Animal-Genome cDNA 20110601C-000710

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000710
         (993 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776558.1| polyubiquitin-B [Bos taurus].                        446   e-125
Alignment   gi|NP_001193236.1| polyubiquitin-C [Bos taurus].                     445   e-125
Alignment   gi|XP_002695905.1| PREDICTED: Os05g0242100-like [Bos taurus].        314   9e-86
Alignment   gi|XP_002702199.1| PREDICTED: Os05g0242100-like [Bos taurus].        314   9e-86
Alignment   gi|XP_002701748.1| PREDICTED: Os05g0242100-like [Bos taurus].        265   4e-71
Alignment   gi|XP_002694610.1| PREDICTED: Os05g0242100-like [Bos taurus].        258   7e-69
Alignment   gi|XP_001251963.2| PREDICTED: ubiquitin B-like, partial [Bos ta...   160   2e-39
Alignment   gi|XP_002694527.1| PREDICTED: ubiquitin B-like [Bos taurus].         152   4e-37
Alignment   gi|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos tau...   151   7e-37
Alignment   gi|NP_777203.1| ubiquitin-40S ribosomal protein S27a [Bos tauru...   151   1e-36

>ref|NP_776558.1| polyubiquitin-B [Bos taurus].
          Length = 305

 Score =  446 bits (1147), Expect = e-125
 Identities = 230/237 (97%), Positives = 231/237 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTL DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLFDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 794
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 305



 Score =  442 bits (1137), Expect = e-124
 Identities = 227/228 (99%), Positives = 227/228 (99%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTL DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLFDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|NP_001193236.1| polyubiquitin-C [Bos taurus].
          Length = 690

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 324

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 325 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 221 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 281 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 340

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 341 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 400

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 401 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84   LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 297  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 356

Query: 264  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 357  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 416

Query: 444  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 417  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 476

Query: 624  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 477  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84   LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 373  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 264  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 433  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 492

Query: 444  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 493  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 552

Query: 624  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 553  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84   LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 449  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508

Query: 264  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 509  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 568

Query: 444  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 569  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 628

Query: 624  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 629  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  298 bits (764), Expect = 4e-81
 Identities = 154/161 (95%), Positives = 156/161 (96%)
 Frame = +3

Query: 84   LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 525  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 584

Query: 264  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 585  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 644

Query: 444  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 566
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 645  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 685


>ref|XP_002695905.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 460

 Score =  314 bits (804), Expect = 9e-86
 Identities = 170/234 (72%), Positives = 182/234 (77%)
 Frame = -2

Query: 800 ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVT 621
           +L  TPQTEDQ++  LFLDVVIRKSAAIFQLLA KDEPLLV GNA            GVT
Sbjct: 227 DLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVT 286

Query: 620 GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 441
           GLHLQGDGLAGQGLHEDLHTTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLVGGN
Sbjct: 287 GLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVGGN 346

Query: 440 AXXXXXXXXXXXXGVTGLHLQSDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 261
           A            GVTGLH Q DGLAGQGLHE+LHTTPQT++Q++G LFLDVVIRKSAAI
Sbjct: 347 ALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLHTTPQTEDQVQGRLFLDVVIRKSAAI 406

Query: 260 LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHFDL 99
            QLLA KDEPLLV GNA            GVTGLHLQGDGLAGQG HEDLHFDL
Sbjct: 407 FQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHLQGDGLAGQGFHEDLHFDL 460



 Score =  308 bits (789), Expect = 5e-84
 Identities = 167/232 (71%), Positives = 180/232 (77%)
 Frame = -2

Query: 803 GELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGV 624
           G+ A TPQT+DQ++  LFLDVVIRKSAAIFQLLA KDEPLLV GNA            GV
Sbjct: 150 GKSATTPQTKDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGV 209

Query: 623 TGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGG 444
           TGLH QGDGLAGQGLHEDLHTTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLV G
Sbjct: 210 TGLHFQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRG 269

Query: 443 NAXXXXXXXXXXXXGVTGLHLQSDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAA 264
           NA            GVTGLHLQ DGLAGQGLHEDLHTTPQT++Q++G LFLDVVIRKSAA
Sbjct: 270 NAFLILDLGLHVLDGVTGLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAA 329

Query: 263 ILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 108
           I QLLA KDEPLLVGGNA            GVTGLH QGDGLAGQGLHE+LH
Sbjct: 330 IFQLLAGKDEPLLVGGNALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLH 381


>ref|XP_002702199.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 460

 Score =  314 bits (804), Expect = 9e-86
 Identities = 170/234 (72%), Positives = 182/234 (77%)
 Frame = -2

Query: 800 ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVT 621
           +L  TPQTEDQ++  LFLDVVIRKSAAIFQLLA KDEPLLV GNA            GVT
Sbjct: 227 DLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVT 286

Query: 620 GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 441
           GLHLQGDGLAGQGLHEDLHTTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLVGGN
Sbjct: 287 GLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVGGN 346

Query: 440 AXXXXXXXXXXXXGVTGLHLQSDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 261
           A            GVTGLH Q DGLAGQGLHE+LHTTPQT++Q++G LFLDVVIRKSAAI
Sbjct: 347 ALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLHTTPQTEDQVQGRLFLDVVIRKSAAI 406

Query: 260 LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHFDL 99
            QLLA KDEPLLV GNA            GVTGLHLQGDGLAGQG HEDLHFDL
Sbjct: 407 FQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHLQGDGLAGQGFHEDLHFDL 460



 Score =  308 bits (789), Expect = 5e-84
 Identities = 167/232 (71%), Positives = 180/232 (77%)
 Frame = -2

Query: 803 GELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGV 624
           G+ A TPQT+DQ++  LFLDVVIRKSAAIFQLLA KDEPLLV GNA            GV
Sbjct: 150 GKSATTPQTKDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGV 209

Query: 623 TGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGG 444
           TGLH QGDGLAGQGLHEDLHTTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLV G
Sbjct: 210 TGLHFQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRG 269

Query: 443 NAXXXXXXXXXXXXGVTGLHLQSDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAA 264
           NA            GVTGLHLQ DGLAGQGLHEDLHTTPQT++Q++G LFLDVVIRKSAA
Sbjct: 270 NAFLILDLGLHVLDGVTGLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAA 329

Query: 263 ILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 108
           I QLLA KDEPLLVGGNA            GVTGLH QGDGLAGQGLHE+LH
Sbjct: 330 IFQLLAGKDEPLLVGGNALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLH 381


>ref|XP_002701748.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 752

 Score =  265 bits (678), Expect = 4e-71
 Identities = 147/268 (54%), Positives = 181/268 (67%)
 Frame = -2

Query: 911  FGQVQLLLKLVISKLKWGQMARVQSNAISGHYECKTGELAATPQTEDQMESGLFLDVVIR 732
            +G    +L L +  L       +QS+ ++G  +    +L  T + EDQ++SGLFLDVV+R
Sbjct: 352  WGDALFVLDLGLDVLDGVTGLHLQSDGLAG--QGLHEDLHPTSEAEDQVQSGLFLDVVVR 409

Query: 731  KSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQ 552
            + AAIFQL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH T +
Sbjct: 410  QGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSE 469

Query: 551  TQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQSD 372
             ++Q++SGLFLDVV+R+ AAIFQL   KD+PLLV G+A            GVTGLHLQ D
Sbjct: 470  AEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGD 529

Query: 371  GLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXX 192
            GLAGQGLHEDLH T + ++Q++ GLFLDVV+R+ A I QL   KD+PLLV G+A      
Sbjct: 530  GLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDL 589

Query: 191  XXXXXXGVTGLHLQGDGLAGQGLHEDLH 108
                  GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 590  GLDVLDGVTGLHLQGDGLAGQGLHEDLH 617



 Score =  263 bits (672), Expect = 2e-70
 Identities = 139/223 (62%), Positives = 164/223 (73%)
 Frame = -2

Query: 776 EDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDG 597
           +DQ++SGLFLDVV+R+ AAIFQL   KD+PLLV G+A            GVTGLHLQGDG
Sbjct: 15  QDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDG 74

Query: 596 LAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXX 417
           LAGQGLHEDLH T + ++Q++SGLFLDVV+R+ AAIFQL   KD+PLLV G+A       
Sbjct: 75  LAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLG 134

Query: 416 XXXXXGVTGLHLQSDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKD 237
                GVTGLHLQSDGLAGQGLHEDLH T + ++Q++ GLFLDVV+R+ AAI QL   KD
Sbjct: 135 LDVLDGVTGLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKD 194

Query: 236 EPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 108
           +PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 195 QPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLH 237



 Score =  262 bits (669), Expect = 4e-70
 Identities = 139/231 (60%), Positives = 165/231 (71%)
 Frame = -2

Query: 800  ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVT 621
            +L  T + EDQ++SGLFLDVV+R+ A IFQL   KD+PLLV G+A            GVT
Sbjct: 311  DLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 370

Query: 620  GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 441
            GLHLQ DGLAGQGLHEDLH T + ++Q++SGLFLDVV+R+ AAIFQL   KD+PLLV G+
Sbjct: 371  GLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGD 430

Query: 440  AXXXXXXXXXXXXGVTGLHLQSDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 261
            A            GVTGLHLQ DGLAGQGLHEDLH T + ++Q++ GLFLDVV+R+ AAI
Sbjct: 431  ALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAI 490

Query: 260  LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 108
             QL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 491  FQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLH 541



 Score =  261 bits (668), Expect = 5e-70
 Identities = 139/231 (60%), Positives = 165/231 (71%)
 Frame = -2

Query: 800 ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVT 621
           +L  T + EDQ++SGL LDVV+R+ A IFQL   KD+PLLV G+A            GVT
Sbjct: 235 DLHPTSEAEDQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 294

Query: 620 GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 441
           GLHLQGDGLAGQGLHEDLH T + ++Q++SGLFLDVV+R+ A IFQL   KD+PLLV G+
Sbjct: 295 GLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGD 354

