Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000668
(2090 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039525.1| GTPase IMAP family member 4 [Bos taurus]. 373 e-103
Alignment gi|NP_001071589.1| GTPase IMAP family member 4-like [Bos taurus]. 286 4e-77
Alignment gi|NP_001098504.1| GTPase, IMAP family member 7 [Bos taurus]. 191 2e-48
Alignment gi|NP_001039773.1| GTPase, IMAP family member 7 [Bos taurus]. 190 5e-48
Alignment gi|NP_001073726.1| GTPase, IMAP family member 7 [Bos taurus]. 185 1e-46
Alignment gi|NP_001029943.1| GTPase, IMAP family member 7 [Bos taurus]. 174 2e-43
Alignment gi|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like... 172 1e-42
Alignment gi|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like... 172 1e-42
Alignment gi|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like is... 172 1e-42
Alignment gi|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like... 172 1e-42
>ref|NP_001039525.1| GTPase IMAP family member 4 [Bos taurus].
Length = 319
Score = 373 bits (958), Expect = e-103
Identities = 194/312 (62%), Positives = 245/312 (78%), Gaps = 4/312 (1%)
Frame = +2
Query: 83 MAAQDPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSIT 262
MAAQ +P+TSHGL N RDSQLRLVLVGKTGAGKSATGNSIL ++VFPS SA SIT
Sbjct: 1 MAAQYLREPRTSHGLA--NPRDSQLRLVLVGKTGAGKSATGNSILREEVFPSSFSAVSIT 58
Query: 263 KHCEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRY 442
KHCEKG STWK REVV+VDTPG+FD EV + +T+KEI RCM+LTSPGPHALLLVIP+GRY
Sbjct: 59 KHCEKGSSTWKGREVVIVDTPGLFDTEVPDSETLKEITRCMVLTSPGPHALLLVIPVGRY 118
Query: 443 TPEEHKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRY 622
T E+ KA+ KILTMFGERA + +ILLFT KDDL+G DF +YLK A ++REL+ +FR+RY
Sbjct: 119 TLEDQKATEKILTMFGERAREHIILLFTWKDDLKGMDFRDYLKHAPTAIRELIREFRDRY 178
Query: 623 CVVNNRATGEERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQK---VIEENRRA 793
CV NN+ATG E++ QR+QLL+LV VV +C RYYTN LY+K+EE IQK V++E RA
Sbjct: 179 CVFNNKATGAEQENQREQLLALVQDVVDKCNGRYYTNSLYQKTEEEIQKQIQVLQEYYRA 238
Query: 794 ELEREKAKGRQECEEKPKSQQDELERKNQRTQMEREVEERQASWDQWQEDARDKI-DLNE 970
ELER KA+ +QE EE+ + +DELE++ ++ +MER++ E +A W Q+ ARD + N+
Sbjct: 239 ELERVKAQIKQELEEEIRKLKDELEQQKRKVEMERQLAEMEAHWVSRQQTARDDVLRQNK 298
Query: 971 ILETILNVLKIA 1006
I E I +L++A
Sbjct: 299 IFEIIYTLLQVA 310
>ref|NP_001071589.1| GTPase IMAP family member 4-like [Bos taurus].
Length = 246
Score = 286 bits (733), Expect = 4e-77
Identities = 147/203 (72%), Positives = 168/203 (82%)
Frame = +2
Query: 83 MAAQDPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSIT 262
MAAQ S+P+ SHGL N DSQLRLVLVGKTGAGKSATGNSIL ++VF S SA SIT
Sbjct: 1 MAAQYLSEPRASHGLT--NPGDSQLRLVLVGKTGAGKSATGNSILREEVFLSSFSAVSIT 58
Query: 263 KHCEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRY 442
KHC+KG STWK REVVVVDTPG+FD E + DTVKEI RCM+LTSPGPH LLLVIPLGRY
Sbjct: 59 KHCKKGSSTWKGREVVVVDTPGLFDTEAPDADTVKEITRCMVLTSPGPHTLLLVIPLGRY 118
Query: 443 TPEEHKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRY 622
TPE +A+ KILTMFGERA + MILLFTRKDDLEG DF EYLK+A +++EL+ KFR+RY
Sbjct: 119 TPEGQQATEKILTMFGERAREHMILLFTRKDDLEGMDFCEYLKQAPTAIQELIHKFRDRY 178
Query: 623 CVVNNRATGEERKRQRDQLLSLV 691
CV NN+ATG E++ QR+QLL LV
Sbjct: 179 CVFNNKATGAEQENQREQLLVLV 201
>ref|NP_001098504.1| GTPase, IMAP family member 7 [Bos taurus].
Length = 297
Score = 191 bits (486), Expect = 2e-48
Identities = 107/290 (36%), Positives = 177/290 (61%), Gaps = 5/290 (1%)
Frame = +2
Query: 143 RDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDT 322
+D LR++LVGK G GKSAT N+ILG KVF S I+A+++TK C+K WK RE++VVDT
Sbjct: 5 QDISLRILLVGKIGNGKSATANTILGGKVFESKIAAEAVTKTCQKASRKWKGRELLVVDT 64
Query: 323 PGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAM 502
PG+FD + T +EI RC++ +SPGPHA++LV+ L RYT EE + + + +FGE AM
Sbjct: 65 PGLFDTKDSLNTTCREISRCVLASSPGPHAIILVLRLRRYTQEEQQTVALVKNLFGEAAM 124
Query: 503 QRMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRYCVVNNRATGE--ERKRQRDQ 676
+ MI+LFT KD+LE ++LK ++R L+ + R C ++N E E++ Q +
Sbjct: 125 KYMIILFTHKDELEDQSLSDFLKNQDVNLRSLVKECGERCCAISNSGNTEQAEKEAQVQE 184
Query: 677 LLSLVVRVVKECGERYYTNYLYEKSEEVIQK---VIEENRRAELEREKAKGRQECEEKPK 847
L+ L+ ++V+ Y+++ +Y+ + E ++K V+ + +LE E K +EC + +
Sbjct: 185 LVELIDKMVQNNQGTYFSDPIYKDTLERLRKLEEVLSKRYIDQLEMEIQKVEKECAQACE 244
Query: 848 SQQDELERKNQRTQMEREVEERQASWDQWQEDARDKIDLNEILETILNVL 997
E E + + +ME E + R +++A+D + + + + I+ VL
Sbjct: 245 KIMQEKEGEIELLKMEYEKKLRNI-----RKEAQDNV-FSHVFDDIMKVL 288
>ref|NP_001039773.1| GTPase, IMAP family member 7 [Bos taurus].
Length = 297
Score = 190 bits (482), Expect = 5e-48
Identities = 106/281 (37%), Positives = 169/281 (60%), Gaps = 9/281 (3%)
Frame = +2
Query: 146 DSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTP 325
++ LR+VLVGKTG+GKSAT N+ILG KVF S I+A+++TK C+K WK RE++VVDTP
Sbjct: 6 NNALRIVLVGKTGSGKSATANTILGYKVFESKIAAEAVTKTCQKASREWKGRELLVVDTP 65
Query: 326 GIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQ 505
G+FD + T +EI C++ + PGPHA++LV+ L RYT EE + + I +FGE AM+
Sbjct: 66 GLFDTKDSLNTTCREISLCVLASCPGPHAIVLVLRLDRYTQEEQQTVALIKALFGEAAME 125
Query: 506 RMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRYCVVNN--RATGEERKRQRDQL 679
MI+LFTRKD+LE ++L A ++R L+ + R C ++N E++ Q +L
Sbjct: 126 YMIILFTRKDELEDQSLSDFLDNADVNLRSLLQECGERCCAISNSKNTNQAEKEAQIQEL 185
Query: 680 LSLVVRVVKECGERYYTNYLYE-------KSEEVIQKVIEENRRAELEREKAKGRQECEE 838
+ L+ +V+ Y+ + +Y+ + EEV++K+ ++ + ++++ + K Q
Sbjct: 186 VELIENMVQNNQGTYFFDAIYKNTVERLRRREEVLKKIYDDQLKGDIQKVEVKYAQAY-- 243
Query: 839 KPKSQQDELERKNQRTQMEREVEERQASWDQWQEDARDKID 961
K + E ERK + +ME E + R + RDK D
Sbjct: 244 --KKRIQEKERKIKLLKMEYEEKLRCVREEAQNSIFRDKHD 282
>ref|NP_001073726.1| GTPase, IMAP family member 7 [Bos taurus].
Length = 293
Score = 185 bits (470), Expect = 1e-46
Identities = 103/287 (35%), Positives = 175/287 (60%), Gaps = 2/287 (0%)
Frame = +2
Query: 146 DSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTP 325
+S LR+VLVGKTG+GKSAT N+ILG+KVF S I+A+++TK C+K WK RE++VVDTP
Sbjct: 6 NSTLRIVLVGKTGSGKSATANTILGEKVFKSRIAAEAVTKTCQKAVREWKGRELLVVDTP 65
Query: 326 GIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQ 505
G+FD + T +EI +C++ + PGPHA++LV+ LGRYT EE + + + +FG+ AM+
Sbjct: 66 GLFDTKETLNTTCREISQCVLASCPGPHAIVLVLRLGRYTQEEQQTVALVKNLFGKAAMK 125
Query: 506 RMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRYCVVNNRATGE--ERKRQRDQL 679
MI+LFTR+D+L ++LK A ++R L+ + +R C ++N E E++ Q +L
Sbjct: 126 YMIILFTRRDELGDQSLSDFLKYADVNLRSLLQECGDRCCAISNSMNTEQAEKEAQVQEL 185
Query: 680 LSLVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAELEREKAKGRQECEEKPKSQQD 859
+ L+ ++V+ Y+++ +Y K I++ R + E K E + K K +
Sbjct: 186 VELIDKMVQNNQGAYFSDPIY--------KDIDQKLRQQEEHLKKVYVDELQNKIKLVEK 237
Query: 860 ELERKNQRTQMEREVEERQASWDQWQEDARDKIDLNEILETILNVLK 1000
E K Q + E+++ ++ ++ R + ++N I + N+++
Sbjct: 238 EYAHK-QPAEKEKQIMLLMQKHEERMKNIRGEAEMN-IFQVAFNMIR 282
>ref|NP_001029943.1| GTPase, IMAP family member 7 [Bos taurus].
