQLNAELKDNLKD 127
Query: 497 TYNKLKGKDDPQRET--LKAIHYALDCCG 577
T K + + T + + CCG
Sbjct: 128 TMTKRYHQPGHEGVTSAVDKLQQEFHCCG 156
>ref|XP_533198.1| PREDICTED: similar to CD151 antigen isoform 1 [Canis familiaris].
Length = 252
Score = 93.6 bits (231), Expect = 4e-19
Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 2/149 (1%)
Frame = +2
Query: 137 GTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAG 316
GT C+KYLLF FN FWLAG+AV+A+G+W KS + + ++ YIL+ AG
Sbjct: 11 GTVCLKYLLFTFNCCFWLAGLAVMAVGIWTL---ALKSDYISLLASGTYLATAYILVVAG 67
Query: 317 ALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRD 496
++MV G LGCC +E + + +IF +EI A I Y + Q+ E++D +D
Sbjct: 68 VVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYIYYQQLNAELKDNLKD 127
Query: 497 TYNKLKGKDDPQRET--LKAIHYALDCCG 577
T K + + T + + CCG
Sbjct: 128 TMTKRYHQPGHEGVTSAVDKLQQEFHCCG 156
>ref|XP_854142.1| PREDICTED: similar to CD82 antigen (Inducible membrane protein R2)
(C33 antigen) (IA4) (Metastasis suppressor Kangai 1)
(Suppressor of tumorigenicity-6) (Tetraspanin-27)
(Tspan-27) [Canis familiaris].
Length = 455
Score = 84.7 bits (208), Expect = 2e-16
Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 10/202 (4%)
Frame = +2
Query: 2 CSPEARP------QPPALRSAAQSRVSRPQAPSSRTRPAQASLARTMPVKGGTKCIK--- 154
C P P +P A +S A R +A + A +RT + G+ CIK
Sbjct: 144 CDPRRPPVGLASTEPGAAQSDADGASGRRRACGAEHPAQPAGSSRTGRM--GSACIKVTK 201
Query: 155 YLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALMMVV 334
Y LF FN +F++ G +L G+W+ D ++ I + +++S G + IG GA+ M +
Sbjct: 202 YFLFLFNLLFFILGAVILGFGVWILAD-RSSFISVLQTSSNSLKVGACVFIGVGAVTMFM 260
Query: 335 GFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYNKLK 514
GFLGC GA++E +C+ ++ +++AA + Y ++ +E+ K
Sbjct: 261 GFLGCIGAIKEVRCLLGLYFAFLLLMLIVQVAAGVLFYFSTGKLKQEMGSIVMKLIQDYK 320
Query: 515 -GKDDPQRETLKAIHYALDCCG 577
G++D +E + + CCG
Sbjct: 321 DGQEDRLQEAWDYVQAQVRCCG 342
>ref|XP_853199.1| PREDICTED: similar to tetraspanin 14 [Canis familiaris].
Length = 335
Score = 80.5 bits (197), Expect = 3e-15
Identities = 43/145 (29%), Positives = 70/145 (48%)
Frame = +2
Query: 152 KYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALMMV 331
KYLLF +N +FWLAG+ L +GLW + S + V +L+ G +M
Sbjct: 81 KYLLFSYNIVFWLAGVVFLGVGLWAWSEKGVLSDLTKVTRLHGIDPVVLVLM-VGVVMFT 139
Query: 332 VGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYNKL 511
+GF GC GA++E+ C+ +IF +E+A A+ + +D V ++F+
Sbjct: 140 LGFAGCVGALRENICLLKFFCGTIVLIFFLELAVAVLAFLFQDWVRDRFREFFESNIRSY 199
Query: 512 KGKDDPQRETLKAIHYALDCCGLMG 586
+ D Q + ++ A CCG G
Sbjct: 200 RDDIDLQ-NLIDSLQKANQCCGAYG 223
>ref|XP_850718.1| PREDICTED: similar to Tetraspanin-5 (Tspan-5) (Transmembrane 4
superfamily member 9) (Tetraspan NET-4) isoform 2 [Canis
familiaris].
Length = 268
Score = 79.3 bits (194), Expect = 7e-15
Identities = 44/147 (29%), Positives = 68/147 (46%)
Frame = +2
Query: 146 CIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALM 325
CIKY +FGFN IFW GIA L IGLW + S + F V++ + G +M
Sbjct: 14 CIKYFIFGFNVIFWFLGIAFLGIGLWAWNEKGVLSNISSITDLGGF-DPVWLFLVVGGVM 72
Query: 326 MVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYN 505
++GF GC GA++E+ + +IF +E+ A + + KD + ++ F +
Sbjct: 73 FILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKDQLYFFINNNIR 132
Query: 506 KLKGKDDPQRETLKAIHYALDCCGLMG 586
+ D Q + CCG G
Sbjct: 133 AYRDDIDLQ-NLIDFTQEYWQCCGAFG 158
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,298,000
Number of extensions: 1101079
Number of successful extensions: 4863
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 4826
Number of HSP's successfully gapped: 31
Length of query: 419
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 314
Effective length of database: 15,374,224
Effective search space: 4827506336
Effective search space used: 4827506336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000657
(1259 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001760.1| CD9 antigen [Homo sapiens]. 362 e-100
Alignment gi|NP_004347.1| CD81 antigen [Homo sapiens]. 177 1e-44
Alignment gi|NP_005716.2| tetraspanin-2 [Homo sapiens]. 167 2e-41
Alignment gi|NP_004607.1| tetraspanin-8 [Homo sapiens]. 117 2e-26
Alignment gi|NP_570139.3| tetraspanin-18 [Homo sapiens]. 97 2e-20
Alignment gi|NP_001034579.1| CD151 antigen [Homo sapiens]. 92 8e-19
Alignment gi|NP_620598.1| CD151 antigen [Homo sapiens]. 92 8e-19
Alignment gi|NP_620599.1| CD151 antigen [Homo sapiens]. 92 8e-19
Alignment gi|NP_004348.2| CD151 antigen [Homo sapiens]. 92 8e-19
Alignment gi|NP_002222.1| CD82 antigen isoform 1 [Homo sapiens]. 82 1e-15
>ref|NP_001760.1| CD9 antigen [Homo sapiens].
Length = 228
Score = 362 bits (928), Expect = e-100
Identities = 178/228 (78%), Positives = 191/228 (83%), Gaps = 2/228 (0%)
Frame = +2
Query: 122 MPVKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQE--NNNSSFYTGV 295
MPVKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQE NNNSSFYTGV
Sbjct: 1 MPVKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQETNNNNSSFYTGV 60
Query: 296 YILIGAGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKE 475
YILIGAGALMM+VGFLGCCGAVQESQCM VIFAIEIAAAIWGYSHKD+VIKE
Sbjct: 61 YILIGAGALMMLVGFLGCCGAVQESQCMLGLFFGFLLVIFAIEIAAAIWGYSHKDEVIKE 120
Query: 476 VQDFYRDTYNKLKGKDDPQRETLKAIHYALDCCGLMGGVEQLLADICPQKDVLSSLPMKP 655
VQ+FY+DTYNKLK KD+PQRETLKAIHYAL+CCGL GGVEQ ++DICP+KDVL + +K
Sbjct: 121 VQEFYKDTYNKLKTKDEPQRETLKAIHYALNCCGLAGGVEQFISDICPKKDVLETFTVKS 180
Query: 656 CPEAIKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAIRRSREMV 799
CP+AIKEVF NKFH FSMILCCAIRR+REMV
Sbjct: 181 CPDAIKEVFDNKFHIIGAVGIGIAVVMIFGMIFSMILCCAIRRNREMV 228
>ref|NP_004347.1| CD81 antigen [Homo sapiens].
