Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000685
(1195 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039663.1| prohibitin-2 [Bos taurus]. 496 e-140
Alignment gi|NP_001029744.1| prohibitin [Bos taurus]. 223 2e-58
>ref|NP_001039663.1| prohibitin-2 [Bos taurus].
Length = 299
Score = 496 bits (1278), Expect = e-140
Identities = 265/299 (88%), Positives = 265/299 (88%)
Frame = +2
Query: 203 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 382
MAQNLKDLAGRLPSGPR YGIRESVFTVEGGHRAIFFNRIGGVQQ
Sbjct: 1 MAQNLKDLAGRLPSGPRGMGTALKLLLGAGAVAYGIRESVFTVEGGHRAIFFNRIGGVQQ 60
Query: 383 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 562
DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM
Sbjct: 61 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 120
Query: 563 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 742
YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
Sbjct: 121 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 180
Query: 743 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARMLGE 922
DVAITELSFSREYT FLVEKAKQEQRQKIVQAEGEAEAARMLGE
Sbjct: 181 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAARMLGE 240
Query: 923 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 1099
ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIK KK
Sbjct: 241 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGKK 299
>ref|NP_001029744.1| prohibitin [Bos taurus].
Length = 272
Score = 223 bits (569), Expect = 2e-58
Identities = 116/246 (47%), Positives = 167/246 (67%), Gaps = 1/246 (0%)
Frame = +2
Query: 308 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 487
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81
Query: 488 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 667
SKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 141
Query: 668 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 847
QR VS + +LTERA F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVE 201
Query: 848 KAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQNRIYLT 1024
KA+Q+++ I+ AEG+++AA ++ +L + G I+LRK+ AA++I+ ++ S+N YL
Sbjct: 202 KAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLP 261
Query: 1025 ADNLVL 1042
A VL
Sbjct: 262 AGQSVL 267
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,799,550
Number of extensions: 1645931
Number of successful extensions: 7069
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7030
Number of HSP's successfully gapped: 2
Length of query: 398
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 294
Effective length of database: 14,240,222
Effective search space: 4186625268
Effective search space used: 4186625268
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000685
(1195 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543843.2| PREDICTED: similar to B-cell receptor-associate... 382 e-106
Alignment gi|XP_849022.1| PREDICTED: similar to B-cell receptor-associate... 226 4e-59
Alignment gi|NP_001103649.1| prohibitin [Canis lupus familiaris]. 223 2e-58
Alignment gi|XP_541546.1| PREDICTED: similar to prohibitin [Canis familia... 204 2e-52
Alignment gi|XP_851325.1| PREDICTED: similar to prohibitin [Canis familia... 156 3e-38
>ref|XP_543843.2| PREDICTED: similar to B-cell receptor-associated protein 37 [Canis
familiaris].
Length = 283
Score = 382 bits (982), Expect = e-106
Identities = 203/238 (85%), Positives = 205/238 (86%)
Frame = +2
Query: 203 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 382
MAQNLKDLAGRLPSGPR YG+RESVFTVEGGHRAIFFNRIGGVQQ
Sbjct: 1 MAQNLKDLAGRLPSGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQ 60
Query: 383 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 562
DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM
Sbjct: 61 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 120
Query: 563 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 742
YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
Sbjct: 121 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 180
Query: 743 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARML 916
DVAITELSFSREYT FLVEKAKQEQRQKIVQAEGEAEAARM+
Sbjct: 181 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAARMI 238
>ref|XP_849022.1| PREDICTED: similar to B-cell receptor-associated protein 37 [Canis
familiaris].