Length = 294
Score = 174 bits (442), Expect = 2e-43
Identities = 97/275 (35%), Positives = 164/275 (59%), Gaps = 13/275 (4%)
Frame = +2
Query: 146 DSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTP 325
++ LR+VLVGKTG+GKSAT N+ILG K F S ++A ++TK C+K WK RE++VVDTP
Sbjct: 6 NNALRIVLVGKTGSGKSATANTILGYKKFESKMAANAVTKTCQKASREWKGRELLVVDTP 65
Query: 326 GIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQ 505
G+FD + T +EI RC++ + PGPHA++LV+ LGR+T EE + + +FG+ AM+
Sbjct: 66 GLFDTKDSLNTTCREISRCVLASCPGPHAIVLVLRLGRHTQEEQQTVELVKNLFGKAAMK 125
Query: 506 RMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRYCVVNNRATGE--ERKRQRDQL 679
MI+LFT K++LE +L++++ +++ L+ + +R C +N E E++ Q +L
Sbjct: 126 YMIILFTCKEELENQSLSNFLEDSNGNLQSLLQECGDRCCAFSNSKNTEQAEKEAQVQEL 185
Query: 680 LSLVVRVVKECGERYYTNYLYEKS-------EEVIQKVIEENRRAELEREKAKGRQECEE 838
+ L+ +V+ Y+++ +Y+++ EE + K + ++E+ + + Q E
Sbjct: 186 VELIDEMVQNNQGAYFSDPIYKETDQELKQQEEYLMKSYADTFNKQIEQVEVEYAQNPSE 245
Query: 839 ----KPKSQQDELERKNQRTQMEREVEERQASWDQ 931
K KS DE + + E E QA +D+
Sbjct: 246 EKMKKIKSITDEYNEQMMNVREEAEKRILQAVFDK 280
>ref|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 321
Score = 172 bits (435), Expect = 1e-42
Identities = 86/219 (39%), Positives = 137/219 (62%), Gaps = 1/219 (0%)
Frame = +2
Query: 113 TSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTW 292
T G N S LR++LVGKTG+G+SATGNSIL + +F S + A+++T+ C++ W
Sbjct: 28 TGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQAVTRKCQRATGMW 87
Query: 293 KEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSK 472
R +VVVDTP IF+ E Q+++ + I C +L+ PGPH LLLV LGR+T ++ A ++
Sbjct: 88 NGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTR 147
Query: 473 ILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASE-SVRELMGKFRNRYCVVNNRATG 649
+ +FG A + M++LFT K+DL G EY+ +R L+ + RYC NNRA G
Sbjct: 148 VKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALG 207
Query: 650 EERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQ 766
+E++ Q QL++++ + +E + TN L+ ++ ++Q
Sbjct: 208 DEQREQLAQLMAVIEGLEQEHQGVFLTNELFSDAQMLLQ 246
>ref|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 307
Score = 172 bits (435), Expect = 1e-42
Identities = 86/219 (39%), Positives = 137/219 (62%), Gaps = 1/219 (0%)
Frame = +2
Query: 113 TSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTW 292
T G N S LR++LVGKTG+G+SATGNSIL + +F S + A+++T+ C++ W
Sbjct: 14 TGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQAVTRKCQRATGMW 73
Query: 293 KEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSK 472
R +VVVDTP IF+ E Q+++ + I C +L+ PGPH LLLV LGR+T ++ A ++
Sbjct: 74 NGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTR 133
Query: 473 ILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASE-SVRELMGKFRNRYCVVNNRATG 649
+ +FG A + M++LFT K+DL G EY+ +R L+ + RYC NNRA G
Sbjct: 134 VKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALG 193
Query: 650 EERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQ 766
+E++ Q QL++++ + +E + TN L+ ++ ++Q
Sbjct: 194 DEQREQLAQLMAVIEGLEQEHQGVFLTNELFSDAQMLLQ 232
>ref|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 321
Score = 172 bits (435), Expect = 1e-42
Identities = 86/219 (39%), Positives = 137/219 (62%), Gaps = 1/219 (0%)
Frame = +2
Query: 113 TSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTW 292
T G N S LR++LVGKTG+G+SATGNSIL + +F S + A+++T+ C++ W
Sbjct: 28 TGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQAVTRKCQRATGMW 87
Query: 293 KEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSK 472
R +VVVDTP IF+ E Q+++ + I C +L+ PGPH LLLV LGR+T ++ A ++
Sbjct: 88 NGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTR 147
Query: 473 ILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASE-SVRELMGKFRNRYCVVNNRATG 649
+ +FG A + M++LFT K+DL G EY+ +R L+ + RYC NNRA G
Sbjct: 148 VKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALG 207
Query: 650 EERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQ 766
+E++ Q QL++++ + +E + TN L+ ++ ++Q
Sbjct: 208 DEQREQLAQLMAVIEGLEQEHQGVFLTNELFSDAQMLLQ 246
>ref|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like [Bos taurus].
Length = 307
Score = 172 bits (435), Expect = 1e-42
Identities = 86/219 (39%), Positives = 137/219 (62%), Gaps = 1/219 (0%)
Frame = +2
Query: 113 TSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTW 292
T G N S LR++LVGKTG+G+SATGNSIL + +F S + A+++T+ C++ W
Sbjct: 14 TGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQAVTRKCQRATGMW 73
Query: 293 KEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSK 472
R +VVVDTP IF+ E Q+++ + I C +L+ PGPH LLLV LGR+T ++ A ++
Sbjct: 74 NGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTR 133
Query: 473 ILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASE-SVRELMGKFRNRYCVVNNRATG 649
+ +FG A + M++LFT K+DL G EY+ +R L+ + RYC NNRA G
Sbjct: 134 VKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALG 193
Query: 650 EERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQ 766
+E++ Q QL++++ + +E + TN L+ ++ ++Q
Sbjct: 194 DEQREQLAQLMAVIEGLEQEHQGVFLTNELFSDAQMLLQ 232
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 66,859,674
Number of extensions: 2019383
Number of successful extensions: 8468
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 7984
Number of HSP's successfully gapped: 27
Length of query: 696
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 587
Effective length of database: 14,074,782
Effective search space: 8261897034
Effective search space used: 8261897034
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000668
(2090 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532756.2| PREDICTED: similar to GTPase, IMAP family membe... 338 2e-92
Alignment gi|XP_853560.1| PREDICTED: similar to GTPase, IMAP family membe... 203 5e-52
Alignment gi|XP_539913.2| PREDICTED: similar to GTPase, IMAP family membe... 182 1e-45
Alignment gi|XP_539911.2| PREDICTED: similar to GTPase, IMAP family membe... 165 2e-40
Alignment gi|XP_853549.1| PREDICTED: similar to GTPase, IMAP family membe... 151 3e-36
Alignment gi|XP_539912.2| PREDICTED: similar to GTPase, IMAP family membe... 135 1e-31
Alignment gi|XP_853579.1| PREDICTED: similar to GTPase, IMAP family membe... 116 1e-25
Alignment gi|XP_537749.2| PREDICTED: similar to Era G-protein-like 1 [Can... 56 1e-07
>ref|XP_532756.2| PREDICTED: similar to GTPase, IMAP family member 4
(Immunity-associated protein 4) (Immunity-associated
nucleotide 1 protein) (hIAN1) [Canis familiaris].
Length = 330
Score = 338 bits (866), Expect = 2e-92
Identities = 180/317 (56%), Positives = 236/317 (74%), Gaps = 4/317 (1%)
Frame = +2
Query: 68 GVQTTMAAQDPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGIS 247
G T Q + K GL Q+ RDSQLRLVLVGKTGAGKSATGNSILG+KVF S I+
Sbjct: 3 GCDTGFLMQKSASFKGYAGLGSQDCRDSQLRLVLVGKTGAGKSATGNSILGEKVFHSSIA 62
Query: 248 AKSITKHCEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVI 427
AKS+TK C+KG S W RE++VVDTPGIFD EVQ+ DT +EI C++LTSPGPHALLLV+
Sbjct: 63 AKSVTKVCKKGSSRWHGRELIVVDTPGIFDTEVQDADTCREIAHCILLTSPGPHALLLVV 122
Query: 428 PLGRYTPEEHKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASESVRELMGK 607
PLGRYT EE KA KIL MFG RA + MILLFTRKDDL+G F +YLK+ASE ++EL+
Sbjct: 123 PLGRYTQEERKAMEKILQMFGPRARRYMILLFTRKDDLDGMHFQDYLKDASEDIQELVDM 182
Query: 608 FRNRYCVVNNRATGEERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQK---VIE 778
FR+RYCV NNRATG E++ QR QLL+LV RVV E YTN +++K+EE IQK V++
Sbjct: 183 FRDRYCVFNNRATGTEQEAQRMQLLTLVQRVVMENEGGCYTNKMFQKAEEEIQKKIEVLQ 242
Query: 779 ENRRAELEREKAKGRQECEEKPKSQQDELERKNQRTQMEREVEERQASWDQWQEDARDKI 958
E RAELER++ + R+E EK + +D+LE++ ++ +ME ++ ER+A + Q++AR+++
Sbjct: 243 EFYRAELERQRVQIREEFGEKIRMLEDKLEQQKRQEEMEMKLAEREAFYALKQQNARNEV 302
Query: 959 DLNE-ILETILNVLKIA 1006
+ IL+ I+ VL++A
Sbjct: 303 ESESGILDIIMKVLEMA 319
>ref|XP_853560.1| PREDICTED: similar to GTPase, IMAP family member 7 [Canis
familiaris].
Length = 291
Score = 203 bits (517), Expect = 5e-52
Identities = 109/267 (40%), Positives = 174/267 (65%), Gaps = 13/267 (4%)
Frame = +2
Query: 143 RDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDT 322
+D+ LR+VLVGKTG+GKSAT N+ILG++VF S I+A +ITK C+K W+ R+++VVDT
Sbjct: 5 QDNTLRIVLVGKTGSGKSATANTILGRQVFDSRIAAHAITKECQKASREWEGRKLLVVDT 64
Query: 323 PGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAM 502
PG+FD + + T KEI RC+I + PGPHA+LLV+ LGRYT EE K + I +FG+ A+
Sbjct: 65 PGLFDTKETLDTTCKEISRCVISSCPGPHAILLVLQLGRYTEEEQKTVALIKAVFGKPAL 124
Query: 503 QRMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRYCVVNNRATGEERKRQRDQLL 682
+ MI+LFTRKD+LE ++++ A ++ + + +RYC NNRA E++ Q +L+
Sbjct: 125 KHMIMLFTRKDNLEDQSLSDFIESADVKLKNITKECGDRYCAFNNRAKEAEKEAQVQELV 184
Query: 683 SLVVRVVKECGERYYTNYLYEKSE-------EVIQKVIEENRRAE---LEREKAK-GRQE 829
L+ ++V+ G Y+++ +Y+ +E E+++K+ + E +E+E A ++E
Sbjct: 185 ELIEQMVQSNGGAYFSDDIYKDTEERLKRKAEILKKIYTDQLNKEIKLIEKEYAHLSQKE 244
Query: 830 CEEKPKSQQDELER--KNQRTQMEREV 904
EEK K + + E KN R + E+ +
Sbjct: 245 REEKIKVLRMKYEEQIKNLREEAEKGI 271
>ref|XP_539913.2| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 581
Score = 182 bits (461), Expect = 1e-45
Identities = 88/201 (43%), Positives = 136/201 (67%), Gaps = 1/201 (0%)
Frame = +2
Query: 155 LRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGIF 334
LR++LVGKTG+G+SATGNSIL + VF S + + +TK C+ TW R ++VVDTP +F
Sbjct: 300 LRIILVGKTGSGRSATGNSILCQPVFESRLGNQPVTKTCQGETGTWNGRSILVVDTPSLF 359
Query: 335 DPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQRMI 514
+ E Q ++ K I C +L++PGPH LLLV PLGR+T ++ A ++ +FG AM+ +
Sbjct: 360 EAEAQTQELYKAIGDCYLLSAPGPHVLLLVTPLGRFTAQDAVAVRRVKEVFGAGAMRHAV 419
Query: 515 LLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLSLV 691
+LFT K+DL G +YL + + S+R L+ + RYC NNRATGEE++ Q +L+++V
Sbjct: 420 VLFTHKEDLAGESLDDYLADTDNHSLRSLVQECGRRYCAFNNRATGEEQREQLARLMAVV 479
Query: 692 VRVVKECGERYYTNYLYEKSE 754
R+ +E G +Y+N L+ +++
Sbjct: 480 ERLERETGGAFYSNDLFFQAQ 500
Score = 174 bits (442), Expect = 2e-43
Identities = 85/207 (41%), Positives = 135/207 (65%), Gaps = 1/207 (0%)
Frame = +2
Query: 125 LRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKERE 304
++ Q R+S+LR++LVGKTG GKSATGNSIL K+ F S ++A+ TK C + + +W ERE
Sbjct: 13 IKNQGARESKLRIILVGKTGTGKSATGNSILRKQAFESRLAAQPFTKTCSESQGSWGERE 72
Query: 305 VVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTM 484
+V++DTP +F + KE+ RC +L++PGPH LLLV LGR+T ++ + ++ +
Sbjct: 73 MVIIDTPDMFSERDHSDSLYKEVERCYLLSAPGPHVLLLVTQLGRFTTQDQQVVQRMKEI 132
Query: 485 FGERAMQRMILLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYCVVNNRATGEERK 661
FGE M+ I+LFT K+DL+G +Y+ + ++++ +L+ R C +N ATG +R
Sbjct: 133 FGEDVMRHTIVLFTHKEDLKGESLTDYILDIDNKALCKLVAACGGRVCAFDNHATGSDRD 192
Query: 662 RQRDQLLSLVVRVVKECGERYYTNYLY 742
Q +L++L+ +V E +YTN LY
Sbjct: 193 DQVKELMALMEDLVLERRGEHYTNGLY 219
>ref|XP_539911.2| PREDICTED: similar to GTPase, IMAP family member 1 [Canis
familiaris].
