Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000681
(1068 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094545.1| alanyl-tRNA synthetase, cytoplasmic [Bos tau... 658 0.0
Alignment gi|NP_001178140.1| probable alanyl-tRNA synthetase, mitochondri... 201 1e-51
Alignment gi|XP_002697304.1| PREDICTED: alanyl-tRNA synthetase 2, mitocho... 191 9e-49
>ref|NP_001094545.1| alanyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 968
Score = 658 bits (1698), Expect = 0.0
Identities = 336/355 (94%), Positives = 346/355 (97%)
Frame = +3
Query: 3 DEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMSTQQIKKAE 182
DEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMSTQQIKKAE
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMSTQQIKKAE 653
Query: 183 ELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGP 362
E+ANEMIEAAKPVY ++C LAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGP
Sbjct: 654 EIANEMIEAAKPVYTEDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGP 713
Query: 363 AGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKADSLMKS 542
AGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKA+SL KS
Sbjct: 714 AGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKKS 773
Query: 543 LCAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKVMDDLDRAS 722
LC +EAKVKAQ APNKDVQREIADLGEALATA+IPQWQKDEFRENLKSLKKVMDDLDRAS
Sbjct: 774 LCVVEAKVKAQAAPNKDVQREIADLGEALATAIIPQWQKDEFRENLKSLKKVMDDLDRAS 833
Query: 723 KADVQKRVLERTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVD 902
KADVQKRVLE+TKQLIDS+PNQPLVILE+ESGASAKALNEALKLFK HSPQTSAMLFTVD
Sbjct: 834 KADVQKRVLEKTKQLIDSSPNQPLVILEVESGASAKALNEALKLFKMHSPQTSAMLFTVD 893
Query: 903 NEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGKXGGKDVSAQATGKNVGCL 1067
NEAG+I CLCQVPQN ANRGLKASEWVQQVSGLMDGK GGKDVSAQATGKNVGCL
Sbjct: 894 NEAGRITCLCQVPQNAANRGLKASEWVQQVSGLMDGKGGGKDVSAQATGKNVGCL 948
>ref|NP_001178140.1| probable alanyl-tRNA synthetase, mitochondrial [Bos taurus].
Length = 983
Score = 201 bits (510), Expect = 1e-51
Identities = 127/353 (35%), Positives = 191/353 (54%), Gaps = 4/353 (1%)
Frame = +3
Query: 3 DEPRRRPVMSNHTATHILNFALRSVLGEA-DQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 179
DE R M HTA H+LN+ALR VLG +QRGS + P+RLRFD + ++ +Q++
Sbjct: 619 DEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERLRFDVATQAPLTPEQLRAV 678
Query: 180 EELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 359
E + + + VY + LA + GLR++ DE YPDPVRVVS+GVPV+ LD P+
Sbjct: 679 EVTVQKAVGRDEAVYMEEVALARTAHVPGLRSL-DEVYPDPVRVVSVGVPVAHALD-PAS 736
Query: 360 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKADSLMK 539
A TSVE C GTHL + G VI+ E + KGI R++AV G +AQ+A L +
Sbjct: 737 QAALHTSVELCCGTHLLRTGAIGDLVIIGERQLVKGITRLLAVNGEQAQQAREVGQRLAQ 796
Query: 540 SLCAMEAKVKAQTAPNKDVQREIADLG---EALATAVIPQWQKDEFRENLKSLKKVMDDL 710
+ A A++ + + R D+G +A+ TA +PQWQ+ E + LK+L++ +
Sbjct: 797 EVEAAAARLSQGSRHVAEAHRLSKDMGRLTDAVDTATMPQWQRRELQATLKALQRRANTA 856
Query: 711 DRASKADVQKRVLERTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAML 890
R + + ++T++L+ + PL++ + S S L + ++ T +P TS +L
Sbjct: 857 VRKLE---MGQAAQKTQELLQRHMEGPLIV-DTVSTESLSMLVKVVRQLCTQAPGTSVLL 912
Query: 891 FTVDNEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGKXGGKDVSAQATG 1049
+ GK++C CQV Q+ A A W V M GK G V AQ TG
Sbjct: 913 LS-PQPLGKVLCACQVAQS-ATPAFTAEAWALAVCSHMGGKAWGSRVVAQGTG 963
>ref|XP_002697304.1| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial-like [Bos taurus].