Length = 234
Score = 226 bits (575), Expect = 4e-59
Identities = 151/299 (50%), Positives = 159/299 (53%)
Frame = +2
Query: 203 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 382
MAQNLKD AGRLPSGPR G + G HR R G
Sbjct: 1 MAQNLKDFAGRLPSGPRGM---------------GTALKLLLGVGVHRGRDRGRAAGHHT 45
Query: 383 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 562
G + PWFQYPIIYDIRARPRKISSPTGSKDLQMVN SLR LSRP+A ELP M
Sbjct: 46 ----GRGPSLQDPWFQYPIIYDIRARPRKISSPTGSKDLQMVNTSLRGLSRPSATELPGM 101
Query: 563 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 742
QR DY + L+ RRELTE +DFSL L+
Sbjct: 102 DQRRARDYR-------------------GECAVHGHEGPGILVDRRELTETPRDFSLSLE 142
Query: 743 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARMLGE 922
DVAITEL FSREYT FLV KAKQE+RQK VQAE
Sbjct: 143 DVAITELGFSREYTAAVEAKQVAQQEAQRAQFLVAKAKQERRQKTVQAE----------- 191
Query: 923 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 1099
AQN SKTIATSQNRIYLTADNLVLNLQDESFTRG DSLIKSKK
Sbjct: 192 ----------------AQNASKTIATSQNRIYLTADNLVLNLQDESFTRGRDSLIKSKK 234
>ref|NP_001103649.1| prohibitin [Canis lupus familiaris].
Length = 272
Score = 223 bits (569), Expect = 2e-58
Identities = 116/246 (47%), Positives = 167/246 (67%), Gaps = 1/246 (0%)
Frame = +2
Query: 308 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 487
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81
Query: 488 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 667
SKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 141
Query: 668 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 847
QR VS + +LTERA F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVE 201
Query: 848 KAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQNRIYLT 1024
KA+Q+++ I+ AEG+++AA ++ +L + G I+LRK+ AA++I+ ++ S+N YL
Sbjct: 202 KAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLP 261
Query: 1025 ADNLVL 1042
A VL
Sbjct: 262 AGQSVL 267
>ref|XP_541546.1| PREDICTED: similar to prohibitin [Canis familiaris].
Length = 272
Score = 204 bits (518), Expect = 2e-52
Identities = 108/246 (43%), Positives = 160/246 (65%), Gaps = 1/246 (0%)
Frame = +2
Query: 308 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 487
+ +++ V+ GHRA+ F+ GVQ D ++ EG HF IPW Q II+D +RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDWFRGVQ-DIVVGEGTHFLIPWVQKSIIFDCHSRPRNVPVITG 81
Query: 488 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 667
SKDLQ VNI LR+L +P +LP ++ +G DY+ERVLPSI E+LKSVVA F+A +LIT
Sbjct: 82 SKDLQNVNIILRILFQPVNSQLPGIFTSIGEDYDERVLPSITTEILKSVVAHFDAGELIT 141
Query: 668 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 847
QR VS + +L E+A F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLIEQAATFGLILDDVSLTHLTFGKEFTKAVEAKLVAQQEAERARFVVE 201
Query: 848 KAKQEQRQKIVQAEGEAEAARMLGEALSK-NPGYIKLRKIRAAQNISKTIATSQNRIYLT 1024
KA+Q++++ I+ AEG ++AA ++ +L+ G I+LRK+ AA++++ ++ S+N YL
Sbjct: 202 KAEQQKKEAIISAEGFSKAAELIANSLATGGDGLIELRKLEAAEDMAYQLSRSRNITYLP 261
Query: 1025 ADNLVL 1042
A VL
Sbjct: 262 AGQSVL 267
>ref|XP_851325.1| PREDICTED: similar to prohibitin [Canis familiaris].