Length = 373
Score = 165 bits (417), Expect = 2e-40
Identities = 89/225 (39%), Positives = 135/225 (60%), Gaps = 2/225 (0%)
Frame = +2
Query: 152 QLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGI 331
+L L+LVG+TGAGKSATGNSILG + FPS ++A +T+ C G W V V DTP +
Sbjct: 89 RLGLILVGRTGAGKSATGNSILGHRSFPSRLAAAPVTRTCALGSRRWAGWRVEVTDTPDL 148
Query: 332 FDPEVQEEDT-VKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQR 508
F E + D E RC +L++PGPHALLLV LGR+T ++ +A + +FG + R
Sbjct: 149 FSAEGRRADRGCAERGRCYLLSAPGPHALLLVTQLGRFTAQDEQAVRGVRELFGPGVLAR 208
Query: 509 MILLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLS 685
+++FTR++DL G H+Y++ + ++R L+ + R C ++NRA G ER+ Q +LL+
Sbjct: 209 AVVVFTRREDLAGASPHDYVRATDNRALRALVAECGGRVCALDNRAEGAEREAQAGELLA 268
Query: 686 LVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAELEREKAKG 820
L R+ +E + +TN +Y + E+ + R ER A G
Sbjct: 269 LAARLAREHADAPFTNDVYRLAAELRGAAPDGGLRRVCERLAAGG 313
>ref|XP_853549.1| PREDICTED: similar to GTPase, IMAP family member 8 [Canis
familiaris].
Length = 723
Score = 151 bits (381), Expect = 3e-36
Identities = 82/195 (42%), Positives = 120/195 (61%)
Frame = +2
Query: 152 QLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGI 331
+LRL+L+G++G GKSATGN+ILG+ +F S S + +TK C++ E +VV+DTP +
Sbjct: 71 ELRLLLLGRSGVGKSATGNTILGRSMFVSKFSNQMVTKVCQRESRATGEGTLVVIDTPYL 130
Query: 332 FDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQRM 511
F ED + I RC+ L +P H LLLVI +G Y E+ + + +FG A + M
Sbjct: 131 FSSMSPAEDKQRNIERCLELCAPSLHVLLLVIAIGCYELEDKEVVCGVQEVFGAEARRYM 190
Query: 512 ILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLSLV 691
I++FTRKDDLEG +Y+ E +S+REL+ RYC +NN+ + EER Q +LL +V
Sbjct: 191 IVVFTRKDDLEGDSVQDYI-EGLDSLRELVENCGGRYCALNNKGSEEERVGQVRELLGMV 249
Query: 692 VRVVKECGERYYTNY 736
R+V E G Y +
Sbjct: 250 QRLVGENGGPYIMKF 264
Score = 146 bits (368), Expect = 9e-35
Identities = 86/232 (37%), Positives = 133/232 (57%), Gaps = 6/232 (2%)
Frame = +2
Query: 44 KEQDPHFLGVQTTMAAQDPSKPKTSHGLRKQ------NLRDSQLRLVLVGKTGAGKSATG 205
+ Q FL A+Q KP L++Q N +L+++LVGK GAGKSA G
Sbjct: 265 RNQGGGFLDSVKGAASQKEDKPHGGGELQRQATGYEPNPGIHELKVLLVGKRGAGKSAAG 324
Query: 206 NSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCM 385
NS+LGK+VF + S +S+T+ W+ER VV++DTP I +D E+ R +
Sbjct: 325 NSLLGKRVFETKFSEESVTRRFVLESRIWRERRVVIIDTPDISS----SKDIKAELRRHV 380
Query: 386 ILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEY 565
GPHA LLV PLG ++ ++ + FG++ ++ +I+LFTRK+DL D +
Sbjct: 381 F---GGPHAFLLVTPLGSFSKKDEVVLDTLQASFGDKFVEYLIILFTRKEDLGDQDLEMF 437
Query: 566 LKEASESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLSLVVRVVKECGER 721
LK S ++ +L+ K ++RYCV + R T EE + Q ++LL VV +V++ G+R
Sbjct: 438 LKSRSTALCKLIKKCKDRYCVFSYRVTREEEQHQAEELLQTVVSLVQQHGDR 489
Score = 128 bits (321), Expect = 2e-29
Identities = 83/242 (34%), Positives = 133/242 (54%), Gaps = 5/242 (2%)
Frame = +2
Query: 119 HGLRKQNLRDSQ-LRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWK 295
HG R R+ + L LVLVGK+G GKSATGN+ILG+ F S A+ +T+ C+ + W
Sbjct: 486 HGDRPCTFREQEPLSLVLVGKSGPGKSATGNTILGRPDFLSQFRAQPVTRTCQSSRRLWG 545
Query: 296 EREVVVVDTPGI---FDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKAS 466
++EVVVVD P + E +E+ RC G L+LV LG +T E+ +A
Sbjct: 546 QQEVVVVDMPSLCLMASAEGGPSQLEEEVRRCWSCCK-GNKILVLVFQLGWFTQEDKRAV 604
Query: 467 SKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYCVVNNRA 643
++ T+FGE ++ I+LFTRK+DLE D +Y+K A + +++ ++ + R C NN+
Sbjct: 605 KELETIFGEEVLKYTIVLFTRKEDLE-VDIADYIKNAENRTLQNIIKRCGGRICAFNNKE 663
Query: 644 TGEERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAELEREKAKGR 823
TG+ R+ Q LL++ ++++ G + Y + E I K I+ + + K
Sbjct: 664 TGQAREDQAAVLLTMANQLIESHG-----GHGYPQKWENISKSIKNGQDKHKPKHLLKNL 718
Query: 824 QE 829
+E
Sbjct: 719 KE 720
>ref|XP_539912.2| PREDICTED: similar to GTPase, IMAP family member 6 isoform 1 [Canis
familiaris].
Length = 314
Score = 135 bits (341), Expect = 1e-31
Identities = 66/159 (41%), Positives = 100/159 (62%)
Frame = +2
Query: 95 DPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCE 274
DP +P GL + +LRL+LVGK+G+GKSATGNSILG++ FPS +S + +T+ +
Sbjct: 79 DP-RPGILGGLWEAPRTPQKLRLLLVGKSGSGKSATGNSILGRREFPSRLSPQPVTRDLQ 137
Query: 275 KGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEE 454
+G W RE+ V+DTP + P+ E + IC + ++PGPHA+LLV LGR+T E+
Sbjct: 138 RGSGAWAGRELEVIDTPDLLSPQAGPEAAARAICEAVAFSAPGPHAVLLVTQLGRFTEED 197
Query: 455 HKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLK 571
+A + FG + +L+FTR++DL G EY++
Sbjct: 198 RQAVRGLQEAFGVGVLAHTVLVFTRREDLGGGSLEEYVR 236
>ref|XP_853579.1| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 298
Score = 116 bits (290), Expect = 1e-25
Identities = 67/199 (33%), Positives = 114/199 (57%), Gaps = 1/199 (0%)
Frame = +2
Query: 161 LVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGIFDP 340
LV+V G K T + P+G+ ++ C++ +R++ + PG
Sbjct: 52 LVIVLGVGTPKLVTSGE---QHPLPAGVPVQAGEPACDQNVPGG-DRDLERKEHPG--GR 105
Query: 341 EVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQRMILL 520
Q ++ K I C +L++PGPH LLLV PLGR+T ++ A ++ +FG AM+ ++L
Sbjct: 106 HAQTQELYKAIGDCYLLSAPGPHVLLLVTPLGRFTAQDAVAVRRVKEVFGAGAMRHAVVL 165
Query: 521 FTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLSLVVR 697
FT K+DL G +YL + + S+R L+ + RYC NNRATGEE++ Q +L+++V R
Sbjct: 166 FTHKEDLAGESLDDYLADTDNHSLRSLVQECGRRYCAFNNRATGEEQREQLARLMAVVER 225
Query: 698 VVKECGERYYTNYLYEKSE 754
+ +E G +Y+N L+ +++
Sbjct: 226 LERETGGAFYSNDLFFQAQ 244
>ref|XP_537749.2| PREDICTED: similar to Era G-protein-like 1 [Canis familiaris].
Length = 559
Score = 56.2 bits (134), Expect = 1e-07
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = +2
Query: 155 LRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEK-GKSTWKEREVVVVDTPGI 331
LR+VL+G AGKS N +LG+KVFP +S K T C+ G T +E +V+++DTPG+
Sbjct: 236 LRVVLLGAPNAGKSTLSNQLLGRKVFP--VSKKVHTTRCQALGVITEEEAQVILLDTPGL 293
Query: 332 FDPEVQE 352
P Q+
Sbjct: 294 ISPAKQK 300
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 68,278,133
Number of extensions: 1794571
Number of successful extensions: 9399
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8799
Number of HSP's successfully gapped: 11
Length of query: 696
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 586
Effective length of database: 15,207,544
Effective search space: 8911620784
Effective search space used: 8911620784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000668
(2090 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens]. 347 3e-95
Alignment gi|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens]. 199 6e-51
Alignment gi|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens]. 181 2e-45
Alignment gi|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens]. 175 2e-43
Alignment gi|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens]. 175 2e-43
Alignment gi|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens]. 169 7e-42
Alignment gi|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens]. 169 1e-41
Alignment gi|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens]. 151 3e-36
Alignment gi|NP_005693.1| GTPase Era, mitochondrial [Homo sapiens]. 62 3e-09
Alignment gi|NP_001182067.1| GTPase IMAP family member-like [Homo sapiens]. 60 6e-09
>ref|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens].
