Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000730
(2213 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029620.1| integrin beta-1-binding protein 1 [Bos tauru... 305 1e-82
Alignment gi|NP_001014411.1| histone H3.3 [Bos taurus]. 265 2e-70
Alignment gi|NP_001229500.1| H3 histone, family 3B [Bos taurus]. 265 2e-70
Alignment gi|XP_002688969.1| PREDICTED: histone H3.3B-like [Bos taurus]. 261 2e-69
Alignment gi|XP_002684244.1| PREDICTED: H3 histone, family 3A [Bos taurus]. 261 2e-69
Alignment gi|XP_002688445.1| PREDICTED: histone H3.3B-like [Bos taurus]. 260 4e-69
Alignment gi|NP_001092840.1| H3 histone, family 3C [Bos taurus]. 258 1e-68
Alignment gi|NP_001160041.1| histone H3.2 [Bos taurus]. 258 1e-68
Alignment gi|XP_002686103.1| PREDICTED: histone cluster 2, H3c2-like [Bos... 258 1e-68
Alignment gi|XP_002686099.1| PREDICTED: histone cluster 2, H3c2-like [Bos... 258 1e-68
>ref|NP_001029620.1| integrin beta-1-binding protein 1 [Bos taurus].
Length = 200
Score = 305 bits (781), Expect = 1e-82
Identities = 154/171 (90%), Positives = 159/171 (92%)
Frame = +2
Query: 842 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 1021
LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89
Query: 1022 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 1201
NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLG 149
Query: 1202 XXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 1354
TTDA+++EYSLWVYQC+SLEQAQAICKVL+TAFDSVLTSEKP
Sbjct: 150 SGKSLLALKTTDANNQEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKP 200
>ref|NP_001014411.1| histone H3.3 [Bos taurus].
Length = 136
Score = 265 bits (676), Expect = 2e-70
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_001229500.1| H3 histone, family 3B [Bos taurus].
Length = 136
Score = 265 bits (676), Expect = 2e-70
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_002688969.1| PREDICTED: histone H3.3B-like [Bos taurus].
Length = 136
Score = 261 bits (666), Expect = 2e-69
Identities = 134/136 (98%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTA KSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTASKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
+PKDIQLARRIRGERA
Sbjct: 121 IPKDIQLARRIRGERA 136
>ref|XP_002684244.1| PREDICTED: H3 histone, family 3A [Bos taurus].
Length = 136
Score = 261 bits (666), Expect = 2e-69
Identities = 134/136 (98%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTA KSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTASKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
+PKDIQLARRIRGERA
Sbjct: 121 IPKDIQLARRIRGERA 136
>ref|XP_002688445.1| PREDICTED: histone H3.3B-like [Bos taurus].
Length = 136
Score = 260 bits (664), Expect = 4e-69
Identities = 133/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARK+APS GGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKTAPSIGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQD+KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDYKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_001092840.1| H3 histone, family 3C [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 1e-68
Identities = 131/136 (96%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQL TKAARKSAPSTGG+KKPHRYRPGTVALREIRR+QKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLVTKAARKSAPSTGGMKKPHRYRPGTVALREIRRHQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT+
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTV 120
Query: 493 MPKDIQLARRIRGERA 540
MP+DIQLARRIRGERA
Sbjct: 121 MPRDIQLARRIRGERA 136
>ref|NP_001160041.1| histone H3.2 [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 1e-68
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_002686103.1| PREDICTED: histone cluster 2, H3c2-like [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 1e-68
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_002686099.1| PREDICTED: histone cluster 2, H3c2-like [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 1e-68
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,368,012
Number of extensions: 2197854
Number of successful extensions: 6064
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 6031
Number of HSP's successfully gapped: 60
Length of query: 737
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 627
Effective length of database: 14,041,694
Effective search space: 8804142138
Effective search space used: 8804142138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000730
(2213 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532868.1| PREDICTED: similar to Integrin beta-1 binding p... 304 2e-82
Alignment gi|XP_858804.1| PREDICTED: similar to H3 histone, family 3B iso... 265 2e-70
Alignment gi|XP_533123.2| PREDICTED: similar to H3 histone, family 3B iso... 265 2e-70
Alignment gi|XP_537232.1| PREDICTED: similar to H3 histone, family 3B iso... 265 2e-70
Alignment gi|XP_859248.1| PREDICTED: similar to histone 1, H2ai (predicte... 259 1e-68
Alignment gi|XP_537880.2| PREDICTED: similar to histone 1, H2ai (predicte... 259 1e-68
Alignment gi|XP_540290.1| PREDICTED: similar to H3 histone, family 2 isof... 258 1e-68
Alignment gi|XP_540285.1| PREDICTED: similar to H3 histone, family 2 isof... 258 1e-68
Alignment gi|XP_850744.1| PREDICTED: similar to CG31613-PA [Canis familia... 258 1e-68
Alignment gi|XP_854287.1| PREDICTED: similar to histone 1, H2ai (predicte... 256 5e-68
>ref|XP_532868.1| PREDICTED: similar to Integrin beta-1 binding protein 1 (Integrin
cytoplasmic domain-associated protein 1) (ICAP-1) [Canis
familiaris].
