Animal-Genome cDNA 20110601C-000715


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000715
         (1037 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001068966.1| DDRGK domain-containing protein 1 [Bos tauru...   166   9e-56

>ref|NP_001068966.1| DDRGK domain-containing protein 1 [Bos taurus].
          Length = 313

 Score =  166 bits (419), Expect(2) = 9e-56
 Identities = 115/259 (44%), Positives = 119/259 (45%), Gaps = 3/259 (1%)
 Frame = +3

Query: 123 GFILFLTXXXXXXXXXXXEPLNNEEELGVAGRVAQP---ELDEQXXXXXXXXXXXXXXXL 293
           G ILFLT           EPL+NEE    AGRVA+P   E +EQ               L
Sbjct: 16  GLILFLTRGRGRAAAAAQEPLHNEEVPAAAGRVARPQPLEPEEQRAAGRPRRRRDLGSRL 75

Query: 294 XXXXXXXXXXWAXXXXXXXXXXXXXXXXXXXXKPVETHLSGKIGAKKLRKLXXXXXXXXX 473
                     WA                    KPVETHLSGKIGAKKLRKL         
Sbjct: 76  QAQRRAQRVAWADENEEEAIIQAQEEEDIE--KPVETHLSGKIGAKKLRKLEEKQARKAQ 133

Query: 474 XXXXXXXXXXXXXLESQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLKLKE 653
                        LESQ                                     YLKLKE
Sbjct: 134 REAEEAEREERKRLESQREAEWKKEEERLRLEEEQKEEEERKAQEEQAQREHEEYLKLKE 193

Query: 654 SFXXXXXXXXXXXXXXXSHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 833
           +F               SHSFL EFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA
Sbjct: 194 TFVVVEEGVGETMTEEQSHSFLAEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 253

Query: 834 EGTLTGVIDDRGKFIYITP 890
           EGTLTGVIDDRGKFIYITP
Sbjct: 254 EGTLTGVIDDRGKFIYITP 272



 Score = 70.5 bits (171), Expect(2) = 9e-56
 Identities = 35/35 (100%), Positives = 35/35 (100%)
 Frame = +1

Query: 889 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 993
           PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE
Sbjct: 272 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 306


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,807,276
Number of extensions: 757864
Number of successful extensions: 3196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3189
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000715
         (1037 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_534363.2| PREDICTED: similar to Protein C20orf116 homolog...   167   2e-55

>ref|XP_534363.2| PREDICTED: similar to Protein C20orf116 homolog precursor [Canis
           familiaris].
          Length = 315

 Score =  167 bits (423), Expect(2) = 2e-55
 Identities = 114/259 (44%), Positives = 121/259 (46%), Gaps = 3/259 (1%)
 Frame = +3

Query: 123 GFILFLTXXXXXXXXXXXEPLNNEEELGVAGRVAQP---ELDEQXXXXXXXXXXXXXXXL 293
           G ILFLT           +PL+NEE+  VAG VAQP   E +EQ               L
Sbjct: 16  GLILFLTRSRGRTAAAGQDPLHNEEQPIVAGSVAQPRPLEPEEQRAGGRPRRRRDLGSRL 75

Query: 294 XXXXXXXXXXWAXXXXXXXXXXXXXXXXXXXXKPVETHLSGKIGAKKLRKLXXXXXXXXX 473
                     WA                    KPVE+HLSGKIGAKKLRKL         
Sbjct: 76  QAQRRAQRVAWAEVEENEEEVIIPAQEEESIEKPVESHLSGKIGAKKLRKLEEKQARKAQ 135

Query: 474 XXXXXXXXXXXXXLESQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLKLKE 653
                        LESQ                                     YLKLKE
Sbjct: 136 REAEEAEREERKRLESQREAEWKKEEERLRLEEEQKEEEERKAREEQAQREHEEYLKLKE 195

Query: 654 SFXXXXXXXXXXXXXXXSHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 833
           +F               S+SFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA
Sbjct: 196 AFVVEEEGVGDTMTEEQSNSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 255

Query: 834 EGTLTGVIDDRGKFIYITP 890
           EGTLTGVIDDRGKFIYITP
Sbjct: 256 EGTLTGVIDDRGKFIYITP 274



 Score = 67.8 bits (164), Expect(2) = 2e-55
 Identities = 33/35 (94%), Positives = 35/35 (100%)
 Frame = +1