Length = 329
Score = 347 bits (889), Expect = 3e-95
Identities = 183/318 (57%), Positives = 240/318 (75%), Gaps = 10/318 (3%)
Frame = +2
Query: 83 MAAQ------DPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGI 244
MAAQ +PS P S+G +Q R+SQLR+VLVGKTGAGKSATGNSILG+KVF SG
Sbjct: 1 MAAQYGSMSFNPSTPGASYGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGT 60
Query: 245 SAKSITKHCEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLV 424
+AKSITK CEK S+WKE E+VVVDTPGIFD EV +T KEI RC++LTSPGPHALLLV
Sbjct: 61 AAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLV 120
Query: 425 IPLGRYTPEEHKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASESVRELMG 604
+PLGRYT EEHKA+ KIL MFGERA MIL+FTRKDDL T+ H+YL+EA E +++LM
Sbjct: 121 VPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 180
Query: 605 KFRNRYCVVNNRATGEERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQK---VI 775
F +RYC +NN+ATG E++ QR QLL L+ RVV+E E YTN +Y+++EE IQK +
Sbjct: 181 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQTQAM 240
Query: 776 EENRRAELEREKAKGRQECEEKPKSQQDELERKNQRTQMEREVEERQASWDQWQEDARDK 955
+E R ELEREKA+ R+E EEK + +D++E++ ++ QME+++ E++A + Q+ AR +
Sbjct: 241 QELHRVELEREKARIREEYEEKIRKLEDKVEQEKRKKQMEKKLAEQEAHYAVRQQRARTE 300
Query: 956 IDLNE-ILETILNVLKIA 1006
++ + ILE I+ L+IA
Sbjct: 301 VESKDGILELIMTALQIA 318
>ref|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens].
Length = 300
Score = 199 bits (507), Expect = 6e-51
Identities = 105/268 (39%), Positives = 177/268 (66%), Gaps = 15/268 (5%)
Frame = +2
Query: 146 DSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTP 325
D LR+VLVGKTG+GKSAT N+ILG+++F S I+A+++TK+C+K W+ R+++VVDTP
Sbjct: 6 DRSLRIVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQGRDLLVVDTP 65
Query: 326 GIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQ 505
G+FD + + T KEI RC+I + PGPHA++LV+ LGRYT EE K + I +FG+ AM+
Sbjct: 66 GLFDTKESLDTTCKEISRCIISSCPGPHAIVLVLLLGRYTEEEQKTVALIKAVFGKSAMK 125
Query: 506 RMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRYCVVNN--RATGEERKRQRDQL 679
M++LFTRK++LEG FH+++ +A ++ ++ + NR C +N + + E++ Q +L
Sbjct: 126 HMVILFTRKEELEGQSFHDFIADADVGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQEL 185
Query: 680 LSLVVRVVKECGE-RYYTNYLY-------EKSEEVIQKVIEENRRAEL---EREKAKGRQ 826
+ L+ ++V +C E Y+++ +Y ++ EEV++K+ + E+ E +K K +
Sbjct: 186 VELIEKMV-QCNEGAYFSDDIYKDTEERLKQREEVLRKIYTDQLNEEIKLVEEDKHKSEE 244
Query: 827 ECEEKPKSQQDELER--KNQRTQMEREV 904
E E++ K + + + KN R + ER +
Sbjct: 245 EKEKEIKLLKLKYDEKIKNIREEAERNI 272
>ref|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens].
Length = 306
Score = 181 bits (459), Expect = 2e-45
Identities = 98/230 (42%), Positives = 147/230 (63%), Gaps = 2/230 (0%)
Frame = +2
Query: 134 QNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVV 313
Q+ ++S RL+LVG+TGAGKSATGNSILG++ F S + A S+T+ C G W + V V
Sbjct: 21 QSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEV 80
Query: 314 VDTPGIFDPEVQEEDT-VKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFG 490
VDTP IF +V + D +E C +L++PGPHALLLV LGR+T ++ +A ++ MFG
Sbjct: 81 VDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG 140
Query: 491 ERAMQRMILLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYCVVNNRATGEERKRQ 667
E ++ M+++FTRK+DL G H+Y+ + ++REL+ + R C +NRATG E++ Q
Sbjct: 141 EDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQ 200
Query: 668 RDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAELEREKAK 817
+QLL +V +V E +Y+N +YE ++ + EE R ER A+
Sbjct: 201 VEQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPEERLRRVAERVAAR 250
>ref|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens].
Length = 511
Score = 175 bits (443), Expect = 2e-43
Identities = 94/258 (36%), Positives = 158/258 (61%), Gaps = 1/258 (0%)
Frame = +2
Query: 155 LRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGIF 334
LR++LVGKTG GKSATGNSILG+ VF S + A+S+T+ C+ TW R+V+VVDTP IF
Sbjct: 232 LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDTPSIF 291
Query: 335 DPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQRMI 514
+ + ++ K I C +L++PGPH LLLVI LGR+T ++ A K+ +FG AM+ ++
Sbjct: 292 ESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMRHVV 351
Query: 515 LLFTRKDDLEGTDFHEYLKEASE-SVRELMGKFRNRYCVVNNRATGEERKRQRDQLLSLV 691
+LFT K+DL G +Y+ S+++L+ + RYC NN + EE+++Q+ +LL+++
Sbjct: 352 ILFTHKEDLGGQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQAELLAVI 411
Query: 692 VRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAELEREKAKGRQECEEKPKSQQDELER 871
R+ +E +++N L+ +++Q+ G C+E + Q ++E
Sbjct: 412 ERLGREREGSFHSNDLF-LDAQLLQRT---------------GAGACQEDYRQYQAKVEW 455
Query: 872 KNQRTQMEREVEERQASW 925
Q + ++E+ E +++W
Sbjct: 456 --QVEKHKQELRENESNW 471
Score = 109 bits (272), Expect = 1e-23
Identities = 56/111 (50%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Frame = +2
Query: 134 QNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVV 313
Q+ ++S RL+LVG+TGAGKSATGNSILG++ F S + A S+T+ C G W + V V
Sbjct: 21 QSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEV 80
Query: 314 VDTPGIFDPEVQEEDT-VKEICRCMILTSPGPHALLLVIPLGRYTPEEHKA 463
VDTP IF +V + D +E C +L++PGPHALLLV LGR+T ++ +A
Sbjct: 81 VDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQA 131
>ref|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens].
Length = 307
Score = 175 bits (443), Expect = 2e-43
Identities = 94/258 (36%), Positives = 158/258 (61%), Gaps = 1/258 (0%)
Frame = +2
Query: 155 LRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGIF 334
LR++LVGKTG GKSATGNSILG+ VF S + A+S+T+ C+ TW R+V+VVDTP IF
Sbjct: 28 LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDTPSIF 87
Query: 335 DPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQRMI 514
+ + ++ K I C +L++PGPH LLLVI LGR+T ++ A K+ +FG AM+ ++
Sbjct: 88 ESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMRHVV 147
Query: 515 LLFTRKDDLEGTDFHEYLKEASE-SVRELMGKFRNRYCVVNNRATGEERKRQRDQLLSLV 691
+LFT K+DL G +Y+ S+++L+ + RYC NN + EE+++Q+ +LL+++
Sbjct: 148 ILFTHKEDLGGQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQAELLAVI 207
Query: 692 VRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAELEREKAKGRQECEEKPKSQQDELER 871
R+ +E +++N L+ +++Q+ G C+E + Q ++E
Sbjct: 208 ERLGREREGSFHSNDLF-LDAQLLQRT---------------GAGACQEDYRQYQAKVEW 251
Query: 872 KNQRTQMEREVEERQASW 925
Q + ++E+ E +++W
Sbjct: 252 --QVEKHKQELRENESNW 267
>ref|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens].
Length = 337
Score = 169 bits (429), Expect = 7e-42
Identities = 83/199 (41%), Positives = 129/199 (64%), Gaps = 1/199 (0%)
Frame = +2
Query: 149 SQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPG 328
S+LR++LVGKTG GKSA GNSIL K+ F S + ++++TK C K + +W RE+V++DTP
Sbjct: 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPD 80
Query: 329 IFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQR 508
+F + E KE+ RC +L++PGPH LLLV LGRYT ++ +A+ ++ +FGE AM
Sbjct: 81 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGH 140
Query: 509 MILLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLS 685
I+LFT K+DL G +Y+ ++ ++++ +L+ R C NNRA G + Q +L+
Sbjct: 141 TIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMD 200
Query: 686 LVVRVVKECGERYYTNYLY 742
+ ++ E +YTN LY
Sbjct: 201 CIEDLLMEKNGDHYTNGLY 219
>ref|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens].
Length = 292
Score = 169 bits (427), Expect = 1e-41
Identities = 106/292 (36%), Positives = 167/292 (57%), Gaps = 2/292 (0%)
Frame = +2
Query: 41 PKEQDPHFLGVQTTMAAQDPSKPKTSHGLR-KQNLRDSQLRLVLVGKTGAGKSATGNSIL 217
P+E P L +QDP + S GLR K+ +LRL+L+GKTG+GKSATGNSIL
Sbjct: 10 PQENPPEEL-------SQDPVL-ELSGGLREKEQKTPRRLRLILMGKTGSGKSATGNSIL 61
Query: 218 GKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTS 397
G+ VF S +S + +TK ++ W +E+ V+DTP I P+V E IC+ ++L++
Sbjct: 62 GRDVFESKLSTRPVTKTSQRRSREWAGKELEVIDTPNILSPQVSPE-VADAICQAIVLSA 120
Query: 398 PGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEA 577
PGPHA+LLV LGR+T E+ + ++ +FG + IL+FTRK+DL G +Y++E
Sbjct: 121 PGPHAVLLVTQLGRFTDEDQQVVRRLQEVFGVGVLGHTILVFTRKEDLAGGSLEDYVRET 180
Query: 578 -SESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSE 754
++++ L R+C NNRA GEE++ Q +L+ V ++ E YY+N Y+ ++
Sbjct: 181 NNQALAWLDVTLARRHCGFNNRAQGEEQEAQLRELMEKVEAIMWENEGDYYSNKAYQYTQ 240
Query: 755 EVIQKVIEENRRAELEREKAKGRQECEEKPKSQQDELERKNQRTQMEREVEE 910
+ R EL+ + Q E+ P ++ LE +Q+++E EE
Sbjct: 241 -------QNFRLKELQERQVSQGQGSEDVP-GEESWLE---GLSQIQKESEE 281
>ref|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens].