Length = 200
Score = 304 bits (779), Expect = 2e-82
Identities = 154/171 (90%), Positives = 158/171 (92%)
Frame = +2
Query: 842 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 1021
LGGLSRSSTVASLDTDSTKSSGQSNNNS+TCAEFRIKYVGAIEKLK SEGKSLEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSETCAEFRIKYVGAIEKLKFSEGKSLEGPLDLI 89
Query: 1022 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 1201
NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLG 149
Query: 1202 XXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 1354
TTDAS+EEYSLWVYQC+SLEQAQAICKVL+TAFDSVLTSEKP
Sbjct: 150 AGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKP 200
>ref|XP_858804.1| PREDICTED: similar to H3 histone, family 3B isoform 4 [Canis
familiaris].
Length = 136
Score = 265 bits (676), Expect = 2e-70
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_533123.2| PREDICTED: similar to H3 histone, family 3B isoform 2 [Canis
familiaris].
Length = 136
Score = 265 bits (676), Expect = 2e-70
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_537232.1| PREDICTED: similar to H3 histone, family 3B isoform 1 [Canis
familiaris].
Length = 136
Score = 265 bits (676), Expect = 2e-70
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_859248.1| PREDICTED: similar to histone 1, H2ai (predicted) isoform 3 [Canis
familiaris].
Length = 259
Score = 259 bits (661), Expect = 1e-68
Identities = 133/140 (95%), Positives = 137/140 (97%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA*VKA 552
MPKDIQLARRIRGERA VK+
Sbjct: 121 MPKDIQLARRIRGERAEVKS 140
>ref|XP_537880.2| PREDICTED: similar to histone 1, H2ai (predicted) isoform 1 [Canis
familiaris].
Length = 259
Score = 259 bits (661), Expect = 1e-68
Identities = 133/140 (95%), Positives = 137/140 (97%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA*VKA 552
MPKDIQLARRIRGERA VK+
Sbjct: 121 MPKDIQLARRIRGERAEVKS 140
>ref|XP_540290.1| PREDICTED: similar to H3 histone, family 2 isoform 2 [Canis
familiaris].
Length = 174
Score = 258 bits (660), Expect = 1e-68
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 39 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 98
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 99 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 158
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 159 MPKDIQLARRIRGERA 174
>ref|XP_540285.1| PREDICTED: similar to H3 histone, family 2 isoform 2 [Canis
familiaris].
Length = 174
Score = 258 bits (660), Expect = 1e-68
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 39 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 98
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 99 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 158
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 159 MPKDIQLARRIRGERA 174
>ref|XP_850744.1| PREDICTED: similar to CG31613-PA [Canis familiaris].
Length = 136
Score = 258 bits (660), Expect = 1e-68
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_854287.1| PREDICTED: similar to histone 1, H2ai (predicted) [Canis
familiaris].
Length = 156
Score = 256 bits (655), Expect = 5e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 80
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 81 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 140
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 141 MPKDIQLARRIRGERA 156
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 69,214,922
Number of extensions: 1870464
Number of successful extensions: 6397
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 6388
Number of HSP's successfully gapped: 30
Length of query: 737
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 627
Effective length of database: 15,207,544
Effective search space: 9535130088
Effective search space used: 9535130088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000730
(2213 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004754.1| integrin beta-1-binding protein 1 isoform 1 [Ho... 303 4e-82
Alignment gi|NP_002098.1| histone H3.3 [Homo sapiens]. 265 2e-70
Alignment gi|NP_005315.1| histone H3.3 [Homo sapiens]. 265 2e-70
Alignment gi|NP_001005464.1| histone H3.2 [Homo sapiens]. 258 1e-68
Alignment gi|NP_066403.2| histone H3.2 [Homo sapiens]. 258 1e-68
Alignment gi|NP_001116847.1| histone H3.2 [Homo sapiens]. 258 1e-68
Alignment gi|NP_003521.2| histone cluster 1, H3d [Homo sapiens]. 256 5e-68
Alignment gi|NP_066298.1| histone H3.1 [Homo sapiens]. 256 5e-68
Alignment gi|NP_003527.1| histone H3.1 [Homo sapiens]. 256 5e-68
Alignment gi|NP_003528.1| histone H3.1 [Homo sapiens]. 256 5e-68
>ref|NP_004754.1| integrin beta-1-binding protein 1 isoform 1 [Homo sapiens].
Length = 200
Score = 303 bits (776), Expect = 4e-82
Identities = 154/171 (90%), Positives = 157/171 (91%)
Frame = +2
Query: 842 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 1021
LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGK LEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKGLEGPLDLI 89
Query: 1022 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 1201
NYIDVAQQDGKLPFVP EEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLG 149
Query: 1202 XXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 1354
TTDAS+EEYSLWVYQC+SLEQAQAICKVL+TAFDSVLTSEKP
Sbjct: 150 AGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKP 200
>ref|NP_002098.1| histone H3.3 [Homo sapiens].
Length = 136
Score = 265 bits (676), Expect = 2e-70
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_005315.1| histone H3.3 [Homo sapiens].
Length = 136
Score = 265 bits (676), Expect = 2e-70
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_001005464.1| histone H3.2 [Homo sapiens].
Length = 136
Score = 258 bits (660), Expect = 1e-68
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_066403.2| histone H3.2 [Homo sapiens].
Length = 136
Score = 258 bits (660), Expect = 1e-68
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_001116847.1| histone H3.2 [Homo sapiens].