Query: 440 AXXXXXXXXXXXXGVTGLHLQSDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 261
           A            GVTGLHLQSDGLAGQGLHEDLH T + ++Q++ GLFLDVV+R+ AAI
Sbjct: 355 ALFVLDLGLDVLDGVTGLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAI 414

Query: 260 LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 108
            QL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 415 FQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLH 465



 Score =  259 bits (663), Expect = 2e-69
 Identities = 138/231 (59%), Positives = 164/231 (70%)
 Frame = -2

Query: 800 ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVT 621
           +L  T + EDQ++SGLFLDVV+R+ AAIFQL   KD+PLLV G+A            GVT
Sbjct: 83  DLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 142

Query: 620 GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 441
           GLHLQ DGLAGQGLHEDLH T + ++Q++SGLFLDVV+R+ AAIFQL   KD+PLLV G+
Sbjct: 143 GLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGD 202

Query: 440 AXXXXXXXXXXXXGVTGLHLQSDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 261
           A            GVTGLHLQ DGLAGQGLHEDLH T + ++Q++ GL LDVV+R+ A I
Sbjct: 203 ALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAPI 262

Query: 260 LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 108
            QL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 263 FQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLH 313



 Score =  259 bits (661), Expect = 3e-69
 Identities = 144/268 (53%), Positives = 178/268 (66%)
 Frame = -2

Query: 911 FGQVQLLLKLVISKLKWGQMARVQSNAISGHYECKTGELAATPQTEDQMESGLFLDVVIR 732
           +G    +L L +  L       +QS+ ++G  +    +L  T + EDQ++SGLFLDVV+R
Sbjct: 124 WGDALFVLDLGLDVLDGVTGLHLQSDGLAG--QGLHEDLHPTSEAEDQVQSGLFLDVVVR 181

Query: 731 KSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQ 552
           + AAIFQL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH T +
Sbjct: 182 QGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSE 241

Query: 551 TQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQSD 372
            ++Q++SGL LDVV+R+ A IFQL   KD+PLLV G+A            GVTGLHLQ D
Sbjct: 242 AEDQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGD 301

Query: 371 GLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXX 192
           GLAGQGLHEDLH T + ++Q++ GLFLDVV+R+ A I QL   KD+PLLV G+A      
Sbjct: 302 GLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDL 361

Query: 191 XXXXXXGVTGLHLQGDGLAGQGLHEDLH 108
                 GVTGLHLQ DGLAGQGLHEDLH
Sbjct: 362 GLDVLDGVTGLHLQSDGLAGQGLHEDLH 389



 Score =  251 bits (642), Expect = 5e-67
 Identities = 133/231 (57%), Positives = 161/231 (69%)
 Frame = -2

Query: 800  ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVT 621
            +L  T + EDQ++SGLFLDVV+R+ AAIFQL   KD+PLLV G+A            GVT
Sbjct: 463  DLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 522

Query: 620  GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 441
            GLHLQGDGLAGQGLHEDLH T + ++Q++SGLFLDVV+R+ A IFQL   KD+PLLV G+
Sbjct: 523  GLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGD 582

Query: 440  AXXXXXXXXXXXXGVTGLHLQSDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 261
            A            GVTGLHLQ DGLAGQGLHEDLH T + ++Q++ GL LDVV+R+ AAI
Sbjct: 583  ALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAAI 642

Query: 260  LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 108
             QL   KD+PLLV G+A            GVTGLHLQ DG   +GLH+DLH
Sbjct: 643  FQLFPGKDQPLLVWGDAFFFLYLPLDVLDGVTGLHLQSDGFTSEGLHKDLH 693



 Score =  172 bits (437), Expect = 3e-43
 Identities = 90/159 (56%), Positives = 112/159 (70%)
 Frame = -2

Query: 800  ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVT 621
            +L  T + EDQ++SGLFLDVV+R+ A IFQL   KD+PLLV G+A            GVT
Sbjct: 539  DLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 598

Query: 620  GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 441
            GLHLQGDGLAGQGLHEDLH T + ++Q++SGL LDVV+R+ AAIFQL   KD+PLLV G+
Sbjct: 599  GLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAAIFQLFPGKDQPLLVWGD 658

Query: 440  AXXXXXXXXXXXXGVTGLHLQSDGLAGQGLHEDLHTTPQ 324
            A            GVTGLHLQSDG   +GLH+DLH++ +
Sbjct: 659  AFFFLYLPLDVLDGVTGLHLQSDGFTSEGLHKDLHSSSE 697


>ref|XP_002694610.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 481

 Score =  258 bits (658), Expect = 7e-69
 Identities = 143/268 (53%), Positives = 177/268 (66%)
 Frame = -2

Query: 911 FGQVQLLLKLVISKLKWGQMARVQSNAISGHYECKTGELAATPQTEDQMESGLFLDVVIR 732
           +G    +L L +  L       +QS+ ++G  +    +L  T + EDQ++SGLFLDVV+R
Sbjct: 197 WGDALFVLDLGLDVLDGVTGLHLQSDGLAG--QGLHEDLHPTSEAEDQVQSGLFLDVVVR 254

Query: 731 KSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQ 552
           + A IFQL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH T +
Sbjct: 255 QGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSE 314

Query: 551 TQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQSD 372
            ++Q++SGL LDVV+R+ A IFQL   KD+PLLV G+A            GVTGLHLQ D
Sbjct: 315 AEDQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGD 374

Query: 371 GLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXX 192
           GLAGQGLHEDLH T + ++Q++ GLFLDVV+R+ A I QL   KD+PLLV G+A      
Sbjct: 375 GLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDL 434

Query: 191 XXXXXXGVTGLHLQGDGLAGQGLHEDLH 108
                 GVTGLHLQGDG AGQGLHEDLH
Sbjct: 435 ALDVLDGVTGLHLQGDGFAGQGLHEDLH 462



 Score =  254 bits (650), Expect = 6e-68
 Identities = 139/244 (56%), Positives = 168/244 (68%)
 Frame = -2

Query: 839 SNAISGHYECKTGELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXX 660
           S+A SG +E     +  + + EDQ++SGLFLDVV+R+ A IFQL   KD+PLLV G+A  
Sbjct: 148 SDAGSGQWE-----VGDSKKAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALF 202

Query: 659 XXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQL 480
                     GVTGLHLQ DGLAGQGLHEDLH T + ++Q++SGLFLDVV+R+ A IFQL
Sbjct: 203 VLDLGLDVLDGVTGLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQL 262

Query: 479 LACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQSDGLAGQGLHEDLHTTPQTQNQMEGG 300
              KD+PLLV G+A            GVTGLHLQ DGLAGQGLHEDLH T + ++Q++ G
Sbjct: 263 FPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSG 322

Query: 299 LFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLH 120
           L LDVV+R+ A I QL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLH
Sbjct: 323 LLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLH 382

Query: 119 EDLH 108
           EDLH
Sbjct: 383 EDLH 386



 Score =  176 bits (447), Expect = 2e-44
 Identities = 93/159 (58%), Positives = 111/159 (69%)
 Frame = -2

Query: 800 ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVT 621
           +L  T + EDQ++SGL LDVV+R+ A IFQL   KD+PLLV G+A            GVT
Sbjct: 308 DLHPTSEAEDQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 367

Query: 620 GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 441
           GLHLQGDGLAGQGLHEDLH T + ++Q++SGLFLDVV+R+ A IFQL   KD+PLLV G+
Sbjct: 368 GLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGD 427

Query: 440 AXXXXXXXXXXXXGVTGLHLQSDGLAGQGLHEDLHTTPQ 324
           A            GVTGLHLQ DG AGQGLHEDLH T +
Sbjct: 428 ALFVLDLALDVLDGVTGLHLQGDGFAGQGLHEDLHPTSE 466


>ref|XP_001251963.2| PREDICTED: ubiquitin B-like, partial [Bos taurus].
          Length = 88

 Score =  160 bits (405), Expect = 2e-39
 Identities = 81/86 (94%), Positives = 83/86 (96%)
 Frame = +3

Query: 78  QRLCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 257
           + L +HSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQL
Sbjct: 2   RHLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQL 61

Query: 258 EDGRTLSDYNIQKESTLHLVLRLRGG 335
           EDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 62  EDGRTLSDYNIQKESTLHLVLRLRGG 87



 Score =  154 bits (389), Expect = 1e-37
 Identities = 78/86 (90%), Positives = 80/86 (93%)
 Frame = +3

Query: 537 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 716
           HL +  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLE
Sbjct: 3   HLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLE 62

Query: 717 DGRTLSDYNIQKESTLHLVLRLRGGC 794
           DGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct: 63  DGRTLSDYNIQKESTLHLVLRLRGGC 88



 Score =  150 bits (380), Expect = 1e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +3

Query: 309 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 488
           HL +  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLE
Sbjct: 3   HLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLE 62

Query: 489 DGRTLSDYNIQKESTLHLVLRLRGG 563
           DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 63  DGRTLSDYNIQKESTLHLVLRLRGG 87


>ref|XP_002694527.1| PREDICTED: ubiquitin B-like [Bos taurus].
          Length = 77

 Score =  152 bits (384), Expect = 4e-37
 Identities = 76/77 (98%), Positives = 76/77 (98%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGGC 794
           IQKESTLHLVLRLRGGC
Sbjct: 61  IQKESTLHLVLRLRGGC 77



 Score =  149 bits (375), Expect = 5e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGG 335
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  149 bits (375), Expect = 5e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGG 563
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos taurus].
          Length = 128