Length = 665
Score = 151 bits (381), Expect = 3e-36
Identities = 89/236 (37%), Positives = 141/236 (59%), Gaps = 1/236 (0%)
Frame = +2
Query: 125 LRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKERE 304
+ +Q+ + S+LRL+L+GK +GKSATGN+ILGK VF S S +++ K C++ +ER+
Sbjct: 1 MSEQSCQMSELRLLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERK 60
Query: 305 VVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTM 484
VVV+DTP +F ED + I C+ L++P HALLLVI +G +T E+ + + I +
Sbjct: 61 VVVIDTPDLFSSIACAEDKQRNIQHCLELSAPSLHALLLVIAIGHFTREDEETAKGIQQV 120
Query: 485 FGERAMQRMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRYCVVNNRATG-EERK 661
FG A + +I++FTRKDDL G D + E ++ +++L+ + RYC+ NN+ +E+
Sbjct: 121 FGAEARRHIIIVFTRKDDL-GDDLLQDFIEKNKPLKQLVQDYEGRYCIFNNKTNSKDEQI 179
Query: 662 RQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAELEREKAKGRQE 829
Q +LL V +V G Y+ N+ E S Q + N A E +K +G +E
Sbjct: 180 TQVLELLRKVESLVNTNGGPYHVNFKTEGSR--FQDCV--NEAASQEGDKPQGPRE 231
Score = 150 bits (378), Expect = 6e-36
Identities = 85/233 (36%), Positives = 131/233 (56%), Gaps = 6/233 (2%)
Frame = +2
Query: 44 KEQDPHFLGVQTTMAAQDPSKPKTSHGLR------KQNLRDSQLRLVLVGKTGAGKSATG 205
K + F A+Q+ KP+ + +QN S+L ++LVGK GAGKSA G
Sbjct: 205 KTEGSRFQDCVNEAASQEGDKPQGPRERQLQSTGPEQNPGTSELTVLLVGKRGAGKSAAG 264
Query: 206 NSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCM 385
NSILG++ F +G S +S+T+ +W++++V ++D P I + + + K IC
Sbjct: 265 NSILGRQAFQTGFSEQSVTQSFLSESRSWRKKKVSIIDAPDISSLKNIDSEVRKHICT-- 322
Query: 386 ILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEY 565
GPHA LLV PLG YT + S I FGE+ + MI+L TRK+DL D +
Sbjct: 323 -----GPHAFLLVTPLGFYTKNDEAVLSTIQNNFGEKFFEYMIILLTRKEDLGDQDLDTF 377
Query: 566 LKEASESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLSLVVRVVKECGERY 724
L+ +++++ L+ K +NRY N RATGEE +RQ D+LL + +V + G ++
Sbjct: 378 LRNSNKALYGLIQKCKNRYSAFNYRATGEEEQRQADELLEKIESMVHQNGNKH 430
Score = 135 bits (340), Expect = 1e-31
Identities = 81/219 (36%), Positives = 126/219 (57%), Gaps = 4/219 (1%)
Frame = +2
Query: 155 LRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPG-- 328
L +VLVG++G GKSATGNSILG VF S + A+ +TK + G+ TW +EVVVVDTP
Sbjct: 439 LNIVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTWDGQEVVVVDTPSFN 498
Query: 329 -IFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQ 505
+ D E +E+ RC+ G +LV LGR+T E+ A +K+ +FG +
Sbjct: 499 QMLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQLGRFTEEDKTAVAKLEAIFGADFTK 558
Query: 506 RMILLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYCVVNNRATGEERKRQRDQLL 682
I+LFTRK+DL + +++K + ++++R + K R C NN+ TG+ ++ Q LL
Sbjct: 559 YAIMLFTRKEDLGAGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQETQVKALL 618
Query: 683 SLVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAEL 799
+ V + KE G Y + E ++I+ V E ++ +L
Sbjct: 619 TKVNDLRKESGWSGYP-HTQENVSKLIKNVQEMSQAEKL 656
>ref|NP_005693.1| GTPase Era, mitochondrial [Homo sapiens].
Length = 437
Score = 61.6 bits (148), Expect = 3e-09
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Frame = +2
Query: 59 HFLGVQTTMAAQDPSKPKTSHGLRKQNL----------RDSQLRLVLVGKTGAGKSATGN 208
HFLG ++ P P S +Q++ LR+VL+G AGKS N
Sbjct: 72 HFLGFSQPDSSVTPCVPAVSMNRDEQDVLLVHHPDMPENSRVLRVVLLGAPNAGKSTLSN 131
Query: 209 SILGKKVFPSGISAKSITKHCEK-GKSTWKEREVVVVDTPGIFDPEVQE 352
+LG+KVFP +S K T C+ G T KE +V+++DTPGI P Q+
Sbjct: 132 QLLGRKVFP--VSRKVHTTRCQALGVITEKETQVILLDTPGIISPGKQK 178
>ref|NP_001182067.1| GTPase IMAP family member-like [Homo sapiens].
Length = 217
Score = 60.5 bits (145), Expect = 6e-09
Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Frame = +2
Query: 155 LRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKS----TWKER------- 301
+ L L G T +GKS+ GN +LG F S + S+T C G+S ++ R
Sbjct: 9 INLALFGMTQSGKSSAGNILLGSTDFHSSFAPCSVTTCCSLGRSCHLHSFMRRGGLEVAL 68
Query: 302 EVVVVDTPGIFDPEVQEEDTVKEICRCMI--LTSPGPHALLLV----IPLGRYTPEEHKA 463
+V V+DTPG + ++ +E+ + G H LLV +P E
Sbjct: 69 QVQVLDTPGYPHSRLSKKYVKQEVKEALAHHFGQGGLHLALLVQRADVPF--CGQEVTDP 126
Query: 464 SSKILTMFGERAMQRMILLFTRKDDLE--GTDFHEYLKEASESVRELMGKFRNRYCVVNN 637
I + G M +LFT + +E G +YL EAS++++ L+ +++Y V
Sbjct: 127 VQMIQELLGHAWMNYTAILFTHAEKIEEAGLTEDKYLHEASDTLKTLLNSIQHKY--VFQ 184
Query: 638 RATGEERKRQRDQLLSLVVRVVKE 709
G+ QR ++L ++ +KE
Sbjct: 185 YKKGKSLNEQRMKILERIMEFIKE 208
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 67,082,233
Number of extensions: 1754054
Number of successful extensions: 8874
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 8313
Number of HSP's successfully gapped: 13
Length of query: 696
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 586
Effective length of database: 14,671,124
Effective search space: 8597278664
Effective search space used: 8597278664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000668
(2090 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musc... 329 6e-90
Alignment gi|NP_001230128.1| GTPase IMAP family member 4 isoform c [Mus m... 253 3e-67
Alignment gi|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus]. 196 8e-50
Alignment gi|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus]. 182 7e-46
Alignment gi|NP_778200.1| GTPase IMAP family member 5 [Mus musculus]. 181 2e-45
Alignment gi|NP_787056.1| GTPase IMAP family member 1 [Mus musculus]. 179 6e-45
Alignment gi|NP_032402.2| GTPase IMAP family member 1 [Mus musculus]. 179 6e-45
Alignment gi|NP_112537.2| GTPase IMAP family member 3 [Mus musculus]. 175 1e-43
Alignment gi|NP_694815.1| GTPase IMAP family member 6 [Mus musculus]. 159 1e-38
Alignment gi|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus]. 134 3e-31
>ref|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musculus].
Length = 328
Score = 329 bits (843), Expect = 6e-90
Identities = 180/316 (56%), Positives = 236/316 (74%), Gaps = 4/316 (1%)
Frame = +2
Query: 71 VQTTMAAQDPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISA 250
VQ A P ++SH L Q+ QLR+VL+GKTGAGKS+TGNSILG+KVF SGI A
Sbjct: 3 VQCGGAGFIPESSRSSHELGNQDQGIPQLRIVLLGKTGAGKSSTGNSILGEKVFNSGICA 62
Query: 251 KSITKHCEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIP 430
KSITK CEK STW +E+VVVDTPGIFD EV + DT +EI R + LTSPGPHALLLV+P
Sbjct: 63 KSITKVCEKRVSTWDGKELVVVDTPGIFDTEVPDADTQREITRYVALTSPGPHALLLVVP 122
Query: 431 LGRYTPEEHKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASESVRELMGKF 610
LGRYT EEHKA+ KIL MFG++A + MILL TRKDDLE TD HEYL++A + +E+M +F
Sbjct: 123 LGRYTVEEHKATQKILDMFGKQARRFMILLLTRKDDLEDTDIHEYLEKAPKFFQEVMHEF 182
Query: 611 RNRYCVVNNRATGEERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQKV---IEE 781
+NRYC+ NNRA+G E++ Q+ QLL+LV +V+E G R +TN +YE +E VIQK ++E
Sbjct: 183 QNRYCLFNNRASGAEKEEQKMQLLTLVQSMVRENGGRCFTNKMYESAECVIQKETLRMQE 242
Query: 782 NRRAELEREKAKGRQECEEKPKSQQDELERKNQRTQMEREVEERQASWDQWQEDARDKID 961
R ELEREKA+ R+E EE+ K +DELER+ +R +MERE +ER+A + + Q++AR +++
Sbjct: 243 LYREELEREKARIRREYEEQIKDLRDELEREIRRARMEREFKEREAIFTKNQQNARKEVE 302
Query: 962 -LNEILETILNVLKIA 1006
+ ILE I+ +IA
Sbjct: 303 NTSMILELIIKAWEIA 318
>ref|NP_001230128.1| GTPase IMAP family member 4 isoform c [Mus musculus].
Length = 219
Score = 253 bits (647), Expect = 3e-67
Identities = 131/207 (63%), Positives = 161/207 (77%)
Frame = +2
Query: 71 VQTTMAAQDPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISA 250
VQ A P ++SH L Q+ QLR+VL+GKTGAGKS+TGNSILG+KVF SGI A
Sbjct: 3 VQCGGAGFIPESSRSSHELGNQDQGIPQLRIVLLGKTGAGKSSTGNSILGEKVFNSGICA 62
Query: 251 KSITKHCEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIP 430
KSITK CEK STW +E+VVVDTPGIFD EV + DT +EI R + LTSPGPHALLLV+P
Sbjct: 63 KSITKVCEKRVSTWDGKELVVVDTPGIFDTEVPDADTQREITRYVALTSPGPHALLLVVP 122
Query: 431 LGRYTPEEHKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASESVRELMGKF 610
LGRYT EEHKA+ KIL MFG++A + MILL TRKDDLE TD HEYL++A + +E+M +F
Sbjct: 123 LGRYTVEEHKATQKILDMFGKQARRFMILLLTRKDDLEDTDIHEYLEKAPKFFQEVMHEF 182
Query: 611 RNRYCVVNNRATGEERKRQRDQLLSLV 691
+NRYC+ NNRA+G E++ Q+ QLL+LV
Sbjct: 183 QNRYCLFNNRASGAEKEEQKMQLLTLV 209
>ref|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus].