Length = 136
Score = 258 bits (660), Expect = 1e-68
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_003521.2| histone cluster 1, H3d [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 5e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_066298.1| histone H3.1 [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 5e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_003527.1| histone H3.1 [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 5e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_003528.1| histone H3.1 [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 5e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 67,714,163
Number of extensions: 1797943
Number of successful extensions: 5944
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 5935
Number of HSP's successfully gapped: 21
Length of query: 737
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 627
Effective length of database: 14,671,124
Effective search space: 9198794748
Effective search space used: 9198794748
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000730
(2213 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032429.1| integrin beta-1-binding protein 1 [Mus musculus]. 289 7e-78
Alignment gi|NP_032237.1| histone H3.3 [Mus musculus]. 265 1e-70
Alignment gi|NP_032236.1| histone H3.3 [Mus musculus]. 265 1e-70
Alignment gi|XP_003085943.1| PREDICTED: histone H3.3-like [Mus musculus]. 263 3e-70
Alignment gi|XP_001477409.1| PREDICTED: histone H3.3-like isoform 1 [Mus ... 261 2e-69
Alignment gi|XP_894986.1| PREDICTED: histone H3.3-like [Mus musculus]. 260 3e-69
Alignment gi|XP_003086287.1| PREDICTED: histone H3.3-like [Mus musculus]. 259 5e-69
Alignment gi|NP_473386.1| histone H3.2 [Mus musculus]. 258 1e-68
Alignment gi|NP_038576.1| histone H3.2 [Mus musculus]. 258 1e-68
Alignment gi|NP_835587.1| histone H3.2 [Mus musculus]. 258 1e-68
>ref|NP_032429.1| integrin beta-1-binding protein 1 [Mus musculus].
Length = 200
Score = 289 bits (739), Expect = 7e-78
Identities = 146/170 (85%), Positives = 155/170 (91%)
Frame = +2
Query: 842 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 1021
LGGLSRSSTVASLDTDSTKSSGQSN+N DTCAEFRIKYVGAIEKL +SEGKSLEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNSNLDTCAEFRIKYVGAIEKLAVSEGKSLEGPLDLI 89
Query: 1022 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 1201
NYIDVAQQDGKLPFVPLEEEFI+GVSKYGIKVST+DQ+ VLHRHALYLIIRMVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPLEEEFILGVSKYGIKVSTTDQHGVLHRHALYLIIRMVCYDDGLG 149
Query: 1202 XXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEK 1351
TTDAS+EEYSLWVYQC+SLEQAQAICKVL+TAFDSVLTS+K
Sbjct: 150 AGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSDK 199
>ref|NP_032237.1| histone H3.3 [Mus musculus].
Length = 136
Score = 265 bits (676), Expect = 1e-70
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_032236.1| histone H3.3 [Mus musculus].
Length = 136
Score = 265 bits (676), Expect = 1e-70
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003085943.1| PREDICTED: histone H3.3-like [Mus musculus].
Length = 136
Score = 263 bits (673), Expect = 3e-70
Identities = 135/136 (99%), Positives = 136/136 (100%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQK+TE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKATE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_001477409.1| PREDICTED: histone H3.3-like isoform 1 [Mus musculus].
Length = 136
Score = 261 bits (667), Expect = 2e-69
Identities = 134/136 (98%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAPS GGVKKPHRYRPGTVALREIRRYQK+TE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSIGGVKKPHRYRPGTVALREIRRYQKATE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_894986.1| PREDICTED: histone H3.3-like [Mus musculus].
Length = 136
Score = 260 bits (665), Expect = 3e-69
Identities = 134/136 (98%), Positives = 134/136 (98%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MA TKQTARKSTGGKAPRKQLATKA RKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MALTKQTARKSTGGKAPRKQLATKATRKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003086287.1| PREDICTED: histone H3.3-like [Mus musculus].
Length = 136
Score = 259 bits (663), Expect = 5e-69
Identities = 134/136 (98%), Positives = 134/136 (98%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MA TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MALTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLV EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVXEIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_473386.1| histone H3.2 [Mus musculus].
Length = 136
Score = 258 bits (660), Expect = 1e-68
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_038576.1| histone H3.2 [Mus musculus].
Length = 136
Score = 258 bits (660), Expect = 1e-68
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_835587.1| histone H3.2 [Mus musculus].
Length = 136
Score = 258 bits (660), Expect = 1e-68
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,475,194
Number of extensions: 1526362
Number of successful extensions: 4744
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 4736
Number of HSP's successfully gapped: 31
Length of query: 737
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 628
Effective length of database: 12,343,635
Effective search space: 7751802780
Effective search space used: 7751802780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000730
(2213 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354976.1| PREDICTED: integrin beta-1-binding protein 1... 311 1e-84
Alignment gi|XP_003354975.1| PREDICTED: integrin beta-1-binding protein 1... 311 1e-84
Alignment gi|XP_003354978.1| PREDICTED: integrin beta-1-binding protein 1... 277 2e-74
Alignment gi|NP_999095.1| histone H3.3 [Sus scrofa]. 265 1e-70
Alignment gi|XP_003131242.1| PREDICTED: histone H3.3-like [Sus scrofa]. 265 1e-70
Alignment gi|XP_003355255.1| PREDICTED: histone H3.2-like [Sus scrofa]. 258 7e-69
Alignment gi|XP_003125833.1| PREDICTED: histone H3.2 [Sus scrofa]. 258 7e-69
Alignment gi|XP_003356567.1| PREDICTED: hypothetical protein LOC100627410... 258 1e-68
Alignment gi|XP_003128260.1| PREDICTED: histone H3.1-like [Sus scrofa]. 256 3e-68
Alignment gi|XP_003356602.1| PREDICTED: histone H3.1-like [Sus scrofa]. 256 3e-68
>ref|XP_003354976.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
Length = 200
Score = 311 bits (796), Expect = 1e-84
Identities = 158/171 (92%), Positives = 159/171 (92%)
Frame = +2
Query: 842 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 1021
LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89
Query: 1022 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 1201
NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLII+MVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIQMVCYDDGLG 149
Query: 1202 XXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 1354
TTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP
Sbjct: 150 AGKSLLALKTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 200
>ref|XP_003354975.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
Length = 200
Score = 311 bits (796), Expect = 1e-84
Identities = 158/171 (92%), Positives = 159/171 (92%)
Frame = +2
Query: 842 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 1021
LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89
Query: 1022 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 1201
NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLII+MVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIQMVCYDDGLG 149
Query: 1202 XXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 1354
TTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP
Sbjct: 150 AGKSLLALKTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 200
>ref|XP_003354978.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
Length = 187
Score = 277 bits (709), Expect = 2e-74
Identities = 146/171 (85%), Positives = 146/171 (85%)
Frame = +2
Query: 842 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 1021
LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89
Query: 1022 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 1201
NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY MVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY-------------MVCYDDGLG 136
Query: 1202 XXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 1354
TTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP
Sbjct: 137 AGKSLLALKTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 187
>ref|NP_999095.1| histone H3.3 [Sus scrofa].
