Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000741
(1014 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002695827.1| PREDICTED: solute carrier family 16, member ... 226 2e-59
Alignment gi|XP_001790326.1| PREDICTED: solute carrier family 16, member ... 226 2e-59
Alignment gi|NP_001069600.1| monocarboxylate transporter 13 [Bos taurus]. 110 2e-24
Alignment gi|NP_001103450.1| monocarboxylate transporter 4 [Bos taurus]. 86 4e-17
Alignment gi|XP_002687978.1| PREDICTED: solute carrier family 16, member ... 77 2e-14
Alignment gi|XP_612876.2| PREDICTED: solute carrier family 16, member 8 (... 77 2e-14
Alignment gi|NP_001069804.1| monocarboxylate transporter 2 [Bos taurus]. 69 7e-12
Alignment gi|XP_002698390.1| PREDICTED: solute carrier family 16, member ... 67 2e-11
Alignment gi|XP_580537.2| PREDICTED: solute carrier family 16, member 3-l... 67 2e-11
Alignment gi|NP_001179116.1| monocarboxylate transporter 14 [Bos taurus]. 61 1e-09
>ref|XP_002695827.1| PREDICTED: solute carrier family 16, member 11-like [Bos taurus].
Length = 447
Score = 226 bits (577), Expect = 2e-59
Identities = 134/281 (47%), Positives = 139/281 (49%)
Frame = +2
Query: 146 MTPKPAGPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEHFDRSAQDTAWXXXXX 325
MTPKP GPPD AE+FDR+AQ+TAW
Sbjct: 1 MTPKPTGPPDGGWGWVVAAAGFAVNGLSYGVLRSLGLAFPDFAEYFDRNAQETAWVSALA 60
Query: 326 XXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXXXXXXXXXXXXXXXXX 505
PVGSALSTRWGARPVVMVGGVLTSLGFVFSAF
Sbjct: 61 LAVQQAASPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFAHSLLHLYLGLGVLAGSGWA 120
Query: 506 XVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXDHFGWRXXXXXXXXXX 685
VFAPALGT+SRYFSRRRVLAVGLAL GNG D+FGWR
Sbjct: 121 LVFAPALGTVSRYFSRRRVLAVGLALMGNGASSLLLAPALQLLLDNFGWRGALLLLGAVT 180
Query: 686 XXXXPCGALLRXXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVH 865
PCGALLR RSPLAALGL LF R FLV LGTALV GYFIPYVH
Sbjct: 181 LHLTPCGALLRPLALPGDPLALPRSPLAALGLGLFRRPAFLVLTLGTALVGVGYFIPYVH 240
Query: 866 LAPHALDXXXXXXXXXXXXXXXXXXXXXXPLLNGWLPDQGW 988
LAPHALD L GWL DQGW
Sbjct: 241 LAPHALDRGLGGYGAALVVAAAAVGDIGARLPCGWLADQGW 281
>ref|XP_001790326.1| PREDICTED: solute carrier family 16, member 11-like [Bos taurus].
Length = 447
Score = 226 bits (577), Expect = 2e-59
Identities = 134/281 (47%), Positives = 139/281 (49%)
Frame = +2
Query: 146 MTPKPAGPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEHFDRSAQDTAWXXXXX 325
MTPKP GPPD AE+FDR+AQ+TAW
Sbjct: 1 MTPKPTGPPDGGWGWVVAAAGFAVNGLSYGVLRSLGLAFPDFAEYFDRNAQETAWVSALA 60
Query: 326 XXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXXXXXXXXXXXXXXXXX 505
PVGSALSTRWGARPVVMVGGVLTSLGFVFSAF
Sbjct: 61 LAVQQAASPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFAHSLLHLYLGLGVLAGSGWA 120
Query: 506 XVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXDHFGWRXXXXXXXXXX 685
VFAPALGT+SRYFSRRRVLAVGLAL GNG D+FGWR
Sbjct: 121 LVFAPALGTVSRYFSRRRVLAVGLALMGNGASSLLLAPALQLLLDNFGWRGALLLLGAVT 180
Query: 686 XXXXPCGALLRXXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVH 865
PCGALLR RSPLAALGL LF R FLV LGTALV GYFIPYVH
Sbjct: 181 LHLTPCGALLRPLALPGDPLALPRSPLAALGLGLFRRPAFLVLTLGTALVGVGYFIPYVH 240
Query: 866 LAPHALDXXXXXXXXXXXXXXXXXXXXXXPLLNGWLPDQGW 988
LAPHALD L GWL DQGW
Sbjct: 241 LAPHALDRGLGGYGAALVVAAAAVGDIGARLPCGWLADQGW 281
>ref|NP_001069600.1| monocarboxylate transporter 13 [Bos taurus].
