Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000693
(1071 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,836,905
Number of extensions: 1492860
Number of successful extensions: 7389
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 7364
Number of HSP's successfully gapped: 0
Length of query: 357
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 254
Effective length of database: 14,273,310
Effective search space: 3625420740
Effective search space used: 3625420740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000693
(1071 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541600.2| PREDICTED: similar to Y53G8AR.8 [Canis familiar... 126 3e-29
>ref|XP_541600.2| PREDICTED: similar to Y53G8AR.8 [Canis familiaris].
Length = 400
Score = 126 bits (317), Expect = 3e-29
Identities = 79/165 (47%), Positives = 95/165 (57%), Gaps = 30/165 (18%)
Frame = +3
Query: 45 LHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKV 218
LH VA N+ T IR LSR PEG+Q+KGR+LLQFLAD F DV+A+REYLLRKQA K+
Sbjct: 151 LHLVAPRWNAGTRGIRGLSRAAAPEGNQKKGRSLLQFLADRFYDVQALREYLLRKQAWKM 210
Query: 219 HRKNR---------------------------FQDNEWIQS-GRGLSSLEFRKFREVPVQ 314
H+KNR FQ EWI+S RG SL+F K + VPV+
Sbjct: 211 HQKNRPFTYIRERYGPYAAGAYFILKLGGAVKFQGKEWIRSNARGHFSLDFLKLQTVPVE 270
Query: 315 AVDASGCAINYQGLDNLCECSGVEMGTLPSTWANGGPLVPSTCPS 449
AVDASGCA+NYQGLD+L + + L W P V C S
Sbjct: 271 AVDASGCAVNYQGLDSL-----LALKELQVLWLQRCPHVDDWCLS 310
Score = 103 bits (256), Expect = 4e-22
Identities = 47/55 (85%), Positives = 50/55 (90%)
Frame = +1
Query: 454 VALKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACLHHLQ 618
+ALKELQ L LQRCPHVDDWCL RLH LA SLQELSLAGCP++SERGLACLHHLQ
Sbjct: 288 LALKELQVLWLQRCPHVDDWCLSRLHPLASSLQELSLAGCPKISERGLACLHHLQ 342
Score = 75.1 bits (183), Expect = 1e-13
Identities = 35/46 (76%), Positives = 42/46 (91%)
Frame = +3
Query: 789 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 926
DISDLPAVS+P LTQILVEEMLP+C+V G+DWA+GLK+G EEQ +D
Sbjct: 348 DISDLPAVSNPGLTQILVEEMLPDCKVVGADWARGLKVGQEEQYQD 393
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,860,673
Number of extensions: 1539644
Number of successful extensions: 7359
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7334
Number of HSP's successfully gapped: 3
Length of query: 357
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 253
Effective length of database: 15,407,560
Effective search space: 3898112680
Effective search space used: 3898112680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000693
(1071 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161343.1| ATP synthase subunit s-like protein isoform ... 118 2e-51
Alignment gi|NP_060505.2| ATP synthase subunit s-like protein isoform 4 [... 103 5e-47
Alignment gi|NP_001161339.1| ATP synthase subunit s-like protein isoform ... 103 1e-45
Alignment gi|NP_001161342.1| ATP synthase subunit s-like protein isoform ... 119 6e-27
Alignment gi|NP_001161341.1| ATP synthase subunit s-like protein isoform ... 104 2e-22
Alignment gi|NP_001161340.1| ATP synthase subunit s-like protein isoform ... 100 4e-21
>ref|NP_001161343.1| ATP synthase subunit s-like protein isoform 5 [Homo sapiens].
Length = 230
Score = 118 bits (295), Expect(2) = 2e-51
Identities = 65/117 (55%), Positives = 80/117 (68%), Gaps = 3/117 (2%)
Frame = +3
Query: 24 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 197
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 198 RKQALKVHRKNRFQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCAINYQGLDNL 365
+++ KVH KNRF+D EWI+ + G S EF F EVPV+AVDA C INY+GLDNL
Sbjct: 61 QREMYKVHEKNRFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCDINYEGLDNL 117
Score = 103 bits (257), Expect(2) = 2e-51
Identities = 48/53 (90%), Positives = 50/53 (94%)
Frame = +1
Query: 460 LKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACLHHLQ 618
LKELQSLSLQRC HVDDWCL RL+ LADSLQELSLAGCPR+SERGLACLHHLQ
Sbjct: 120 LKELQSLSLQRCCHVDDWCLSRLYPLADSLQELSLAGCPRISERGLACLHHLQ 172
Score = 78.2 bits (191), Expect = 1e-14
Identities = 38/46 (82%), Positives = 40/46 (86%)
Frame = +3
Query: 789 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 926
DISDLPAVS+P LTQILVEEMLPNCEV G DWA+GLK G EEQ RD
Sbjct: 178 DISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGLKSGPEEQPRD 223
>ref|NP_060505.2| ATP synthase subunit s-like protein isoform 4 [Homo sapiens].