Query: 889 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 993
           PEELAAVANFIRQRGRVSITELAQASNSLI+WG+E
Sbjct: 274 PEELAAVANFIRQRGRVSITELAQASNSLISWGQE 308


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,963,355
Number of extensions: 760223
Number of successful extensions: 3152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3145
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000715
         (1037 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_076424.1| DDRGK domain-containing protein 1 precursor [Ho...   166   3e-55

>ref|NP_076424.1| DDRGK domain-containing protein 1 precursor [Homo sapiens].
          Length = 314

 Score =  166 bits (420), Expect(2) = 3e-55
 Identities = 115/259 (44%), Positives = 119/259 (45%), Gaps = 3/259 (1%)
 Frame = +3

Query: 123 GFILFLTXXXXXXXXXXXEPLNNEEELGVAGRVAQP---ELDEQXXXXXXXXXXXXXXXL 293
           GFILFLT           EPL+NEE  G AGRVAQP   E +E                L
Sbjct: 16  GFILFLTRSRGRAASAGQEPLHNEELAG-AGRVAQPGPLEPEEPRAGGRPRRRRDLGSRL 74

Query: 294 XXXXXXXXXXWAXXXXXXXXXXXXXXXXXXXXKPVETHLSGKIGAKKLRKLXXXXXXXXX 473
                     WA                    KP ETHLSGKIGAKKLRKL         
Sbjct: 75  QAQRRAQRVAWAEADENEEEAVILAQEEEGVEKPAETHLSGKIGAKKLRKLEEKQARKAQ 134

Query: 474 XXXXXXXXXXXXXLESQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLKLKE 653
                        LESQ                                     YLKLKE
Sbjct: 135 REAEEAEREERKRLESQREAEWKKEEERLRLEEEQKEEEERKAREEQAQREHEEYLKLKE 194

Query: 654 SFXXXXXXXXXXXXXXXSHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 833
           +F               S SFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA
Sbjct: 195 AFVVEEEGVGETMTEEQSQSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 254

Query: 834 EGTLTGVIDDRGKFIYITP 890
           EGT+TGVIDDRGKFIYITP
Sbjct: 255 EGTITGVIDDRGKFIYITP 273



 Score = 68.6 bits (166), Expect(2) = 3e-55
 Identities = 34/35 (97%), Positives = 34/35 (97%)
 Frame = +1

Query: 889 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 993
           PEELAAVANFIRQRGRVSI ELAQASNSLIAWGRE
Sbjct: 273 PEELAAVANFIRQRGRVSIAELAQASNSLIAWGRE 307


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,284,259
Number of extensions: 734543
Number of successful extensions: 2917
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2906
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000715
         (1037 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_084108.1| DDRGK domain-containing protein 1 precursor [Mu...   150   5e-50

>ref|NP_084108.1| DDRGK domain-containing protein 1 precursor [Mus musculus].
          Length = 315

 Score =  150 bits (379), Expect(2) = 5e-50
 Identities = 104/259 (40%), Positives = 112/259 (43%), Gaps = 3/259 (1%)
 Frame = +3

Query: 123 GFILFLTXXXXXXXXXXXEPLNNEEELGVAGRVAQP---ELDEQXXXXXXXXXXXXXXXL 293
           G ILFLT           EPL+NEEE   AG+V +    E +EQ               L
Sbjct: 16  GLILFLTRSRGRAAAADGEPLHNEEERAGAGQVGRSLPQESEEQRTGSRPRRRRDLGSRL 75

Query: 294 XXXXXXXXXXWAXXXXXXXXXXXXXXXXXXXXKPVETHLSGKIGAKKLRKLXXXXXXXXX 473
                     W                     KP E H +GKIGAKKLRKL         
Sbjct: 76  QAQRRAQRVAWEDGDENVGQTVIPAQEEEGIEKPAEVHPTGKIGAKKLRKLEEKQARKAQ 135

Query: 474 XXXXXXXXXXXXXLESQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLKLKE 653
                        LESQ                                     YLKLKE
Sbjct: 136 REAEEAEREERKRLESQREAEWKKEEERLRLKEEQKEEEERKAQEEQARREHEEYLKLKE 195

Query: 654 SFXXXXXXXXXXXXXXXSHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 833
           +F               SHSFLTEFINYIK+SKVVLLEDLA Q+GLRTQD INRIQDLL 
Sbjct: 196 AFVVEEEGVSETMTEEQSHSFLTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLT 255