 Score =  151 bits (382), Expect = 7e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGM 338
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 7e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGGM 566
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_777203.1| ubiquitin-40S ribosomal protein S27a [Bos taurus].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGG 335
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGG 563
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,087,270
Number of extensions: 1221408
Number of successful extensions: 3898
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 3844
Number of HSP's successfully gapped: 115
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000710
         (993 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536651.2| PREDICTED: similar to ubiquitin B precursor iso...   446   e-125
Alignment   gi|XP_853060.1| PREDICTED: similar to CG11624-PA, isoform A [Ca...   445   e-125
Alignment   gi|XP_863683.1| PREDICTED: similar to ubiquitin B precursor iso...   301   6e-82
Alignment   gi|XP_863640.1| PREDICTED: similar to ubiquitin B precursor iso...   284   1e-76
Alignment   gi|XP_851119.1| PREDICTED: similar to polyubiquitin [Canis fami...   164   2e-40
Alignment   gi|XP_531829.2| PREDICTED: similar to ubiquitin and ribosomal p...   155   7e-38
Alignment   gi|XP_852564.1| PREDICTED: similar to ubiquitin B precursor [Ca...   152   4e-37
Alignment   gi|NP_001121567.1| ubiquitin-60S ribosomal protein L40 precurso...   151   8e-37
Alignment   gi|NP_001030325.1| hypothetical protein LOC612529 [Canis lupus ...   151   8e-37
Alignment   gi|XP_538142.1| PREDICTED: similar to ubiquitin and ribosomal p...   146   3e-35

>ref|XP_536651.2| PREDICTED: similar to ubiquitin B precursor isoform 1 [Canis
           familiaris].
          Length = 229

 Score =  446 bits (1146), Expect = e-125
 Identities = 228/229 (99%), Positives = 228/229 (99%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 794
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229



 Score =  298 bits (763), Expect = 5e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 563
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_853060.1| PREDICTED: similar to CG11624-PA, isoform A [Canis familiaris].
          Length = 381

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 324

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 325 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380



 Score =  444 bits (1143), Expect = e-125
 Identities = 228/228 (100%), Positives = 228/228 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  298 bits (764), Expect = 4e-81
 Identities = 154/161 (95%), Positives = 156/161 (96%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 221 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 281 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 340

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 566
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 341 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 381


>ref|XP_863683.1| PREDICTED: similar to ubiquitin B precursor isoform 3 [Canis
           familiaris].
          Length = 153

 Score =  301 bits (771), Expect = 6e-82
 Identities = 153/153 (100%), Positives = 153/153 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 695
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 696 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 794
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 153



 Score =  298 bits (762), Expect = 7e-81
 Identities = 152/152 (100%), Positives = 152/152 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 563
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score =  151 bits (382), Expect = 8e-37
 Identities = 78/84 (92%), Positives = 79/84 (94%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGG 335
           GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGG 152


>ref|XP_863640.1| PREDICTED: similar to ubiquitin B precursor isoform 2 [Canis
           familiaris].
          Length = 181

 Score =  284 bits (726), Expect = 1e-76
 Identities = 152/181 (83%), Positives = 152/181 (83%), Gaps = 28/181 (15%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE---------------------------- 611
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE                            
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLESTLHLVLRLRGGMQIFVKTLTGKTITLE 120

Query: 612 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 180

Query: 792 C 794
           C
Sbjct: 181 C 181



 Score =  280 bits (717), Expect = 1e-75
 Identities = 151/180 (83%), Positives = 151/180 (83%), Gaps = 28/180 (15%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE---------------------------- 383
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE                            
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLESTLHLVLRLRGGMQIFVKTLTGKTITLE 120

Query: 384 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 563
           VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 180



 Score =  151 bits (382), Expect = 8e-37
 Identities = 78/84 (92%), Positives = 79/84 (94%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 97  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 156

Query: 264 GRTLSDYNIQKESTLHLVLRLRGG 335
           GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 157 GRTLSDYNIQKESTLHLVLRLRGG 180


>ref|XP_851119.1| PREDICTED: similar to polyubiquitin [Canis familiaris].
          Length = 111

 Score =  164 bits (414), Expect = 2e-40
 Identities = 84/91 (92%), Positives = 87/91 (95%)
 Frame = +3

Query: 291 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 470
           +K +TLHLVL LRGGMQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIF
Sbjct: 11  KKCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIF 70

Query: 471 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 563
           A KQLEDG TLSDYNIQKESTLHLVLRLRGG
Sbjct: 71  ASKQLEDGCTLSDYNIQKESTLHLVLRLRGG 101



 Score =  164 bits (414), Expect = 2e-40
 Identities = 84/91 (92%), Positives = 87/91 (95%)
 Frame = +3

Query: 519 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 698
           +K +TLHLVL LRGGMQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIF
Sbjct: 11  KKCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIF 70

Query: 699 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           A KQLEDG TLSDYNIQKESTLHLVLRLRGG
Sbjct: 71  ASKQLEDGCTLSDYNIQKESTLHLVLRLRGG 101



 Score =  145 bits (366), Expect = 6e-35
 Identities = 76/84 (90%), Positives = 77/84 (91%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           LCL     MQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIFA KQLED
Sbjct: 20  LCLRGG--MQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIFASKQLED 77

Query: 264 GRTLSDYNIQKESTLHLVLRLRGG 335
           G TLSDYNIQKESTLHLVLRLRGG
Sbjct: 78  GCTLSDYNIQKESTLHLVLRLRGG 101


>ref|XP_531829.2| PREDICTED: similar to ubiquitin and ribosomal protein S27a
           precursor [Canis familiaris].
          Length = 228

 Score =  155 bits (391), Expect = 7e-38
 Identities = 78/84 (92%), Positives = 80/84 (95%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           +C  +  KMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 65  ICGGTAAKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 124

Query: 264 GRTLSDYNIQKESTLHLVLRLRGG 335
           GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 125 GRTLSDYNIQKESTLHLVLRLRGG 148



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 73  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 132

Query: 516 IQKESTLHLVLRLRGG 563
           IQKESTLHLVLRLRGG
Sbjct: 133 IQKESTLHLVLRLRGG 148



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 73  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 132

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 133 IQKESTLHLVLRLRGG 148


>ref|XP_852564.1| PREDICTED: similar to ubiquitin B precursor [Canis familiaris].
          Length = 87

 Score =  152 bits (385), Expect = 4e-37
 Identities = 76/79 (96%), Positives = 78/79 (98%)
 Frame = +3

Query: 99  QVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 278
           QVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS
Sbjct: 8   QVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 67

Query: 279 DYNIQKESTLHLVLRLRGG 335
           DYNIQK+STLHL+L LRGG
Sbjct: 68  DYNIQKKSTLHLILHLRGG 86



 Score =  150 bits (380), Expect = 1e-36
 Identities = 74/77 (96%), Positives = 76/77 (98%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 11  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 70

Query: 744 IQKESTLHLVLRLRGGC 794
           IQK+STLHL+L LRGGC
Sbjct: 71  IQKKSTLHLILHLRGGC 87



 Score =  147 bits (371), Expect = 2e-35
 Identities = 73/76 (96%), Positives = 75/76 (98%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 11  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 70

Query: 516 IQKESTLHLVLRLRGG 563
           IQK+STLHL+L LRGG
Sbjct: 71  IQKKSTLHLILHLRGG 86


>ref|NP_001121567.1| ubiquitin-60S ribosomal protein L40 precursor [Canis lupus
           familiaris].
          Length = 128

 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGM 338
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGGM 566
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_001030325.1| hypothetical protein LOC612529 [Canis lupus familiaris].
          Length = 128

 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGM 338
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGGM 566
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|XP_538142.1| PREDICTED: similar to ubiquitin and ribosomal protein S27a
           precursor [Canis familiaris].
          Length = 161

 Score =  146 bits (369), Expect = 3e-35
 Identities = 74/80 (92%), Positives = 76/80 (95%)
 Frame = +3

Query: 96  SQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 275
           ++ KMQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 2   AEAKMQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTL 61

Query: 276 SDYNIQKESTLHLVLRLRGG 335
           SDYNIQKEST HLVLRLRGG
Sbjct: 62  SDYNIQKESTPHLVLRLRGG 81



 Score =  143 bits (361), Expect = 2e-34
 Identities = 73/76 (96%), Positives = 73/76 (96%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 6   MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65

Query: 516 IQKESTLHLVLRLRGG 563
           IQKEST HLVLRLRGG
Sbjct: 66  IQKESTPHLVLRLRGG 81



 Score =  143 bits (361), Expect = 2e-34
 Identities = 73/76 (96%), Positives = 73/76 (96%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 6   MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65

Query: 744 IQKESTLHLVLRLRGG 791
           IQKEST HLVLRLRGG
Sbjct: 66  IQKESTPHLVLRLRGG 81


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,660,639
Number of extensions: 1212100
Number of successful extensions: 3912
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 3862
Number of HSP's successfully gapped: 87
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000710
         (993 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_061828.1| polyubiquitin-B precursor [Homo sapiens].            448   e-126
Alignment   gi|NP_066289.2| polyubiquitin-C [Homo sapiens].                      445   e-125
Alignment   gi|NP_003324.1| ubiquitin-60S ribosomal protein L40 precursor [...   151   8e-37
Alignment   gi|NP_001029102.1| ubiquitin-60S ribosomal protein L40 precurso...   151   8e-37
Alignment   gi|NP_001170884.1| ubiquitin-40S ribosomal protein S27a precurs...   151   1e-36
Alignment   gi|NP_002945.1| ubiquitin-40S ribosomal protein S27a precursor ...   151   1e-36
Alignment   gi|NP_001129064.1| ubiquitin-40S ribosomal protein S27a precurs...   151   1e-36
Alignment   gi|NP_006147.1| NEDD8 precursor [Homo sapiens].                       96   4e-20
Alignment   gi|NP_006389.2| ubiquitin D [Homo sapiens].                           85   1e-16
Alignment   gi|NP_005092.1| ubiquitin-like protein ISG15 precursor [Homo sa...    77   2e-14

>ref|NP_061828.1| polyubiquitin-B precursor [Homo sapiens].
          Length = 229

 Score =  448 bits (1152), Expect = e-126
 Identities = 229/229 (100%), Positives = 229/229 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 794
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229



 Score =  298 bits (763), Expect = 5e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 563
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|NP_066289.2| polyubiquitin-C [Homo sapiens].
          Length = 685

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 221 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 281 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 340

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 341 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 400

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 401 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84   LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 297  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 356

Query: 264  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 357  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 416

Query: 444  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 417  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 476

Query: 624  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 477  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84   LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 373  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 264  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 433  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 492