Length = 293
Score = 196 bits (497), Expect = 8e-50
Identities = 107/286 (37%), Positives = 178/286 (62%), Gaps = 2/286 (0%)
Frame = +2
Query: 146 DSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTP 325
D+ LR+VLVGKTG+GKSAT N+ILG+K F S I+ ++T++C+ WKER+++VVDTP
Sbjct: 6 DNSLRIVLVGKTGSGKSATANTILGQKRFVSRIAPHAVTQNCQSDSRRWKERDLLVVDTP 65
Query: 326 GIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQ 505
G+FD +V+ E T EI RC++ + PGPHA++LV+ L R+T EE + +I +FGE M+
Sbjct: 66 GLFDTKVKLETTCLEISRCVLQSCPGPHAIILVLQLNRFTVEEQETVIRIKAIFGEEVMK 125
Query: 506 RMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLS 685
MI+LFTRKDDLE +++ ++ +++ ++ + NR +NN+A ER+ Q +L+
Sbjct: 126 YMIVLFTRKDDLEDQSLSDFIADSDTNLKSIIKECGNRCLAINNKAERAERETQVQELMG 185
Query: 686 LVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRR--AELEREKAKGRQECEEKPKSQQD 859
LV +V+ G Y+++ +Y+ +E ++K +E R+ +L ++ + +E K
Sbjct: 186 LVETLVQNNGGLYFSHPVYKDAERRLKKQVEILRKIYTDLPEKEIRIVEEEYALRKFSAQ 245
Query: 860 ELERKNQRTQMEREVEERQASWDQWQEDARDKIDLNEILETILNVL 997
E E+K Q + ++ R +E+A I N+I+E + VL
Sbjct: 246 EREKKIQAIRENYNLKIRNL-----REEAEKNI-FNQIIEEVKKVL 285
>ref|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus].
Length = 291
Score = 182 bits (463), Expect = 7e-46
Identities = 96/263 (36%), Positives = 162/263 (61%), Gaps = 7/263 (2%)
Frame = +2
Query: 146 DSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTP 325
D+++R++LVGKTG GKSAT N+ILG++ F S I A ++TK C++ WK + +VVVDTP
Sbjct: 6 DTEVRIILVGKTGNGKSATANTILGRRQFDSKICANAVTKTCQRAYREWKGKNLVVVDTP 65
Query: 326 GIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQ 505
G+FD + + T EI RC++ + PGPHA++LV+ L RYT EE K + I +FGE A++
Sbjct: 66 GLFDTKETMKTTCFEISRCVLYSCPGPHAIILVLRLDRYTEEEQKTVALIKGLFGEAALK 125
Query: 506 RMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLS 685
MI+LFT K+DLE ++ +A E + ++ + RY NN+A +E++ Q QL+
Sbjct: 126 YMIILFTHKEDLEDQSLDNFVSDAGEKLNNIISQCGKRYLAFNNKAALDEQENQVQQLIE 185
Query: 686 LVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRR-------AELEREKAKGRQECEEKP 844
L ++V + G Y+++ +Y+ + + +EE + +E+ER + + + EK
Sbjct: 186 LTEKMVAQNGGSYFSDKIYKDIDSRLNHCLEELKETYAQQLTSEIERIEKEYAAKL-EKG 244
Query: 845 KSQQDELERKNQRTQMEREVEER 913
K+ Q ++N ++ R ++E+
Sbjct: 245 KAAQIVFAQRNHDEKL-RNLKEK 266
>ref|NP_778200.1| GTPase IMAP family member 5 [Mus musculus].
Length = 308
Score = 181 bits (459), Expect = 2e-45
Identities = 105/263 (39%), Positives = 158/263 (60%), Gaps = 4/263 (1%)
Frame = +2
Query: 149 SQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPG 328
S LR++LVGK+G GKSATGNSIL + F S + +S+T+ + TW+ R ++VVDTP
Sbjct: 25 SCLRILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTWEGRSILVVDTPP 84
Query: 329 IFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQR 508
IF+ + Q +D K+I C +L +PGPH LLLV LGR+T E+ A + +FG M+
Sbjct: 85 IFESKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQLGRFTAEDAMAVRMVKEVFGVGVMRH 144
Query: 509 MILLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLS 685
MI+LFTRK+DLE E++ + S+R L + RYC NNRA+GEE++ Q +L++
Sbjct: 145 MIVLFTRKEDLEEKSLEEFVTHTDNRSLRSLTQECGRRYCAFNNRASGEEQQGQLAELMA 204
Query: 686 LVVRVVKECGERYYTNYLYEKSEEVIQK---VIEENRRAELEREKAKGRQECEEKPKSQQ 856
LV R+ +EC +++N L+ +E ++++ V +E R L AK RQE E++
Sbjct: 205 LVRRLEQECEGSFHSNDLFLHAEALLREGYSVHQEAYRCYL----AKVRQEVEKQ----- 255
Query: 857 DELERKNQRTQMEREVEERQASW 925
RE+EE++ SW
Sbjct: 256 ------------RRELEEQEGSW 266
>ref|NP_787056.1| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 179 bits (455), Expect = 6e-45
Identities = 94/224 (41%), Positives = 143/224 (63%), Gaps = 2/224 (0%)
Frame = +2
Query: 152 QLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGI 331
QLRL+LVG+TG GKSATGNSILG+K F S + A +T+ C W +V VVDTP I
Sbjct: 26 QLRLILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQVEVVDTPDI 85
Query: 332 FDPEVQEEDT-VKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQR 508
F E+ D E RC +L++PGPHALLLV LGR+T ++ +A + + +FG++ M R
Sbjct: 86 FSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVKRLFGKQVMAR 145
Query: 509 MILLFTRKDDLEGTDFHEYLK-EASESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLS 685
+++FTR++DL G +Y+ + ++R+L+ + R C +NNRATG ER+ Q +QLL
Sbjct: 146 TVVVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNNRATGSEREAQAEQLLG 205
Query: 686 LVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAELEREKAK 817
+V +V+E G +Y+N +YE ++++ R A+ + + AK
Sbjct: 206 MVACLVREHGGAHYSNEVYE--------LVQDTRCADPQDQVAK 241
>ref|NP_032402.2| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 179 bits (455), Expect = 6e-45
Identities = 94/224 (41%), Positives = 143/224 (63%), Gaps = 2/224 (0%)
Frame = +2
Query: 152 QLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGI 331
QLRL+LVG+TG GKSATGNSILG+K F S + A +T+ C W +V VVDTP I
Sbjct: 26 QLRLILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQVEVVDTPDI 85
Query: 332 FDPEVQEEDT-VKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQR 508
F E+ D E RC +L++PGPHALLLV LGR+T ++ +A + + +FG++ M R
Sbjct: 86 FSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVKRLFGKQVMAR 145
Query: 509 MILLFTRKDDLEGTDFHEYLK-EASESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLS 685
+++FTR++DL G +Y+ + ++R+L+ + R C +NNRATG ER+ Q +QLL
Sbjct: 146 TVVVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNNRATGSEREAQAEQLLG 205
Query: 686 LVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAELEREKAK 817
+V +V+E G +Y+N +YE ++++ R A+ + + AK
Sbjct: 206 MVACLVREHGGAHYSNEVYE--------LVQDTRCADPQDQVAK 241
>ref|NP_112537.2| GTPase IMAP family member 3 [Mus musculus].
Length = 301
Score = 175 bits (443), Expect = 1e-43
Identities = 97/239 (40%), Positives = 151/239 (63%), Gaps = 7/239 (2%)
Frame = +2
Query: 155 LRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGIF 334
LR++LVGK+G GKSATGNS+L + F S + +S+T+ + TW+ R ++VVDTP IF
Sbjct: 23 LRILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAETGTWEGRSILVVDTPPIF 82
Query: 335 DPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQRMI 514
+ + Q +D K+I C +L +PGPH LLLV LGR+T E+ A + +FG M+ MI
Sbjct: 83 ESKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQLGRFTAEDVMAVRMVKEVFGVGVMRHMI 142
Query: 515 LLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLSLV 691
+LFTRK+DL E++ + S+R L+ + RYC NNRA+GEE++ Q +L++LV
Sbjct: 143 VLFTRKEDLAEKSLEEFVTHTDNRSLRSLVQECGRRYCAFNNRASGEEQQGQLAELMALV 202
Query: 692 VRVVKECGERYYTNYLYEKSEEVIQK---VIEENRR---AELEREKAKGRQECEEKPKS 850
R+ +EC +++N L+ +E ++++ V +E R A++ +E K R E EE+ S
Sbjct: 203 RRLEQECEGSFHSNDLFLHAETLLREGYSVHQEAYRCYLAKVRQEVEKQRWELEEQEGS 261
>ref|NP_694815.1| GTPase IMAP family member 6 [Mus musculus].