Length = 136
Score = 265 bits (676), Expect = 1e-70
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003131242.1| PREDICTED: histone H3.3-like [Sus scrofa].
Length = 136
Score = 265 bits (676), Expect = 1e-70
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003355255.1| PREDICTED: histone H3.2-like [Sus scrofa].
Length = 136
Score = 258 bits (660), Expect = 7e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003125833.1| PREDICTED: histone H3.2 [Sus scrofa].
Length = 136
Score = 258 bits (660), Expect = 7e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003356567.1| PREDICTED: hypothetical protein LOC100627410 [Sus scrofa].
Length = 282
Score = 258 bits (659), Expect = 1e-68
Identities = 133/136 (97%), Positives = 134/136 (98%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
+ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 147 VARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 206
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 207 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 266
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLA IRGERA
Sbjct: 267 MPKDIQLAHCIRGERA 282
>ref|XP_003128260.1| PREDICTED: histone H3.1-like [Sus scrofa].
Length = 136
Score = 256 bits (655), Expect = 3e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003356602.1| PREDICTED: histone H3.1-like [Sus scrofa].
Length = 136
Score = 256 bits (655), Expect = 3e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 133 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 312
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 313 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 492
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 493 MPKDIQLARRIRGERA 540
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,586,918
Number of extensions: 2021824
Number of successful extensions: 3822
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3816
Number of HSP's successfully gapped: 22
Length of query: 737
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 631
Effective length of database: 8,704,850
Effective search space: 5492760350
Effective search space used: 5492760350
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000730
(2213 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1025 0.0
Sscrofa_Chr12 400 e-108
Sscrofa_Chr07 184 1e-43
Sscrofa_Chr04 137 3e-29
Sscrofa_Chr15 60 5e-06
>Sscrofa_Chr03
|| Length = 144787322
Score = 1025 bits (517), Expect = 0.0
Identities = 517/517 (100%)
Strand = Plus / Plus
Query: 1285 ggaacaggcacaagccatctgcaaagttttagccaccgcttttgactctgtgctgacatc 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135294981 ggaacaggcacaagccatctgcaaagttttagccaccgcttttgactctgtgctgacatc 135295040
Query: 1345 tgagaaaccctgacttctgcaacccagggacgtcaccgtcacacgcaagttccgcttttt 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295041 tgagaaaccctgacttctgcaacccagggacgtcaccgtcacacgcaagttccgcttttt 135295100
Query: 1405 ctcagcagttgtttgccgtcttgagcgctgcccttttacagaaattcccatgatcccctg 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295101 ctcagcagttgtttgccgtcttgagcgctgcccttttacagaaattcccatgatcccctg 135295160
Query: 1465 ctctagactgaaggaaatgcgatgtgtaaaatctcagccgtttgtctattaaaacgtgtc 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295161 ctctagactgaaggaaatgcgatgtgtaaaatctcagccgtttgtctattaaaacgtgtc 135295220
Query: 1525 ttacaacagtgagttaacgctcgacgaagtgccctgtctcctgggactgaaaaaagaaac 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295221 ttacaacagtgagttaacgctcgacgaagtgccctgtctcctgggactgaaaaaagaaac 135295280
Query: 1585 gtcgcctgttgcttttaaacacagatgagcttaataagctttgtgcggcacagaagtgca 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295281 gtcgcctgttgcttttaaacacagatgagcttaataagctttgtgcggcacagaagtgca 135295340
Query: 1645 cccagcgagtgaggcgtggaggacctgcgaggacggggccgtctgtgctgcagcgctggc 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295341 cccagcgagtgaggcgtggaggacctgcgaggacggggccgtctgtgctgcagcgctggc 135295400
Query: 1705 ccgtggtgcgctctggccgggggacccggtcatgctggtctgaaacagtgacaccgccaa 1764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295401 ccgtggtgcgctctggccgggggacccggtcatgctggtctgaaacagtgacaccgccaa 135295460
Query: 1765 ctcaagacacagccagcctttgaaagcgtgttgtcgt 1801
|||||||||||||||||||||||||||||||||||||
Sbjct: 135295461 ctcaagacacagccagcctttgaaagcgtgttgtcgt 135295497
Score = 291 bits (147), Expect = 8e-76
Identities = 150/151 (99%)
Strand = Plus / Plus
Query: 1136 gacgttttgcacaggcacgcgctgtatttaattatccggatggtgtgctatgacgacggc 1195
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 135294438 gacgttttgcacaggcacgcgctgtatttaattatccagatggtgtgctatgacgacggc 135294497
Query: 1196 ctgggggcggggaaaagcttactggctctgaagaccacagatgccagccacgaagaatac 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135294498 ctgggggcggggaaaagcttactggctctgaagaccacagatgccagccacgaagaatac 135294557