Query: 444  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 493  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 552

Query: 624  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 553  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84   LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 449  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508

Query: 264  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 509  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 568

Query: 444  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 569  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 628

Query: 624  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 629  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684



 Score =  442 bits (1136), Expect = e-124
 Identities = 229/236 (97%), Positives = 230/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           P DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PSDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  442 bits (1136), Expect = e-124
 Identities = 229/236 (97%), Positives = 230/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP DQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLED 204

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 324

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 325 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380



 Score =  441 bits (1135), Expect = e-124
 Identities = 227/228 (99%), Positives = 227/228 (99%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           KIQDKEGIP DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  298 bits (764), Expect = 4e-81
 Identities = 154/161 (95%), Positives = 156/161 (96%)
 Frame = +3

Query: 84   LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 525  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 584

Query: 264  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 585  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 644

Query: 444  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 566
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 645  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 685


>ref|NP_003324.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens].
          Length = 128

 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGM 338
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGGM 566
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_001029102.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens].
          Length = 128

 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGM 338
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGGM 566
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_001170884.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGG 335
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGG 563
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_002945.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGG 335
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGG 563
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_001129064.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGG 335
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGG 563
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_006147.1| NEDD8 precursor [Homo sapiens].
          Length = 81

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 44/76 (57%), Positives = 59/76 (77%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 288 IQKESTLHLVLRLRGG 335
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76



 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 44/76 (57%), Positives = 59/76 (77%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 516 IQKESTLHLVLRLRGG 563
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76



 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 44/76 (57%), Positives = 59/76 (77%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 744 IQKESTLHLVLRLRGG 791
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76


>ref|NP_006389.2| ubiquitin D [Homo sapiens].
          Length = 165

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 6/166 (3%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           LC+H        V++     +T +  P D+++ +K  ++ K  +P   Q L+   K L+ 
Sbjct: 8   LCVH--------VRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKP 59

Query: 264 GRTLSDYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKI 425
            R+LS Y I KE T+HL L++       + +F+       K   L+V  S ++  VKA I
Sbjct: 60  RRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMI 119

Query: 426 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 563
           + K GI P+ Q +   GK+LEDG+ ++DY I+K + L L     GG
Sbjct: 120 ETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165



 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
 Frame = +3

Query: 342 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 521
           + V++     +T +  P D+++ +K  ++ K  +P   Q L+   K L+  R+LS Y I 
Sbjct: 10  VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69

Query: 522 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 683
           KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ 
Sbjct: 70  KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129

Query: 684 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           Q +   GK+LEDG+ ++DY I+K + L L     GG
Sbjct: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165


>ref|NP_005092.1| ubiquitin-like protein ISG15 precursor [Homo sapiens].
          Length = 165

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
 Frame = +3

Query: 333 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 506
           G  + VK L G    + +  S ++  +KA+I  K G+   QQRL    +G  L+D   L+
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 507 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 683
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 684 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157



 Score = 75.1 bits (183), Expect = 9e-14
 Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 3/151 (1%)
 Frame = +3

Query: 120 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQ 293
           VK L G    + +  S ++  +KA+I  K G+   QQRL    +G  L+D   L+   + 
Sbjct: 7   VKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLG 66

Query: 294 KESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 470
             ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F
Sbjct: 67  PGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126

Query: 471 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 563
            GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 127 EGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
 Frame = +3

Query: 57  DSV*LASQRLCLHSQV---------KMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 209
           D V LASQ L   S V          + I V+   G++ T EV  + T+ ++K ++   E
Sbjct: 56  DRVPLASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLE 115

Query: 210 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 335
           G+  D   L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 116 GVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,909,051
Number of extensions: 1186873
Number of successful extensions: 3686
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 3654
Number of HSP's successfully gapped: 73
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000710
         (993 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_062613.3| polyubiquitin-C [Mus musculus].                      445   e-125
Alignment   gi|NP_035794.1| polyubiquitin-B [Mus musculus].                      445   e-125
Alignment   gi|XP_985698.2| PREDICTED: ubiquitin-like protein ISG15-like [M...   151   7e-37
Alignment   gi|XP_003086791.1| PREDICTED: ubiquitin-like protein ISG15-like...   151   7e-37
Alignment   gi|NP_063936.1| ubiquitin-60S ribosomal protein L40 [Mus muscul...   151   7e-37
Alignment   gi|NP_001029037.1| ubiquitin-40S ribosomal protein S27a precurs...   151   9e-37
Alignment   gi|NP_077239.1| ubiquitin-40S ribosomal protein S27a precursor ...   151   9e-37
Alignment   gi|XP_003086579.1| PREDICTED: hypothetical protein LOC667035 [M...   149   3e-36
Alignment   gi|XP_001002242.1| PREDICTED: hypothetical protein LOC667035 [M...   148   6e-36
Alignment   gi|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus ...   108   6e-24

>ref|NP_062613.3| polyubiquitin-C [Mus musculus].
          Length = 734

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 324

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 325 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 221 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 281 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 340

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 341 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 400

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 401 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84   LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 297  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 356

Query: 264  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 357  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 416

Query: 444  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 417  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 476

Query: 624  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 477  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84   LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 373  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 264  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 433  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 492

Query: 444  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 493  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 552

Query: 624  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 553  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84   LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 449  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508

Query: 264  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 509  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 568

Query: 444  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 569  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 628

Query: 624  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 629  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684



 Score =  444 bits (1143), Expect = e-125
 Identities = 228/228 (100%), Positives = 228/228 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  338 bits (868), Expect = 3e-93
 Identities = 176/187 (94%), Positives = 179/187 (95%)
 Frame = +3

Query: 84   LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 525  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 584

Query: 264  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 585  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 644

Query: 444  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VEPS
Sbjct: 645  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPS 704

Query: 624  DTIENVK 644
             T + VK
Sbjct: 705  VTTKKVK 711


>ref|NP_035794.1| polyubiquitin-B [Mus musculus].
          Length = 305

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  444 bits (1143), Expect = e-125
 Identities = 228/228 (100%), Positives = 228/228 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_985698.2| PREDICTED: ubiquitin-like protein ISG15-like [Mus musculus].
          Length = 203

 Score =  151 bits (382), Expect = 7e-37
 Identities = 79/96 (82%), Positives = 85/96 (88%)
 Frame = +3

Query: 51  RGDSV*LASQRLCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ 230
           R D + L+ QR    +   +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQ
Sbjct: 59  RKDRLSLSLQRGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEGIPPDQQ 118

Query: 231 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 338
           RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 119 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (380), Expect = 1e-36
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +3

Query: 267 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 428
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 429 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 566
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (379), Expect = 1e-36
 Identities = 81/105 (77%), Positives = 89/105 (84%), Gaps = 6/105 (5%)
 Frame = +3

Query: 495 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 656
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 657 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 153


>ref|XP_003086791.1| PREDICTED: ubiquitin-like protein ISG15-like [Mus musculus].
          Length = 203

 Score =  151 bits (382), Expect = 7e-37
 Identities = 79/96 (82%), Positives = 85/96 (88%)
 Frame = +3

Query: 51  RGDSV*LASQRLCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ 230
           R D + L+ QR    +   +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQ
Sbjct: 59  RKDRLSLSLQRGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEGIPPDQQ 118

Query: 231 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 338
           RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 119 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (380), Expect = 1e-36
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +3

Query: 267 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 428
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 429 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 566
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (379), Expect = 1e-36
 Identities = 81/105 (77%), Positives = 89/105 (84%), Gaps = 6/105 (5%)
 Frame = +3

Query: 495 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 656
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 657 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 153


>ref|NP_063936.1| ubiquitin-60S ribosomal protein L40 [Mus musculus].
          Length = 128

 Score =  151 bits (382), Expect = 7e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGM 338
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 7e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGGM 566
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 9e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_001029037.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus].
          Length = 156

 Score =  151 bits (381), Expect = 9e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGG 335
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 9e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGG 563
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 9e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_077239.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus].
          Length = 156

 Score =  151 bits (381), Expect = 9e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGG 335
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 9e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGG 563
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 9e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|XP_003086579.1| PREDICTED: hypothetical protein LOC667035 [Mus musculus].
          Length = 155

 Score =  149 bits (376), Expect = 3e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLT 362
           IQKESTLHLVLRLRGG +   K+ T
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKSYT 85



 Score =  149 bits (376), Expect = 3e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGGMQIFVKTLT 590
           IQKESTLHLVLRLRGG +   K+ T
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKSYT 85



 Score =  148 bits (374), Expect = 6e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|XP_001002242.1| PREDICTED: hypothetical protein LOC667035 [Mus musculus].
          Length = 156

 Score =  148 bits (374), Expect = 6e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGG 335
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  148 bits (374), Expect = 6e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGG 563
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  148 bits (374), Expect = 6e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus musculus].
          Length = 239

 Score =  108 bits (270), Expect = 6e-24
 Identities = 56/81 (69%), Positives = 65/81 (80%)
 Frame = +3

Query: 96  SQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 275
           +   +QIF+KTLT  TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TL
Sbjct: 110 ADTNVQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTL 169

Query: 276 SDYNIQKESTLHLVLRLRGGM 338
           S+  IQ +STL+L L L  G+
Sbjct: 170 SNCYIQNQSTLYLELPLCDGI 190



 Score =  108 bits (269), Expect = 8e-24
 Identities = 56/77 (72%), Positives = 64/77 (83%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           +QIF+KTLT  TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TLS+  
Sbjct: 114 VQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTLSNCY 173

Query: 516 IQKESTLHLVLRLRGGM 566
           IQ +STL+L L L  G+
Sbjct: 174 IQNQSTLYLELPLCDGI 190



 Score =  107 bits (268), Expect = 1e-23
 Identities = 56/76 (73%), Positives = 63/76 (82%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           +QIF+KTLT  TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TLS+  
Sbjct: 114 VQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTLSNCY 173