Query: 834 EGTLTGVIDDRGKFIYITP 890
           EGTLTGVIDDRGKFIYITP
Sbjct: 256 EGTLTGVIDDRGKFIYITP 274



 Score = 66.6 bits (161), Expect(2) = 5e-50
 Identities = 32/35 (91%), Positives = 35/35 (100%)
 Frame = +1

Query: 889 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 993
           PEELAAVANFIRQRGRVSITELAQASNSLI+WG++
Sbjct: 274 PEELAAVANFIRQRGRVSITELAQASNSLISWGQD 308


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,730,794
Number of extensions: 601563
Number of successful extensions: 2263
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2253
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000715
         (1037 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001177141.1| DDRGK domain-containing protein 1 [Sus scrof...   197   2e-65

>ref|NP_001177141.1| DDRGK domain-containing protein 1 [Sus scrofa].
          Length = 312

 Score =  197 bits (502), Expect(2) = 2e-65
 Identities = 126/256 (49%), Positives = 126/256 (49%)
 Frame = +3

Query: 123 GFILFLTXXXXXXXXXXXEPLNNEEELGVAGRVAQPELDEQXXXXXXXXXXXXXXXLXXX 302
           GFILFLT           EPLNNEEELGVAGRVAQPELDEQ               L   
Sbjct: 16  GFILFLTRRRGRAAAAGREPLNNEEELGVAGRVAQPELDEQRAGGRPRRRRDLGSRLQAQ 75

Query: 303 XXXXXXXWAXXXXXXXXXXXXXXXXXXXXKPVETHLSGKIGAKKLRKLXXXXXXXXXXXX 482
                  WA                    KPVETHLSGKIGAKKLRKL            
Sbjct: 76  RRAQRVAWAEVDEDEEEVIIPALEEEIIEKPVETHLSGKIGAKKLRKLEEKQARKAQREA 135

Query: 483 XXXXXXXXXXLESQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLKLKESFX 662
                     LESQ                                     YLKLKESF 
Sbjct: 136 EEAEREERKRLESQREAEWKKEEERLRLEEEQKEEEERRAREEQAQREHEEYLKLKESFV 195

Query: 663 XXXXXXXXXXXXXXSHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLAEGT 842
                         SHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLAEGT
Sbjct: 196 VEEEGVGETMTEEESHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLAEGT 255

Query: 843 LTGVIDDRGKFIYITP 890
           LTGVIDDRGKFIYITP
Sbjct: 256 LTGVIDDRGKFIYITP 271



 Score = 70.5 bits (171), Expect(2) = 2e-65
 Identities = 35/35 (100%), Positives = 35/35 (100%)
 Frame = +1

Query: 889 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 993
           PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE
Sbjct: 271 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 305


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,235,234
Number of extensions: 521120
Number of successful extensions: 1943
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1940
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000715
         (1037 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr17                                                         398   e-108

>Sscrofa_Chr17 
||          Length = 69701581

 Score =  398 bits (201), Expect = e-108
 Identities = 201/201 (100%)
 Strand = Plus / Plus

                                                                            
Query: 166      cagctggccgagagccattgaacaatgaggaggagctgggagtagcaggccgagtggccc 225
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36852454 cagctggccgagagccattgaacaatgaggaggagctgggagtagcaggccgagtggccc 36852513

                                                                            
Query: 226      agcctgagctcgatgagcagagagccggtggcaggcctcggcgtcggagggatctgggca 285
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36852514 agcctgagctcgatgagcagagagccggtggcaggcctcggcgtcggagggatctgggca 36852573

                                                                            
Query: 286      gccgcctgcaagcccagcgtcgagcccagcgggtagcttgggcagaagtggatgaggatg 345
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36852574 gccgcctgcaagcccagcgtcgagcccagcgggtagcttgggcagaagtggatgaggatg 36852633

                                     
Query: 346      aagaggaagtcatcatcccag 366
                |||||||||||||||||||||
Sbjct: 36852634 aagaggaagtcatcatcccag 36852654



 Score =  357 bits (180), Expect = 8e-96
 Identities = 190/192 (98%), Gaps = 1/192 (0%)
 Strand = Plus / Plus