Length = 426
Score = 110 bits (276), Expect = 2e-24
Identities = 74/233 (31%), Positives = 92/233 (39%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F+ A +W PVGSALST++G RP VM GG+LT+LG + ++F
Sbjct: 45 FEEPAARVSWIASIGIAVQQFGSPVGSALSTKFGPRPAVMTGGILTALGMLLASFATSLT 104
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
F P L LSRYFSRRR LA+GLALTG G +
Sbjct: 105 HLYLSIGLLSGSGWALTFTPTLACLSRYFSRRRSLAMGLALTGVGLSSFAFAPLFQWLLN 164
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFAL 820
H+ WR CGALLR P A + L FL + +
Sbjct: 165 HYAWRGALLLVSALSLHLVACGALLRPLSLAEDPVVG--GPGAQI-TSLLRHGPFLRYTV 221
Query: 821 GTALVAGGYFIPYVHLAPHALDXXXXXXXXXXXXXXXXXXXXXXPLLNGWLPD 979
L+ GYFIPYVHL H D + +GWL D
Sbjct: 222 ALTLINTGYFIPYVHLVAHLRDLGWDPLPAAFLLSVAAISDLVGRVASGWLGD 274
>ref|NP_001103450.1| monocarboxylate transporter 4 [Bos taurus].
Length = 461
Score = 86.3 bits (212), Expect = 4e-17
Identities = 57/200 (28%), Positives = 82/200 (41%), Gaps = 4/200 (2%)
Frame = +2
Query: 299 DTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXXXXXXXX 478
DTAW P+ S R+G RPV++ GG+L SLG V ++F
Sbjct: 59 DTAWISSILLAMLYGTGPLCSVCVNRFGCRPVMLAGGLLASLGMVSASFCGSIIQLYLTT 118
Query: 479 XXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXDHFGWRX 658
F P+L L+RYF++RR +A GLA G+ DH+GWR
Sbjct: 119 GVLTGLGLALNFQPSLIMLNRYFNKRRPMANGLAAAGSPVFLCALSPLGQVLQDHYGWRG 178
Query: 659 XXXXXXXXXXXXXPCGALLR----XXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFALGT 826
C AL+R R P L L +F R F+++AL
Sbjct: 179 GFLILGGLLLNCCVCAALMRPLEAPRQSSGSGPAPQRPPRRLLDLSVFRDRGFVIYALAA 238
Query: 827 ALVAGGYFIPYVHLAPHALD 886
+++ G F+P V + +A D
Sbjct: 239 SIMVLGLFVPPVFVVSYAKD 258
>ref|XP_002687978.1| PREDICTED: solute carrier family 16, member 8 (monocarboxylic acid
transporter 3) [Bos taurus].