Length = 305
Score = 159 bits (401), Expect = 1e-38
Identities = 88/204 (43%), Positives = 131/204 (64%), Gaps = 1/204 (0%)
Frame = +2
Query: 122 GLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKER 301
GL+++ L +L+L+LVGKTG+GKSATGNSILG++ F S ISA+ +T +KG ++ +
Sbjct: 93 GLKEKKLTPKRLQLLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQKGTREFEGK 152
Query: 302 EVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILT 481
E+ V+DTP IF P+ Q E T K+IC +L SPGPHA+LLVI +GRYT E+ + +
Sbjct: 153 ELEVIDTPDIFSPQNQPEATAKKICD--LLASPGPHAVLLVIQVGRYTAEDQAVARCLQE 210
Query: 482 MFGERAMQRMILLFTRKDDLEGTDFHEYLKE-ASESVRELMGKFRNRYCVVNNRATGEER 658
+FG + IL+FTRK+DL EY++E ++S+ L R+C NN+A G+E+
Sbjct: 211 IFGNTILAYTILVFTRKEDLAEGSLEEYIQENNNKSLDVLDVACERRHCGFNNKAQGDEQ 270
Query: 659 KRQRDQLLSLVVRVVKECGERYYT 730
+ Q +L+ V ++ E YT
Sbjct: 271 EAQLKKLMEEVELILWENEGHCYT 294
>ref|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 134 bits (337), Expect = 3e-31
Identities = 80/219 (36%), Positives = 122/219 (55%), Gaps = 1/219 (0%)
Frame = +2
Query: 98 PSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEK 277
PS + G KQN S LRL+L+GK GAGKSATGN+ILGK VF S S +T C+
Sbjct: 30 PSASQGQEGNFKQNQGTSTLRLLLLGKQGAGKSATGNTILGKAVFESKFSDHMVTDRCQS 89
Query: 278 GKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEH 457
+ + ++V+V+DTP +F E + + +C+ L + LLLV P+G YT E+
Sbjct: 90 ESVSVRGKQVIVIDTPDLFSSLSCSEVRQQNLKQCLELLADDHCVLLLVTPIGHYTEEDR 149
Query: 458 KASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASESVRELMGKF-RNRYCVVN 634
+ I G +A + MI++FTR+D+L+ Y+ E+ ES++EL+ R C N
Sbjct: 150 ETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNYI-ESKESLKELIKNIGSRRCCTFN 208
Query: 635 NRATGEERKRQRDQLLSLVVRVVKECGERYYTNYLYEKS 751
N+A ++R+ Q +LL + ++ E E Y+ E S
Sbjct: 209 NKADKKQRELQVFKLLDAIELLMMESPEPYFEPLKMESS 247
Score = 129 bits (324), Expect = 9e-30
Identities = 71/192 (36%), Positives = 111/192 (57%), Gaps = 4/192 (2%)
Frame = +2
Query: 155 LRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGIF 334
L ++L+G++GAGKSATGN+ILG+ F S + A+ +T + GK T ++VVVVDTP
Sbjct: 476 LNIILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTLDWQDVVVVDTPSFI 535
Query: 335 DPEVQEEDTVK---EICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQ 505
E+D + EI C+ L G +LV+ LGR+T E+ ++ F E M+
Sbjct: 536 QTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQLGRFTQEDEVVVEQLEASFEENIMK 595
Query: 506 RMILLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYCVVNNRATGEERKRQRDQLL 682
MI+LFTRK+DL D H+Y ++++++++ K R C NN+ TGE+++ Q LL
Sbjct: 596 YMIVLFTRKEDLGDGDLHDYTNNTKNKALKKILKKCNGRVCAFNNKETGEDQETQVKGLL 655
Query: 683 SLVVRVVKECGE 718
+ + K E
Sbjct: 656 KIANSLKKNYDE 667
Score = 119 bits (297), Expect = 1e-26
Identities = 73/186 (39%), Positives = 110/186 (59%), Gaps = 1/186 (0%)
Frame = +2
Query: 152 QLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKS-ITKHCEKGKSTWKEREVVVVDTPG 328
+LR++L+GK G GKSA GNSILGK+VF + S K +TK W+ ++V+++D+P
Sbjct: 284 ELRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSPE 343
Query: 329 IFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGERAMQR 508
I ++ +E VK T PGPHA LLV PLG + S I +FGE+ +
Sbjct: 344 ISSWKL-DESAVKNH------TFPGPHAFLLVTPLGSSLKSDDDVFSIIKRIFGEKFTKF 396
Query: 509 MILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLSL 688
I+LFTRK+D E + +KE ++++ L KF RY + N RA+ EE + Q +LLS
Sbjct: 397 TIVLFTRKEDFEDQALDKVIKE-NDALYNLTQKFGERYAIFNYRASVEEEQSQVGKLLSQ 455
Query: 689 VVRVVK 706
+ ++V+
Sbjct: 456 IEKMVQ 461
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,165,830
Number of extensions: 1498295
Number of successful extensions: 7315
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 6930
Number of HSP's successfully gapped: 19
Length of query: 696
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 588
Effective length of database: 12,373,671
Effective search space: 7275718548
Effective search space used: 7275718548
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000668
(2090 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP ... 571 e-163
Alignment gi|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like ... 184 2e-46
Alignment gi|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like ... 177 2e-44
Alignment gi|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like ... 171 1e-42
Alignment gi|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like ... 150 3e-36
Alignment gi|XP_003134606.2| PREDICTED: GTPase IMAP family member 7-like ... 80 6e-15
Alignment gi|XP_003360131.1| PREDICTED: nitric oxide synthase, endothelia... 79 7e-15
Alignment gi|XP_003357100.1| PREDICTED: putative protein PHLOEM PROTEIN 2... 71 3e-12
Alignment gi|XP_003131840.2| PREDICTED: GTPase Era, mitochondrial-like [S... 53 6e-07
>ref|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP family member 4-like [Sus
scrofa].
Length = 315
Score = 571 bits (1471), Expect = e-163
Identities = 293/308 (95%), Positives = 297/308 (96%)
Frame = +2
Query: 83 MAAQDPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSIT 262
MAAQDPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSIT
Sbjct: 1 MAAQDPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSIT 60
Query: 263 KHCEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRY 442
KHCEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPG HALLLVIPLGR
Sbjct: 61 KHCEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGXHALLLVIPLGR- 119
Query: 443 TPEEHKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRY 622
T + +ASSKI + GERAMQRMI L TRKDDLEGTDFHEY +EASESVRELMGKFRNRY
Sbjct: 120 TRQRAQASSKIXPV-GERAMQRMIXLVTRKDDLEGTDFHEYXREASESVRELMGKFRNRY 178
Query: 623 CVVNNRATGEERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAELE 802
CVVNNRATGEERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAELE
Sbjct: 179 CVVNNRATGEERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAELE 238
Query: 803 REKAKGRQECEEKPKSQQDELERKNQRTQMEREVEERQASWDQWQEDARDKIDLNEILET 982
REKAKGRQECEEKPKSQQDELERKNQRTQMEREVEERQASWDQWQEDARDKIDLNEILET
Sbjct: 239 REKAKGRQECEEKPKSQQDELERKNQRTQMEREVEERQASWDQWQEDARDKIDLNEILET 298
Query: 983 ILNVLKIA 1006
ILNVLKIA
Sbjct: 299 ILNVLKIA 306
>ref|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like [Sus scrofa].
Length = 280
Score = 184 bits (466), Expect = 2e-46
Identities = 92/209 (44%), Positives = 135/209 (64%), Gaps = 1/209 (0%)
Frame = +2
Query: 134 QNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVV 313
Q R S+LR++LVGKTG GKSATGNSILGK+VF S +SA+S+TK C + +W+ RE+VV
Sbjct: 61 QRARGSELRIILVGKTGTGKSATGNSILGKQVFESRLSAQSLTKTCSVSRGSWRGREMVV 120
Query: 314 VDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILTMFGE 493
+DTP +F E +E+ RC +L++PGPH LLLV LGR+T ++ + ++ +FG
Sbjct: 121 IDTPDMFSGRDPSESLYEEVQRCFLLSAPGPHVLLLVTQLGRFTTKDEQVVRRVKELFGA 180
Query: 494 RAMQRMILLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYCVVNNRATGEERKRQR 670
++ I+LFTRK+DLEG Y+ + ++++ +L+ R C NNRA G R Q
Sbjct: 181 DVLRHTIVLFTRKEDLEGGSLMHYIHGSDNKALSKLVAACGGRVCAFNNRARGSNRDAQV 240
Query: 671 DQLLSLVVRVVKECGERYYTNYLYEKSEE 757
+L+ L+ +V+ YTN LY +SEE
Sbjct: 241 KELMDLIESLVRAKKGDCYTNQLYRQSEE 269
>ref|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like [Sus scrofa].
Length = 296
Score = 177 bits (449), Expect = 2e-44
Identities = 104/262 (39%), Positives = 156/262 (59%), Gaps = 7/262 (2%)
Frame = +2
Query: 92 QDPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHC 271
+D P S L+ L++ +LRL+L G+TGAGKS+TGNSILG+K F S + A S+T+ C
Sbjct: 12 RDEENPHGSEDLQAA-LQEPRLRLLLAGRTGAGKSSTGNSILGRKHFDSRLRATSVTRSC 70
Query: 272 EKGKSTWKEREVVVVDTPGIFDPEVQEED-TVKEICRCMILTSPGPHALLLVIPLGRYTP 448
W E +V V+DTP +F EV D KE RC +L +PGPHALLLV LGR+T
Sbjct: 71 AVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYLLAAPGPHALLLVTQLGRFTA 130
Query: 449 EEHKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYC 625
++ +A + +FG+ I++FTRK+DL +Y++++ ++++R+L+ + R C
Sbjct: 131 QDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVC 190
Query: 626 VVNNRATGEERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQKVIEENRRAELER 805
NNRATG E++ Q +LL LV +V++ G YTN +Y ++ + EE R ER
Sbjct: 191 AFNNRATGPEQEAQVTELLRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAER 250
Query: 806 EKAKGRQECE-----EKPKSQQ 856
K + C EKPK+Q+
Sbjct: 251 VAQKQQGCCLQRFLCEKPKAQR 272
>ref|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like isoform 2 [Sus scrofa].
Length = 299
Score = 171 bits (434), Expect = 1e-42
Identities = 98/249 (39%), Positives = 151/249 (60%), Gaps = 10/249 (4%)
Frame = +2
Query: 89 AQDPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKH 268
A++ P S L+ L++ +LRL+L G+TGAGKS+TGNSILG+K F S + A S+T+
Sbjct: 7 ARNEENPHGSEDLQAA-LQEPRLRLLLAGRTGAGKSSTGNSILGRKHFDSRLRATSVTRS 65
Query: 269 CEKGKSTWKEREVVVVDTPGIFDPEVQEED-TVKEICRCMILTSPGPHALLLVIPLGRYT 445
C W E +V V+DTP +F EV D KE RC +L +PGPHALLLV LGR+T
Sbjct: 66 CAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYLLAAPGPHALLLVTQLGRFT 125
Query: 446 PEEHKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRY 622
++ +A + +FG+ I++FTRK+DL +Y++++ ++++R+L+ + R
Sbjct: 126 AQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRV 185
Query: 623 CVVNNRATGEERKRQRDQLLSLVVRVVKECGERYYTNYLYE--------KSEEVIQKVIE 778
C NNRATG E++ Q +LL LV +V++ G YTN +Y EE ++KV E
Sbjct: 186 CAFNNRATGPEQEAQVTELLRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAE 245
Query: 779 ENRRAELER 805
+ +L++
Sbjct: 246 QVAGRQLKQ 254
>ref|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like [Sus scrofa].
Length = 270
Score = 150 bits (378), Expect = 3e-36
Identities = 78/205 (38%), Positives = 120/205 (58%), Gaps = 1/205 (0%)
Frame = +2
Query: 122 GLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKER 301
GLR +LRL+LVGK G+GKSATGNSILG+K+F +S++ +T+ ++G W R
Sbjct: 66 GLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGR 125
Query: 302 EVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGPHALLLVIPLGRYTPEEHKASSKILT 481
E+ V+DTP I P + R + + PGPHA+LLV LGR+T E+ + ++
Sbjct: 126 ELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQE 185
Query: 482 MFGERAMQRMILLFTRKDDLEGTDFHEYLKEA-SESVRELMGKFRNRYCVVNNRATGEER 658
+FG + IL+FTRK+DL G EYL+E + + +L R+C NN+ G E+
Sbjct: 186 VFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVEGAEQ 245
Query: 659 KRQRDQLLSLVVRVVKECGERYYTN 733
+ Q ++L+ + ++ E YY+N
Sbjct: 246 EAQLEELMQQIESILWENEGHYYSN 270
>ref|XP_003134606.2| PREDICTED: GTPase IMAP family member 7-like [Sus scrofa].
Length = 208
Score = 79.7 bits (195), Expect = 6e-15
Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 9/167 (5%)
Frame = +2
Query: 449 EEHKASSKILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRYCV 628
++ K I +FGE A++ M+LLFTRKDDLE +++ +A +++ ++ + NRYC
Sbjct: 15 KKKKTVMLIKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCA 74
Query: 629 VNN--RATGEERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQ------KVIEEN 784
+N R E++ Q +L+ L+ ++V++ YYT+ +YE +E ++ K++ E
Sbjct: 75 FSNCSRTDQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKILNEE 134
Query: 785 RRAELER-EKAKGRQECEEKPKSQQDELERKNQRTQMEREVEERQAS 922
+ E E EK + EK K + EL R+ + EE + S
Sbjct: 135 LQMECENIEKKYAHKPLPEKEK--EKELVRRRHSENVRTLTEEAEKS 179
>ref|XP_003360131.1| PREDICTED: nitric oxide synthase, endothelial-like [Sus scrofa].