Length = 257
Score = 103 bits (257), Expect(2) = 5e-47
Identities = 65/144 (45%), Positives = 80/144 (55%), Gaps = 30/144 (20%)
Frame = +3
Query: 24 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 197
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 198 RKQALKVHRKNR---------------------------FQDNEWIQSGR-GLSSLEFRK 293
+++ KVH KNR F+D EWI+ + G S EF
Sbjct: 61 QREMYKVHEKNRSYTWLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWN 120
Query: 294 FREVPVQAVDASGCAINYQGLDNL 365
F EVPV+AVDA C INY+GLDNL
Sbjct: 121 FCEVPVEAVDAGDCDINYEGLDNL 144
Score = 103 bits (257), Expect(2) = 5e-47
Identities = 48/53 (90%), Positives = 50/53 (94%)
Frame = +1
Query: 460 LKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACLHHLQ 618
LKELQSLSLQRC HVDDWCL RL+ LADSLQELSLAGCPR+SERGLACLHHLQ
Sbjct: 147 LKELQSLSLQRCCHVDDWCLSRLYPLADSLQELSLAGCPRISERGLACLHHLQ 199
Score = 78.2 bits (191), Expect = 1e-14
Identities = 38/46 (82%), Positives = 40/46 (86%)
Frame = +3
Query: 789 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 926
DISDLPAVS+P LTQILVEEMLPNCEV G DWA+GLK G EEQ RD
Sbjct: 205 DISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGLKSGPEEQPRD 250
>ref|NP_001161339.1| ATP synthase subunit s-like protein isoform 1 [Homo sapiens].
Length = 263
Score = 103 bits (257), Expect(2) = 1e-45
Identities = 48/53 (90%), Positives = 50/53 (94%)
Frame = +1
Query: 460 LKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACLHHLQ 618
LKELQSLSLQRC HVDDWCL RL+ LADSLQELSLAGCPR+SERGLACLHHLQ
Sbjct: 153 LKELQSLSLQRCCHVDDWCLSRLYPLADSLQELSLAGCPRISERGLACLHHLQ 205
Score = 99.0 bits (245), Expect(2) = 1e-45
Identities = 57/129 (44%), Positives = 72/129 (55%), Gaps = 28/129 (21%)
Frame = +3
Query: 63 NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKVHRKNR--- 233
N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL+++ KVH KNR
Sbjct: 22 NGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLLQREMYKVHEKNRSYT 81
Query: 234 ------------------------FQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCA 338
F+D EWI+ + G S EF F EVPV+AVDA C
Sbjct: 82 WLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCD 141
Query: 339 INYQGLDNL 365
INY+GLDNL
Sbjct: 142 INYEGLDNL 150
Score = 78.2 bits (191), Expect = 1e-14
Identities = 38/46 (82%), Positives = 40/46 (86%)
Frame = +3
Query: 789 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 926
DISDLPAVS+P LTQILVEEMLPNCEV G DWA+GLK G EEQ RD
Sbjct: 211 DISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGLKSGPEEQPRD 256
>ref|NP_001161342.1| ATP synthase subunit s-like protein isoform 6 [Homo sapiens].
Length = 158
Score = 119 bits (297), Expect = 6e-27
Identities = 66/122 (54%), Positives = 82/122 (67%), Gaps = 3/122 (2%)
Frame = +3
Query: 24 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 197
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 198 RKQALKVHRKNRFQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCAINYQGLDNLCEC 374
+++ KVH KNRF+D EWI+ + G S EF F EVPV+AVDA C INY+GLDNL
Sbjct: 61 QREMYKVHEKNRFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCDINYEGLDNLRTS 120
Query: 375 SG 380
+G
Sbjct: 121 AG 122
Score = 57.4 bits (137), Expect = 2e-08
Identities = 25/40 (62%), Positives = 26/40 (65%)
Frame = +1
Query: 775 TSAGWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 894
TSAGW S T L CP SLR+WWRRCCP R TG RA
Sbjct: 119 TSAGWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 158
>ref|NP_001161341.1| ATP synthase subunit s-like protein isoform 3 [Homo sapiens].