Length = 497
Score = 77.0 bits (188), Expect = 2e-14
Identities = 60/227 (26%), Positives = 81/227 (35%), Gaps = 25/227 (11%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F DTAW PV S L TR+G RPV++VGG+L S G + ++F
Sbjct: 50 FGAGYSDTAWVSSIMLAMLYGTGPVSSILVTRFGCRPVMLVGGLLASAGMILASFATRLL 109
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
F P+L L YF RRR LA GLA G+ +
Sbjct: 110 ELYLTAGVLTGLGLALNFQPSLIMLGLYFERRRPLANGLAAAGSPVFLSALSPLGQQLLE 169
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLR-------------------------XXXXXXXXX 745
HFGWR CGA++R
Sbjct: 170 HFGWRGGFLLLGGLLLNCCACGAVMRPPPGPGPRPRRDSAGDAPGEAEAHLAGPRVREAP 229
Query: 746 XXXRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALD 886
R+ L + + R F V+A+ L+A G F+P + L +A D
Sbjct: 230 SGGRTRRRLLDVTVCADRAFAVYAVTKFLMALGLFVPAILLVNYAKD 276
>ref|XP_612876.2| PREDICTED: solute carrier family 16, member 8 (monocarboxylic acid
transporter 3) [Bos taurus].
Length = 497
Score = 77.0 bits (188), Expect = 2e-14
Identities = 60/227 (26%), Positives = 81/227 (35%), Gaps = 25/227 (11%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F DTAW PV S L TR+G RPV++VGG+L S G + ++F
Sbjct: 50 FGAGYSDTAWVSSIMLAMLYGTGPVSSILVTRFGCRPVMLVGGLLASAGMILASFATRLL 109
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
F P+L L YF RRR LA GLA G+ +
Sbjct: 110 ELYLTAGVLTGLGLALNFQPSLIMLGLYFERRRPLANGLAAAGSPVFLSALSPLGQQLLE 169
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLR-------------------------XXXXXXXXX 745
HFGWR CGA++R
Sbjct: 170 HFGWRGGFLLLGGLLLNCCACGAVMRPPPGPGPRPRRDSAGDAPGEAEAHLAGPRVREAP 229
Query: 746 XXXRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALD 886
R+ L + + R F V+A+ L+A G F+P + L +A D
Sbjct: 230 SGGRTRRRLLDVTVCADRAFAVYAVTKFLMALGLFVPAILLVNYAKD 276
>ref|NP_001069804.1| monocarboxylate transporter 2 [Bos taurus].
Length = 482
Score = 68.9 bits (167), Expect = 7e-12
Identities = 50/223 (22%), Positives = 82/223 (36%), Gaps = 21/223 (9%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F+ + + AW P+ S L ++G+RPVVMVGG+L LG V +++
Sbjct: 51 FNTTYSEIAWISSTMLAVMYAGGPISSVLVNKYGSRPVVMVGGLLCCLGMVSASYSTNVV 110
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
PAL + +YF ++R +A GLA+ G+ +
Sbjct: 111 ELYFTMGLICGLGLAFNLQPALTIIGKYFYKKRPVANGLAMAGSPVFLSTLAPFNQYLFN 170
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSPLAA---------------- 772
+GW+ G+L+R + +
Sbjct: 171 TYGWKGSFMILGGLLLNCCVAGSLMRPVEPKASTESKNKVGVRETDCSMKKRQKKLSVWE 230
Query: 773 -----LGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALD 886
L LF R FL++ G ++ G+F P + LAP+A D
Sbjct: 231 EINKYLDFSLFKHRGFLIYLSGNVIMFLGFFAPVIFLAPYAKD 273
>ref|XP_002698390.1| PREDICTED: solute carrier family 16, member 3-like [Bos taurus].
Length = 486
Score = 67.0 bits (162), Expect = 2e-11
Identities = 36/147 (24%), Positives = 59/147 (40%)
Frame = +2
Query: 278 HFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXX 457
+F + TAW P+GS +S + + +M+GG+L S G + +F
Sbjct: 49 YFSQDYAQTAWIHSIVDCVTMLCAPLGSVVSNHFSCQVGIMLGGLLASTGLILGSFATSL 108
Query: 458 XXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXX 637
++PA+ + +YFSRR+ LA G++L+G+G
Sbjct: 109 KHLYLTLGVLTGLGFALCYSPAIAMVGKYFSRRKALAYGISLSGSGIGIFILAPVVQLLI 168
Query: 638 DHFGWRXXXXXXXXXXXXXXPCGALLR 718
+ F WR CGAL+R
Sbjct: 169 EQFSWRGALLILGGFVLNLCVCGALMR 195
>ref|XP_580537.2| PREDICTED: solute carrier family 16, member 3-like [Bos taurus].