Length = 204
Score = 156 bits (395), Expect = 3e-38
Identities = 84/195 (43%), Positives = 120/195 (61%)
Frame = +2
Query: 308 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 487
+ +++ V+ GHRA+ F+R G PII+D +RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGK-------------------PIIFDCCSRPRNVPVITG 63
Query: 488 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 667
SKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 64 SKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 123
Query: 668 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 847
QR VS + +LTERA F LILDDV++ L+F +E+T F+VE
Sbjct: 124 QRELVSRQVSDDLTERAATFGLILDDVSLMHLTFGKEFTEAVEAKQVAQQEAERARFVVE 183
Query: 848 KAKQEQRQKIVQAEG 892
KA+Q++++ I+ A+G
Sbjct: 184 KAEQQKKEAIISAKG 198
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,904,392
Number of extensions: 1692699
Number of successful extensions: 7208
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7162
Number of HSP's successfully gapped: 5
Length of query: 398
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 293
Effective length of database: 15,374,224
Effective search space: 4504647632
Effective search space used: 4504647632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000685
(1195 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009204.1| prohibitin-2 isoform 2 [Homo sapiens]. 492 e-139
Alignment gi|NP_001138303.1| prohibitin-2 isoform 1 [Homo sapiens]. 492 e-139
Alignment gi|NP_002625.1| prohibitin [Homo sapiens]. 223 2e-58
>ref|NP_009204.1| prohibitin-2 isoform 2 [Homo sapiens].
Length = 299
Score = 492 bits (1266), Expect = e-139
Identities = 261/299 (87%), Positives = 264/299 (88%)
Frame = +2
Query: 203 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 382
MAQNLKDLAGRLP+GPR YG+RESVFTVEGGHRAIFFNRIGGVQQ
Sbjct: 1 MAQNLKDLAGRLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQ 60
Query: 383 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 562
DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNA ELPSM
Sbjct: 61 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSM 120
Query: 563 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 742
YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
Sbjct: 121 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 180
Query: 743 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARMLGE 922
DVAITELSFSREYT FLVEKAKQEQRQKIVQAEGEAEAA+MLGE
Sbjct: 181 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGE 240
Query: 923 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 1099
ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIK KK
Sbjct: 241 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGKK 299
>ref|NP_001138303.1| prohibitin-2 isoform 1 [Homo sapiens].
Length = 299
Score = 492 bits (1266), Expect = e-139
Identities = 261/299 (87%), Positives = 264/299 (88%)
Frame = +2
Query: 203 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 382
MAQNLKDLAGRLP+GPR YG+RESVFTVEGGHRAIFFNRIGGVQQ
Sbjct: 1 MAQNLKDLAGRLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQ 60
Query: 383 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 562
DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNA ELPSM
Sbjct: 61 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSM 120
Query: 563 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 742
YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
Sbjct: 121 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 180
Query: 743 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARMLGE 922
DVAITELSFSREYT FLVEKAKQEQRQKIVQAEGEAEAA+MLGE
Sbjct: 181 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGE 240
Query: 923 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 1099
ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIK KK
Sbjct: 241 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGKK 299
>ref|NP_002625.1| prohibitin [Homo sapiens].
Length = 272
Score = 223 bits (569), Expect = 2e-58
Identities = 116/246 (47%), Positives = 167/246 (67%), Gaps = 1/246 (0%)
Frame = +2
Query: 308 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 487
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81
Query: 488 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 667
SKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 141
Query: 668 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 847
QR VS + +LTERA F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVE 201
Query: 848 KAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQNRIYLT 1024
KA+Q+++ I+ AEG+++AA ++ +L + G I+LRK+ AA++I+ ++ S+N YL
Sbjct: 202 KAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLP 261
Query: 1025 ADNLVL 1042
A VL
Sbjct: 262 AGQSVL 267
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,662,824
Number of extensions: 1642260
Number of successful extensions: 6735
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6695
Number of HSP's successfully gapped: 3
Length of query: 398
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 293
Effective length of database: 14,835,944
Effective search space: 4346931592
Effective search space used: 4346931592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000685
(1195 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031557.2| prohibitin-2 [Mus musculus]. 492 e-139
Alignment gi|NP_032857.1| prohibitin [Mus musculus]. 225 6e-59
Alignment gi|NP_001028937.1| prohibitin-like [Mus musculus]. 222 4e-58
>ref|NP_031557.2| prohibitin-2 [Mus musculus].