Length = 983
Score = 191 bits (485), Expect = 9e-49
Identities = 123/353 (34%), Positives = 183/353 (51%), Gaps = 4/353 (1%)
Frame = +3
Query: 3 DEPRRRPVMSNHTATHILNFALRSVLGEA-DQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 179
DE R M HTA H+LN+ALR VLG +QRGS + P+RLRFD + ++ +Q++
Sbjct: 619 DEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERLRFDVATQAPLTPEQLRAV 678
Query: 180 EELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 359
E + + + VY + LA + GLR++ DE YPDPVRVVS+GVPV+ LD P+
Sbjct: 679 EVTVQKAVGRDEAVYMEEVALARTAHVPGLRSL-DEVYPDPVRVVSVGVPVAHALD-PAS 736
Query: 360 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKADSLMK 539
A TSVE C GTHL + G VI+ E + KGI R++AV G +AQ+A L +
Sbjct: 737 QAALHTSVELCCGTHLLRTGAIGDLVIIGERQLVKGITRLLAVNGEQAQQAREVGQRLAQ 796
Query: 540 SLCAMEAKVKAQTAPNKDVQREIADLG---EALATAVIPQWQKDEFRENLKSLKKVMDDL 710
+ A A++ + + R D+G +A+ TA +PQWQ+ E + LK+L++ +
Sbjct: 797 EVEAAAARLSQGSRHVAEAHRLSKDMGRLTDAVDTATMPQWQRRELQATLKALQRRANTA 856
Query: 711 DRASKADVQKRVLERTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAML 890
R + + E + + ++++ S L+ + T +P TS +L
Sbjct: 857 VRKLEMGQVRGGAEEKHE----REEKGKLVVDSVSAECVSILSWVCRXLCTQAPGTSVLL 912
Query: 891 FTVDNEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGKXGGKDVSAQATG 1049
+ GK++C CQV Q+ A A W V M GK G V AQ TG
Sbjct: 913 LS-PQPLGKVLCACQVAQS-ATPAFTAEAWALAVCSHMGGKAWGSRVVAQGTG 963
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,665,466
Number of extensions: 1265436
Number of successful extensions: 4587
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4568
Number of HSP's successfully gapped: 3
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000681
(1068 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536788.2| PREDICTED: similar to Alanyl-tRNA synthetase (A... 657 0.0
Alignment gi|XP_861855.1| PREDICTED: similar to Alanyl-tRNA synthetase (A... 657 0.0
Alignment gi|XP_532155.2| PREDICTED: similar to alanyl-tRNA synthetase li... 198 8e-51
>ref|XP_536788.2| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
(AlaRS) isoform 1 [Canis familiaris].
Length = 968
Score = 657 bits (1696), Expect = 0.0
Identities = 335/355 (94%), Positives = 345/355 (97%)
Frame = +3
Query: 3 DEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMSTQQIKKAE 182
DEPRRRP+MSNHTATHILNFALRSVLGEADQ+GSLVAPDRLRFDFTAKGAMSTQQIKKAE
Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLGEADQKGSLVAPDRLRFDFTAKGAMSTQQIKKAE 653
Query: 183 ELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGP 362
E+AN MIEAAKPVY Q+CPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELL+DPSGP
Sbjct: 654 EIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLEDPSGP 713
Query: 363 AGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKADSLMKS 542
AGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKA+SL S
Sbjct: 714 AGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKNS 773
Query: 543 LCAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKVMDDLDRAS 722
L MEAKVKAQTAPNKDVQREIADLGE LATAVIPQWQKDEFRENLKSLKK+MDDLDRAS
Sbjct: 774 LSVMEAKVKAQTAPNKDVQREIADLGEVLATAVIPQWQKDEFRENLKSLKKIMDDLDRAS 833
Query: 723 KADVQKRVLERTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVD 902
KADVQKRVLE+TKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSP+TSAMLFTVD
Sbjct: 834 KADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPETSAMLFTVD 893
Query: 903 NEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGKXGGKDVSAQATGKNVGCL 1067
NEAG+I CLCQVPQN ANRGLKASEWVQQVSGLMDGK GGKDVSAQATGKNVGCL
Sbjct: 894 NEAGRITCLCQVPQNAANRGLKASEWVQQVSGLMDGKGGGKDVSAQATGKNVGCL 948
>ref|XP_861855.1| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
(AlaRS) isoform 3 [Canis familiaris].