Length = 236
Score = 177 bits (450), Expect = 1e-44
Identities = 94/233 (40%), Positives = 130/233 (55%), Gaps = 11/233 (4%)
Frame = +2
Query: 122 MPVKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNN----SSFYT 289
M V+G TKCIKYLLF FNF+FWLAG +L + LWLR D QT ++ E + ++FY
Sbjct: 1 MGVEGCTKCIKYLLFVFNFVFWLAGGVILGVALWLRHDPQTTNLLYLELGDKPAPNTFYV 60
Query: 290 GVYILIGAGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVI 469
G+YILI GA+MM VGFLGC GA+QESQC+ ++FA E+AA IWG+ +KDQ+
Sbjct: 61 GIYILIAVGAVMMFVGFLGCYGAIQESQCLLGTFFTCLVILFACEVAAGIWGFVNKDQIA 120
Query: 470 KEVQDFYRDTYNKLKGKDDPQ--RETLKAIHYALDCCGLMG----GVEQLLADICPQ-KD 628
K+V+ FY + DD + +K H LDCCG L ++CP +
Sbjct: 121 KDVKQFYDQALQQAVVDDDANNAKAVVKTFHETLDCCGSSTLTALTTSVLKNNLCPSGSN 180
Query: 629 VLSSLPMKPCPEAIKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAIRRS 787
++S+L + C + I ++F K + SM+LCC IR S
Sbjct: 181 IISNLFKEDCHQKIDDLFSGKLYLIGIAAIVVAVIMIFEMILSMVLCCGIRNS 233
>ref|NP_005716.2| tetraspanin-2 [Homo sapiens].
Length = 221
Score = 167 bits (422), Expect = 2e-41
Identities = 85/223 (38%), Positives = 116/223 (52%)
Frame = +2
Query: 131 KGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIG 310
+GG +CIKYLL GFN +FWLAG AV+A GLW RF K + ++ + FY G+Y+L+G
Sbjct: 5 RGGLRCIKYLLLGFNLLFWLAGSAVIAFGLWFRFGGAIKELSSEDKSPEYFYVGLYVLVG 64
Query: 311 AGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFY 490
AGALMM VGF GCCGA++ESQC+ VIFA E+ ++ + K I+ VQ Y
Sbjct: 65 AGALMMAVGFFGCCGAMRESQCVLGSFFTCLLVIFAAEVTTGVFAFIGKGVAIRHVQTMY 124
Query: 491 RDTYNKLKGKDDPQRETLKAIHYALDCCGLMGGVEQLLADICPQKDVLSSLPMKPCPEAI 670
+ YN TL H CCG + + CP++ L K C + I
Sbjct: 125 EEAYNDYLKDRGKGNGTLITFHSTFQCCGKES--SEQVQPTCPKE----LLGHKNCIDEI 178
Query: 671 KEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAIRRSREMV 799
+ + K FSM+LCCAIR SR+++
Sbjct: 179 ETIISVKLQLIGIVGIGIAGLTIFGMIFSMVLCCAIRNSRDVI 221
>ref|NP_004607.1| tetraspanin-8 [Homo sapiens].
Length = 237
Score = 117 bits (293), Expect = 2e-26
Identities = 57/155 (36%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Frame = +2
Query: 134 GGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGA 313
G + CIKY +F FNF+FWL GI +LA+ +W+R + +++IF E+ SS Y V ILI
Sbjct: 3 GVSACIKYSMFTFNFLFWLCGILILALAIWVRVSNDSQAIFGSEDVGSSSYVAVDILIAV 62
Query: 314 GALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYR 493
GA++M++GFLGCCGA++ES+CM +I +++A I G K + + V +
Sbjct: 63 GAIIMILGFLGCCGAIKESRCMLLLFFIGLLLILLLQVATGILGAVFKSKSDRIVNETLY 122
Query: 494 DTYNKLKGKDDPQRETLKAI---HYALDCCGLMGG 589
+ L + +++ +AI CCGL+ G
Sbjct: 123 ENTKLLSATGESEKQFQEAIIVFQEEFKCCGLVNG 157
>ref|NP_570139.3| tetraspanin-18 [Homo sapiens].
Length = 248
Score = 97.4 bits (241), Expect = 2e-20
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
Frame = +2
Query: 146 CIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALM 325
C+KYL+F FNF +L G +LAIG+W+ D E N TG YIL+ G L+
Sbjct: 8 CMKYLMFVFNFFIFLGGACLLAIGIWVMVDPT--GFREIVAANPLLLTGAYILLAMGGLL 65
Query: 326 MVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYN 505
++GFLGCCGAV+E++C+ +IF E++AAI + ++ + +E F ++
Sbjct: 66 FLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTREF--FTKELTK 123
Query: 506 KLKGKDDPQ--RETLKAIHYALDCCGLMGGVEQLLADICPQKDVLSSLPMKPCPEA 667
+G +D T ++ CCG+ G + A + L +L + PEA
Sbjct: 124 HYQGNNDTDVFSATWNSVMITFGCCGVNGPEDFKFASVFR----LLTLDSEEVPEA 175
>ref|NP_001034579.1| CD151 antigen [Homo sapiens].
Length = 253
Score = 92.4 bits (228), Expect = 8e-19
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
Frame = +2
Query: 137 GTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAG 316
GT C+KYLLF +N FWLAG+AV+A+G+W KS + + ++ YIL+ AG
Sbjct: 12 GTVCLKYLLFTYNCCFWLAGLAVMAVGIWTL---ALKSDYISLLASGTYLATAYILVVAG 68
Query: 317 ALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRD 496
++MV G LGCC +E + + +IF +EI A I Y++ Q+ E+++ +D
Sbjct: 69 TVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKD 128
Query: 497 TYNKLKGKDDPQRET--LKAIHYALDCCG 577
T K + + T + + CCG
Sbjct: 129 TMTKRYHQPGHEAVTSAVDQLQQEFHCCG 157
>ref|NP_620598.1| CD151 antigen [Homo sapiens].