Length = 486
Score = 67.0 bits (162), Expect = 2e-11
Identities = 36/147 (24%), Positives = 59/147 (40%)
Frame = +2
Query: 278 HFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXX 457
+F + TAW P+GS +S + + +M+GG+L S G + +F
Sbjct: 49 YFSQDYAQTAWIHSIVDCVTMLCAPLGSVVSNHFSCQVGIMLGGLLASTGLILGSFATSL 108
Query: 458 XXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXX 637
++PA+ + +YFSRR+ LA G++L+G+G
Sbjct: 109 KHLYLTLGVLTGLGFALCYSPAIAMVGKYFSRRKALAYGISLSGSGIGIFILAPVVQLLI 168
Query: 638 DHFGWRXXXXXXXXXXXXXXPCGALLR 718
+ F WR CGAL+R
Sbjct: 169 EQFSWRGALLILGGFVLNLCVCGALMR 195
>ref|NP_001179116.1| monocarboxylate transporter 14 [Bos taurus].
Length = 512
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/148 (27%), Positives = 53/148 (35%)
Frame = +2
Query: 275 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 454
E F +S TAW P G R ++GG+L SLG+V SA+
Sbjct: 63 EEFHQSRGLTAWVSSLSMGVTLIVGPFIGLFINTCGCRRTAIIGGLLNSLGWVLSAYAVN 122
Query: 455 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 634
+ PA+ + RYF +RR LA GL+ TG G
Sbjct: 123 VYYLFITFGLAAGFGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYL 182
Query: 635 XDHFGWRXXXXXXXXXXXXXXPCGALLR 718
+GWR CGAL+R
Sbjct: 183 CAEYGWRNAMFIQGAVSLNLCVCGALMR 210
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,857,958
Number of extensions: 945428
Number of successful extensions: 6644
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 6565
Number of HSP's successfully gapped: 19
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000741
(1014 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546578.2| PREDICTED: similar to solute carrier family 16,... 260 2e-69
Alignment gi|XP_849442.1| PREDICTED: similar to solute carrier family 16 ... 101 1e-21
Alignment gi|XP_540498.2| PREDICTED: similar to Monocarboxylate transport... 84 2e-16
Alignment gi|XP_538259.1| PREDICTED: similar to Monocarboxylate transport... 69 5e-12
Alignment gi|XP_548022.2| PREDICTED: similar to solute carrier family 16,... 67 3e-11
Alignment gi|XP_543918.1| PREDICTED: similar to solute carrier family 16 ... 66 6e-11
Alignment gi|XP_540427.2| PREDICTED: similar to solute carrier family 16,... 63 4e-10
Alignment gi|XP_852708.1| PREDICTED: similar to solute carrier family 16,... 62 7e-10
Alignment gi|XP_543280.2| PREDICTED: similar to solute carrier family 16 ... 61 2e-09
Alignment gi|XP_533065.2| PREDICTED: similar to Monocarboxylate transport... 61 2e-09
>ref|XP_546578.2| PREDICTED: similar to solute carrier family 16, member 11 [Canis
familiaris].