                                                                            
Query: 846      acaggtgtgattgacgaccggggcaagttcatctacataacccccggaggaactggctgc 905
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 36862205 acaggtgtgattgacgaccggggcaagttcatctacataacccc-ggaggaactggctgc 36862263

                                                                            
Query: 906      cgtggctaacttcatccgacagcggggccgggtatccatcacggaacttgcccaggccag 965
                ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 36862264 cgtggctaacttcatccgacagcggggccgggtatccatcacggagcttgcccaggccag 36862323

                                                                            
Query: 966      caactccctcatcgcctggggccgggagccccctgcccaggccccagcctgactgagccc 1025
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36862324 caactccctcatcgcctggggccgggagccccctgcccaggccccagcctgactgagccc 36862383

                            
Query: 1026     ttccctcttgga 1037
                ||||||||||||
Sbjct: 36862384 ttccctcttgga 36862395



 Score =  333 bits (168), Expect = 1e-88
 Identities = 168/168 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        cacatgggcattgggcggggcctaggagatccagggcctcagggtggacgcgcaggttcc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36851089 cacatgggcattgggcggggcctaggagatccagggcctcagggtggacgcgcaggttcc 36851148

                                                                            
Query: 61       gcctggaagccaccgtcatggtggctcccgtggtgtatttggtggtggcggctctgctcg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36851149 gcctggaagccaccgtcatggtggctcccgtggtgtatttggtggtggcggctctgctcg 36851208

                                                                
Query: 121      ttggctttatcctcttcttgacccgcaggcggggccgggcagcagcag 168
                ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36851209 ttggctttatcctcttcttgacccgcaggcggggccgggcagcagcag 36851256



 Score =  236 bits (119), Expect = 2e-59
 Identities = 119/119 (100%)
 Strand = Plus / Plus

                                                                            
Query: 364      cagccctggaggaagaaatcatcgagaagccagtggaaactcacctgtcggggaaaattg 423
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36853822 cagccctggaggaagaaatcatcgagaagccagtggaaactcacctgtcggggaaaattg 36853881

                                                                           
Query: 424      gagccaaaaaactacggaagctggaggagaaacaagcacgaaaagcccagcgtgaggca 482
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36853882 gagccaaaaaactacggaagctggaggagaaacaagcacgaaaagcccagcgtgaggca 36853940



 Score =  206 bits (104), Expect = 2e-50
 Identities = 104/104 (100%)
 Strand = Plus / Plus

                                                                            
Query: 601      cccgagaggagcaggcccagcgggagcatgaggagtatctgaaactgaaggagtccttcg 660
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36857642 cccgagaggagcaggcccagcgggagcatgaggagtatctgaaactgaaggagtccttcg 36857701

                                                            
Query: 661      tggtggaggaggagggcgtgggcgagaccatgaccgaggaagag 704
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36857702 tggtggaggaggagggcgtgggcgagaccatgaccgaggaagag 36857745



 Score =  174 bits (88), Expect = 6e-41
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                            
Query: 478      aggcagaggaggcggagcgggaggagcggaaacgcctagagtcccagcgggaggcagagt 537
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36854154 aggcagaggaggcggagcgggaggagcggaaacgcctagagtcccagcgggaggcagagt 36854213

                                            
Query: 538      ggaagaaggaggaggagcggcttcgcct 565
                ||||||||||||||||||||||||||||
Sbjct: 36854214 ggaagaaggaggaggagcggcttcgcct 36854241



 Score =  119 bits (60), Expect = 3e-24
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                            
Query: 742      agcagtccaaggtcgtgctcttggaagacctggcctcccaggtgggcctgcggactcagg 801
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36861244 agcagtccaaggtcgtgctcttggaagacctggcctcccaggtgggcctgcggactcagg 36861303



 Score =  109 bits (55), Expect = 3e-21
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                       
Query: 798      caggataccataaaccgcatccaggatctgctggccgagggcactctgacaggtg 852
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36861833 caggataccataaaccgcatccaggatctgctggccgagggcactctgacaggtg 36861887



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                         
Query: 703      agtcccacagcttcctgaccgagttcatcaactacattaag 743
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 36858044 agtcccacagcttcctgaccgagttcatcaactacattaag 36858084


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,508,210
Number of extensions: 234
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 9
Length of query: 1037
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1016
Effective length of database: 2,808,413,156
Effective search space: 2853347766496
Effective search space used: 2853347766496
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)