Query: 1256 agcctgtgggtttaccagtgcagcagcctgg 1286
|||||||||||||||||||||||||||||||
Sbjct: 135294558 agcctgtgggtttaccagtgcagcagcctgg 135294588
Score = 276 bits (139), Expect = 5e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 904 aggacaaagcaacaataattcagatacctgtgcagaatttcgaataaaatatgttggtgc 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135292875 aggacaaagcaacaataattcagatacctgtgcagaatttcgaataaaatatgttggtgc 135292934
Query: 964 catcgagaagctgaaactctcggagggaaaaagtctcgaagggccactcgacctgataaa 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135292935 catcgagaagctgaaactctcggagggaaaaagtctcgaagggccactcgacctgataaa 135292994
Query: 1024 ttatatagatgttgcccag 1042
|||||||||||||||||||
Sbjct: 135292995 ttatatagatgttgcccag 135293013
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 721 aggggagcgcctccgggtcaagctatggtggaagatgtttcggaaaggcaaaaagcgcca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135287194 aggggagcgcctccgggtcaagctatggtggaagatgtttcggaaaggcaaaaagcgcca 135287253
Query: 781 cagtagcagcagttcccagagcagtgaaatcagtaccaagagcaag 826
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135287254 cagtagcagcagttcccagagcagtgaaatcagtaccaagagcaag 135287299
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1041 agcaagatggaaagttgcctttcgttcctctggaggaagaatttatcatgggagtttcca 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135293523 agcaagatggaaagttgcctttcgttcctctggaggaagaatttatcatgggagtttcca 135293582
Query: 1101 agtatgggataaaagtatccacatcggatcagtatg 1136
||||||||||||||||||||||||||||||||||||
Sbjct: 135293583 agtatgggataaaagtatccacatcggatcagtatg 135293618
Score = 182 bits (92), Expect = 5e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 632 gagccggcgctggaatcggaacggaggtggctgctgtggcgccggctcccccgggagtgg 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135174283 gagccggcgctggaatcggaacggaggtggctgctgtggcgccggctcccccgggagtgg 135174342
Query: 692 gtgtctgaccccgaccgcaggcggcggtgagg 723
||||||||||||||||||||||||||||||||
Sbjct: 135174343 gtgtctgaccccgaccgcaggcggcggtgagg 135174374
Score = 163 bits (82), Expect = 5e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 825 agtcggtggactccagccttggggggctctcccggtccagcactgtggcaagcctcgata 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135290997 agtcggtggactccagccttggggggctctcccggtccagcactgtggcaagcctcgata 135291056
Query: 885 cagattctaccaagagctcagg 906
||||||||||||||||||||||
Sbjct: 135291057 cagattctaccaagagctcagg 135291078
Score = 95.6 bits (48), Expect = 1e-16
Identities = 202/252 (80%), Gaps = 1/252 (0%)
Strand = Plus / Plus
Query: 223 ccctctaccggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcga 282
|||||||| || |||||||| ||||||||||| |||||||| || ||||| || || ||
Sbjct: 106880436 ccctctactggaggggtgaagaaacctcatcgttacaggcctggtaccgtggcactccgt 106880495
Query: 283 gaaatccgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagag- 341
||||| | ||||| || |||||||| || |||||||| || ||||| ||||||||| |
Sbjct: 106880496 gaaattagacgttatcagaagtccactgaacttctgattcgcaagcttcccttccagcgt 106880555
Query: 342 gttggtgagggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccat 401
|||||| |||| || || ||||| |||||||| || || | |||||||| || || ||
Sbjct: 106880556 cttggtgcgggaaattgctcaggacttcaaaacagatatgcgcttccagagtgcagctat 106880615
Query: 402 tggtgcgcttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatct 461
|||||| | |||||||| ||||| || || ||||| || | |||||||| ||||| ||
Sbjct: 106880616 tggtgctttgcaggaggcaagtgaggcctatctggttggcctttttgaagacaccaacct 106880675
Query: 462 gtgtgccatcca 473
|||||| |||||
Sbjct: 106880676 gtgtgctatcca 106880687
>Sscrofa_Chr12
|| Length = 63588571
Score = 400 bits (202), Expect = e-108
Identities = 202/202 (100%)
Strand = Plus / Plus
Query: 412 caggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgccatc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579820 caggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgccatc 5579879
Query: 472 cacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccggatacgggga 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579880 cacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccggatacgggga 5579939
Query: 532 gagagagcttaagtgaaggcagtttttatggtgttttgtagtaaattctgtaaaatactt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579940 gagagagcttaagtgaaggcagtttttatggtgttttgtagtaaattctgtaaaatactt 5579999
Query: 592 tggtttaatttgtgactttttt 613
||||||||||||||||||||||
Sbjct: 5580000 tggtttaatttgtgactttttt 5580021
Score = 317 bits (160), Expect = 1e-83
Identities = 163/164 (99%)
Strand = Plus / Plus
Query: 252 tcgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacgga 311
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579573 tcgctccaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacgga 5579632