Length = 185
Score = 104 bits (259), Expect = 2e-22
Identities = 66/149 (44%), Positives = 82/149 (55%), Gaps = 30/149 (20%)
Frame = +3
Query: 24 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 197
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 198 RKQALKVHRKNR---------------------------FQDNEWIQSGR-GLSSLEFRK 293
+++ KVH KNR F+D EWI+ + G S EF
Sbjct: 61 QREMYKVHEKNRSYTWLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWN 120
Query: 294 FREVPVQAVDASGCAINYQGLDNLCECSG 380
F EVPV+AVDA C INY+GLDNL +G
Sbjct: 121 FCEVPVEAVDAGDCDINYEGLDNLRTSAG 149
Score = 57.4 bits (137), Expect = 2e-08
Identities = 25/40 (62%), Positives = 26/40 (65%)
Frame = +1
Query: 775 TSAGWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 894
TSAGW S T L CP SLR+WWRRCCP R TG RA
Sbjct: 146 TSAGWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 185
>ref|NP_001161340.1| ATP synthase subunit s-like protein isoform 2 [Homo sapiens].
Length = 191
Score = 99.8 bits (247), Expect = 4e-21
Identities = 58/134 (43%), Positives = 74/134 (55%), Gaps = 28/134 (20%)
Frame = +3
Query: 63 NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKVHRKNR--- 233
N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL+++ KVH KNR
Sbjct: 22 NGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLLQREMYKVHEKNRSYT 81
Query: 234 ------------------------FQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCA 338
F+D EWI+ + G S EF F EVPV+AVDA C
Sbjct: 82 WLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCD 141
Query: 339 INYQGLDNLCECSG 380
INY+GLDNL +G
Sbjct: 142 INYEGLDNLRTSAG 155
Score = 57.4 bits (137), Expect = 2e-08
Identities = 25/40 (62%), Positives = 26/40 (65%)
Frame = +1
Query: 775 TSAGWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 894
TSAGW S T L CP SLR+WWRRCCP R TG RA
Sbjct: 152 TSAGWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 191
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,921,854
Number of extensions: 1506487
Number of successful extensions: 6999
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6964
Number of HSP's successfully gapped: 15
Length of query: 357
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 253
Effective length of database: 14,868,908
Effective search space: 3761833724
Effective search space used: 3761833724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000693
(1071 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079780.2| ATP synthase subunit s-like protein [Mus muscul... 100 2e-44
>ref|NP_079780.2| ATP synthase subunit s-like protein [Mus musculus].
Length = 257
Score = 99.8 bits (247), Expect(2) = 2e-44
Identities = 63/138 (45%), Positives = 78/138 (56%), Gaps = 31/138 (22%)
Frame = +3
Query: 45 LHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKV 218
LH AR N I +S V P+ S+ K RTLLQFL+DHF D++ +REYLL+KQ KV
Sbjct: 7 LHLGAREWNGRARRIHGMSELVTPDSSREKKRTLLQFLSDHFQDIQTLREYLLQKQISKV 66
Query: 219 HRKNR---------------------------FQD-NEWIQ-SGRGLSSLEFRKFREVPV 311
+R+NR FQD EWI+ + R E +KF+ VPV
Sbjct: 67 NRENRSFTNIQEKYGPYVAGAVFILKQGGAVKFQDKEEWIRPNNRSHFLAEIQKFQNVPV 126
Query: 312 QAVDASGCAINYQGLDNL 365
+AVDASGCAINYQGL NL
Sbjct: 127 EAVDASGCAINYQGLSNL 144
Score = 99.0 bits (245), Expect(2) = 2e-44
Identities = 45/53 (84%), Positives = 50/53 (94%)
Frame = +1
Query: 460 LKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACLHHLQ 618
LKEL+SLSLQRCP++DDWCL RL+ LA SLQELSLAGCPR+SERGLACLHHLQ
Sbjct: 147 LKELRSLSLQRCPNLDDWCLSRLYLLAGSLQELSLAGCPRISERGLACLHHLQ 199
Score = 69.7 bits (169), Expect = 4e-12
Identities = 34/46 (73%), Positives = 38/46 (82%)
Frame = +3
Query: 789 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 926
DISDLPAVS P LTQILVEEMLP+CEV G+DWAQ LKL ++Q D
Sbjct: 205 DISDLPAVSHPGLTQILVEEMLPHCEVLGADWAQNLKLEPDKQPPD 250
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,170,684
Number of extensions: 1233024
Number of successful extensions: 5766
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5731
Number of HSP's successfully gapped: 3
Length of query: 357
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 255
Effective length of database: 12,553,887
Effective search space: 3201241185
Effective search space used: 3201241185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000693
(1071 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127203.1| PREDICTED: ATP synthase subunit s-like prote... 212 1e-83
>ref|XP_003127203.1| PREDICTED: ATP synthase subunit s-like protein-like [Sus scrofa].