Length = 852
Score = 657 bits (1696), Expect = 0.0
Identities = 335/355 (94%), Positives = 345/355 (97%)
Frame = +3
Query: 3 DEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMSTQQIKKAE 182
DEPRRRP+MSNHTATHILNFALRSVLGEADQ+GSLVAPDRLRFDFTAKGAMSTQQIKKAE
Sbjct: 478 DEPRRRPIMSNHTATHILNFALRSVLGEADQKGSLVAPDRLRFDFTAKGAMSTQQIKKAE 537
Query: 183 ELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGP 362
E+AN MIEAAKPVY Q+CPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELL+DPSGP
Sbjct: 538 EIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLEDPSGP 597
Query: 363 AGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKADSLMKS 542
AGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKA+SL S
Sbjct: 598 AGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKNS 657
Query: 543 LCAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKVMDDLDRAS 722
L MEAKVKAQTAPNKDVQREIADLGE LATAVIPQWQKDEFRENLKSLKK+MDDLDRAS
Sbjct: 658 LSVMEAKVKAQTAPNKDVQREIADLGEVLATAVIPQWQKDEFRENLKSLKKIMDDLDRAS 717
Query: 723 KADVQKRVLERTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVD 902
KADVQKRVLE+TKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSP+TSAMLFTVD
Sbjct: 718 KADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPETSAMLFTVD 777
Query: 903 NEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGKXGGKDVSAQATGKNVGCL 1067
NEAG+I CLCQVPQN ANRGLKASEWVQQVSGLMDGK GGKDVSAQATGKNVGCL
Sbjct: 778 NEAGRITCLCQVPQNAANRGLKASEWVQQVSGLMDGKGGGKDVSAQATGKNVGCL 832
>ref|XP_532155.2| PREDICTED: similar to alanyl-tRNA synthetase like [Canis familiaris].
Length = 985
Score = 198 bits (503), Expect = 8e-51
Identities = 126/353 (35%), Positives = 191/353 (54%), Gaps = 4/353 (1%)
Frame = +3
Query: 3 DEPRRRPVMSNHTATHILNFALRSVLGEA-DQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 179
DE R M HTATH+LN+ALR LG +QRGS + P+RLRFD + ++ +Q++
Sbjct: 621 DEAWRLGCMEKHTATHLLNWALRQALGPGTEQRGSHLNPERLRFDVATQAPLTPEQLQAV 680
Query: 180 EELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 359
E E + + VY + LA + GLR++ DE YPDPVRVVS+GVPV+ LD P+
Sbjct: 681 EGTVQEAVGQDEAVYMEEVALAHTAHVPGLRSL-DEVYPDPVRVVSVGVPVARALD-PAS 738
Query: 360 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKADSLMK 539
A TSVE C GTHL + G VI+ E + KG R++AVTG +AQ+A SL +
Sbjct: 739 QAALQTSVELCCGTHLLRTGAVGDLVIIGERQLTKGTVRLLAVTGEQAQQAREVGQSLAQ 798
Query: 540 SLCAMEAKVKAQTAPNKDVQREIADLG---EALATAVIPQWQKDEFRENLKSLKKVMDDL 710
+ A ++ + + R D+G +A+ TAV+PQWQ+ E + LK L++ +
Sbjct: 799 EVEAATERLSRGSQDVVEAHRLSKDMGRLIDAVDTAVMPQWQRRELQAALKVLQRRANTA 858
Query: 711 DRASKADVQKRVLERTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAML 890
R + ++ ++T++L+ + PL++ + + S L + ++ +P TS +L
Sbjct: 859 LRKLEL---RQAAQKTQELLQRHSEGPLIV-DTVAAESLSVLVKVVRQLCERAPCTSVLL 914
Query: 891 FTVDNEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGKXGGKDVSAQATG 1049
+ + G ++C CQV Q+ A A W V M GK G V AQ TG
Sbjct: 915 LSPQPQ-GHVLCACQVAQS-AMPAFTAEAWALAVCSHMGGKAWGSQVVAQGTG 965
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,513,518
Number of extensions: 1308506
Number of successful extensions: 4820
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4814
Number of HSP's successfully gapped: 3
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000681
(1068 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001596.2| alanyl-tRNA synthetase, cytoplasmic [Homo sapie... 652 0.0
Alignment gi|NP_065796.1| alanyl-tRNA synthetase, mitochondrial precursor... 202 4e-52
>ref|NP_001596.2| alanyl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 968