Length = 299
Score = 492 bits (1266), Expect = e-139
Identities = 261/299 (87%), Positives = 264/299 (88%)
Frame = +2
Query: 203 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 382
MAQNLKDLAGRLP+GPR YG+RESVFTVEGGHRAIFFNRIGGVQQ
Sbjct: 1 MAQNLKDLAGRLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQ 60
Query: 383 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 562
DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNA ELPSM
Sbjct: 61 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSM 120
Query: 563 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 742
YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
Sbjct: 121 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 180
Query: 743 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARMLGE 922
DVAITELSFSREYT FLVEKAKQEQRQKIVQAEGEAEAA+MLGE
Sbjct: 181 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGE 240
Query: 923 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 1099
ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIK KK
Sbjct: 241 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGKK 299
>ref|NP_032857.1| prohibitin [Mus musculus].
Length = 272
Score = 225 bits (573), Expect = 6e-59
Identities = 117/246 (47%), Positives = 167/246 (67%), Gaps = 1/246 (0%)
Frame = +2
Query: 308 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 487
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81
Query: 488 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 667
SKDLQ VNI+LR+L RP A +LP +Y +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 141
Query: 668 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 847
QR VS + +LTERA F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVE 201
Query: 848 KAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQNRIYLT 1024
KA+Q+++ I+ AEG+++AA ++ +L + G I+LRK+ AA++I+ ++ S+N YL
Sbjct: 202 KAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLP 261
Query: 1025 ADNLVL 1042
A VL
Sbjct: 262 AGQSVL 267
>ref|NP_001028937.1| prohibitin-like [Mus musculus].
Length = 271
Score = 222 bits (566), Expect = 4e-58
Identities = 116/245 (47%), Positives = 165/245 (67%), Gaps = 1/245 (0%)
Frame = +2
Query: 308 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 487
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q P+I+D R++PR I TG
Sbjct: 23 VSSALYNVDAGHRAVIFDRFHGVQ-DIVVGEGTHFLIPWVQKPVIFDCRSQPRNIPVITG 81
Query: 488 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 667
SKDLQ VNI+LR+L RP A +LP +Y +G DY+ERVLPSI +E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPHIYTNIGQDYDERVLPSITSEILKSVVARFDAGELIT 141
Query: 668 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 847
QR VS + +LTERA F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVE 201
Query: 848 KAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQNRIYLT 1024
KA+Q++ I+ AEG+A+AA ++ +L + G I+LRK+ AA++I+ ++ SQN YL
Sbjct: 202 KAEQQKVAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSQNVTYLP 261
Query: 1025 ADNLV 1039
V
Sbjct: 262 VGQTV 266
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,438,258
Number of extensions: 1341942
Number of successful extensions: 5413
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5366
Number of HSP's successfully gapped: 3
Length of query: 398
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 295
Effective length of database: 12,523,851
Effective search space: 3694536045
Effective search space used: 3694536045
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000685
(1195 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230485.1| prohibitin 2 [Sus scrofa]. 498 e-141
Alignment gi|XP_003131605.2| PREDICTED: prohibitin-like [Sus scrofa]. 198 4e-51
Alignment gi|XP_003131608.2| PREDICTED: prohibitin-like [Sus scrofa]. 168 5e-42
>ref|NP_001230485.1| prohibitin 2 [Sus scrofa].
Length = 299
Score = 498 bits (1282), Expect = e-141
Identities = 266/299 (88%), Positives = 266/299 (88%)
Frame = +2
Query: 203 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 382
MAQNLKDLAGRLPSGPR YGIRESVFTVEGGHRAIFFNRIGGVQQ
Sbjct: 1 MAQNLKDLAGRLPSGPRGMGTALKLLLGAGAVAYGIRESVFTVEGGHRAIFFNRIGGVQQ 60
Query: 383 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 562
DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM
Sbjct: 61 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 120
Query: 563 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 742
YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
Sbjct: 121 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 180
Query: 743 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARMLGE 922
DVAITELSFSREYT FLVEKAKQEQRQKIVQAEGEAEAARMLGE
Sbjct: 181 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAARMLGE 240
Query: 923 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 1099
ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK
Sbjct: 241 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 299
>ref|XP_003131605.2| PREDICTED: prohibitin-like [Sus scrofa].