Length = 232
Score = 212 bits (540), Expect(2) = 1e-83
Identities = 114/141 (80%), Positives = 114/141 (80%), Gaps = 27/141 (19%)
Frame = +3
Query: 24 MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK 203
MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK
Sbjct: 1 MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK 60
Query: 204 QALKVHRKNR---------------------------FQDNEWIQSGRGLSSLEFRKFRE 302
QALKVHRKNR FQDNEWIQSGRGLSSLEFRKFRE
Sbjct: 61 QALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGRGLSSLEFRKFRE 120
Query: 303 VPVQAVDASGCAINYQGLDNL 365
VPVQAVDASGCAINYQGLDNL
Sbjct: 121 VPVQAVDASGCAINYQGLDNL 141
Score = 116 bits (291), Expect(2) = 1e-83
Identities = 54/55 (98%), Positives = 55/55 (100%)
Frame = +1
Query: 454 VALKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACLHHLQ 618
+ALKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACLHHLQ
Sbjct: 142 LALKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACLHHLQ 196
Score = 55.5 bits (132), Expect = 5e-08
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3
Query: 789 DISDLPAVSSPDLTQILVEEMLPNCE 866
DISDLPAVSSPDLTQILVEEMLPNCE
Sbjct: 202 DISDLPAVSSPDLTQILVEEMLPNCE 227
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,337,656
Number of extensions: 967964
Number of successful extensions: 4715
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4700
Number of HSP's successfully gapped: 3
Length of query: 357
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,854,232
Effective search space: 2275537624
Effective search space used: 2275537624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000693
(1071 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1626 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1626 bits (820), Expect = 0.0
Identities = 835/840 (99%)
Strand = Plus / Plus
Query: 232 ggtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccgga 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227249 ggtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccgga 45227308
Query: 292 agttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227309 agttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaag 45227368
Query: 352 gcctggacaacctctgtgagtgcagcggggtggagatgggcactctcccttccacatggg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227369 gcctggacaacctctgtgagtgcagcggggtggagatgggcactctcccttccacatggg 45227428
Query: 412 ccaacggagggcccttggtgccatccacctgtccttcctgcagtggccctgaaggagctc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227429 ccaacggagggcccttggtgccatccacctgtccttcctgcagtggccctgaaggagctc 45227488
Query: 472 cagtccctgtcactgcagcgctgtccccacgtggacgactggtgcctcggccgcctccac 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227489 cagtccctgtcactgcagcgctgtccccacgtggacgactggtgcctcggccgcctccac 45227548
Query: 532 cagctggccgactccttgcaagagctctcactggccggttgcccccgagtctctgaacga 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227549 cagctggccgactccttgcaagagctctcactggccggttgcccccgagtctctgaacga 45227608
Query: 592 ggcctagcctgcctccaccacctccagtgagaccccgacttcaggctgggggagggttag 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227609 ggcctagcctgcctccaccacctccagtgagaccccgacttcaggctgggggagggttag 45227668
Query: 652 gcagttcccatatccctgcctccatggcagaccttgagcgtgttttaggaagcggggcaa 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227669 gcagttcccatatccctgcctccatggcagaccttgagcgtgttttaggaagcggggcaa 45227728
Query: 712 gcactcctctgtccacacacgccatccttataccccgctcccccatctcacctcctctca 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227729 gcactcctctgtccacacacgccatccttataccccgctcccccatctcacctcctctca 45227788
Query: 772 ggaacctccgcaggctggatatctccgaccttcctgctgtgtccagtccggacctcactc 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227789 ggaacctccgcaggctggatatctccgaccttcctgctgtgtccagtccggacctcactc 45227848
Query: 832 agattttggtggaggagatgctgcccaactgtgaggttcgggggtctgactgggcccagg 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227849 agattttggtggaggagatgctgcccaactgtgaggttcgggggtctgactgggcccagg 45227908
Query: 892 gcctcaagttggggctggaagagcagtcccgagacccagccagcagcccggtccctgcct 951
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227909 gcctcaagttggggctggaggagcagtcccgagacccagccagcagcccggtccctgcct 45227968
Query: 952 agcctcagccccctctcagcaggctgacagctacttgtggcctccaacgacgttcactcc 1011
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 45227969 agcctcagccccctctcagcaggctgacagctacttgtggcctccaccgacgttcactca 45228028
Query: 1012 accaaagggttgggctgggatgaggggcactggcaggtctataccctgggctgacgttca 1071
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45228029 gccgaagggttgggctgggatgaggggcactggcaggtctataccctgggctgacgttca 45228088
Score = 1626 bits (820), Expect = 0.0
Identities = 835/840 (99%)