Score = 652 bits (1681), Expect = 0.0
Identities = 334/355 (94%), Positives = 342/355 (96%)
Frame = +3
Query: 3 DEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMSTQQIKKAE 182
DEPRRRP+MSNHTATHILNFALRSVLGEADQ+GSLVAPDRLRFDFTAKGAMSTQQIKKAE
Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLGEADQKGSLVAPDRLRFDFTAKGAMSTQQIKKAE 653
Query: 183 ELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGP 362
E+ANEMIEAAK VY Q+CPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGP
Sbjct: 654 EIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGP 713
Query: 363 AGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKADSLMKS 542
AGSLTSVEFCGGTHL+NSSHAGAFVIV+EEAIAKGIRRIVAVTGAEAQKALRKA+SL K
Sbjct: 714 AGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKKC 773
Query: 543 LCAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKVMDDLDRAS 722
L MEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDE RE LKSLKKVMDDLDRAS
Sbjct: 774 LSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLDRAS 833
Query: 723 KADVQKRVLERTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVD 902
KADVQKRVLE+TKQ IDSNPNQPLVILEMESGASAKALNEALKLFK HSPQTSAMLFTVD
Sbjct: 834 KADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTVD 893
Query: 903 NEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGKXGGKDVSAQATGKNVGCL 1067
NEAGKI CLCQVPQN ANRGLKASEWVQQVSGLMDGK GGKDVSAQATGKNVGCL
Sbjct: 894 NEAGKITCLCQVPQNAANRGLKASEWVQQVSGLMDGKGGGKDVSAQATGKNVGCL 948
>ref|NP_065796.1| alanyl-tRNA synthetase, mitochondrial precursor [Homo sapiens].
Length = 985
Score = 202 bits (514), Expect = 4e-52
Identities = 127/353 (35%), Positives = 193/353 (54%), Gaps = 4/353 (1%)
Frame = +3
Query: 3 DEPRRRPVMSNHTATHILNFALRSVLGEA-DQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 179
DE R M+ HTATH+LN+ALR LG +Q+GS + P++LR D T + ++ +Q++
Sbjct: 621 DEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAV 680
Query: 180 EELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 359
E E + + VY + PLA + GLR++ DE YPDPVRVVS+GVPV+ LD P+
Sbjct: 681 ENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSL-DEVYPDPVRVVSVGVPVAHALD-PAS 738
Query: 360 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKADSLMK 539
A TSVE C GTHL + G VI+ + ++KG R++AVTG +AQ+A SL +
Sbjct: 739 QAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSLAQ 798
Query: 540 SLCAMEAKVKAQTAPNKDVQREIADLG---EALATAVIPQWQKDEFRENLKSLKKVMDDL 710
+ A ++ + + R D+G EA+ TAV+PQWQ+ RE L ++K +
Sbjct: 799 EVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQR---RELLATVKMLQRRA 855
Query: 711 DRASKADVQKRVLERTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAML 890
+ A + + ++T++L++ + PL++ + S S L + ++ +P TS +L
Sbjct: 856 NTAIRKLQMGQAAKKTQELLERHSKGPLIV-DTVSAESLSVLVKVVRQLCEQAPSTSVLL 914
Query: 891 FTVDNEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGKXGGKDVSAQATG 1049
+ GK++C CQV Q A A W V M GK G V AQ TG
Sbjct: 915 LS-PQPMGKVLCACQVAQG-AMPTFTAEAWALAVCSHMGGKAWGSRVVAQGTG 965
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,589,772
Number of extensions: 1274829
Number of successful extensions: 4672
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4653
Number of HSP's successfully gapped: 2
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000681
(1068 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666329.2| alanyl-tRNA synthetase, cytoplasmic [Mus muscul... 652 0.0
Alignment gi|NP_941010.2| alanyl-tRNA synthetase, mitochondrial precursor... 204 7e-53
>ref|NP_666329.2| alanyl-tRNA synthetase, cytoplasmic [Mus musculus].