Query: 312 gcttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaa 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579633 gcttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaa 5579692
Query: 372 aactgacttgaggttccagagcgccgccattggtgcgcttcagg 415
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579693 aactgacttgaggttccagagcgccgccattggtgcgcttcagg 5579736
Score = 278 bits (140), Expect = 1e-71
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 122 ggtaaaagaaaatggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579323 ggtaaaagaaaatggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgc 5579382
Query: 182 cccgcaaacagctggccactaaagctgccaggaaaagcgctccctctaccggcggggtga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579383 cccgcaaacagctggccactaaagctgccaggaaaagcgctccctctaccggcggggtga 5579442
Query: 242 aaaaacctcatcgctacagg 261
||||||||||||||||||||
Sbjct: 5579443 aaaaacctcatcgctacagg 5579462
Score = 242 bits (122), Expect = 7e-61
Identities = 125/126 (99%)
Strand = Plus / Plus
Query: 1 gcgcagagcggtttggtcgttcgttggagttgcttcttgctttggttcggcgactgcggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578732 gcgcagagcggtttggtcgttcgttggagttgcttcttgctttggttcggcgactgcggc 5578791
Query: 61 tcttcattgggcggcgggagcggtacggcggtgggggaagcggcctcagacttcgctgtt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5578792 tcttcattgggcggcgggagcggcacggcggtgggggaagcggcctcagacttcgctgtt 5578851
Query: 121 gggtaa 126
||||||
Sbjct: 5578852 gggtaa 5578857
>Sscrofa_Chr07
|| Length = 134764511
Score = 184 bits (93), Expect = 1e-43
Identities = 315/389 (80%)
Strand = Plus / Minus
Query: 133 atggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgccccgcaaacag 192
||||| || ||||||||||| ||||| |||||||| || || || ||||| ||||| |||
Sbjct: 23089448 atggctcgtaccaagcagacagctcgcaagtccaccggcggcaaggcgccgcgcaagcag 23089389
Query: 193 ctggccactaaagctgccaggaaaagcgctccctctaccggcggggtgaaaaaacctcat 252
|||||||| || || ||| | || ||||| ||| | |||||||| ||||| || || ||
Sbjct: 23089388 ctggccaccaaggcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgcac 23089329
Query: 253 cgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacggag 312
|||||| ||||||| || || || || || || ||||| || ||||| ||||||||||||
Sbjct: 23089328 cgctactggcccggcacggtggccctgcgcgagatccggcgctaccagaagtccacggag 23089269
Query: 313 cttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaa 372
|| |||||||| |||||||| |||||| || ||||| | |||||||| ||||| |||||
Sbjct: 23089268 ctgctgatccgcaagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaag 23089209
Query: 373 actgacttgaggttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgtac 432
|| ||| || | ||||||||| | ||| | ||||| |||||||| | || || |||
Sbjct: 23089208 accgacctgcgcttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggcctac 23089149
Query: 433 ctggtgggtttatttgaagataccaatctgtgtgccatccacgctaagagagtcaccatc 492
|||||||| | || || || ||||| ||||||||||||||||| ||| | |||||||||
Sbjct: 23089148 ctggtggggctcttcgaggacaccaacctgtgtgccatccacgccaagcgcgtcaccatc 23089089
Query: 493 atgcccaaagacatccagttggctcgccg 521
|||||||| ||||||||| ||||||||||
Sbjct: 23089088 atgcccaaggacatccagctggctcgccg 23089060
Score = 176 bits (89), Expect = 3e-41
Identities = 314/389 (80%)
Strand = Plus / Minus
Query: 133 atggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgccccgcaaacag 192
||||| || ||||||||||| ||||| |||||||| || || || ||||| ||||| |||
Sbjct: 22080010 atggctcgtaccaagcagaccgctcgcaagtccaccggcggcaaggcgccgcgcaagcag 22079951
Query: 193 ctggccactaaagctgccaggaaaagcgctccctctaccggcggggtgaaaaaacctcat 252
|||||||| || || ||| | || ||||| ||| | |||||||| ||||| || || ||
Sbjct: 22079950 ctggccaccaaggcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgcac 22079891
Query: 253 cgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacggag 312
|||||| ||||||| || || || || || || ||||| || ||||| ||||||||||||
Sbjct: 22079890 cgctaccggcccggcacggtggccctgcgcgagatccggcgctaccagaagtccacggag 22079831
Query: 313 cttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaa 372
|| |||||||| |||||||| |||||| || ||||| | |||||||| ||||| |||||
Sbjct: 22079830 ctgctgatccgcaagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaag 22079771
Query: 373 actgacttgaggttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgtac 432
|| ||| || | ||||||||| | ||| | ||||| |||||||| | || || |||
Sbjct: 22079770 acggacctgcgcttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggcctac 22079711
Query: 433 ctggtgggtttatttgaagataccaatctgtgtgccatccacgctaagagagtcaccatc 492
|||||||| | || || || ||||| ||||| ||||||||||| ||| | |||||||||
Sbjct: 22079710 ctggtggggctcttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccatc 22079651
Query: 493 atgcccaaagacatccagttggctcgccg 521