Length = 571
Score = 260 bits (664), Expect = 2e-69
Identities = 150/313 (47%), Positives = 156/313 (49%)
Frame = +2
Query: 50 SPLGPRPPGKRGENRXXXXXXXXXXXXXXXXXMTPKPAGPPDXXXXXXXXXXXXXXXXXX 229
SPLGPRP KRGE+ MTPKPAGPPD
Sbjct: 88 SPLGPRPRSKRGEHLARAAPRPSPPPPPGETAMTPKPAGPPDGGWGWVVAAAAFAVNGLS 147
Query: 230 XXXXXXXXXXXXXXAEHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGG 409
AEHFDR+ QDTAW PVGSALSTRWGARPVVMVGG
Sbjct: 148 YGLLRSLGLALPDLAEHFDRNTQDTAWVSALALAVQQAASPVGSALSTRWGARPVVMVGG 207
Query: 410 VLTSLGFVFSAFXXXXXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTG 589
VLTSLGFVFSAF VFAPALGTLSRYFSRRRVLAVGLALTG
Sbjct: 208 VLTSLGFVFSAFARSLLHLYLGLGVLAGSGWALVFAPALGTLSRYFSRRRVLAVGLALTG 267
Query: 590 NGXXXXXXXXXXXXXXDHFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSPLA 769
NG D +GWR PCGALLR R PLA
Sbjct: 268 NGASSLLLAPTLQLLLDTYGWRGALLLLSAVTLHLAPCGALLRPLVLPGDPPARPRGPLA 327
Query: 770 ALGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALDXXXXXXXXXXXXXXXXXXXXX 949
A GLDLF RR FLVFALGTALV GGYF+PYVHLAPHALD
Sbjct: 328 AFGLDLFARRAFLVFALGTALVGGGYFVPYVHLAPHALDRGLGGYGAALVVAVAAVGDAG 387
Query: 950 XPLLNGWLPDQGW 988
L++GWL DQGW
Sbjct: 388 ARLVSGWLADQGW 400
>ref|XP_849442.1| PREDICTED: similar to solute carrier family 16 (monocarboxylic acid
transporters), member 13 [Canis familiaris].
Length = 425
Score = 101 bits (252), Expect = 1e-21
Identities = 72/233 (30%), Positives = 87/233 (37%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F+ A +W PVGSALST++G RPVVM GG+L + G + ++
Sbjct: 45 FEEQAARVSWIASIGIAVQQFGSPVGSALSTKYGPRPVVMAGGILAASGMLLASLATTLT 104
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
F P L LSRYFSRRR LA GLALTG G
Sbjct: 105 HLYLSIGLLSGSGWALTFTPTLACLSRYFSRRRSLATGLALTGVGLSSFAFAPLFQWLVS 164
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFAL 820
+ WR CGALLR P A L L FL + +
Sbjct: 165 LYAWRGALLLVSALSLHLVACGALLRPLSLMEDPVVG--GPGAQL-TSLLHHGPFLRYTV 221
Query: 821 GTALVAGGYFIPYVHLAPHALDXXXXXXXXXXXXXXXXXXXXXXPLLNGWLPD 979
L+ GYFIPYVHL H D + +GWL D
Sbjct: 222 ALTLINTGYFIPYVHLIAHLQDLDWDPLSAAFLVSVVAISDLVGRVASGWLGD 274
>ref|XP_540498.2| PREDICTED: similar to Monocarboxylate transporter 4 (MCT 4) (MCT 3)
[Canis familiaris].
Length = 470
Score = 84.3 bits (207), Expect = 2e-16
Identities = 56/198 (28%), Positives = 82/198 (41%), Gaps = 2/198 (1%)
Frame = +2
Query: 299 DTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXXXXXXXX 478
DTAW P+ S R+G RPV+++GG+L SLG V ++F
Sbjct: 59 DTAWISSILLAMLYGTGPLCSVCVNRFGCRPVMLMGGLLASLGMVAASFCRSIIQLYLTT 118
Query: 479 XXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXDHFGWRX 658
F P+L L+RYF++RR +A GLA G+ DH+GWR
Sbjct: 119 GVITGLGLALNFQPSLIMLNRYFNKRRPMANGLAAAGSPVFLCALSPLGQLLQDHYGWRG 178
Query: 659 XXXXXXXXXXXXXPCGALLR--XXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFALGTAL 832
C AL+R R L L +F R FL++A+ ++
Sbjct: 179 GFLILGGLLLNCCVCAALMRPLEAPVPGSGPVPQRPSRRLLDLSVFRDRGFLIYAVAASI 238
Query: 833 VAGGYFIPYVHLAPHALD 886
+ G F+P V + +A D
Sbjct: 239 MVLGLFVPPVFVVSYAKD 256
>ref|XP_538259.1| PREDICTED: similar to Monocarboxylate transporter 2 (MCT 2) [Canis
familiaris].