Length = 968
Score = 652 bits (1681), Expect = 0.0
Identities = 334/355 (94%), Positives = 344/355 (96%)
Frame = +3
Query: 3 DEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMSTQQIKKAE 182
DEPRRRPVMSNHTATHILNFALRSVLGEADQ+GSLVAPDRLRFDFTAKGAMSTQQIKKAE
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLGEADQKGSLVAPDRLRFDFTAKGAMSTQQIKKAE 653
Query: 183 ELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGP 362
E+ N MIEAAKPVY Q+CPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP GP
Sbjct: 654 EIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCGP 713
Query: 363 AGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKADSLMKS 542
AGSLTSVEFCGGTHL+NSSHAGAFVIV+EEAIAKGIRRIVAVTGAEAQKALRK+++L KS
Sbjct: 714 AGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKKS 773
Query: 543 LCAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKVMDDLDRAS 722
L AMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDE RE LKSLKKVMDDLDRAS
Sbjct: 774 LSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRAS 833
Query: 723 KADVQKRVLERTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVD 902
KADVQKRVLE+TKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVD
Sbjct: 834 KADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVD 893
Query: 903 NEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGKXGGKDVSAQATGKNVGCL 1067
NEAGKI CLCQVPQN ANRGLKASEWVQQVSGLMDGK GGKD+SAQATGKNVGCL
Sbjct: 894 NEAGKITCLCQVPQNAANRGLKASEWVQQVSGLMDGKGGGKDMSAQATGKNVGCL 948
>ref|NP_941010.2| alanyl-tRNA synthetase, mitochondrial precursor [Mus musculus].
Length = 980
Score = 204 bits (520), Expect = 7e-53
Identities = 127/353 (35%), Positives = 192/353 (54%), Gaps = 4/353 (1%)
Frame = +3
Query: 3 DEPRRRPVMSNHTATHILNFALRSVLGEA-DQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 179
D+ R M HTATH+L++ALR LG +QRGS + P+RLRFD + ++T+Q++
Sbjct: 616 DKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRFDVATQTLLTTEQLRTV 675
Query: 180 EELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 359
E E++ KPV+ + PLA I GLR++ DE YPDPVRVVS+GVPV+ L P+
Sbjct: 676 ESYVQEVVGQDKPVFMEEVPLAHTARIPGLRSL-DEVYPDPVRVVSVGVPVAHALG-PAS 733
Query: 360 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKADSLMK 539
A TSVE C GTHL ++ G VI+ E + KGI R++A+TG +AQ+A SL +
Sbjct: 734 QAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRLLAITGEQAQQAREVGQSLSQ 793
Query: 540 SLCAMEAKVKAQTAPNKDVQREIADLG---EALATAVIPQWQKDEFRENLKSLKKVMDDL 710
+ A ++ + + R D+G E +AVIPQWQ+ E + LK L++ +
Sbjct: 794 EVEAASERLSQGSRDLPEAHRLSKDIGRLTEVAESAVIPQWQRQELQTTLKMLQRRANTA 853
Query: 711 DRASKADVQKRVLERTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAML 890
R + + + E++++L+ + PL++ + S S L + ++ +P S +L
Sbjct: 854 IRKLE---KGQATEKSQELLKRHSEGPLIV-DTVSAESLSVLVKVVRQLCKQAPSISVLL 909
Query: 891 FTVDNEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGKXGGKDVSAQATG 1049
+ G ++C CQV Q+ A A W V M GK G V AQ TG
Sbjct: 910 LS-PQPTGSVLCACQVAQD-ATPTFTAEAWALAVCSHMGGKAWGSRVVAQGTG 960
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,624,429
Number of extensions: 1061071
Number of successful extensions: 3646
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3625
Number of HSP's successfully gapped: 2
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000681
(1068 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126924.2| PREDICTED: alanyl-tRNA synthetase, cytoplasm... 290 9e-79
Alignment gi|XP_001929628.1| PREDICTED: alanyl-tRNA synthetase, mitochond... 204 7e-53
Alignment gi|XP_003126919.1| PREDICTED: alanyl-tRNA synthetase, cytoplasm... 125 5e-29
>ref|XP_003126924.2| PREDICTED: alanyl-tRNA synthetase, cytoplasmic [Sus scrofa].