Query: 744 IQKESTLHLVLRLRGG 791
           IQ +STL+L L L  G
Sbjct: 174 IQNQSTLYLELPLCDG 189


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,766,384
Number of extensions: 1001887
Number of successful extensions: 3230
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 3191
Number of HSP's successfully gapped: 101
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000710
         (993 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001098779.1| ubiquitin [Sus scrofa].                           448   e-126
Alignment   gi|XP_003359130.1| PREDICTED: polyubiquitin-B-like isoform 5 [S...   445   e-125
Alignment   gi|XP_003359129.1| PREDICTED: polyubiquitin-B-like isoform 4 [S...   445   e-125
Alignment   gi|XP_003359128.1| PREDICTED: polyubiquitin-B-like isoform 3 [S...   445   e-125
Alignment   gi|XP_003359127.1| PREDICTED: polyubiquitin-B-like isoform 2 [S...   445   e-125
Alignment   gi|XP_003132918.2| PREDICTED: polyubiquitin-B-like isoform 1 [S...   445   e-125
Alignment   gi|XP_003358349.1| PREDICTED: hypothetical protein LOC100627098...   406   e-113
Alignment   gi|NP_999376.1| ubiquitin-60S ribosomal protein L40 [Sus scrofa].    151   5e-37
Alignment   gi|XP_003125185.1| PREDICTED: ubiquitin-40S ribosomal protein S...   151   6e-37
Alignment   gi|XP_003125184.1| PREDICTED: ubiquitin-40S ribosomal protein S...   151   6e-37

>ref|NP_001098779.1| ubiquitin [Sus scrofa].
          Length = 229

 Score =  448 bits (1152), Expect = e-126
 Identities = 229/229 (100%), Positives = 229/229 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 794
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229



 Score =  298 bits (763), Expect = 3e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 563
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003359130.1| PREDICTED: polyubiquitin-B-like isoform 5 [Sus scrofa].
          Length = 305

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003359129.1| PREDICTED: polyubiquitin-B-like isoform 4 [Sus scrofa].
          Length = 305

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003359128.1| PREDICTED: polyubiquitin-B-like isoform 3 [Sus scrofa].
          Length = 305

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003359127.1| PREDICTED: polyubiquitin-B-like isoform 2 [Sus scrofa].
          Length = 305

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003132918.2| PREDICTED: polyubiquitin-B-like isoform 1 [Sus scrofa].
          Length = 305

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +3

Query: 84  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 263
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 264 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 443
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 444 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 623
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 624 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 467
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 468 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 647
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 648 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 791
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003358349.1| PREDICTED: hypothetical protein LOC100627098 [Sus scrofa].
          Length = 252

 Score =  406 bits (1043), Expect = e-113
 Identities = 214/252 (84%), Positives = 214/252 (84%)
 Frame = -2

Query: 854 MARVQSNAISGHYECKTGELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVG 675
           MARVQSNAISGHYECKTGELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLV 
Sbjct: 1   MARVQSNAISGHYECKTGELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVR 60

Query: 674 GNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSA 495
           GNA            GVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSA
Sbjct: 61  GNAFLILDLGLHILDGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSA 120

Query: 494 AIFQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQSDGLAGQGLHEDLHTTPQTQN 315
           AIFQLLACKDEPLLVGGNA            GVTGLHLQ DGLAGQGLHEDLHTTPQTQN
Sbjct: 121 AIFQLLACKDEPLLVGGNAFLILDLGLHILDGVTGLHLQGDGLAGQGLHEDLHTTPQTQN 180

Query: 314 QMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLA 135
           QMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNA            GVTGLHLQGDGLA
Sbjct: 181 QMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNALLILDLGLHILDGVTGLHLQGDGLA 240

Query: 134 GQGLHEDLHFDL 99
           GQGLHEDLHFDL
Sbjct: 241 GQGLHEDLHFDL 252


>ref|NP_999376.1| ubiquitin-60S ribosomal protein L40 [Sus scrofa].
          Length = 128

 Score =  151 bits (382), Expect = 5e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGGM 338
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 5e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGGM 566
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 6e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|XP_003125185.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa].
          Length = 156

 Score =  151 bits (381), Expect = 6e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGG 335
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 6e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGG 563
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 6e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|XP_003125184.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa].
          Length = 156

 Score =  151 bits (381), Expect = 6e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 108 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 287
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 288 IQKESTLHLVLRLRGG 335
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 6e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 336 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 515
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 516 IQKESTLHLVLRLRGG 563
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 6e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 564 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 743
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 744 IQKESTLHLVLRLRGG 791
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,637,549
Number of extensions: 858153
Number of successful extensions: 2565
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 2510
Number of HSP's successfully gapped: 70
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000710
         (993 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                        1596   0.0  
Sscrofa_Chr14                                                         696   0.0  
Sscrofa_Chr10                                                         484   e-134
Sscrofa_Chr08                                                         190   1e-45
Sscrofa_Chr15                                                         182   2e-43
Sscrofa_Chr02                                                         127   1e-26
Sscrofa_Chr01                                                          92   7e-16
gb|GL894030.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...    76   4e-11
Sscrofa_Chr03                                                          60   2e-06

>Sscrofa_Chr12 
||          Length = 63588571

 Score = 1596 bits (805), Expect = 0.0
 Identities = 823/829 (99%)
 Strand = Plus / Minus

                                                                            
Query: 100      aggtcaaaatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtgg 159
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298822 aggtcaaaatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtgg 62298763

                                                                            
Query: 160      agcccagtgacaccatcgagaatgtgaaggccaagatccaggataaggagggcattcccc 219
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298762 agcccagtgacaccatcgagaatgtgaaggccaagatccaggataaggagggcattcccc 62298703

                                                                            
Query: 220      ccgaccagcagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctg 279
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298702 ccgaccagcagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctg 62298643

                                                                            
Query: 280      attacaacatccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgc 339
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298642 attacaacatccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgc 62298583

                                                                            
Query: 340      agatcttcgtgaagaccttgaccggcaagaccatcactctggaggtggagcccagtgaca 399
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 62298582 agatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgaca 62298523

                                                                            
Query: 400      ccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccagcaga 459
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 62298522 ccatcgagaatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcaga 62298463

                                                                            
Query: 460      ggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaacatcc 519
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298462 ggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaacatcc 62298403

                                                                            
Query: 520      agaaagagtccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtga 579
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298402 agaaagagtccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtga 62298343

                                                                            
Query: 580      agaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatg 639
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298342 agaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatg 62298283

                                                                            
Query: 640      tgaaggccaagatccaggataaggagggcattccccccgaccagcagaggctcatctttg 699
                ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 62298282 tgaaggccaagatccaggataaggaaggcattccccctgaccagcagaggctcatctttg 62298223

                                                                            
Query: 700      caggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagagtcca 759
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298222 caggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagagtcca 62298163

                                                                            
Query: 760      ctctccatctggtcctccgtctgaggggtggctgctaattctccagtcttgcattcataa 819
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298162 ctctccatctggtcctccgtctgaggggtggctgctaattctccagtcttgcattcataa 62298103

                                                                            
Query: 820      tgcccactgatggcattactctgcactctagccatttgcccccattttagtttagaaatt 879
                |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 62298102 tgcccactgatggcattactctgcactctagccatttgccccaatttaagtttagaaatt 62298043

                                                                 
Query: 880      accagtttcagtaatagctgaacctgtccaaaatgttaataaaggtttt 928
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298042 accagtttcagtaatagctgaacctgtccaaaatgttaataaaggtttt 62297994



 Score =  182 bits (92), Expect = 2e-43
 Identities = 95/96 (98%)
 Strand = Plus / Minus

                                                                            
Query: 8        gttcagaagcgactggcattgttggcagtttcgctgttgcggtcgaggtgattcggtgtg 67
                |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 62299575 gttcagaagcgactggcattgttggcggtttcgctgttgcggtcgaggtgattcggtgtg 62299516

                                                    
Query: 68       attggcttcacagcgtctgtgccttcactcacaggt 103
                ||||||||||||||||||||||||||||||||||||
Sbjct: 62299515 attggcttcacagcgtctgtgccttcactcacaggt 62299480


>Sscrofa_Chr14 
||          Length = 153851969

 Score =  696 bits (351), Expect = 0.0
 Identities = 591/671 (88%)
 Strand = Plus / Plus

                                                                            
Query: 108      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 167
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29960091 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960150

                                                                            
Query: 168      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 227
                |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 29960151 gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 29960210

                                                                            
Query: 228      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 287
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29960211 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960270

                                                                            
Query: 288      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 347
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 29960271 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29960330

                                                                            
Query: 348      gtgaagaccttgaccggcaagaccatcactctggaggtggagcccagtgacaccatcgag 407
                |||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 29960331 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29960390

                                                                            
Query: 408      aatgtgaaggccaagatccaggataaggagggcattccccccgaccagcagaggctcatc 467
                || || ||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct: 29960391 aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 29960450

                                                                            
Query: 468      tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 527
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 29960451 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29960510

                                                                            
Query: 528      tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 587
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 29960511 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29960570

                                                                            
Query: 588      accggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 647
                || || ||||||||||||||||| ||||||||||| |||||||||||||| || ||||| 
Sbjct: 29960571 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 29960630

                                                                            
Query: 648      aagatccaggataaggagggcattccccccgaccagcagaggctcatctttgcaggcaag 707
                ||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||| || |||
Sbjct: 29960631 aagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29960690

                                                                            
Query: 708      cagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctccat 767
                |||||||||||||| ||||| || ||||| |||||||||||||| |||||||| || || 
Sbjct: 29960691 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 29960750

                           
Query: 768      ctggtcctccg 778
                |||||||||||
Sbjct: 29960751 ctggtcctccg 29960761



 Score =  688 bits (347), Expect = 0.0
 Identities = 590/671 (87%)
 Strand = Plus / Plus

                                                                            
Query: 108      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 167
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29960319 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960378

                                                                            
Query: 168      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 227
                |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 29960379 gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 29960438

                                                                            
Query: 228      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 287
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29960439 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960498

                                                                            
Query: 288      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 347
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 29960499 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29960558

                                                                            
Query: 348      gtgaagaccttgaccggcaagaccatcactctggaggtggagcccagtgacaccatcgag 407
                |||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 29960559 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29960618