Length = 253
Score = 92.4 bits (228), Expect = 8e-19
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
Frame = +2
Query: 137 GTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAG 316
GT C+KYLLF +N FWLAG+AV+A+G+W KS + + ++ YIL+ AG
Sbjct: 12 GTVCLKYLLFTYNCCFWLAGLAVMAVGIWTL---ALKSDYISLLASGTYLATAYILVVAG 68
Query: 317 ALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRD 496
++MV G LGCC +E + + +IF +EI A I Y++ Q+ E+++ +D
Sbjct: 69 TVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKD 128
Query: 497 TYNKLKGKDDPQRET--LKAIHYALDCCG 577
T K + + T + + CCG
Sbjct: 129 TMTKRYHQPGHEAVTSAVDQLQQEFHCCG 157
>ref|NP_620599.1| CD151 antigen [Homo sapiens].
Length = 253
Score = 92.4 bits (228), Expect = 8e-19
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
Frame = +2
Query: 137 GTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAG 316
GT C+KYLLF +N FWLAG+AV+A+G+W KS + + ++ YIL+ AG
Sbjct: 12 GTVCLKYLLFTYNCCFWLAGLAVMAVGIWTL---ALKSDYISLLASGTYLATAYILVVAG 68
Query: 317 ALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRD 496
++MV G LGCC +E + + +IF +EI A I Y++ Q+ E+++ +D
Sbjct: 69 TVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKD 128
Query: 497 TYNKLKGKDDPQRET--LKAIHYALDCCG 577
T K + + T + + CCG
Sbjct: 129 TMTKRYHQPGHEAVTSAVDQLQQEFHCCG 157
>ref|NP_004348.2| CD151 antigen [Homo sapiens].
Length = 253
Score = 92.4 bits (228), Expect = 8e-19
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
Frame = +2
Query: 137 GTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAG 316
GT C+KYLLF +N FWLAG+AV+A+G+W KS + + ++ YIL+ AG
Sbjct: 12 GTVCLKYLLFTYNCCFWLAGLAVMAVGIWTL---ALKSDYISLLASGTYLATAYILVVAG 68
Query: 317 ALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRD 496
++MV G LGCC +E + + +IF +EI A I Y++ Q+ E+++ +D
Sbjct: 69 TVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKD 128
Query: 497 TYNKLKGKDDPQRET--LKAIHYALDCCG 577
T K + + T + + CCG
Sbjct: 129 TMTKRYHQPGHEAVTSAVDQLQQEFHCCG 157
>ref|NP_002222.1| CD82 antigen isoform 1 [Homo sapiens].
Length = 267
Score = 82.0 bits (201), Expect = 1e-15
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Frame = +2
Query: 137 GTKCIK---YLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILI 307
G+ CIK Y LF FN IF++ G +L G+W+ D ++ I + ++SS G Y+ I
Sbjct: 2 GSACIKVTKYFLFLFNLIFFILGAVILGFGVWILAD-KSSFISVLQTSSSSLRMGAYVFI 60
Query: 308 GAGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKE---- 475
G GA+ M++GFLGC GAV E +C+ +I ++ A Y + ++ +E
Sbjct: 61 GVGAVTMLMGFLGCIGAVNEVRCLLGLYFAFLLLILIAQVTAGALFYFNMGKLKQEMGGI 120
Query: 476 VQDFYRDTYNKLKGKDDPQRETLKAIHYALDCCG 577
V + RD YN ++D ++ + + CCG
Sbjct: 121 VTELIRD-YN--SSREDSLQDAWDYVQAQVKCCG 151
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,422,304
Number of extensions: 1070366
Number of successful extensions: 4663
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 4615
Number of HSP's successfully gapped: 36
Length of query: 419
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,835,944
Effective search space: 4658486416
Effective search space used: 4658486416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000657
(1259 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031683.1| CD9 antigen [Mus musculus]. 351 8e-97
Alignment gi|NP_598416.1| CD81 antigen [Mus musculus]. 178 9e-45
Alignment gi|NP_081809.2| tetraspanin-2 isoform 1 [Mus musculus]. 169 5e-42
Alignment gi|NP_001230061.1| tetraspanin-2 isoform 2 [Mus musculus]. 136 4e-32
Alignment gi|NP_001162151.1| tetraspanin 8 [Mus musculus]. 112 8e-25
Alignment gi|NP_001162150.1| tetraspanin 8 [Mus musculus]. 112 8e-25
Alignment gi|NP_666122.1| tetraspanin 8 [Mus musculus]. 112 8e-25
Alignment gi|NP_899003.1| tetraspanin-18 [Mus musculus]. 96 5e-20
Alignment gi|NP_001104520.1| CD151 antigen [Mus musculus]. 91 2e-18
Alignment gi|NP_001104519.1| CD151 antigen [Mus musculus]. 91 2e-18
>ref|NP_031683.1| CD9 antigen [Mus musculus].
Length = 226
Score = 351 bits (900), Expect = 8e-97
Identities = 168/226 (74%), Positives = 186/226 (82%)
Frame = +2
Query: 122 MPVKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYI 301
MPVKGG+KCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENN+SSFYTGVYI
Sbjct: 1 MPVKGGSKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNHSSFYTGVYI 60
Query: 302 LIGAGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQ 481
LIGAGALMM+VGFLGCCGAVQESQCM VIFAIEIAAA+WGY+HKD+VIKE+Q
Sbjct: 61 LIGAGALMMLVGFLGCCGAVQESQCMLGLFFGFLLVIFAIEIAAAVWGYTHKDEVIKELQ 120
Query: 482 DFYRDTYNKLKGKDDPQRETLKAIHYALDCCGLMGGVEQLLADICPQKDVLSSLPMKPCP 661
+FY+DTY KL+ KD+PQRETLKAIH ALDCCG+ G +EQ ++D CP+K +L S +KPCP
Sbjct: 121 EFYKDTYQKLRSKDEPQRETLKAIHMALDCCGIAGPLEQFISDTCPKKQLLESFQVKPCP 180
Query: 662 EAIKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAIRRSREMV 799
EAI EVF NKFH FSMILCCAIRRSREMV
Sbjct: 181 EAISEVFNNKFHIIGAVGIGIAVVMIFGMIFSMILCCAIRRSREMV 226
>ref|NP_598416.1| CD81 antigen [Mus musculus].
Length = 236
Score = 178 bits (451), Expect = 9e-45
Identities = 96/233 (41%), Positives = 128/233 (54%), Gaps = 11/233 (4%)
Frame = +2
Query: 122 MPVKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNN----SSFYT 289
M V+G TKCIKYLLF FNF+FWLAG +L + LWLR D QT S+ E N ++FY
Sbjct: 1 MGVEGCTKCIKYLLFVFNFVFWLAGGVILGVALWLRHDPQTTSLLYLELGNKPAPNTFYV 60
Query: 290 GVYILIGAGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVI 469
G+YILI GA+MM VGFLGC GA+QESQC+ ++FA E+AA IWG+ +KDQ+
Sbjct: 61 GIYILIAVGAVMMFVGFLGCYGAIQESQCLLGTFFTCLVILFACEVAAGIWGFVNKDQIA 120
Query: 470 KEVQDFYRDTYNKLKGKDDPQ--RETLKAIHYALDCCGLMG----GVEQLLADICPQ-KD 628
K+V+ FY + DD + +K H L+CCG L +CP +
Sbjct: 121 KDVKQFYDQALQQAVMDDDANNAKAVVKTFHETLNCCGSNALTTLTTTILRNSLCPSGGN 180
Query: 629 VLSSLPMKPCPEAIKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAIRRS 787
+L+ L + C + I E+F K + SM+LCC IR S
Sbjct: 181 ILTPLLQQDCHQKIDELFSGKLYLIGIAAIVVAVIMIFEMILSMVLCCGIRNS 233
>ref|NP_081809.2| tetraspanin-2 isoform 1 [Mus musculus].