Length = 263
Score = 198 bits (504), Expect = 4e-51
Identities = 110/246 (44%), Positives = 154/246 (62%), Gaps = 1/246 (0%)
Frame = +2
Query: 308 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 487
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81
Query: 488 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 667
SKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 141
Query: 668 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 847
QR VS + +LTERA F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVE 201
Query: 848 KAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQNRIYLT 1024
K V A+ + + +L + G I+LRK+ AA++I+ ++ S+N YL
Sbjct: 202 K---------VSAQPDGRSPSXXXNSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLP 252
Query: 1025 ADNLVL 1042
A VL
Sbjct: 253 AGQSVL 258
>ref|XP_003131608.2| PREDICTED: prohibitin-like [Sus scrofa].
Length = 232
Score = 168 bits (426), Expect = 5e-42
Identities = 88/158 (55%), Positives = 113/158 (71%), Gaps = 3/158 (1%)
Frame = +2
Query: 308 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 487
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81
Query: 488 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 667
SKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 141
Query: 668 QRAQVSLLIRRELTERAKDFSLILDDV---AITELSFS 772
QR VS + +LTERA F LILDDV AI LS S
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLEAIPRLSLS 179
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,232,897
Number of extensions: 1067959
Number of successful extensions: 4508
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4484
Number of HSP's successfully gapped: 3
Length of query: 398
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,829,335
Effective search space: 2622312495
Effective search space used: 2622312495
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000685
(1195 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 595 e-167
>Sscrofa_Chr05
|| Length = 111506441
Score = 595 bits (300), Expect = e-167
Identities = 320/329 (97%)
Strand = Plus / Plus
Query: 1 attcctgtgcgccaagctcgggtccgccgtgggtgggcnnnnnnntagggtttagaaggg 60
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 66187708 attcctgtgcgccaagctcgggtctgccgtgggtgggcgggggggtagggtttagaaggg 66187767
Query: 61 agcgcacttccggtgccctttctccagcaagcacctggggctcggaccctcgtgtgaagg 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 66187768 agcgcacttccggtgccctttctccagcaagcacctggggctcggaccttcgtgtgaagg 66187827
Query: 121 gtgcgatccgtaaactggagcgcggtaaaggcaggccggcacccgcttctgacctctggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66187828 gtgcgatccgtaaactggagcgcggtaaaggcaggccggcacccgcttctgacctctggt 66187887
Query: 181 gccgccggcctcaagatcggacatggcccagaacttgaaggacttagcgggacggctgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66187888 gccgccggcctcaagatcggacatggcccagaacttgaaggacttagcgggacggctgcc 66187947
Query: 241 ctccgggccccggggcatgggcacggcgctgaagctgctgctgggggccggcgccgtggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66187948 ctccgggccccggggcatgggcacggcgctgaagctgctgctgggggccggcgccgtggc 66188007
Query: 301 ctacggcatccgcgagtcggtgttcaccg 329
|||||||||||||||||||||||||||||
Sbjct: 66188008 ctacggcatccgcgagtcggtgttcaccg 66188036
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 493 agacctgcagatggtgaacatctccctgcgggtgctgtcccgacccaacgccatggagct 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66189848 agacctgcagatggtgaacatctccctgcgggtgctgtcccgacccaacgccatggagct 66189907
Query: 553 gcccagcatgtaccagcgcctggggctggactatgaggagcgagtgctgccctccattgt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66189908 gcccagcatgtaccagcgcctggggctggactatgaggagcgagtgctgccctccattgt 66189967
