Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000715
(1037 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068966.1| DDRGK domain-containing protein 1 [Bos tauru... 166 9e-56
>ref|NP_001068966.1| DDRGK domain-containing protein 1 [Bos taurus].
Length = 313
Score = 166 bits (419), Expect(2) = 9e-56
Identities = 115/259 (44%), Positives = 119/259 (45%), Gaps = 3/259 (1%)
Frame = +3
Query: 123 GFILFLTXXXXXXXXXXXEPLNNEEELGVAGRVAQP---ELDEQXXXXXXXXXXXXXXXL 293
G ILFLT EPL+NEE AGRVA+P E +EQ L
Sbjct: 16 GLILFLTRGRGRAAAAAQEPLHNEEVPAAAGRVARPQPLEPEEQRAAGRPRRRRDLGSRL 75
Query: 294 XXXXXXXXXXWAXXXXXXXXXXXXXXXXXXXXKPVETHLSGKIGAKKLRKLXXXXXXXXX 473
WA KPVETHLSGKIGAKKLRKL
Sbjct: 76 QAQRRAQRVAWADENEEEAIIQAQEEEDIE--KPVETHLSGKIGAKKLRKLEEKQARKAQ 133
Query: 474 XXXXXXXXXXXXXLESQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLKLKE 653
LESQ YLKLKE
Sbjct: 134 REAEEAEREERKRLESQREAEWKKEEERLRLEEEQKEEEERKAQEEQAQREHEEYLKLKE 193
Query: 654 SFXXXXXXXXXXXXXXXSHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 833
+F SHSFL EFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA
Sbjct: 194 TFVVVEEGVGETMTEEQSHSFLAEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 253
Query: 834 EGTLTGVIDDRGKFIYITP 890
EGTLTGVIDDRGKFIYITP
Sbjct: 254 EGTLTGVIDDRGKFIYITP 272
Score = 70.5 bits (171), Expect(2) = 9e-56
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +1
Query: 889 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 993
PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE
Sbjct: 272 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 306
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,807,276
Number of extensions: 757864
Number of successful extensions: 3196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3189
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000715
(1037 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534363.2| PREDICTED: similar to Protein C20orf116 homolog... 167 2e-55
>ref|XP_534363.2| PREDICTED: similar to Protein C20orf116 homolog precursor [Canis
familiaris].
Length = 315
Score = 167 bits (423), Expect(2) = 2e-55
Identities = 114/259 (44%), Positives = 121/259 (46%), Gaps = 3/259 (1%)
Frame = +3
Query: 123 GFILFLTXXXXXXXXXXXEPLNNEEELGVAGRVAQP---ELDEQXXXXXXXXXXXXXXXL 293
G ILFLT +PL+NEE+ VAG VAQP E +EQ L
Sbjct: 16 GLILFLTRSRGRTAAAGQDPLHNEEQPIVAGSVAQPRPLEPEEQRAGGRPRRRRDLGSRL 75
Query: 294 XXXXXXXXXXWAXXXXXXXXXXXXXXXXXXXXKPVETHLSGKIGAKKLRKLXXXXXXXXX 473
WA KPVE+HLSGKIGAKKLRKL
Sbjct: 76 QAQRRAQRVAWAEVEENEEEVIIPAQEEESIEKPVESHLSGKIGAKKLRKLEEKQARKAQ 135
Query: 474 XXXXXXXXXXXXXLESQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLKLKE 653
LESQ YLKLKE
Sbjct: 136 REAEEAEREERKRLESQREAEWKKEEERLRLEEEQKEEEERKAREEQAQREHEEYLKLKE 195
Query: 654 SFXXXXXXXXXXXXXXXSHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 833
+F S+SFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA
Sbjct: 196 AFVVEEEGVGDTMTEEQSNSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 255
Query: 834 EGTLTGVIDDRGKFIYITP 890
EGTLTGVIDDRGKFIYITP
Sbjct: 256 EGTLTGVIDDRGKFIYITP 274
Score = 67.8 bits (164), Expect(2) = 2e-55
Identities = 33/35 (94%), Positives = 35/35 (100%)
Frame = +1
Query: 889 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 993
PEELAAVANFIRQRGRVSITELAQASNSLI+WG+E
Sbjct: 274 PEELAAVANFIRQRGRVSITELAQASNSLISWGQE 308
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,963,355
Number of extensions: 760223
Number of successful extensions: 3152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3145
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000715
(1037 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076424.1| DDRGK domain-containing protein 1 precursor [Ho... 166 3e-55
>ref|NP_076424.1| DDRGK domain-containing protein 1 precursor [Homo sapiens].