                                                                            
Query: 408      aatgtgaaggccaagatccaggataaggagggcattccccccgaccagcagaggctcatc 467
                || || ||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct: 29960619 aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 29960678

                                                                            
Query: 468      tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 527
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 29960679 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29960738

                                                                            
Query: 528      tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 587
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 29960739 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29960798

                                                                            
Query: 588      accggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 647
                || || ||||||||||||||||| ||||||||||| |||||||||||||| || ||||| 
Sbjct: 29960799 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 29960858

                                                                            
Query: 648      aagatccaggataaggagggcattccccccgaccagcagaggctcatctttgcaggcaag 707
                |||||||| || ||||| ||||| ||||| |||||||||||||| |||||||| || |||
Sbjct: 29960859 aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29960918

                                                                            
Query: 708      cagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctccat 767
                |||||||||||||| ||||| || ||||| |||||||||||||| |||||||| || || 
Sbjct: 29960919 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 29960978

                           
Query: 768      ctggtcctccg 778
                |||||||||||
Sbjct: 29960979 ctggtcctccg 29960989



 Score =  688 bits (347), Expect = 0.0
 Identities = 590/671 (87%)
 Strand = Plus / Plus

                                                                            
Query: 108      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 167
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29960547 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960606

                                                                            
Query: 168      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 227
                |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 29960607 gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 29960666

                                                                            
Query: 228      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 287
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29960667 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960726

                                                                            
Query: 288      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 347
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 29960727 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29960786

                                                                            
Query: 348      gtgaagaccttgaccggcaagaccatcactctggaggtggagcccagtgacaccatcgag 407
                |||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 29960787 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29960846

                                                                            
Query: 408      aatgtgaaggccaagatccaggataaggagggcattccccccgaccagcagaggctcatc 467
                || || ||||| |||||||| || ||||| ||||| ||||| |||||||||||||| |||
Sbjct: 29960847 aacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatc 29960906

                                                                            
Query: 468      tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 527
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 29960907 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29960966

                                                                            
Query: 528      tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 587
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 29960967 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29961026

                                                                            
Query: 588      accggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 647
                || || ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| 
Sbjct: 29961027 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcg 29961086

                                                                            
Query: 648      aagatccaggataaggagggcattccccccgaccagcagaggctcatctttgcaggcaag 707
                |||||||| || ||||| ||||| ||||| |||||||||||||| |||||||| || |||
Sbjct: 29961087 aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29961146

                                                                            
Query: 708      cagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctccat 767
                |||||||||||||| ||||| || ||||| |||||||||||||| |||||||| || || 
Sbjct: 29961147 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 29961206

                           
Query: 768      ctggtcctccg 778
                |||||||||||
Sbjct: 29961207 ctggtcctccg 29961217



 Score =  676 bits (341), Expect = 0.0
 Identities = 575/653 (88%)
 Strand = Plus / Plus

                                                                            
Query: 108      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 167
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29960775 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960834

                                                                            
Query: 168      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 227
                |||||||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||||
Sbjct: 29960835 gacaccatcgagaacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccag 29960894

                                                                            
Query: 228      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 287
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29960895 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960954

                                                                            
Query: 288      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 347
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 29960955 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29961014

                                                                            
Query: 348      gtgaagaccttgaccggcaagaccatcactctggaggtggagcccagtgacaccatcgag 407
                |||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 29961015 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29961074

                                                                            
Query: 408      aatgtgaaggccaagatccaggataaggagggcattccccccgaccagcagaggctcatc 467
                ||||| ||||| |||||||| || ||||| ||||| ||||| |||||||||||||| |||
Sbjct: 29961075 aatgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatc 29961134

                                                                            
Query: 468      tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 527
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 29961135 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29961194

                                                                            
Query: 528      tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 587
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 29961195 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29961254

                                                                            
Query: 588      accggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 647
                || || ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| 
Sbjct: 29961255 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcg 29961314

                                                                            
Query: 648      aagatccaggataaggagggcattccccccgaccagcagaggctcatctttgcaggcaag 707
                |||||||| || ||||| ||||| ||||| |||||||||||||| |||||||| || |||
Sbjct: 29961315 aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29961374

                                                                     
Query: 708      cagctggaagatggccgcactctttctgattacaacatccagaaagagtccac 760
                |||||||||||||| ||||| || ||||| |||||||||||||| ||||||||
Sbjct: 29961375 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccac 29961427



 Score =  666 bits (336), Expect = 0.0
 Identities = 588/672 (87%)
 Strand = Plus / Plus

                                                                            
Query: 107      aatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccag 166
                |||||||||||| || |||||| |||| || ||||||||||||||||| |||||||||||
Sbjct: 29959862 aatgcagatctttgtaaagaccttgactggtaagaccatcaccctggaagtggagcccag 29959921

                                                                            
Query: 167      tgacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgacca 226
                ||||||||| |||||||| ||||  ||||| || || || |||||||| ||||| |||||
Sbjct: 29959922 tgacaccattgagaatgtcaaggggaagattcaagaaaaagagggcatccccccagacca 29959981

                                                                            
Query: 227      gcagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaa 286
                ||||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| |||||
Sbjct: 29959982 gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 29960041

                                                                            
Query: 287      catccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatctt 346
                ||||||||| ||||||||||| || ||||| || || || || ||||| |||||||||||
Sbjct: 29960042 catccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatctt 29960101

                                                                            
Query: 347      cgtgaagaccttgaccggcaagaccatcactctggaggtggagcccagtgacaccatcga 406
                ||||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||
Sbjct: 29960102 cgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcga 29960161

                                                                            
Query: 407      gaatgtgaaggccaagatccaggataaggagggcattccccccgaccagcagaggctcat 466
                ||| || ||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| ||
Sbjct: 29960162 gaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgat 29960221

                                                                            
Query: 467      ctttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaaga 526
                |||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| ||
Sbjct: 29960222 ctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaagga 29960281

                                                                            
Query: 527      gtccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagacctt 586
                |||||| || || ||||| || || || || ||||| |||||||||||||||||||||||
Sbjct: 29960282 gtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagacctt 29960341

                                                                            
Query: 587      gaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggc 646
                ||| || ||||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 29960342 gactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggc 29960401

                                                                            
Query: 647      caagatccaggataaggagggcattccccccgaccagcagaggctcatctttgcaggcaa 706
                 ||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||| || ||
Sbjct: 29960402 gaagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaa 29960461

                                                                            
Query: 707      gcagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctcca 766
                ||||||||||||||| ||||| || ||||| |||||||||||||| |||||||| || ||
Sbjct: 29960462 gcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgca 29960521

                            
Query: 767      tctggtcctccg 778
                 |||||||||||
Sbjct: 29960522 cctggtcctccg 29960533



 Score =  230 bits (116), Expect = 1e-57
 Identities = 179/200 (89%)
 Strand = Plus / Plus

                                                                            
Query: 108      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 167
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29961231 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29961290

                                                                            
Query: 168      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 227
                ||||||||||||||||| ||||| |||||||| || ||||| ||||| ||||| ||||||
Sbjct: 29961291 gacaccatcgagaatgtcaaggcgaagatccaagacaaggaaggcatccccccagaccag 29961350

                                                                            
Query: 228      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 287
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29961351 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29961410

                                    
Query: 288      atccagaaagagtccaccct 307
                |||||||| |||||||||||
Sbjct: 29961411 atccagaaggagtccaccct 29961430



 Score = 95.6 bits (48), Expect = 4e-17
 Identities = 163/200 (81%), Gaps = 1/200 (0%)
 Strand = Plus / Minus

                                                                            
Query: 108      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 167
                ||||||||||| ||||||||||| || ||||||||||||||| | |||||  ||||||| 
Sbjct: 42239731 atgcagatctttgtgaagaccctaacaggcaagaccatcacctttgaggtcaagcccagc 42239672

                                                                            
Query: 168      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 227
                 | ||||  |||||||| || || || |||||||| ||||||||||| |  || ||||||
Sbjct: 42239671 aatacca-agagaatgtcaaagctaaaatccaggacaaggagggcatcctgcctgaccag 42239613

                                                                            
Query: 228      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 287
                ||| | || || ||||   |||| ||||||||||||||||  || || || || ||| | 
Sbjct: 42239612 cagtgtctgatttttgtcagcaaacagctggaggatggccatacactctcagactacgat 42239553

                                    
Query: 288      atccagaaagagtccaccct 307
                ||||||||||||||||||||
Sbjct: 42239552 atccagaaagagtccaccct 42239533



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 158/197 (80%), Gaps = 1/197 (0%)
 Strand = Plus / Minus

                                                                            
Query: 564      atgcagatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 623
                ||||||||||| ||||||||| | || ||||||||||||||| | |||||  ||||||| 
Sbjct: 42239731 atgcagatctttgtgaagaccctaacaggcaagaccatcacctttgaggtcaagcccagc 42239672

                                                                            
Query: 624      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 683
                 | ||||  |||||||| || || || |||||||| ||||||||||| |  || ||||||
Sbjct: 42239671 aatacca-agagaatgtcaaagctaaaatccaggacaaggagggcatcctgcctgaccag 42239613

                                                                            
Query: 684      cagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaac 743
                ||| | || || ||||   |||| |||||||| |||||||  || || || || ||| | 
Sbjct: 42239612 cagtgtctgatttttgtcagcaaacagctggaggatggccatacactctcagactacgat 42239553

                                 
Query: 744      atccagaaagagtccac 760
                |||||||||||||||||
Sbjct: 42239552 atccagaaagagtccac 42239536


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  484 bits (244), Expect = e-134
 Identities = 334/366 (91%), Gaps = 16/366 (4%)
 Strand = Plus / Minus

                                                                            
Query: 564      atgcagatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 623
                ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29934422 atgcagatctttgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 29934363

                                                                            
Query: 624      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcatt-ccccccgacca 682
                ||||||| |||||               ||||||||||||| |||||| |||||||||| 
Sbjct: 29934362 gacaccaccgaga---------------tccaggataaggaaggcattgccccccgaccg 29934318