Length = 221
Score = 169 bits (427), Expect = 5e-42
Identities = 88/224 (39%), Positives = 119/224 (53%), Gaps = 1/224 (0%)
Frame = +2
Query: 131 KGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIG 310
+GG +CIKYLL GFN +FWLAG AV+A GLW RF K + ++ + FY G+Y+L+G
Sbjct: 5 RGGLRCIKYLLLGFNLLFWLAGSAVIAFGLWFRFGGTMKDLSSEDKSPEYFYVGLYVLVG 64
Query: 311 AGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFY 490
AGALMM VGF GCCGA++ESQC+ VIFA E+ ++ + KD I+ VQ Y
Sbjct: 65 AGALMMTVGFFGCCGAMRESQCVLGSFFTCLLVIFAAEVTTGVFAFIGKDVAIRHVQSMY 124
Query: 491 RDTYNKLKGKDDPQRETLKAIHYALDCCGLMGGVEQLLADICPQKDVLSSLP-MKPCPEA 667
+ Y+ TL H A CCG + + CP++ LP K C +
Sbjct: 125 EEAYSDYLKDRARGNGTLITFHSAFQCCGKES--SEQVQPTCPKE-----LPGHKNCIDK 177
Query: 668 IKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAIRRSREMV 799
I+ V K FSM+LCCAIR SR+++
Sbjct: 178 IETVISAKLQLIGIVGIGIAGLTIFGMIFSMVLCCAIRNSRDVI 221
>ref|NP_001230061.1| tetraspanin-2 isoform 2 [Mus musculus].
Length = 217
Score = 136 bits (342), Expect = 4e-32
Identities = 75/205 (36%), Positives = 103/205 (50%), Gaps = 1/205 (0%)
Frame = +2
Query: 188 LAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALMMVVGFLGCCGAVQE 367
LAG AV+A GLW RF K + ++ + FY G+Y+L+GAGALMM VGF GCCGA++E
Sbjct: 20 LAGSAVIAFGLWFRFGGTMKDLSSEDKSPEYFYVGLYVLVGAGALMMTVGFFGCCGAMRE 79
Query: 368 SQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYNKLKGKDDPQRETLK 547
SQC+ VIFA E+ ++ + KD I+ VQ Y + Y+ TL
Sbjct: 80 SQCVLGSFFTCLLVIFAAEVTTGVFAFIGKDVAIRHVQSMYEEAYSDYLKDRARGNGTLI 139
Query: 548 AIHYALDCCGLMGGVEQLLADICPQKDVLSSLP-MKPCPEAIKEVFQNKFHXXXXXXXXX 724
H A CCG + + CP++ LP K C + I+ V K
Sbjct: 140 TFHSAFQCCGKES--SEQVQPTCPKE-----LPGHKNCIDKIETVISAKLQLIGIVGIGI 192
Query: 725 XXXXXXXXXFSMILCCAIRRSREMV 799
FSM+LCCAIR SR+++
Sbjct: 193 AGLTIFGMIFSMVLCCAIRNSRDVI 217
>ref|NP_001162151.1| tetraspanin 8 [Mus musculus].
Length = 235
Score = 112 bits (279), Expect = 8e-25
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Frame = +2
Query: 134 GGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGA 313
G + C+KY +F FNF+FW+ G +L + +W+R K I +++++ + V ILI
Sbjct: 3 GVSSCLKYSMFFFNFLFWVCGTLILGLAIWVRVSKDGKEIITSGDSSTNPFIAVNILIAV 62
Query: 314 GALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYR 493
G+++MV+GFLGCCGAV+ES+CM +I +++AA I G + K + + + +
Sbjct: 63 GSIIMVLGFLGCCGAVKESRCMLLLFFIGLLLILILQVAAGILGAAFKPEYNRILNETLY 122
Query: 494 DTYNKLKGKDDPQRETLKAI---HYALDCCGLMGG--------VEQLLADICPQKDVL-- 634
+ L D ++ KA+ CCGL G VE + C D
Sbjct: 123 ENAKLLSDNTDEAKDFQKAMIVFQSEFKCCGLENGAADWGNNFVEAKESCQCTGTDCATY 182
Query: 635 --SSLPMKPCPEAIKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAI 778
SS+ K C IK++F+ FSM+L C I
Sbjct: 183 QGSSVYPKTCLSLIKDLFEKNIIIVIGIAFGLAVIEILGLVFSMVLYCQI 232
>ref|NP_001162150.1| tetraspanin 8 [Mus musculus].
Length = 235
Score = 112 bits (279), Expect = 8e-25
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Frame = +2
Query: 134 GGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGA 313
G + C+KY +F FNF+FW+ G +L + +W+R K I +++++ + V ILI
Sbjct: 3 GVSSCLKYSMFFFNFLFWVCGTLILGLAIWVRVSKDGKEIITSGDSSTNPFIAVNILIAV 62
Query: 314 GALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYR 493
G+++MV+GFLGCCGAV+ES+CM +I +++AA I G + K + + + +
Sbjct: 63 GSIIMVLGFLGCCGAVKESRCMLLLFFIGLLLILILQVAAGILGAAFKPEYNRILNETLY 122
Query: 494 DTYNKLKGKDDPQRETLKAI---HYALDCCGLMGG--------VEQLLADICPQKDVL-- 634
+ L D ++ KA+ CCGL G VE + C D
Sbjct: 123 ENAKLLSDNTDEAKDFQKAMIVFQSEFKCCGLENGAADWGNNFVEAKESCQCTGTDCATY 182
Query: 635 --SSLPMKPCPEAIKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAI 778
SS+ K C IK++F+ FSM+L C I
Sbjct: 183 QGSSVYPKTCLSLIKDLFEKNIIIVIGIAFGLAVIEILGLVFSMVLYCQI 232
>ref|NP_666122.1| tetraspanin 8 [Mus musculus].