Length = 767
Score = 79.3 bits (194), Expect = 7e-15
Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 9/159 (5%)
Frame = +2
Query: 473 ILTMFGERAMQRMILLFTRKDDLEGTDFHEYLKEASESVRELMGKFRNRYCVVNN--RAT 646
I +FGE A++ M+LLFTRKDDLE +++ +A +++ ++ + NRYC +N R
Sbjct: 582 IKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTD 641
Query: 647 GEERKRQRDQLLSLVVRVVKECGERYYTNYLYEKSEEVIQ------KVIEENRRAELER- 805
E++ Q +L+ L+ ++V++ YYT+ +YE +E ++ K++ E + E E
Sbjct: 642 QAEKEAQLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKILNEELQMECENI 701
Query: 806 EKAKGRQECEEKPKSQQDELERKNQRTQMEREVEERQAS 922
EK + EK K + EL R+ + EE + S
Sbjct: 702 EKKYAHKPLPEKEK--EKELVRRRHSENVRTLTEEAEKS 738
>ref|XP_003357100.1| PREDICTED: putative protein PHLOEM PROTEIN 2-LIKE A3-like [Sus
scrofa].
Length = 216
Score = 70.9 bits (172), Expect = 3e-12
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Frame = +2
Query: 155 LRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKER----------- 301
+ L L G T +GKS+ GN +LG F S S S+TK C G+S
Sbjct: 8 INLALFGMTQSGKSSAGNILLGSTDFHSSFSPSSVTKDCTLGRSCHLHAFMRRGGQEITL 67
Query: 302 EVVVVDTPGIFDPEVQEEDTVKEICRCMI--LTSPGPHALLLV----IPLGRYTPEEHKA 463
+V V+DTPG + ++ +E+ + G H LLV +PL EE
Sbjct: 68 QVQVLDTPGYPHSMLSKKHVKQEVREALARHFGQEGLHLALLVQRADVPL--CGQEESSP 125
Query: 464 SSKILTMFGERAMQRMILLFTRKDDLEGTDFH--EYLKEASESVRELMGKFRNRYCVVNN 637
I + G+ +LFT + +E F+ EYL+EAS+++ L+ +++Y +
Sbjct: 126 VQLIQELLGQAWKNYTAILFTHAEKIEEAGFNEEEYLREASDTLLTLLNSIQHKY--IFQ 183
Query: 638 RATGEERKRQRDQLLSLVVRVVKE 709
G QR ++L ++ +KE
Sbjct: 184 YKKGNSPNEQRLKILERIIEFIKE 207
>ref|XP_003131840.2| PREDICTED: GTPase Era, mitochondrial-like [Sus scrofa].
Length = 437
Score = 53.1 bits (126), Expect = 6e-07
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 155 LRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEK-GKSTWKEREVVVVDTPGI 331
LR+V++G AGKS N +LG+KVFP +S K T + G T KE +V+++DTPG+
Sbjct: 114 LRVVILGAPNAGKSTLSNKLLGRKVFP--VSKKVHTTRSQALGVITEKEAQVILLDTPGL 171
Query: 332 FDPEVQE 352
P Q+
Sbjct: 172 ISPAKQK 178
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,563,289
Number of extensions: 1735761
Number of successful extensions: 5301
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5103
Number of HSP's successfully gapped: 9
Length of query: 696
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 590
Effective length of database: 8,704,850
Effective search space: 5135861500
Effective search space used: 5135861500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000668
(2090 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 2539 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 2539 bits (1281), Expect = 0.0
Identities = 1350/1361 (99%), Gaps = 9/1361 (0%)
Strand = Plus / Plus
Query: 122 gggcttagaaaacaaaacctcagagattcacagctgagacttgtcttagtgggtaagacc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6618725 gggcttagaaaacaaaacctcagagattcacagctgagacttgtcttagtgggtaagacc 6618784
Query: 182 ggggcaggaaaaagtgccacagggaacagcatcctgggaaagaaagtgtttccttccggc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6618785 ggggcaggaaaaagtgccacagggaacagcatcctgggaaagaaagtgtttccttccggc 6618844
Query: 242 atttcggcaaaatccatcaccaagcactgtgagaaggggaaaagcacctggaaggagaga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6618845 atttcggcaaaatccatcaccaagcactgtgagaaggggaaaagcacctggaaggagaga 6618904
Query: 302 gaggtggtcgtcgtggatacgcctggcatcttcgaccccgaggtacaggaggaagacact 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6618905 gaggtggtcgtcgtggatacgcctggcatcttcgaccccgaggtacaggaggaagacact 6618964
Query: 362 gtgaaggagatttgccgctgcatgatcctgacctctccggggccgcatgccctgctcctg 421
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 6618965 gtgaaggagatttgccgctgcatgatcctgacctctccggggc-gcatgccctgctcctg 6619023
Query: 422 gtcatccccctgggccgttacacgccagaagagcacaaggccagcagcaagatcctgacc 481
|||||||||||||||||| |||||||||| ||||||| |||||||||||||||| |||||
Sbjct: 6619024 gtcatccccctgggccgt-acacgccaga-gagcaca-ggccagcagcaagatc-tgacc 6619079
Query: 482 atgtttggagagagagccatgcagcgcatgattctcttgttcacccggaaagacgacttg 541
|||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 6619080 -tgtt-ggagagagagccatgcagcgcatgat-ctcttgt-cacccggaaagacgacttg 6619135
Query: 542 gaaggcactgatttccatgagtacttaaaggaagcttcggaaagcgttcgcgagctgatg 601
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 6619136 gaaggcactgatttccatgagtactaaagggaagcttcggaaagcgttcgcgagctgatg 6619195
Query: 602 ggcaagttcagaaatcgctactgtgtggtcaacaacagggccacgggagaggagcggaag 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619196 ggcaagttcagaaatcgctactgtgtggtcaacaacagggccacgggagaggagcggaag 6619255
Query: 662 cgccagagggatcagctgctgtccctggtcgtgcgtgtggtcaaggagtgcggagaaaga 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619256 cgccagagggatcagctgctgtccctggtcgtgcgtgtggtcaaggagtgcggagaaaga 6619315
Query: 722 tactacaccaattacttgtatgaaaagtccgaggaggtgatccagaaagtcatagaagaa 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619316 tactacaccaattacttgtatgaaaagtccgaggaggtgatccagaaagtcatagaagaa 6619375
Query: 782 aatcgcagggcagagctagagagagagaaggcgaagggaagacaggagtgtgaagagaaa 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619376 aatcgcagggcagagctagagagagagaaggcgaagggaagacaggagtgtgaagagaaa 6619435
Query: 842 cccaaaagccagcaagatgaactggagcgcaaaaaccaaaggacgcagatggagagggag 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619436 cccaaaagccagcaagatgaactggagcgcaaaaaccaaaggacgcagatggagagggag 6619495
Query: 902 gtggaggaaaggcaggcttcctgggatcaatggcaggaagacgccagagacaaaattgat 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619496 gtggaggaaaggcaggcttcctgggatcaatggcaggaagacgccagagacaaaattgat 6619555
Query: 962 ctgaacgagattcttgaaaccatcttaaatgtattgaagatagcttccacccttttctca 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619556 ctgaacgagattcttgaaaccatcttaaatgtattgaagatagcttccacccttttctca 6619615
Query: 1022 ctgttcaggctttaaacactcagatgcaccttcatgaaactctggctctctttcctgcat 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619616 ctgttcaggctttaaacactcagatgcaccttcatgaaactctggctctctttcctgcat 6619675
Query: 1082 atttccaggccgccctgccctatgtaggtcaggccaatctcgttttcctgtttctcaggc 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619676 atttccaggccgccctgccctatgtaggtcaggccaatctcgttttcctgtttctcaggc 6619735
Query: 1142 tctccagactaagcagcagagtgaaggtcactgctggcagtgggtaggtgcttgactgat 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619736 tctccagactaagcagcagagtgaaggtcactgctggcagtgggtaggtgcttgactgat 6619795
Query: 1202 tgaacagggcagggacaaattctcaatctgtgacactccaaagcagaaagaattgacacg 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619796 tgaacagggcagggacaaattctcaatctgtgacactccaaagcagaaagaattgacacg 6619855
Query: 1262 ccctacccgtggagcctttcttaaaagcacagaggccagatatgcaggaggccaatgatg 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619856 ccctacccgtggagcctttcttaaaagcacagaggccagatatgcaggaggccaatgatg 6619915
Query: 1322 accccctctacttccccctagtaaaatttctcctctagattttctctagattggtaggta 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619916 accccctctacttccccctagtaaaatttctcctctagattttctctagattggtaggta 6619975
Query: 1382 atctcccccactgtggcttcttctcacttaattttgcccttaagaccccagcaatcatgt 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619976 atctcccccactgtggcttcttctcacttaattttgcccttaagaccccagcaatcatgt 6620035
Query: 1442 cacccagagaagttcttagcaagttctattctttgcattca 1482
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 6620036 cacccagagaagttcttagcaagttctattctttgcattca 6620076
Score = 389 bits (196), Expect = e-105
Identities = 238/248 (95%), Gaps = 3/248 (1%)
Strand = Plus / Plus
Query: 1829 tttgatctttgcattagttaagcttatagatggaggcagttatagaatgtttctagatga 1888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6620423 tttgatctttgcattagttaagcttatagatggaggcagttatagaatgtttctagatga 6620482
Query: 1889 agagaaatttgtttacttagaatctgacggaaagactcgttccttatcatatggccattg 1948
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6620483 agagaaatttgtttacttagaatctgacggaaagactcgttccttctcatatggccattg 6620542
Query: 1949 aaaaaacaagagttgtctggaaaatagatcctttggaactt-actagtgaaatgtccgaa 2007
|| || |||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 6620543 aagaacaaagagttgtctggaaaatagatcctttggaacttaactagtgaaatgtcagaa 6620602
Query: 2008 aaaat-aaagaccgagattcc-ccgataggaggaaaagatgtgatatattcagatgtacg 2065
||||| |||||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 6620603 aaaataaaagacagagattccacagataggaggaaaagatgtgatatattcagatgtacg 6620662
Query: 2066 tgtggaaa 2073
||||||||
Sbjct: 6620663 tgtggaaa 6620670
Score = 139 bits (70), Expect = 7e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 gtttagtagaacctctggttagcaaggccttcaaagttagccaaaggagcaggacccaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6613881 gtttagtagaacctctggttagcaaggccttcaaagttagccaaaggagcaggacccaca 6613940
Query: 61 ttttttaggt 70
||||||||||
Sbjct: 6613941 ttttttaggt 6613950
Score = 113 bits (57), Expect = 4e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 67 aggtgttcaaactacgatggcggcccaggaccccagtaaacccaagaccagccatgg 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6616622 aggtgttcaaactacgatggcggcccaggaccccagtaaacccaagaccagccatgg 6616678
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 58,883,001
Number of extensions: 2626
Number of successful extensions: 2626
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2621
Number of HSP's successfully gapped: 5
Length of query: 2090
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2068
Effective length of database: 2,808,408,574
Effective search space: 5807788931032
Effective search space used: 5807788931032
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)