                                                                            
Query: 683      gcagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaa 742
                |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 29934317 gcagaggctcatctttgcaggcaagccgctggaggatggccgcactctttctgattacaa 29934258

                                                                            
Query: 743      catccagaaagagtccactctccatctggtcctccgtctgaggggtggctgctaattctc 802
                |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || 
Sbjct: 29934257 catccagaaagagtccaccctccatctggtcctccgtctgaggggtggctgctaatcctt 29934198

                                                                            
Query: 803      cagtcttgcattcataatgcccactgatggcattactctgcactctagccatttgccccc 862
                |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| 
Sbjct: 29934197 cagtcttgcattcataatgcctgatgatggcattactctgcactctagccatttgcccca 29934138

                                                                            
Query: 863      attttagtttagaaattaccagtttcagtaatagctgaacctgtccaaaatgttaataaa 922
                |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 29934137 atttaagtttagaaattaccagtttcagtaatagctgaacctgtccaaaatgtaaagaaa 29934078

                      
Query: 923      ggtttt 928
                ||||||
Sbjct: 29934077 ggtttt 29934072



 Score =  331 bits (167), Expect = 4e-88
 Identities = 245/273 (89%), Gaps = 16/273 (5%)
 Strand = Plus / Minus

                                                                            
Query: 63       gtgtgattggcttcacagcgtctgtgccttcactcacaggtcaaaatgcagatcttcgtg 122
                |||||||||| |||||||| ||||||||||  |||||||||||||||||||||||| |||
Sbjct: 29934467 gtgtgattggattcacagcatctgtgcctttgctcacaggtcaaaatgcagatctttgtg 29934408

                                                                            
Query: 123      aagaccctgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaat 182
                |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||  
Sbjct: 29934407 aagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccaccgaga-- 29934350

                                                                            
Query: 183      gtgaaggccaagatccaggataaggagggcatt-ccccccgaccagcagaggctcatctt 241
                             ||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct: 29934349 -------------tccaggataaggaaggcattgccccccgaccggcagaggctcatctt 29934303

                                                                            
Query: 242      tgcaggcaagcagctggaggatggccgcactctttctgattacaacatccagaaagagtc 301
                ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29934302 tgcaggcaagccgctggaggatggccgcactctttctgattacaacatccagaaagagtc 29934243

                                                 
Query: 302      caccctccatctggttctgcgtctgaggggtgg 334
                ||||||||||||||| || ||||||||||||||
Sbjct: 29934242 caccctccatctggtcctccgtctgaggggtgg 29934210



 Score =  258 bits (130), Expect = 5e-66
 Identities = 202/228 (88%), Gaps = 16/228 (7%)
 Strand = Plus / Minus

                                                                            
Query: 336      atgcagatcttcgtgaagaccttgaccggcaagaccatcactctggaggtggagcccagt 395
                ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 29934422 atgcagatctttgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 29934363

                                                                            
Query: 396      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcatt-ccccccgacca 454
                ||||||| |||||               ||||||||||||| |||||| |||||||||| 
Sbjct: 29934362 gacaccaccgaga---------------tccaggataaggaaggcattgccccccgaccg 29934318

                                                                            
Query: 455      gcagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaa 514
                |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 29934317 gcagaggctcatctttgcaggcaagccgctggaggatggccgcactctttctgattacaa 29934258

                                                                
Query: 515      catccagaaagagtccactctccatctggttctgcgtctgaggggtgg 562
                |||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 29934257 catccagaaagagtccaccctccatctggtcctccgtctgaggggtgg 29934210


>Sscrofa_Chr08 
||          Length = 148491826

 Score =  190 bits (96), Expect = 1e-45
 Identities = 261/315 (82%), Gaps = 2/315 (0%)
 Strand = Plus / Plus

                                                                            
Query: 592      gcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggccaaga 651
                |||||||| ||  |||||||||||||||||||||| ||   |||||   ||||||| |||
Sbjct: 11763273 gcaagaccgtcctcctggaggtggagcccagtgaccccgctgagaacccgaaggcccaga 11763332

                                                                            
Query: 652      tccaggataaggagggcattccccccgaccagcagaggctcatctttgcaggcaagcagc 711
                ||||||||||||| |||||  |||| | ||||||||||||| ||||||||||| | ||||
Sbjct: 11763333 tccaggataaggaaggcatctcccctggccagcagaggctcgtctttgcaggccaacagc 11763392

                                                                            
Query: 712      tggaagatggccgcactctttctgattacaacatccagaaagagtccactctccatctgg 771
                  ||||||||||  |||||  |||||| || ||| ||||||||||| || || ||  |||
Sbjct: 11763393 cagaagatggccagactct--ctgattgcagcattcagaaagagtcgacgctgcacgtgg 11763450

                                                                            
Query: 772      tcctccgtctgaggggtggctgctaattctccagtcttgcattcataatgcccactgatg 831
                |||||||||| ||||| ||||| ||||||| ||| | ||| | ||| ||| |||||| ||
Sbjct: 11763451 tcctccgtctaaggggcggctgttaattcttcagccctgcttgcatcatggccactggtg 11763510

                                                                            
Query: 832      gcattactctgcactctagccatttgcccccattttagtttagaaattaccagtttcagt 891
                | ||  |||||  ||||||||||||| ||| |||| |||||| |||||||||||||||||
Sbjct: 11763511 gtatccctctgtgctctagccatttggcccaatttaagtttaaaaattaccagtttcagt 11763570

                               
Query: 892      aatagctgaacctgt 906
                | |||||||||||||
Sbjct: 11763571 actagctgaacctgt 11763585



 Score =  101 bits (51), Expect = 7e-19
 Identities = 150/182 (82%), Gaps = 2/182 (1%)
 Strand = Plus / Plus

                                                                            
Query: 120      gtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 179
                |||||||| |||| | |||||||| ||  |||||||||||||||||||||| ||   |||
Sbjct: 11763257 gtgaagactctgatcagcaagaccgtcctcctggaggtggagcccagtgaccccgctgag 11763316

                                                                            
Query: 180      aatgtgaaggccaagatccaggataaggagggcattccccccgaccagcagaggctcatc 239
                ||   ||||||| |||||||||||||||| |||||  |||| | ||||||||||||| ||
Sbjct: 11763317 aacccgaaggcccagatccaggataaggaaggcatctcccctggccagcagaggctcgtc 11763376

                                                                            
Query: 240      tttgcaggcaagcagctggaggatggccgcactctttctgattacaacatccagaaagag 299
                ||||||||| | ||||  || |||||||  ||||  ||||||| || ||| |||||||||
Sbjct: 11763377 tttgcaggccaacagccagaagatggccagactc--tctgattgcagcattcagaaagag 11763434

                  
Query: 300      tc 301
                ||
Sbjct: 11763435 tc 11763436



 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 127/152 (83%), Gaps = 2/152 (1%)
 Strand = Plus / Plus

                                                                            
Query: 378      ctggaggtggagcccagtgacaccatcgagaatgtgaaggccaagatccaggataaggag 437
                ||||||||||||||||||||| ||   |||||   ||||||| |||||||||||||||| 
Sbjct: 11763287 ctggaggtggagcccagtgaccccgctgagaacccgaaggcccagatccaggataaggaa 11763346

                                                                            
Query: 438      ggcattccccccgaccagcagaggctcatctttgcaggcaagcagctggaagatggccgc 497
                |||||  |||| | ||||||||||||| ||||||||||| | ||||  ||||||||||  
Sbjct: 11763347 ggcatctcccctggccagcagaggctcgtctttgcaggccaacagccagaagatggccag 11763406

                                                
Query: 498      actctttctgattacaacatccagaaagagtc 529
                ||||  ||||||| || ||| |||||||||||
Sbjct: 11763407 actc--tctgattgcagcattcagaaagagtc 11763436



 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 160/199 (80%), Gaps = 2/199 (1%)
 Strand = Plus / Minus

                                                                           
Query: 109     tgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagtg 168
               ||||| |||| |||||||||| | | ||  ||||| ||||||||||||||||||| ||||
Sbjct: 3018032 tgcaggtcttggtgaagaccccgccaggtgagaccctcaccctggaggtggagcctagtg 3017973

                                                                           
Query: 169     acaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccagc 228
               |  |||  |||||||  |  || || ||||||| |||||||||||| || || |||||||
Sbjct: 3017972 atgccactgagaatgccagagctaaaatccaggctaaggagggcatcccgcctgaccagc 3017913

                                                                           
Query: 229     agaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaaca 288
               || | || |  ||||| ||||| ||||||||||||||| | || || || ||  ||| | 
Sbjct: 3017912 agcgtctga-atttgccggcaaacagctggaggatggctg-acgctctcagaccacaccg 3017855

                                  
Query: 289     tccagaaagagtccaccct 307
               |||||||||||||||||||
Sbjct: 3017854 tccagaaagagtccaccct 3017836


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  182 bits (92), Expect = 2e-43
 Identities = 130/140 (92%), Gaps = 2/140 (1%)
 Strand = Plus / Plus

                                                                            
Query: 579      aagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaat 638
                |||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 70557861 aagaccttaaccagcaagaccatcaccctggaggtggagcccagtgacaccat-gagaat 70557919

                                                                            
Query: 639      gtgaaggccaagatccaggataaggagggcattccccccgaccagcagaggctcatcttt 698
                |||||||||||||||||||||||||| |||| |||  | ||||||||| |||||||||||
Sbjct: 70557920 gtgaaggccaagatccaggataaggaaggca-tccagctgaccagcagcggctcatcttt 70557978

                                    
Query: 699      gcaggcaagcagctggaaga 718
                |||||||| |||||||||||
Sbjct: 70557979 gcaggcaaacagctggaaga 70557998



 Score =  174 bits (88), Expect = 6e-41
 Identities = 129/140 (92%), Gaps = 2/140 (1%)
 Strand = Plus / Plus