Length = 483
Score = 69.3 bits (168), Expect = 5e-12
Identities = 53/225 (23%), Positives = 82/225 (36%), Gaps = 23/225 (10%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F+ S + AW P+ S L ++G+RPVV+VGG+L LG V ++F
Sbjct: 50 FNTSYSEIAWISSIMLAVMYAGGPISSVLVNKYGSRPVVIVGGLLCCLGMVTASFSTSVI 109
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
PAL + +YF ++R +A GLA+ G+ +
Sbjct: 110 ELYLTMGLICGLGLAFNLQPALTIIGKYFYKKRPMANGLAMAGSPVFLSTLAPFNQYLFN 169
Query: 641 HFGWRXXXXXXXXXXXXXXPCGAL------------------LRXXXXXXXXXXXXRSPL 766
FGW+ G+L +R + P
Sbjct: 170 TFGWKGSFLILGGILLNACVAGSLMRPVEPKQVTRRSKNKIGIRVDDDSDVTKRLRKKPT 229
Query: 767 -----AALGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALD 886
L LF R FL++ G ++ G+F P + LAP+A D
Sbjct: 230 WERINKYLDFSLFKHRGFLIYLSGNVIMFLGFFAPIIFLAPYAKD 274
>ref|XP_548022.2| PREDICTED: similar to solute carrier family 16, member 6 [Canis
familiaris].
Length = 523
Score = 67.0 bits (162), Expect = 3e-11
Identities = 42/148 (28%), Positives = 56/148 (37%)
Frame = +2
Query: 275 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 454
+ FD S +W P+ + LSTR+G R VV+ GG+L S G V ++F
Sbjct: 54 DSFDESNSRISWVISICVFVLTFTAPLSAVLSTRFGHRLVVVAGGLLVSTGMVMASFSRE 113
Query: 455 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 634
F P + LS+YF +RR + +A TG
Sbjct: 114 LYHMYISIGIISGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITAL 173
Query: 635 XDHFGWRXXXXXXXXXXXXXXPCGALLR 718
DH GWR CGALLR
Sbjct: 174 KDHIGWRYSLLFVGLLQLNIIVCGALLR 201
>ref|XP_543918.1| PREDICTED: similar to solute carrier family 16 (monocarboxylic acid
transporters), member 12 [Canis familiaris].
Length = 490
Score = 65.9 bits (159), Expect = 6e-11
Identities = 36/147 (24%), Positives = 58/147 (39%)
Frame = +2
Query: 278 HFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXX 457
+F + TAW P+GS +S + +M+GG+L S G + +F
Sbjct: 49 YFTQDYAQTAWIHSIVDCVTMLCAPLGSVVSNHLSCQVGIMLGGLLASTGLILGSFATSL 108
Query: 458 XXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXX 637
++PA+ + +YFSRR+ LA G+A++G+G
Sbjct: 109 KHLYLTLGVLTGLGFALCYSPAIAMVGKYFSRRKALAYGIAMSGSGIGTFILAPVVQLLI 168
Query: 638 DHFGWRXXXXXXXXXXXXXXPCGALLR 718
+ F WR CGAL+R
Sbjct: 169 EQFSWRGALLILGGFVLNLCVCGALMR 195
>ref|XP_540427.2| PREDICTED: similar to solute carrier family 16, member 5 [Canis
familiaris].