|||||||| ||||||||| ||||||||||
Sbjct: 22079650 atgcccaaggacatccagctggctcgccg 22079622
Score = 168 bits (85), Expect = 8e-39
Identities = 304/377 (80%)
Strand = Plus / Minus
Query: 145 aagcagactgctcgtaagtccacgggtgggaaagcgccccgcaaacagctggccactaaa 204
|||||||| ||||| |||||||| || || || ||||| ||||| ||||||||||| ||
Sbjct: 23187070 aagcagaccgctcgcaagtccaccggcggcaaggcgccgcgcaagcagctggccaccaag 23187011
Query: 205 gctgccaggaaaagcgctccctctaccggcggggtgaaaaaacctcatcgctacaggccc 264
|| ||| | || ||||| ||| | |||||||| ||||| || || || |||||| |||||
Sbjct: 23187010 gcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgcaccgctaccggccc 23186951
Query: 265 gggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacggagcttctgatccgg 324
|| || || || || || || ||||| || ||||| |||||||||||||| ||||||||
Sbjct: 23186950 ggcacggtggccctgcgcgagatccggcgctaccagaagtccacggagctgctgatccgc 23186891
Query: 325 aagctgcccttccagaggttggtgagggagatcgcccaggatttcaaaactgacttgagg 384
|||||||| |||||| || ||||| | |||||||| ||||| ||||| || ||| || |
Sbjct: 23186890 aagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaagacggacctgcgc 23186831
Query: 385 ttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgtacctggtgggttta 444
||||||||| | ||| | ||||| |||||||| | || || ||||||||||| |
Sbjct: 23186830 ttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggcctacctggtggggctc 23186771
Query: 445 tttgaagataccaatctgtgtgccatccacgctaagagagtcaccatcatgcccaaagac 504
|| || || ||||| ||||| ||||||||||| ||| | ||||||||||||||||| |||
Sbjct: 23186770 ttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccatcatgcccaaggac 23186711
Query: 505 atccagttggctcgccg 521
|||||| ||||||||||
Sbjct: 23186710 atccagctggctcgccg 23186694
Score = 167 bits (84), Expect = 3e-38
Identities = 331/412 (80%), Gaps = 1/412 (0%)
Strand = Plus / Minus
Query: 133 atggcccgaaccaagcagactgctcgtaagtccacgggtgggaaag-cgccccgcaaaca 191
||||| || ||||||||||| ||||| |||||||| || || || | |||| ||||| ||
Sbjct: 23179687 atggctcgtaccaagcagaccgctcgcaagtccaccggcggcaagggcgccgcgcaagca 23179628
Query: 192 gctggccactaaagctgccaggaaaagcgctccctctaccggcggggtgaaaaaacctca 251
||||||||| || || ||| | || ||||| ||| | |||||||| ||||| || || ||
Sbjct: 23179627 gctggccaccaaggcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgca 23179568
Query: 252 tcgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacgga 311
|||||| ||||||| || || || || || || ||||| || ||||| |||||||||||
Sbjct: 23179567 ccgctaccggcccggcacggtggccctgcgcgagatccggcgctaccagaagtccacgga 23179508
Query: 312 gcttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaa 371
||| |||||||| |||||||| |||||| || ||||| | |||||||| ||||| |||||
Sbjct: 23179507 gctgctgatccgcaagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaa 23179448
Query: 372 aactgacttgaggttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgta 431
|| ||| || | ||||||||| | ||| | ||||| |||||||| | || || ||
Sbjct: 23179447 gacggacctgcgcttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggccta 23179388
Query: 432 cctggtgggtttatttgaagataccaatctgtgtgccatccacgctaagagagtcaccat 491
||||||||| | || || || ||||| ||||| ||||||||||| ||| | ||||||||
Sbjct: 23179387 cctggtggggctcttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccat 23179328
Query: 492 catgcccaaagacatccagttggctcgccggatacggggagagagagcttaa 543
||||||||| ||||||||| |||||||||| || || || || |||||||||
Sbjct: 23179327 catgcccaaggacatccagctggctcgccgcatccgcggggaaagagcttaa 23179276
Score = 103 bits (52), Expect = 4e-19
Identities = 229/288 (79%)
Strand = Plus / Plus
Query: 223 ccctctaccggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcga 282
|||||||| || |||||||| ||||||||||| |||||||| || ||||| || || ||
Sbjct: 5756374 ccctctactggaggggtgaagaaacctcatcgttacaggcctggtaccgtggcactccgt 5756433
Query: 283 gaaatccgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagagg 342
||||| | ||||| || |||||||| || |||||||| || ||||| ||||||||| |
Sbjct: 5756434 gaaattagacgttatcagaagtccactgaacttctgattcgcaagcttcccttccagcgt 5756493
Query: 343 ttggtgagggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccatt 402
||||| |||| || || ||||| |||||||| || || | |||||||| || || |||
Sbjct: 5756494 ctggtgcgggaaattgctcaggacttcaaaacagatctgcgcttccagagtgcagctatt 5756553
Query: 403 ggtgcgcttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctg 462
||||| | |||||||| ||||| || || ||||| || | |||||||| ||||| |||
Sbjct: 5756554 ggtgctttgcaggaggcaagtgaggcctatctggttggcctttttgaagacaccaacctg 5756613
Query: 463 tgtgccatccacgctaagagagtcaccatcatgcccaaagacatccag 510
||||| ||||| || || | || || || ||||| ||||||||||||
Sbjct: 5756614 tgtgctatccatgccaaacgtgtaacaattatgccaaaagacatccag 5756661
>Sscrofa_Chr04
|| Length = 143465943
Score = 137 bits (69), Expect = 3e-29
Identities = 237/293 (80%)
Strand = Plus / Minus
Query: 229 accggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcgagaaatc 288