                                                                            
Query: 351      aagaccttgaccggcaagaccatcactctggaggtggagcccagtgacaccatcgagaat 410
                |||||||| ||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 70557861 aagaccttaaccagcaagaccatcaccctggaggtggagcccagtgacaccat-gagaat 70557919

                                                                            
Query: 411      gtgaaggccaagatccaggataaggagggcattccccccgaccagcagaggctcatcttt 470
                |||||||||||||||||||||||||| |||| |||  | ||||||||| |||||||||||
Sbjct: 70557920 gtgaaggccaagatccaggataaggaaggca-tccagctgaccagcagcggctcatcttt 70557978

                                    
Query: 471      gcaggcaagcagctggaaga 490
                |||||||| |||||||||||
Sbjct: 70557979 gcaggcaaacagctggaaga 70557998



 Score =  170 bits (86), Expect = 9e-40
 Identities = 139/154 (90%), Gaps = 2/154 (1%)
 Strand = Plus / Plus

                                                                            
Query: 106      aaatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagccca 165
                ||||||| ||||||   |||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 70557844 aaatgcaaatcttcaccaagaccttaaccagcaagaccatcaccctggaggtggagccca 70557903

                                                                            
Query: 166      gtgacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgacc 225
                |||||||||| |||||||||||||||||||||||||||||||| |||| |||  | ||||
Sbjct: 70557904 gtgacaccat-gagaatgtgaaggccaagatccaggataaggaaggca-tccagctgacc 70557961

                                                  
Query: 226      agcagaggctcatctttgcaggcaagcagctgga 259
                ||||| ||||||||||||||||||| ||||||||
Sbjct: 70557962 agcagcggctcatctttgcaggcaaacagctgga 70557995


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  127 bits (64), Expect = 1e-26
 Identities = 94/104 (90%)
 Strand = Plus / Plus

                                                                            
Query: 108      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 167
                ||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 59062540 atgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccagt 59062599

                                                            
Query: 168      gacaccatcgagaatgtgaaggccaagatccaggataaggaggg 211
                || ||||| |||||||| || || || |||||||||||||||||
Sbjct: 59062600 gataccattgagaatgtcaaagctaaaatccaggataaggaggg 59062643



 Score =  119 bits (60), Expect = 3e-24
 Identities = 93/104 (89%)
 Strand = Plus / Plus

                                                                            
Query: 564      atgcagatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 623
                ||||||||||| ||||||||| |||| ||||||||||||||||| ||||| |||||||||
Sbjct: 59062540 atgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccagt 59062599

                                                            
Query: 624      gacaccatcgagaatgtgaaggccaagatccaggataaggaggg 667
                || ||||| |||||||| || || || |||||||||||||||||
Sbjct: 59062600 gataccattgagaatgtcaaagctaaaatccaggataaggaggg 59062643



 Score =  111 bits (56), Expect = 7e-22
 Identities = 92/104 (88%)
 Strand = Plus / Plus

                                                                            
Query: 336      atgcagatcttcgtgaagaccttgaccggcaagaccatcactctggaggtggagcccagt 395
                ||||||||||| ||||||||| |||| |||||||||||||| || ||||| |||||||||
Sbjct: 59062540 atgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccagt 59062599

                                                            
Query: 396      gacaccatcgagaatgtgaaggccaagatccaggataaggaggg 439
                || ||||| |||||||| || || || |||||||||||||||||
Sbjct: 59062600 gataccattgagaatgtcaaagctaaaatccaggataaggaggg 59062643



 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                            
Query: 222      gaccagcagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgat 281
                ||||||||| | || || ||||| ||||| ||||||||||||||||||||||| || || 
Sbjct: 59062903 gaccagcagcgtctgatttttgctggcaaacagctggaggatggccgcactctctcagac 59062962

                                
Query: 282      tacaacatccagaaag 297
                ||||| ||||||||||
Sbjct: 59062963 tacaatatccagaaag 59062978



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                            
Query: 450      gaccagcagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgat 509
                ||||||||| | || || ||||| ||||| |||||||| |||||||||||||| || || 
Sbjct: 59062903 gaccagcagcgtctgatttttgctggcaaacagctggaggatggccgcactctctcagac 59062962

                                
Query: 510      tacaacatccagaaag 525
                ||||| ||||||||||
Sbjct: 59062963 tacaatatccagaaag 59062978



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                            
Query: 678      gaccagcagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgat 737
                ||||||||| | || || ||||| ||||| |||||||| |||||||||||||| || || 
Sbjct: 59062903 gaccagcagcgtctgatttttgctggcaaacagctggaggatggccgcactctctcagac 59062962

                                
Query: 738      tacaacatccagaaag 753
                ||||| ||||||||||
Sbjct: 59062963 tacaatatccagaaag 59062978


>Sscrofa_Chr01 
||          Length = 315321322

 Score = 91.7 bits (46), Expect = 7e-16
 Identities = 103/122 (84%)
 Strand = Plus / Plus

                                                                             
Query: 420       aagatccaggataaggagggcattccccccgaccagcagaggctcatctttgcaggcaag 479
                 ||||||||||||||||| || ||||| || |||||||| || || |||| ||| ||||||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                             
Query: 480       cagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctccat 539
                 || ||||||||||| || ||| | ||||| |||||||| || || ||||||||||| |||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccactcttcat 286958046

                   
Query: 540       ct 541
                 ||
Sbjct: 286958047 ct 286958048



 Score = 91.7 bits (46), Expect = 7e-16
 Identities = 103/122 (84%)
 Strand = Plus / Plus

                                                                             
Query: 648       aagatccaggataaggagggcattccccccgaccagcagaggctcatctttgcaggcaag 707
                 ||||||||||||||||| || ||||| || |||||||| || || |||| ||| ||||||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                             
Query: 708       cagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctccat 767
                 || ||||||||||| || ||| | ||||| |||||||| || || ||||||||||| |||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccactcttcat 286958046

                   
Query: 768       ct 769
                 ||
Sbjct: 286958047 ct 286958048



 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 101/122 (82%)
 Strand = Plus / Plus

                                                                             
Query: 192       aagatccaggataaggagggcattccccccgaccagcagaggctcatctttgcaggcaag 251
                 ||||||||||||||||| || ||||| || |||||||| || || |||| ||| ||||||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                             
Query: 252       cagctggaggatggccgcactctttctgattacaacatccagaaagagtccaccctccat 311
                 || ||||| ||||| || ||| | ||||| |||||||| || || |||||||| || |||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccactcttcat 286958046

                   
Query: 312       ct 313
                 ||
Sbjct: 286958047 ct 286958048


>gb|GL894030.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2736
          Length = 39926

 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 119/146 (81%)
 Strand = Plus / Plus

                                                                         
Query: 348   gtgaagaccttgaccggcaagaccatcactctggaggtggagcccagtgacaccatcgag 407
             ||||||||| |||| ||||||||||||||||| ||||| || |||   || ||  | || 
Sbjct: 37240 gtgaagaccctgacaggcaagaccatcactctcgaggttgaaccctcagatacattagaa 37299

                                                                         
Query: 408   aatgtgaaggccaagatccaggataaggagggcattccccccgaccagcagaggctcatc 467
             ||||| ||||| |||||||||||||||   || ||||| || |||||||| || || | |
Sbjct: 37300 aatgtaaaggctaagatccaggataagataggaattccgcctgaccagcaaagactgacc 37359

                                       
Query: 468   tttgcaggcaagcagctggaagatgg 493
             ||||| |||||||| |||||||||||
Sbjct: 37360 tttgctggcaagcaactggaagatgg 37385



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 118/146 (80%)
 Strand = Plus / Plus

                                                                         
Query: 576   gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 635
             ||||||||| |||| |||||||||||||| || ||||| || |||   || ||  | || 
Sbjct: 37240 gtgaagaccctgacaggcaagaccatcactctcgaggttgaaccctcagatacattagaa 37299

                                                                         
Query: 636   aatgtgaaggccaagatccaggataaggagggcattccccccgaccagcagaggctcatc 695
             ||||| ||||| |||||||||||||||   || ||||| || |||||||| || || | |
Sbjct: 37300 aatgtaaaggctaagatccaggataagataggaattccgcctgaccagcaaagactgacc 37359

                                       
Query: 696   tttgcaggcaagcagctggaagatgg 721
             ||||| |||||||| |||||||||||
Sbjct: 37360 tttgctggcaagcaactggaagatgg 37385


>Sscrofa_Chr03 
||          Length = 144787322

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 336      atgcagatcttcgtgaagaccttgaccggcaagaccatcactctggaggt 385
                |||||||| |||||||||||  |||| ||||||||||||||||| |||||
Sbjct: 90776264 atgcagatattcgtgaagacgctgacgggcaagaccatcactctcgaggt 90776215



 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 108      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggt 157
                |||||||| ||||||||||| ||||| |||||||||||||| || |||||
Sbjct: 90776264 atgcagatattcgtgaagacgctgacgggcaagaccatcactctcgaggt 90776215



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                            
Query: 669      attccccccgaccagcagaggctcatctttgcaggcaagcagctggaagatggccgcact 728
                ||||| || |||||||| || || |||||||| |||||||| ||||||||||| || |||
Sbjct: 90775271 attcctcctgaccagcaaagactgatctttgctggcaagcaactggaagatggacgtact 90775212

                                 
Query: 729      ctttctgattacaacat 745
                 | ||||| ||||||||
Sbjct: 90775211 ttgtctgactacaacat 90775195



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                            
Query: 441      attccccccgaccagcagaggctcatctttgcaggcaagcagctggaagatggccgcact 500
                ||||| || |||||||| || || |||||||| |||||||| ||||||||||| || |||
Sbjct: 90775271 attcctcctgaccagcaaagactgatctttgctggcaagcaactggaagatggacgtact 90775212

                                 
Query: 501      ctttctgattacaacat 517
                 | ||||| ||||||||
Sbjct: 90775211 ttgtctgactacaacat 90775195


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,868,667
Number of extensions: 242
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 38
Length of query: 993
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 972
Effective length of database: 2,808,413,156
Effective search space: 2729777587632
Effective search space used: 2729777587632
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)