Length = 1008
Score = 290 bits (742), Expect = 9e-79
Identities = 148/155 (95%), Positives = 151/155 (97%)
Frame = +3
Query: 3 DEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMSTQQIKKAE 182
DEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMSTQQIKKAE
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMSTQQIKKAE 653
Query: 183 ELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGP 362
ELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGP
Sbjct: 654 ELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGP 713
Query: 363 AGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKG 467
AGSLTSVEFCGGTHLQNSSHAGAFV+ EE++ G
Sbjct: 714 AGSLTSVEFCGGTHLQNSSHAGAFVM--EESLHVG 746
>ref|XP_001929628.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial [Sus scrofa].
Length = 985
Score = 204 bits (519), Expect = 7e-53
Identities = 128/353 (36%), Positives = 198/353 (56%), Gaps = 4/353 (1%)
Frame = +3
Query: 3 DEPRRRPVMSNHTATHILNFALRSVLGEA-DQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 179
DE R M HTA H+LN+ALR LG + +QRGS ++P+RLRFD + ++ +Q++
Sbjct: 621 DEAWRLSCMEKHTAAHLLNWALRKALGPSTEQRGSHLSPERLRFDVATQAPLTPKQLQAV 680
Query: 180 EELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 359
E+ E + + VY + LA + GLR++ DE YPDPVRVVS+GVPV+ L+ P+
Sbjct: 681 EDTVQEAVGRDEAVYMEEVALARTTHVPGLRSL-DEVYPDPVRVVSVGVPVAHALE-PAS 738
Query: 360 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKADSLMK 539
A TSVE C GTHL + G VIV E +AKG R++A+TG +A++A SL +
Sbjct: 739 QAALQTSVELCCGTHLLRTGAIGDLVIVGERQLAKGTTRLLAITGEQARQAREVGQSLAQ 798
Query: 540 SLCAMEAKVKAQTAPNKDVQREIADLG---EALATAVIPQWQKDEFRENLKSLKKVMDDL 710
+ A ++ + + QR D+G +A+ T+V+PQWQ+ E + LK+L++ +
Sbjct: 799 EVEAAAERLSRGSRDVVEAQRLSKDMGRLTDAVDTSVMPQWQRRELQATLKALQRRANTA 858
Query: 711 DRASKADVQKRVLERTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAML 890
R K ++ + VL +T++L+ + PL++ + S S L + ++ +P TS +L
Sbjct: 859 IR--KLEMGQAVL-KTQELLQRHSEGPLIV-DTVSAESLSMLVKVVRQLCKQAPSTSVLL 914
Query: 891 FTVDNEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGKXGGKDVSAQATG 1049
+ G+++C CQV Q+ A A W V M GK G V AQ TG
Sbjct: 915 LS-PQPLGQVLCACQVAQS-ATPAFTAEAWALAVCSHMGGKAWGSRVVAQGTG 965
>ref|XP_003126919.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Sus scrofa].