Strand = Plus / Minus
Query: 232 ggtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccgga 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45298137 ggtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccgga 45298078
Query: 292 agttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45298077 agttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaag 45298018
Query: 352 gcctggacaacctctgtgagtgcagcggggtggagatgggcactctcccttccacatggg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45298017 gcctggacaacctctgtgagtgcagcggggtggagatgggcactctcccttccacatggg 45297958
Query: 412 ccaacggagggcccttggtgccatccacctgtccttcctgcagtggccctgaaggagctc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297957 ccaacggagggcccttggtgccatccacctgtccttcctgcagtggccctgaaggagctc 45297898
Query: 472 cagtccctgtcactgcagcgctgtccccacgtggacgactggtgcctcggccgcctccac 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297897 cagtccctgtcactgcagcgctgtccccacgtggacgactggtgcctcggccgcctccac 45297838
Query: 532 cagctggccgactccttgcaagagctctcactggccggttgcccccgagtctctgaacga 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297837 cagctggccgactccttgcaagagctctcactggccggttgcccccgagtctctgaacga 45297778
Query: 592 ggcctagcctgcctccaccacctccagtgagaccccgacttcaggctgggggagggttag 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297777 ggcctagcctgcctccaccacctccagtgagaccccgacttcaggctgggggagggttag 45297718
Query: 652 gcagttcccatatccctgcctccatggcagaccttgagcgtgttttaggaagcggggcaa 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297717 gcagttcccatatccctgcctccatggcagaccttgagcgtgttttaggaagcggggcaa 45297658
Query: 712 gcactcctctgtccacacacgccatccttataccccgctcccccatctcacctcctctca 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297657 gcactcctctgtccacacacgccatccttataccccgctcccccatctcacctcctctca 45297598
Query: 772 ggaacctccgcaggctggatatctccgaccttcctgctgtgtccagtccggacctcactc 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297597 ggaacctccgcaggctggatatctccgaccttcctgctgtgtccagtccggacctcactc 45297538
Query: 832 agattttggtggaggagatgctgcccaactgtgaggttcgggggtctgactgggcccagg 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297537 agattttggtggaggagatgctgcccaactgtgaggttcgggggtctgactgggcccagg 45297478
Query: 892 gcctcaagttggggctggaagagcagtcccgagacccagccagcagcccggtccctgcct 951
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297477 gcctcaagttggggctggaggagcagtcccgagacccagccagcagcccggtccctgcct 45297418
Query: 952 agcctcagccccctctcagcaggctgacagctacttgtggcctccaacgacgttcactcc 1011
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 45297417 agcctcagccccctctcagcaggctgacagctacttgtggcctccaccgacgttcactca 45297358
Query: 1012 accaaagggttgggctgggatgaggggcactggcaggtctataccctgggctgacgttca 1071
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297357 gccgaagggttgggctgggatgaggggcactggcaggtctataccctgggctgacgttca 45297298
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 41 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224724 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 45224783
Query: 101 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224784 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 45224843
Query: 161 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224844 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 45224903
Query: 221 ccgaaaaaaccggt 234
||||||||||||||
Sbjct: 45224904 ccgaaaaaaccggt 45224917
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 41 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300663 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 45300604
Query: 101 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300603 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 45300544
Query: 161 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300543 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 45300484
Query: 221 ccgaaaaaaccggt 234
||||||||||||||
Sbjct: 45300483 ccgaaaaaaccggt 45300470
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 8 gcttaattccagcaagatggcggcgtccagggcg 41
||||||||||||||||||||||||||||||||||
Sbjct: 45223449 gcttaattccagcaagatggcggcgtccagggcg 45223482
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 8 gcttaattccagcaagatggcggcgtccagggcg 41
||||||||||||||||||||||||||||||||||
Sbjct: 45301940 gcttaattccagcaagatggcggcgtccagggcg 45301907
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,469,045
Number of extensions: 173
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 6
Length of query: 1071
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1050
Effective length of database: 2,808,413,156
Effective search space: 2948833813800
Effective search space used: 2948833813800
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)