Length = 235
Score = 112 bits (279), Expect = 8e-25
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Frame = +2
Query: 134 GGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGA 313
G + C+KY +F FNF+FW+ G +L + +W+R K I +++++ + V ILI
Sbjct: 3 GVSSCLKYSMFFFNFLFWVCGTLILGLAIWVRVSKDGKEIITSGDSSTNPFIAVNILIAV 62
Query: 314 GALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYR 493
G+++MV+GFLGCCGAV+ES+CM +I +++AA I G + K + + + +
Sbjct: 63 GSIIMVLGFLGCCGAVKESRCMLLLFFIGLLLILILQVAAGILGAAFKPEYNRILNETLY 122
Query: 494 DTYNKLKGKDDPQRETLKAI---HYALDCCGLMGG--------VEQLLADICPQKDVL-- 634
+ L D ++ KA+ CCGL G VE + C D
Sbjct: 123 ENAKLLSDNTDEAKDFQKAMIVFQSEFKCCGLENGAADWGNNFVEAKESCQCTGTDCATY 182
Query: 635 --SSLPMKPCPEAIKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAI 778
SS+ K C IK++F+ FSM+L C I
Sbjct: 183 QGSSVYPKTCLSLIKDLFEKNIIIVIGIAFGLAVIEILGLVFSMVLYCQI 232
>ref|NP_899003.1| tetraspanin-18 [Mus musculus].
Length = 248
Score = 96.3 bits (238), Expect = 5e-20
Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Frame = +2
Query: 146 CIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALM 325
C+KYL+F FNF +L G +L +G+W+ D E N TG YI++ G L+
Sbjct: 8 CMKYLMFVFNFFVFLGGACLLGVGIWVLVDPT--GFREIVATNPLLTTGAYIVLAMGGLL 65
Query: 326 MVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYN 505
++GFLGCCGAV+E++C+ +IF +E++AAI + ++ + +E F ++
Sbjct: 66 FLLGFLGCCGAVRENRCLLLFFFLFILIIFLVELSAAILAFIFREHLTREF--FTKELTK 123
Query: 506 KLKGKDDPQ--RETLKAIHYALDCCGLMGGVEQLLADI 613
+G +D T ++ CCG+ G + LA +
Sbjct: 124 HYQGDNDTDVFSATWNSVMITFGCCGVNGPEDFKLASV 161
>ref|NP_001104520.1| CD151 antigen [Mus musculus].
Length = 253
Score = 90.9 bits (224), Expect = 2e-18
Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 2/149 (1%)
Frame = +2
Query: 137 GTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAG 316
GT C+KYLLF +N FWLAG+AV+A+G+W KS + +S++ YIL+ AG
Sbjct: 12 GTVCLKYLLFTYNCCFWLAGLAVMAVGIWTL---ALKSDYISLLASSTYLATAYILVVAG 68
Query: 317 ALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRD 496
++MV G LGCC +E + + +IF +EI A I Y + Q+ E+++ +D
Sbjct: 69 VVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLNTELKENLKD 128
Query: 497 TYNKL--KGKDDPQRETLKAIHYALDCCG 577
T K + + + + CCG
Sbjct: 129 TMVKRYHQSGHEGVSSAVDKLQQEFHCCG 157
>ref|NP_001104519.1| CD151 antigen [Mus musculus].
Length = 253
Score = 90.9 bits (224), Expect = 2e-18
Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 2/149 (1%)
Frame = +2
Query: 137 GTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAG 316
GT C+KYLLF +N FWLAG+AV+A+G+W KS + +S++ YIL+ AG
Sbjct: 12 GTVCLKYLLFTYNCCFWLAGLAVMAVGIWTL---ALKSDYISLLASSTYLATAYILVVAG 68
Query: 317 ALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRD 496
++MV G LGCC +E + + +IF +EI A I Y + Q+ E+++ +D
Sbjct: 69 VVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLNTELKENLKD 128
Query: 497 TYNKL--KGKDDPQRETLKAIHYALDCCG 577
T K + + + + CCG
Sbjct: 129 TMVKRYHQSGHEGVSSAVDKLQQEFHCCG 157
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,058,190
Number of extensions: 901605
Number of successful extensions: 4081
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 4041
Number of HSP's successfully gapped: 32
Length of query: 419
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 315
Effective length of database: 12,493,815
Effective search space: 3935551725
Effective search space used: 3935551725
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000657
(1259 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999171.1| CD9 antigen [Sus scrofa]. 397 e-111
Alignment gi|XP_003355649.1| PREDICTED: CD9 antigen-like [Sus scrofa]. 353 1e-97
Alignment gi|NP_001072147.1| CD81 antigen [Sus scrofa]. 172 4e-43
Alignment gi|XP_001928014.2| PREDICTED: tetraspanin-2 [Sus scrofa]. 165 6e-41
Alignment gi|XP_003122898.2| PREDICTED: tetraspanin-18-like [Sus scrofa]. 95 7e-20
Alignment gi|NP_001230794.1| CD151 molecule (Raph blood group) [Sus scrof... 89 7e-18
Alignment gi|NP_001138690.1| CD82 antigen [Sus scrofa]. 84 2e-16
Alignment gi|XP_003122444.2| PREDICTED: tetraspanin-4-like [Sus scrofa]. 82 6e-16
Alignment gi|XP_001926637.1| PREDICTED: tetraspanin-14-like isoform 1 [Su... 81 1e-15
Alignment gi|XP_003357118.1| PREDICTED: tetraspanin-5-like [Sus scrofa]. 79 4e-15
>ref|NP_999171.1| CD9 antigen [Sus scrofa].
Length = 226
Score = 397 bits (1021), Expect = e-111
Identities = 197/226 (87%), Positives = 198/226 (87%)
Frame = +2
Query: 122 MPVKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYI 301
MPVKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYI
Sbjct: 1 MPVKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYI 60
Query: 302 LIGAGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQ 481
LIGAGALMMVVGFLGCCGAVQESQCM VIFAIEIAAAIWGYSHKDQVIKEVQ
Sbjct: 61 LIGAGALMMVVGFLGCCGAVQESQCMLGLFFGFLLVIFAIEIAAAIWGYSHKDQVIKEVQ 120
Query: 482 DFYRDTYNKLKGKDDPQRETLKAIHYALDCCGLMGGVEQLLADICPQKDVLSSLPMKPCP 661
DFYRDTYNKLKGKDDPQRETLKAIHYALDCCGLMG VEQLLADICPQ+DVLSSLPMKPCP
Sbjct: 121 DFYRDTYNKLKGKDDPQRETLKAIHYALDCCGLMGEVEQLLADICPQRDVLSSLPMKPCP 180
Query: 662 EAIKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAIRRSREMV 799
EAIKEVFQNKFH FSMILCCAIRRSREMV
Sbjct: 181 EAIKEVFQNKFHIIGAVGIGIAVVMIFGMIFSMILCCAIRRSREMV 226
>ref|XP_003355649.1| PREDICTED: CD9 antigen-like [Sus scrofa].