Length = 81
Score = 125 bits (313), Expect = 5e-29
Identities = 60/61 (98%), Positives = 60/61 (98%)
Frame = +3
Query: 885 MLFTVDNEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGKXGGKDVSAQATGKNVGC 1064
MLFTVDNEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGK GGKDVSAQATGKNVGC
Sbjct: 1 MLFTVDNEAGKIICLCQVPQNIANRGLKASEWVQQVSGLMDGKGGGKDVSAQATGKNVGC 60
Query: 1065 L 1067
L
Sbjct: 61 L 61
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,201,913
Number of extensions: 817978
Number of successful extensions: 3077
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3070
Number of HSP's successfully gapped: 3
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000681
(1068 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 414 e-113
>Sscrofa_Chr06
|| Length = 157765593
Score = 414 bits (209), Expect = e-113
Identities = 209/209 (100%)
Strand = Plus / Minus
Query: 7 agccccgacggaggcctgtcatgagcaaccacacagccacccatatcctgaactttgccc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13367844 agccccgacggaggcctgtcatgagcaaccacacagccacccatatcctgaactttgccc 13367785
Query: 67 tgcgctctgtgcttggagaggctgaccagagaggctccctggttgctcctgaccgccttc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13367784 tgcgctctgtgcttggagaggctgaccagagaggctccctggttgctcctgaccgccttc 13367725
Query: 127 ggtttgacttcactgccaagggagccatgtctacccagcagattaagaaggccgaggagc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13367724 ggtttgacttcactgccaagggagccatgtctacccagcagattaagaaggccgaggagc 13367665
Query: 187 tggctaatgagatgatagaggcagccaag 215
|||||||||||||||||||||||||||||
Sbjct: 13367664 tggctaatgagatgatagaggcagccaag 13367636
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 214 agcccgtctatgcccagaattgtcctctggcagcagccaaagccatccagggcctgcggg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13367201 agcccgtctatgcccagaattgtcctctggcagcagccaaagccatccagggcctgcggg 13367142
Query: 274 ctgtgtttgacgagacctaccccgaccctgtgcgagtcgtctccattggggtcccggtgt 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13367141 ctgtgtttgacgagacctaccccgaccctgtgcgagtcgtctccattggggtcccggtgt 13367082
Query: 334 ccgagctgctggatgacccctccggtcccgctggctcactcacttctgttgagttctgtg 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13367081 ccgagctgctggatgacccctccggtcccgctggctcactcacttctgttgagttctgtg 13367022
Query: 394 ggggaacg 401
||||||||
Sbjct: 13367021 ggggaacg 13367014
Score = 236 bits (119), Expect = 2e-59
Identities = 124/126 (98%)
Strand = Plus / Minus
Query: 943 agaatatagccaaccggggcctgaaagccagcgagtgggtgcaacaggtgtcaggcctga 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13363664 agaatatagccaaccggggcctgaaagccagcgagtgggtgcaacaggtgtcaggcctga 13363605
Query: 1003 tggatggcaaangtggtggcaaagatgtgtctgctcaggccacaggcaagaacgtgggct 1062
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13363604 tggatggcaaaggtggtggcaaagatgtgtccgctcaggccacaggcaagaacgtgggct 13363545
Query: 1063 gcctgc 1068
||||||
Sbjct: 13363544 gcctgc 13363539
Score = 232 bits (117), Expect = 3e-58
Identities = 123/125 (98%)
Strand = Plus / Minus
Query: 622 aggccctggccaccgcagtcatcccccagtggcagaaggacgaattccgggagaatctca 681
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 13364879 aggccctggccaccgcagtcatcccccagtggcagaaggacgagttccgggagaatctca 13364820
Query: 682 aatccctgaagaaggtcatggatgacctagaccgggctagtaaagccgatgtccagaagc 741
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13364819 gatccctgaagaaggtcatggatgacctagaccgggctagtaaagccgatgtccagaagc 13364760
Query: 742 gggtg 746
|||||
Sbjct: 13364759 gggtg 13364755
Score = 222 bits (112), Expect = 3e-55
Identities = 115/116 (99%)
Strand = Plus / Minus
Query: 829 aggccctgaacgaagccttgaaactcttcaagacacattctcctcagacgtctgccatgc 888
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 13364179 aggccctgaacgaagccttgaaactcttcaagacacattctcctcagacgtcggccatgc 13364120
Query: 889 tcttcacagtggataatgaagctggcaagatcatctgcttgtgtcaagtcccccag 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13364119 tcttcacagtggataatgaagctggcaagatcatctgcttgtgtcaagtcccccag 13364064
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 743 ggtgttggagaggacaaaacagctcattgacagcaaccccaaccagccccttgtcatcct 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13364624 ggtgttggagaggacaaaacagctcattgacagcaaccccaaccagccccttgtcatcct 13364565
Query: 803 ggagatggagagcggcgcctcagccaaggc 832
||||||||||||||||||||||||||||||
Sbjct: 13364564 ggagatggagagcggcgcctcagccaaggc 13364535
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 401 gcatctgcagaattcgagtcatgcgggagcctttgtgat 439
|||||||||||||||||||||||||||||||||||||||
Sbjct: 13365165 gcatctgcagaattcgagtcatgcgggagcctttgtgat 13365127
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,026,116
Number of extensions: 137
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 7
Length of query: 1068
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1047
Effective length of database: 2,808,413,156
Effective search space: 2940408574332
Effective search space used: 2940408574332
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)