Query: 613 caacgaggtgctcaagagtgtggtggccaagttcaacgcctcccagctgatcacccagcg 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66189968 caacgaggtgctcaagagtgtggtggccaagttcaacgcctcccagctgatcacccagcg 66190027
Query: 673 ggcccaggt 681
|||||||||
Sbjct: 66190028 ggcccaggt 66190036
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 675 cccaggtgtccttgttgatccgaagggagctgacggagagggccaaggacttcagcctca 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66190412 cccaggtgtccttgttgatccgaagggagctgacggagagggccaaggacttcagcctca 66190471
Query: 735 tcctggacgatgtcgccatcactgagctgagcttcagccgggagtacacagcagctgtag 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66190472 tcctggacgatgtcgccatcactgagctgagcttcagccgggagtacacagcagctgtag 66190531
Query: 795 aagccaaacaagtgg 809
|||||||||||||||
Sbjct: 66190532 aagccaaacaagtgg 66190546
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 809 gctcagcaggaagcccagcgggcccagttcttggtagaaaaagcgaagcaggaacagcgg 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66190648 gctcagcaggaagcccagcgggcccagttcttggtagaaaaagcgaagcaggaacagcgg 66190707
Query: 869 caaaagattgtgcaggccgagggtgaggcagaggccgccagaatg 913
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66190708 caaaagattgtgcaggccgagggtgaggcagaggccgccagaatg 66190752
Score = 190 bits (96), Expect = 1e-45
Identities = 117/124 (94%)
Strand = Plus / Plus
Query: 1072 cagcgacagccttatcaagagtaagaagtgaacctggtaaccgaacactctgccaccagg 1131
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 66192274 cagcgacagccttatcaagagtaagaagtgaacctggtgaccgagcactctgccaccagg 66192333
Query: 1132 gaagaaatggatctgtttctcccctattttttgaggaaccacccgggggtccagcacacc 1191
|||||| ||||||||||||||||||| |||||||||| ||| || |||||||||||||||
Sbjct: 66192334 gaagaagtggatctgtttctcccctagtttttgaggagccagcctggggtccagcacacc 66192393
Query: 1192 ccca 1195
||||
Sbjct: 66192394 ccca 66192397
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 329 gtggaaggcgggcacagagccattttctttaatcggatcggaggcgtgcagcaggacacc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66188202 gtggaaggcgggcacagagccattttctttaatcggatcggaggcgtgcagcaggacacc 66188261
Query: 389 attctggccgagggccttcacttcagg 415
|||||||||||||||||||||||||||
Sbjct: 66188262 attctggccgagggccttcacttcagg 66188288
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 412 caggatcccctggttccagtaccctatcatctatgatattcgagccagaccccgaaaaat 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66188594 caggatcccctggttccagtaccctatcatctatgatattcgagccagaccccgaaaaat 66188653
Query: 472 ttcctcccccacaggctccaaag 494
|||||||||||||||||||||||
Sbjct: 66188654 ttcctcccccacaggctccaaag 66188676
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 991 gatcgccacgtcacagaatcgtatctatctcactgctgataaccttgtgctgaacctaca 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66191568 gatcgccacgtcacagaatcgtatctatctcactgctgataaccttgtgctgaacctaca 66191627
Query: 1051 ggatgaaagtttcacccgg 1069
|||||||||||||||||||
Sbjct: 66191628 ggatgaaagtttcacccgg 66191646
Score = 155 bits (78), Expect = 7e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 914 ctgggagaagctctgagcaagaaccctggctacatcaagctgcgcaagatccgggccgcc 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66191162 ctgggagaagctctgagcaagaaccctggctacatcaagctgcgcaagatccgggccgcc 66191221
Query: 974 cagaacatctccaagacg 991
||||||||||||||||||
Sbjct: 66191222 cagaacatctccaagacg 66191239
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,178,697
Number of extensions: 265
Number of successful extensions: 265
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 9
Length of query: 1195
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1174
Effective length of database: 2,808,413,156
Effective search space: 3297077045144
Effective search space used: 3297077045144
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)