|||||||| ||||| || || || |||||| |||| || ||||| || || || || |||
Sbjct: 108522382 accggcggcgtgaagaagccccaccgctaccggccgggcaccgtggccctgcgggagatc 108522323
Query: 289 cgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagaggttggtg 348
|| || ||||| ||||| || ||||| |||||||| ||||||||||||||| | |||||
Sbjct: 108522322 cggcgctaccagaagtcgaccgagctgctgatccgcaagctgcccttccagcgcctggtg 108522263
Query: 349 agggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccattggtgcg 408
| |||||||| ||||| ||||| || ||| || | ||||||||| | ||| | |||
Sbjct: 108522262 cgcgagatcgcgcaggacttcaagacggacctgcgcttccagagctcggccgtgatggcg 108522203
Query: 409 cttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgcc 468
|| |||||||| || || || ||||||||||| | |||||||| || || |||||||||
Sbjct: 108522202 ctgcaggaggcgagcgaggcctacctggtggggctgtttgaagacacgaacctgtgtgcc 108522143
Query: 469 atccacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccg 521
|||||||| ||| | || |||||||||||||||||||||||| |||| |||||
Sbjct: 108522142 atccacgccaagcgcgtgaccatcatgcccaaagacatccagctggcccgccg 108522090
Score = 137 bits (69), Expect = 3e-29
Identities = 237/293 (80%)
Strand = Plus / Minus
Query: 229 accggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcgagaaatc 288
|||||||| ||||| || || || |||||| |||| || ||||| || || || || |||
Sbjct: 108799627 accggcggcgtgaagaagccccaccgctaccggccgggcaccgtggccctgcgggagatc 108799568
Query: 289 cgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagaggttggtg 348
|| || ||||| ||||| || ||||| |||||||| ||||||||||||||| | |||||
Sbjct: 108799567 cggcgctaccagaagtcgaccgagctgctgatccgcaagctgcccttccagcgcctggtg 108799508
Query: 349 agggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccattggtgcg 408
| |||||||| ||||| ||||| || ||| || | ||||||||| | ||| | |||
Sbjct: 108799507 cgcgagatcgcgcaggacttcaagacggacctgcgcttccagagctcggccgtgatggcg 108799448
Query: 409 cttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgcc 468
|| |||||||| || || || ||||||||||| | |||||||| || || |||||||||
Sbjct: 108799447 ctgcaggaggcgagcgaggcctacctggtggggctgtttgaagacacgaacctgtgtgcc 108799388
Query: 469 atccacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccg 521
|||||||| ||| | || |||||||||||||||||||||||| |||| |||||
Sbjct: 108799387 atccacgccaagcgcgtgaccatcatgcccaaagacatccagctggcccgccg 108799335
Score = 137 bits (69), Expect = 3e-29
Identities = 237/293 (80%)
Strand = Plus / Plus
Query: 229 accggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcgagaaatc 288
|||||||| ||||| || || || |||||| |||| || ||||| || || || || |||
Sbjct: 108826607 accggcggcgtgaagaagccccaccgctaccggccgggcaccgtggccctgcgggagatc 108826666
Query: 289 cgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagaggttggtg 348
|| || ||||| ||||| || ||||| |||||||| ||||||||||||||| | |||||
Sbjct: 108826667 cggcgctaccagaagtcgaccgagctgctgatccgcaagctgcccttccagcgcctggtg 108826726
Query: 349 agggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccattggtgcg 408
| |||||||| ||||| ||||| || ||| || | ||||||||| | ||| | |||
Sbjct: 108826727 cgcgagatcgcgcaggacttcaagacggacctgcgcttccagagctcggccgtgatggcg 108826786
Query: 409 cttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgcc 468
|| |||||||| || || || ||||||||||| | |||||||| || || |||||||||
Sbjct: 108826787 ctgcaggaggcgagcgaggcctacctggtggggctgtttgaagacacgaacctgtgtgcc 108826846
Query: 469 atccacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccg 521
|||||||| ||| | || |||||||||||||||||||||||| |||| |||||
Sbjct: 108826847 atccacgccaagcgcgtgaccatcatgcccaaagacatccagctggcccgccg 108826899
>Sscrofa_Chr15
|| Length = 157681621
Score = 60.0 bits (30), Expect = 5e-06
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 318 gatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaaactga 377
||||| ||||| ||| ||||||||||||| ||||||| || |||||| |||||||||||
Sbjct: 153929629 gatccagaagcggcctttccagaggttggggagggagttcacccagggcttcaaaactga 153929570
Query: 378 ct 379
||
Sbjct: 153929569 ct 153929568
Score = 60.0 bits (30), Expect = 5e-06
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 318 gatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaaactga 377
||||| ||||| ||| ||||||||||||| ||||||| || |||||| |||||||||||
Sbjct: 154371033 gatccagaagcggcctttccagaggttggggagggagttcacccagggcttcaaaactga 154371092
Query: 378 ct 379
||
Sbjct: 154371093 ct 154371094
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,017,011
Number of extensions: 270
Number of successful extensions: 270
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 29
Length of query: 2213
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2191
Effective length of database: 2,808,408,574
Effective search space: 6153223185634
Effective search space used: 6153223185634
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)