Length = 314
Score = 166 bits (420), Expect(2) = 3e-55
Identities = 115/259 (44%), Positives = 119/259 (45%), Gaps = 3/259 (1%)
Frame = +3
Query: 123 GFILFLTXXXXXXXXXXXEPLNNEEELGVAGRVAQP---ELDEQXXXXXXXXXXXXXXXL 293
GFILFLT EPL+NEE G AGRVAQP E +E L
Sbjct: 16 GFILFLTRSRGRAASAGQEPLHNEELAG-AGRVAQPGPLEPEEPRAGGRPRRRRDLGSRL 74
Query: 294 XXXXXXXXXXWAXXXXXXXXXXXXXXXXXXXXKPVETHLSGKIGAKKLRKLXXXXXXXXX 473
WA KP ETHLSGKIGAKKLRKL
Sbjct: 75 QAQRRAQRVAWAEADENEEEAVILAQEEEGVEKPAETHLSGKIGAKKLRKLEEKQARKAQ 134
Query: 474 XXXXXXXXXXXXXLESQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLKLKE 653
LESQ YLKLKE
Sbjct: 135 REAEEAEREERKRLESQREAEWKKEEERLRLEEEQKEEEERKAREEQAQREHEEYLKLKE 194
Query: 654 SFXXXXXXXXXXXXXXXSHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 833
+F S SFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA
Sbjct: 195 AFVVEEEGVGETMTEEQSQSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 254
Query: 834 EGTLTGVIDDRGKFIYITP 890
EGT+TGVIDDRGKFIYITP
Sbjct: 255 EGTITGVIDDRGKFIYITP 273
Score = 68.6 bits (166), Expect(2) = 3e-55
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = +1
Query: 889 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 993
PEELAAVANFIRQRGRVSI ELAQASNSLIAWGRE
Sbjct: 273 PEELAAVANFIRQRGRVSIAELAQASNSLIAWGRE 307
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,284,259
Number of extensions: 734543
Number of successful extensions: 2917
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2906
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000715
(1037 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084108.1| DDRGK domain-containing protein 1 precursor [Mu... 150 5e-50
>ref|NP_084108.1| DDRGK domain-containing protein 1 precursor [Mus musculus].