Length = 242
Score = 353 bits (905), Expect = 1e-97
Identities = 177/204 (86%), Positives = 177/204 (86%)
Frame = +2
Query: 188 LAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALMMVVGFLGCCGAVQE 367
LAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALMMVVGFLGCCGAVQE
Sbjct: 39 LAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALMMVVGFLGCCGAVQE 98
Query: 368 SQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYNKLKGKDDPQRETLK 547
SQCM VIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYNKLKGKDDPQRETLK
Sbjct: 99 SQCMLGLFFGFLLVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYNKLKGKDDPQRETLK 158
Query: 548 AIHYALDCCGLMGGVEQLLADICPQKDVLSSLPMKPCPEAIKEVFQNKFHXXXXXXXXXX 727
AIHYALDCCGLMGGVEQLLADICPQKDVLSSLPMKPCPEAIKEVFQNKFH
Sbjct: 159 AIHYALDCCGLMGGVEQLLADICPQKDVLSSLPMKPCPEAIKEVFQNKFHIIGAVGIGIA 218
Query: 728 XXXXXXXXFSMILCCAIRRSREMV 799
FSMILCCAIRRSREMV
Sbjct: 219 VVMIFGMIFSMILCCAIRRSREMV 242
>ref|NP_001072147.1| CD81 antigen [Sus scrofa].
Length = 236
Score = 172 bits (436), Expect = 4e-43
Identities = 94/233 (40%), Positives = 127/233 (54%), Gaps = 11/233 (4%)
Frame = +2
Query: 122 MPVKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNN----SSFYT 289
M V+G TKCIK LLF FNF+FWLAG +L + LWLR D QT S+ E + ++FY
Sbjct: 1 MGVEGCTKCIKDLLFVFNFVFWLAGGVILGVALWLRHDPQTTSLLYLELGDKPAPNTFYV 60
Query: 290 GVYILIGAGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVI 469
G+YILI GA+MM VGFLGC GA+QESQC+ ++FA E+AA IWG+ +KDQ+
Sbjct: 61 GIYILIAVGAVMMFVGFLGCYGAIQESQCLLGTFFTCLVILFACEVAAGIWGFVNKDQIA 120
Query: 470 KEVQDFYRDTYNKLKGKDDPQ--RETLKAIHYALDCCG----LMGGVEQLLADICPQ-KD 628
K+V+ FY + DD + +K H L+CCG L +CP +
Sbjct: 121 KDVKQFYDQALQQAIVDDDANNAKAVVKTFHETLNCCGSNTLTTLTTSVLKNSLCPSGGN 180
Query: 629 VLSSLPMKPCPEAIKEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAIRRS 787
++S+L + C I E+F K + SM+LCC IR S
Sbjct: 181 IISNLMKEDCHSKIDELFSGKLYLIGIAAIVVAVIMIFEMILSMVLCCGIRNS 233
>ref|XP_001928014.2| PREDICTED: tetraspanin-2 [Sus scrofa].
Length = 221
Score = 165 bits (417), Expect = 6e-41
Identities = 84/223 (37%), Positives = 115/223 (51%)
Frame = +2
Query: 131 KGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIG 310
+GG +CIKYLL GFN +FWLAG AV+A GLW RF K ++ + FY G+Y+L+G
Sbjct: 5 RGGLRCIKYLLLGFNLLFWLAGSAVIAFGLWFRFGGTMKDFSSEDKSPEYFYMGLYVLVG 64
Query: 311 AGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFY 490
AG LMM VGF GCCGA +ESQC+ VIFA E+ ++ + K I+ VQ Y
Sbjct: 65 AGVLMMAVGFFGCCGATRESQCVLGSFFTCLLVIFAAEVTTGVFAFIGKGVAIRHVQTMY 124
Query: 491 RDTYNKLKGKDDPQRETLKAIHYALDCCGLMGGVEQLLADICPQKDVLSSLPMKPCPEAI 670
+ YN + TL H A CCG + + CP++ L K C + I
Sbjct: 125 EEAYNDYLRDREKGNGTLITFHSAFQCCGKES--SEQVQPTCPKE----LLGHKNCIDEI 178
Query: 671 KEVFQNKFHXXXXXXXXXXXXXXXXXXFSMILCCAIRRSREMV 799
+ + K FSM+LCCAIR S++++
Sbjct: 179 ETIISVKLQLVGIVGIGIAGLTIFGMIFSMVLCCAIRNSQDVI 221
>ref|XP_003122898.2| PREDICTED: tetraspanin-18-like [Sus scrofa].
Length = 263
Score = 95.1 bits (235), Expect = 7e-20
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
Frame = +2
Query: 146 CIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALM 325
C+KYL+F FNF +L G +L +G+W+ D E N TG YIL+ G L+
Sbjct: 8 CMKYLMFVFNFFIFLGGACLLGVGIWVMVDPT--GFREIVAANPLLITGAYILLAMGGLL 65
Query: 326 MVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYN 505
++GFLGCCGAV+E++C+ +IF E++AAI + ++ + +E F ++
Sbjct: 66 FLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTREF--FTKELTK 123
Query: 506 KLKGKDDPQ--RETLKAIHYALDCCGLMG 586
+G +D T ++ CCG+ G
Sbjct: 124 HYQGNNDTDVFSATWNSVMITFGCCGVNG 152
>ref|NP_001230794.1| CD151 molecule (Raph blood group) [Sus scrofa].
Length = 253
Score = 88.6 bits (218), Expect = 7e-18
Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Frame = +2
Query: 137 GTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAG 316
GT C+KYLLF FN FWLAG+AV+A+G+W KS + + ++ YIL+ AG
Sbjct: 12 GTICLKYLLFTFNCCFWLAGLAVMAVGIW---TLALKSDYISLLASGTYLATAYILVVAG 68
Query: 317 ALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRD 496
++MV G LGCC +E + + +IF +EI A + Y + Q+ E++ +D
Sbjct: 69 IVVMVTGVLGCCATFKERRNLLRLYFILLLLIFLLEIIAGVLAYVYYQQLSAELKANLKD 128
Query: 497 TYNKLKGKDDPQRET--LKAIHYALDCCG 577
T +K + + T + CCG
Sbjct: 129 TLSKRYRQPGHEGVTSATDKLQQEFHCCG 157
>ref|NP_001138690.1| CD82 antigen [Sus scrofa].
Length = 266
Score = 84.0 bits (206), Expect = 2e-16
Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Frame = +2
Query: 137 GTKCIK---YLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILI 307
G CIK Y LF FN +F++ G +L G+W+ D ++ I + +++S G YI I
Sbjct: 2 GAACIKVTKYFLFLFNLLFFVLGAVILGFGVWILAD-RSSFISVLQTSSTSLKVGAYIFI 60
Query: 308 GAGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDF 487
GA M++GFLGC GAV E +C+ +I ++AA + Y + ++ +E+
Sbjct: 61 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 120
Query: 488 YRDTYNKL-KGKDDPQRETLKAIHYALDCCG 577
+ K +G+ D +E + + CCG
Sbjct: 121 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCG 151
>ref|XP_003122444.2| PREDICTED: tetraspanin-4-like [Sus scrofa].