Length = 467
Score = 63.2 bits (152), Expect = 4e-10
Identities = 57/220 (25%), Positives = 75/220 (34%), Gaps = 19/220 (8%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F S +T+W P+ S L R+G R VM+GG L SLG V S+F
Sbjct: 45 FQASNSETSWFPSILTAMLHAGGPLCSILVGRFGCRVTVMLGGALASLGMVASSFCRTLS 104
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
F ++ L YFSR R LA LA G +
Sbjct: 105 QLYLTAGFITGLGMCFSFQSSITVLGFYFSRHRALANALASVGVSLGITLWPLLSRYLLE 164
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSP----------LAALG---- 778
GWR CGA+LR P LAA G
Sbjct: 165 DLGWRGTFLVFGGVFLHCCVCGAILRPVATSMAPETIEGPPPPSKTPAPGCLAACGRAIQ 224
Query: 779 ----LDLFTRRV-FLVFALGTALVAGGYFIPYVHLAPHAL 883
D+ + VF LG + G+ +P+V L P+A+
Sbjct: 225 RHLAFDILRHNAGYRVFTLGVMWMILGFPLPHVFLVPYAM 264
>ref|XP_852708.1| PREDICTED: similar to solute carrier family 16, member 8 [Canis
familiaris].
Length = 423
Score = 62.4 bits (150), Expect = 7e-10
Identities = 38/104 (36%), Positives = 46/104 (44%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F DTAW PV S L TR+G RPV++VGG+L S G V ++F
Sbjct: 50 FGAGYSDTAWVSSIMLAMLYGTGPVSSILVTRFGCRPVMLVGGLLASAGMVLASFATRLL 109
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGN 592
F P+L L YF RRR LA GLA G+
Sbjct: 110 ELYLTAGVLTGLGLALNFQPSLIMLGLYFERRRPLANGLAAAGS 153
>ref|XP_543280.2| PREDICTED: similar to solute carrier family 16 (monocarboxylic acid
transporters), member 14 [Canis familiaris].
Length = 484
Score = 60.8 bits (146), Expect = 2e-09
Identities = 40/148 (27%), Positives = 53/148 (35%)
Frame = +2
Query: 275 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 454
E F +S TAW P G R ++GG++ SLG+V SA+
Sbjct: 63 EEFHQSRGLTAWVSSLSMGITLIVGPFIGLFINTCGCRGTAIIGGLVNSLGWVLSAYAAN 122
Query: 455 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 634
+ PA+ + RYF +RR LA GL+ TG G
Sbjct: 123 VHYLFITFGVTAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTLLLKHL 182
Query: 635 XDHFGWRXXXXXXXXXXXXXXPCGALLR 718
+GWR CGALLR
Sbjct: 183 CAEYGWRDAMFIQGAVSLNLCVCGALLR 210
>ref|XP_533065.2| PREDICTED: similar to Monocarboxylate transporter 1 (MCT 1) isoform
1 [Canis familiaris].