Length = 315
Score = 150 bits (379), Expect(2) = 5e-50
Identities = 104/259 (40%), Positives = 112/259 (43%), Gaps = 3/259 (1%)
Frame = +3
Query: 123 GFILFLTXXXXXXXXXXXEPLNNEEELGVAGRVAQP---ELDEQXXXXXXXXXXXXXXXL 293
G ILFLT EPL+NEEE AG+V + E +EQ L
Sbjct: 16 GLILFLTRSRGRAAAADGEPLHNEEERAGAGQVGRSLPQESEEQRTGSRPRRRRDLGSRL 75
Query: 294 XXXXXXXXXXWAXXXXXXXXXXXXXXXXXXXXKPVETHLSGKIGAKKLRKLXXXXXXXXX 473
W KP E H +GKIGAKKLRKL
Sbjct: 76 QAQRRAQRVAWEDGDENVGQTVIPAQEEEGIEKPAEVHPTGKIGAKKLRKLEEKQARKAQ 135
Query: 474 XXXXXXXXXXXXXLESQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLKLKE 653
LESQ YLKLKE
Sbjct: 136 REAEEAEREERKRLESQREAEWKKEEERLRLKEEQKEEEERKAQEEQARREHEEYLKLKE 195
Query: 654 SFXXXXXXXXXXXXXXXSHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLA 833
+F SHSFLTEFINYIK+SKVVLLEDLA Q+GLRTQD INRIQDLL
Sbjct: 196 AFVVEEEGVSETMTEEQSHSFLTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLT 255
Query: 834 EGTLTGVIDDRGKFIYITP 890
EGTLTGVIDDRGKFIYITP
Sbjct: 256 EGTLTGVIDDRGKFIYITP 274
Score = 66.6 bits (161), Expect(2) = 5e-50
Identities = 32/35 (91%), Positives = 35/35 (100%)
Frame = +1
Query: 889 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 993
PEELAAVANFIRQRGRVSITELAQASNSLI+WG++
Sbjct: 274 PEELAAVANFIRQRGRVSITELAQASNSLISWGQD 308
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,730,794
Number of extensions: 601563
Number of successful extensions: 2263
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2253
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000715
(1037 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177141.1| DDRGK domain-containing protein 1 [Sus scrof... 197 2e-65
>ref|NP_001177141.1| DDRGK domain-containing protein 1 [Sus scrofa].
Length = 312
Score = 197 bits (502), Expect(2) = 2e-65
Identities = 126/256 (49%), Positives = 126/256 (49%)
Frame = +3
Query: 123 GFILFLTXXXXXXXXXXXEPLNNEEELGVAGRVAQPELDEQXXXXXXXXXXXXXXXLXXX 302
GFILFLT EPLNNEEELGVAGRVAQPELDEQ L
Sbjct: 16 GFILFLTRRRGRAAAAGREPLNNEEELGVAGRVAQPELDEQRAGGRPRRRRDLGSRLQAQ 75
Query: 303 XXXXXXXWAXXXXXXXXXXXXXXXXXXXXKPVETHLSGKIGAKKLRKLXXXXXXXXXXXX 482
WA KPVETHLSGKIGAKKLRKL
Sbjct: 76 RRAQRVAWAEVDEDEEEVIIPALEEEIIEKPVETHLSGKIGAKKLRKLEEKQARKAQREA 135
Query: 483 XXXXXXXXXXLESQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLKLKESFX 662
LESQ YLKLKESF
Sbjct: 136 EEAEREERKRLESQREAEWKKEEERLRLEEEQKEEEERRAREEQAQREHEEYLKLKESFV 195
Query: 663 XXXXXXXXXXXXXXSHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLAEGT 842
SHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLAEGT
Sbjct: 196 VEEEGVGETMTEEESHSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLAEGT 255
Query: 843 LTGVIDDRGKFIYITP 890
LTGVIDDRGKFIYITP
Sbjct: 256 LTGVIDDRGKFIYITP 271
Score = 70.5 bits (171), Expect(2) = 2e-65
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +1
Query: 889 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 993
PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE
Sbjct: 271 PEELAAVANFIRQRGRVSITELAQASNSLIAWGRE 305
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,235,234
Number of extensions: 521120
Number of successful extensions: 1943
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1940
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000715
(1037 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 398 e-108
>Sscrofa_Chr17
|| Length = 69701581
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 166 cagctggccgagagccattgaacaatgaggaggagctgggagtagcaggccgagtggccc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36852454 cagctggccgagagccattgaacaatgaggaggagctgggagtagcaggccgagtggccc 36852513
Query: 226 agcctgagctcgatgagcagagagccggtggcaggcctcggcgtcggagggatctgggca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36852514 agcctgagctcgatgagcagagagccggtggcaggcctcggcgtcggagggatctgggca 36852573
Query: 286 gccgcctgcaagcccagcgtcgagcccagcgggtagcttgggcagaagtggatgaggatg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36852574 gccgcctgcaagcccagcgtcgagcccagcgggtagcttgggcagaagtggatgaggatg 36852633