Length = 238
Score = 82.0 bits (201), Expect = 6e-16
Identities = 35/117 (29%), Positives = 68/117 (58%)
Frame = +2
Query: 131 KGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIG 310
+G + +KYL+F FN +FWL G +L +G+WL + T+ F +++ + +LI
Sbjct: 3 RGCLQGVKYLMFAFNLLFWLGGCGILGVGIWL---AATQGNFATLSSSFPSLSAANLLIA 59
Query: 311 AGALMMVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQ 481
G L+M +GF+GC GA++E++C+ ++F +E A+ +++ D++ + Q
Sbjct: 60 TGTLVMAIGFVGCIGAIKENRCLLLTFFVVLLLVFLLEATVAVLFFTYTDKIDRYAQ 116
>ref|XP_001926637.1| PREDICTED: tetraspanin-14-like isoform 1 [Sus scrofa].
Length = 270
Score = 80.9 bits (198), Expect = 1e-15
Identities = 43/145 (29%), Positives = 70/145 (48%)
Frame = +2
Query: 152 KYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALMMV 331
KYLLF +N +FWLAG+ L +GLW + S + V +L+ G +M
Sbjct: 16 KYLLFSYNIVFWLAGVVFLGVGLWAWSEKGVLSDLTKVTRMHGIDPVVLVLM-VGVVMFT 74
Query: 332 VGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYNKL 511
+GF GC GA++E+ C+ +IF +E+A A+ + +D V ++F+
Sbjct: 75 LGFAGCVGALRENICLLNFFCSAIVLIFFLELAVAVLAFLFQDWVRDRFREFFESNIRSY 134
Query: 512 KGKDDPQRETLKAIHYALDCCGLMG 586
+ D Q + ++ A CCG G
Sbjct: 135 RDDIDLQ-NLIDSLQKANQCCGAYG 158
>ref|XP_003357118.1| PREDICTED: tetraspanin-5-like [Sus scrofa].
Length = 268
Score = 79.3 bits (194), Expect = 4e-15
Identities = 44/147 (29%), Positives = 68/147 (46%)
Frame = +2
Query: 146 CIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALM 325
CIKY +FGFN IFW GIA L IGLW + S + F V++ + G +M
Sbjct: 14 CIKYFIFGFNVIFWFLGIAFLGIGLWAWNEKGVLSNISSITDLGGF-DPVWLFLVVGGVM 72
Query: 326 MVVGFLGCCGAVQESQCMXXXXXXXXXVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYN 505
++GF GC GA++E+ + +IF +E+ A + + KD + ++ F +
Sbjct: 73 FILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKDQLYFFINNNIR 132
Query: 506 KLKGKDDPQRETLKAIHYALDCCGLMG 586
+ D Q + CCG G
Sbjct: 133 AYRDDIDLQ-NLIDFTQEYWQCCGAFG 158
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,966,236
Number of extensions: 723858
Number of successful extensions: 3158
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 3125
Number of HSP's successfully gapped: 24
Length of query: 419
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 317
Effective length of database: 8,804,438
Effective search space: 2791006846
Effective search space used: 2791006846
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000657
(1259 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 841 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 841 bits (424), Expect = 0.0
Identities = 472/496 (95%)
Strand = Plus / Minus
Query: 736 gattttcggcatgatcttcagcatgatcctgtgctgtgccatccgtcggagccgagagat 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66880190 gattttcggcatgatcttcagcatgatcctgtgctgtgccatccgtcggagccgagagat 66880131
Query: 796 ggtctagagtcagcctcgcagccctgagcaggaaagtccacccctgaagactattggtca 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66880130 ggtctagagtcagcctcgcagccctgagcaggaaagtccacccctgaagactattggtca 66880071
Query: 856 tcttctcggggtcctgtttgtatttcttttggttttctttgccactaactttagtattca 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66880070 tcttctcggggtcctgtttgtatttcttttggttttctttgccactaactttagtattca 66880011
Query: 916 gtctgcatttctaaacaaaacnnnnnnnnngttattctatgtttatgtttgtaatgcttt 975
||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 66880010 gtctgcatttctaaacaaaacaaaaaaaaagttattctatgtttatgtttgtaatgcttt 66879951
Query: 976 attcaatattgatatttgtagttaaggggtttgggtttgctcgggtttatatttgtttgg 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66879950 attcaatattgatatttgtagttaaggggtttgggtttgctcgggtttatatttgtttgg 66879891
Query: 1036 tcatttgtttttgcttattatgtaaagcagaaatcctgcaatgaaaggtactatatttgc 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66879890 tcatttgtttttgcttattatgtaaagcagaaatcctgcaatgaaaggtactatatttgc 66879831
Query: 1096 tagactctagacaaaagatattgtatataaagagnnnnnnnnctttaaatagatnnnnnn 1155
|||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 66879830 tagactctagacaaaagatattgtatataaagagttttttttctttaaatagataaaaaa 66879771
Query: 1156 ntgtctatcaaatttaatcaggttgtaacttatgttaaagacaatttgatacataataaa 1215
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66879770 atgtctatcaaatttaatcaggttgtaacttatgttaaagacaatttgatacataataaa 66879711
Query: 1216 agatgatgacaacgtc 1231
||||||||||||||||
Sbjct: 66879710 agatgatgacaacgtc 66879695
Score = 841 bits (424), Expect = 0.0
Identities = 472/496 (95%)
Strand = Plus / Minus
Query: 736 gattttcggcatgatcttcagcatgatcctgtgctgtgccatccgtcggagccgagagat 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66976158 gattttcggcatgatcttcagcatgatcctgtgctgtgccatccgtcggagccgagagat 66976099
Query: 796 ggtctagagtcagcctcgcagccctgagcaggaaagtccacccctgaagactattggtca 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66976098 ggtctagagtcagcctcgcagccctgagcaggaaagtccacccctgaagactattggtca 66976039
Query: 856 tcttctcggggtcctgtttgtatttcttttggttttctttgccactaactttagtattca 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66976038 tcttctcggggtcctgtttgtatttcttttggttttctttgccactaactttagtattca 66975979
Query: 916 gtctgcatttctaaacaaaacnnnnnnnnngttattctatgtttatgtttgtaatgcttt 975
||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 66975978 gtctgcatttctaaacaaaacaaaaaaaaagttattctatgtttatgtttgtaatgcttt 66975919
Query: 976 attcaatattgatatttgtagttaaggggtttgggtttgctcgggtttatatttgtttgg 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66975918 attcaatattgatatttgtagttaaggggtttgggtttgctcgggtttatatttgtttgg 66975859
Query: 1036 tcatttgtttttgcttattatgtaaagcagaaatcctgcaatgaaaggtactatatttgc 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66975858 tcatttgtttttgcttattatgtaaagcagaaatcctgcaatgaaaggtactatatttgc 66975799
Query: 1096 tagactctagacaaaagatattgtatataaagagnnnnnnnnctttaaatagatnnnnnn 1155
|||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 66975798 tagactctagacaaaagatattgtatataaagagttttttttctttaaatagataaaaaa 66975739
Query: 1156 ntgtctatcaaatttaatcaggttgtaacttatgttaaagacaatttgatacataataaa 1215
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66975738 atgtctatcaaatttaatcaggttgtaacttatgttaaagacaatttgatacataataaa 66975679
Query: 1216 agatgatgacaacgtc 1231
||||||||||||||||
Sbjct: 66975678 agatgatgacaacgtc 66975663
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 1 gtgcagcccggaggcccgcccgcagccgcccgcacttcgctccgcagcccagtcccgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66919329 gtgcagcccggaggcccgcccgcagccgcccgcacttcgctccgcagcccagtcccgtgt 66919270
Query: 61 gtctcggccgcaagcgccctcgtcccgcacccgtccggcccaggccagtctagcccgcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66919269 gtctcggccgcaagcgccctcgtcccgcacccgtccggcccaggccagtctagcccgcac 66919210
Query: 121 catgccggtcaaaggaggcactaagtgtatcaaatacttgctcttcggatttaacttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66919209 catgccggtcaaaggaggcactaagtgtatcaaatacttgctcttcggatttaacttcat 66919150
Query: 181 cttctgg 187
|||||||
Sbjct: 66919149 cttctgg 66919143
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 461 caggtgatcaaagaagtccaggatttctacagggacacttacaacaagctgaagggcaag 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66883207 caggtgatcaaagaagtccaggatttctacagggacacttacaacaagctgaagggcaag 66883148
Query: 521 gacgacccccagcgggagactctgaaagccatccacta 558
||||||||||||||||||||||||||||||||||||||
Sbjct: 66883147 gacgacccccagcgggagactctgaaagccatccacta 66883110
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 461 caggtgatcaaagaagtccaggatttctacagggacacttacaacaagctgaagggcaag 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66979175 caggtgatcaaagaagtccaggatttctacagggacacttacaacaagctgaagggcaag 66979116
Query: 521 gacgacccccagcgggagactctgaaagccatccacta 558
||||||||||||||||||||||||||||||||||||||
Sbjct: 66979115 gacgacccccagcgggagactctgaaagccatccacta 66979078
Score = 192 bits (97), Expect = 3e-46
Identities = 103/105 (98%)
Strand = Plus / Minus
Query: 187 gctcgctgggattgcggtccttgccattggactatggctccgatttgactctcagaccaa 246
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66893075 gctcgctgggattgcagtccttgccattggactatggctccgatttgactctcagaccaa 66893016
Query: 247 gagcatcttcgagcaagaaaataataactctagcttctacacagg 291
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 66893015 gagcatcttcgagcaagaaaataataactccagcttctacacagg 66892971
Score = 192 bits (97), Expect = 3e-46
Identities = 103/105 (98%)
Strand = Plus / Minus
Query: 187 gctcgctgggattgcggtccttgccattggactatggctccgatttgactctcagaccaa 246
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66989043 gctcgctgggattgcagtccttgccattggactatggctccgatttgactctcagaccaa 66988984
Query: 247 gagcatcttcgagcaagaaaataataactctagcttctacacagg 291
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 66988983 gagcatcttcgagcaagaaaataataactccagcttctacacagg 66988939
Score = 184 bits (93), Expect = 8e-44
Identities = 99/101 (98%)
Strand = Plus / Minus
Query: 288 caggagtttatattctcattggagccggcgccctcatgatggtggtgggcttcctgggct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66885622 caggagtttatattctcattggagccggcgccctcatgatggtggtgggcttcctgggct 66885563
Query: 348 gctgcggggccgtgcaggagtcccagtgcatgctgggcttg 388
|||||||||| || |||||||||||||||||||||||||||
Sbjct: 66885562 gctgcggggcggtacaggagtcccagtgcatgctgggcttg 66885522
Score = 184 bits (93), Expect = 8e-44
Identities = 99/101 (98%)
Strand = Plus / Minus
Query: 288 caggagtttatattctcattggagccggcgccctcatgatggtggtgggcttcctgggct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66981590 caggagtttatattctcattggagccggcgccctcatgatggtggtgggcttcctgggct 66981531
Query: 348 gctgcggggccgtgcaggagtcccagtgcatgctgggcttg 388
|||||||||| || |||||||||||||||||||||||||||
Sbjct: 66981530 gctgcggggcggtacaggagtcccagtgcatgctgggcttg 66981490
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 562 gctggactgctgtggtttaatggggggagtggaacaacttctggcagacatctgccccca 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66882700 gctggactgctgtggtttaatggggggagtggaacaacttctggcagacatctgccccca 66882641
Query: 622 aaaggacgtactctcaagcctcccaatgaag 652
|||||||||||||||||||||||||||||||
Sbjct: 66882640 aaaggacgtactctcaagcctcccaatgaag 66882610
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 562 gctggactgctgtggtttaatggggggagtggaacaacttctggcagacatctgccccca 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66978668 gctggactgctgtggtttaatggggggagtggaacaacttctggcagacatctgccccca 66978609
Query: 622 aaaggacgtactctcaagcctcccaatgaag 652
|||||||||||||||||||||||||||||||
Sbjct: 66978608 aaaggacgtactctcaagcctcccaatgaag 66978578
Score = 165 bits (83), Expect = 7e-38
Identities = 86/87 (98%)
Strand = Plus / Minus
Query: 650 aagccctgccctgaggccatcaaagaggtcttccaaaacaagttccacatcattggcgcc 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66881985 aagccctgccctgaggccatcaaagaggtcttccaaaacaagttccacatcattggcgct 66881926
Query: 710 gtgggcattgggatcgccgtggtgatg 736
|||||||||||||||||||||||||||
Sbjct: 66881925 gtgggcattgggatcgccgtggtgatg 66881899
Score = 165 bits (83), Expect = 7e-38
Identities = 86/87 (98%)
Strand = Plus / Minus
Query: 650 aagccctgccctgaggccatcaaagaggtcttccaaaacaagttccacatcattggcgcc 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66977953 aagccctgccctgaggccatcaaagaggtcttccaaaacaagttccacatcattggcgct 66977894
Query: 710 gtgggcattgggatcgccgtggtgatg 736
|||||||||||||||||||||||||||
Sbjct: 66977893 gtgggcattgggatcgccgtggtgatg 66977867
Score = 155 bits (78), Expect = 7e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 388 gttctttggcttcctcttggtgatatttgccattgaaatagccgcggccatctggggata 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66884900 gttctttggcttcctcttggtgatatttgccattgaaatagccgcggccatctggggata 66884841
Query: 448 ttcccacaaggatcaggt 465
||||||||||||||||||
Sbjct: 66884840 ttcccacaaggatcaggt 66884823
Score = 155 bits (78), Expect = 7e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 388 gttctttggcttcctcttggtgatatttgccattgaaatagccgcggccatctggggata 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66980868 gttctttggcttcctcttggtgatatttgccattgaaatagccgcggccatctggggata 66980809
Query: 448 ttcccacaaggatcaggt 465
||||||||||||||||||
Sbjct: 66980808 ttcccacaaggatcaggt 66980791
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,683,269
Number of extensions: 558
Number of successful extensions: 558
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 19
Length of query: 1259
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1238
Effective length of database: 2,808,413,156
Effective search space: 3476815487128
Effective search space used: 3476815487128
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)