Query: 346 aagaggaagtcatcatcccag 366
|||||||||||||||||||||
Sbjct: 36852634 aagaggaagtcatcatcccag 36852654
Score = 357 bits (180), Expect = 8e-96
Identities = 190/192 (98%), Gaps = 1/192 (0%)
Strand = Plus / Plus
Query: 846 acaggtgtgattgacgaccggggcaagttcatctacataacccccggaggaactggctgc 905
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 36862205 acaggtgtgattgacgaccggggcaagttcatctacataacccc-ggaggaactggctgc 36862263
Query: 906 cgtggctaacttcatccgacagcggggccgggtatccatcacggaacttgcccaggccag 965
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 36862264 cgtggctaacttcatccgacagcggggccgggtatccatcacggagcttgcccaggccag 36862323
Query: 966 caactccctcatcgcctggggccgggagccccctgcccaggccccagcctgactgagccc 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36862324 caactccctcatcgcctggggccgggagccccctgcccaggccccagcctgactgagccc 36862383
Query: 1026 ttccctcttgga 1037
||||||||||||
Sbjct: 36862384 ttccctcttgga 36862395
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 1 cacatgggcattgggcggggcctaggagatccagggcctcagggtggacgcgcaggttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36851089 cacatgggcattgggcggggcctaggagatccagggcctcagggtggacgcgcaggttcc 36851148
Query: 61 gcctggaagccaccgtcatggtggctcccgtggtgtatttggtggtggcggctctgctcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36851149 gcctggaagccaccgtcatggtggctcccgtggtgtatttggtggtggcggctctgctcg 36851208
Query: 121 ttggctttatcctcttcttgacccgcaggcggggccgggcagcagcag 168
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36851209 ttggctttatcctcttcttgacccgcaggcggggccgggcagcagcag 36851256
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 364 cagccctggaggaagaaatcatcgagaagccagtggaaactcacctgtcggggaaaattg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36853822 cagccctggaggaagaaatcatcgagaagccagtggaaactcacctgtcggggaaaattg 36853881
Query: 424 gagccaaaaaactacggaagctggaggagaaacaagcacgaaaagcccagcgtgaggca 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36853882 gagccaaaaaactacggaagctggaggagaaacaagcacgaaaagcccagcgtgaggca 36853940
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 601 cccgagaggagcaggcccagcgggagcatgaggagtatctgaaactgaaggagtccttcg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36857642 cccgagaggagcaggcccagcgggagcatgaggagtatctgaaactgaaggagtccttcg 36857701
Query: 661 tggtggaggaggagggcgtgggcgagaccatgaccgaggaagag 704
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36857702 tggtggaggaggagggcgtgggcgagaccatgaccgaggaagag 36857745
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 478 aggcagaggaggcggagcgggaggagcggaaacgcctagagtcccagcgggaggcagagt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36854154 aggcagaggaggcggagcgggaggagcggaaacgcctagagtcccagcgggaggcagagt 36854213
Query: 538 ggaagaaggaggaggagcggcttcgcct 565
||||||||||||||||||||||||||||
Sbjct: 36854214 ggaagaaggaggaggagcggcttcgcct 36854241
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 742 agcagtccaaggtcgtgctcttggaagacctggcctcccaggtgggcctgcggactcagg 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36861244 agcagtccaaggtcgtgctcttggaagacctggcctcccaggtgggcctgcggactcagg 36861303
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 798 caggataccataaaccgcatccaggatctgctggccgagggcactctgacaggtg 852
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Sbjct: 36861833 caggataccataaaccgcatccaggatctgctggccgagggcactctgacaggtg 36861887
Score = 81.8 bits (41), Expect = 7e-13
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 703 agtcccacagcttcctgaccgagttcatcaactacattaag 743
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Sbjct: 36858044 agtcccacagcttcctgaccgagttcatcaactacattaag 36858084
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,508,210
Number of extensions: 234
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 9
Length of query: 1037
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1016
Effective length of database: 2,808,413,156
Effective search space: 2853347766496
Effective search space used: 2853347766496
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)