Length = 498
Score = 60.8 bits (146), Expect = 2e-09
Identities = 52/234 (22%), Positives = 77/234 (32%), Gaps = 37/234 (15%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F + + +W P+ S L ++G+RP+++VGG L+ G + ++F
Sbjct: 51 FSATTSEVSWISSIMLAVMYGGGPISSILVNKYGSRPIMIVGGCLSGCGLIAASFCNTVQ 110
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
PAL + +YF +RR LA GLA+ G+
Sbjct: 111 ELYLCIGVIGGLGLAFNLNPALTMIGKYFYKRRPLANGLAMAGSPVFLSTLAPLNQAFFG 170
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSPLAA---------------- 772
FGWR GAL+R RS +
Sbjct: 171 IFGWRGSFLILGGLLLNCCVAGALMRPIGPPPTSAGKDRSKESLQEAEKSDEKKGGDANT 230
Query: 773 ---------------------LGLDLFTRRVFLVFALGTALVAGGYFIPYVHLA 871
L L LFT R FL++ G L+ G F P V L+
Sbjct: 231 DLIGGNRKEEKGSVFQTINKFLDLSLFTHRGFLLYLSGNVLMFFGLFTPLVFLS 284
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,359,180
Number of extensions: 974612
Number of successful extensions: 7144
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7048
Number of HSP's successfully gapped: 11
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000741
(1014 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_699188.1| monocarboxylate transporter 11 [Homo sapiens]. 240 1e-63
Alignment gi|NP_963860.1| monocarboxylate transporter 13 [Homo sapiens]. 109 5e-24
Alignment gi|NP_001193881.1| monocarboxylate transporter 4 [Homo sapiens]. 81 1e-15
Alignment gi|NP_001193880.1| monocarboxylate transporter 4 [Homo sapiens]. 81 1e-15
Alignment gi|NP_001193879.1| monocarboxylate transporter 4 [Homo sapiens]. 81 1e-15
Alignment gi|NP_001035888.1| monocarboxylate transporter 4 [Homo sapiens]. 81 1e-15
Alignment gi|NP_004198.1| monocarboxylate transporter 4 [Homo sapiens]. 81 1e-15
Alignment gi|NP_001035887.1| monocarboxylate transporter 4 [Homo sapiens]. 81 1e-15
Alignment gi|NP_037488.2| monocarboxylate transporter 3 [Homo sapiens]. 75 7e-14
Alignment gi|NP_004722.2| monocarboxylate transporter 2 [Homo sapiens]. 69 5e-12
>ref|NP_699188.1| monocarboxylate transporter 11 [Homo sapiens].
Length = 471
Score = 240 bits (613), Expect = 1e-63
Identities = 139/281 (49%), Positives = 143/281 (50%)
Frame = +2
Query: 146 MTPKPAGPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEHFDRSAQDTAWXXXXX 325
MTP+PAGPPD AEHFDRSAQDTAW
Sbjct: 25 MTPQPAGPPDGGWGWVVAAAAFAINGLSYGLLRSLGLAFPDLAEHFDRSAQDTAWISALA 84
Query: 326 XXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXXXXXXXXXXXXXXXXX 505
PVGSALSTRWGARPVVMVGGVL SLGFVFSAF
Sbjct: 85 LAVQQAASPVGSALSTRWGARPVVMVGGVLASLGFVFSAFASDLLHLYLGLGLLAGFGWA 144
Query: 506 XVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXDHFGWRXXXXXXXXXX 685
VFAPALGTLSRYFSRRRVLAVGLALTGNG D FGWR
Sbjct: 145 LVFAPALGTLSRYFSRRRVLAVGLALTGNGASSLLLAPALQLLLDTFGWRGALLLLGAIT 204
Query: 686 XXXXPCGALLRXXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVH 865
PCGALL RSPLAALGL LFTRR F +FALGTALV GGYF+PYVH
Sbjct: 205 LHLTPCGALLLPLVLPGDPPAPPRSPLAALGLSLFTRRAFSIFALGTALVGGGYFVPYVH 264
Query: 866 LAPHALDXXXXXXXXXXXXXXXXXXXXXXPLLNGWLPDQGW 988
LAPHALD L+ GWL DQGW
Sbjct: 265 LAPHALDRGLGGYGAALVVAVAAMGDAGARLVCGWLADQGW 305
>ref|NP_963860.1| monocarboxylate transporter 13 [Homo sapiens].
Length = 426
Score = 109 bits (272), Expect = 5e-24
Identities = 74/233 (31%), Positives = 91/233 (39%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F+ A +W PVGSALST++G RPVVM GG+L +LG + ++F
Sbjct: 45 FEEQAARVSWIASIGIAVQQFGSPVGSALSTKFGPRPVVMTGGILAALGMLLASFATSLT 104
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
FAP L LS YFSRRR LA GLALTG G
Sbjct: 105 HLYLSIGLLSGSGWALTFAPTLACLSCYFSRRRSLATGLALTGVGLSSFTFAPFFQWLLS 164
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFAL 820
H+ WR CGALLR P A L L FL + +
Sbjct: 165 HYAWRGSLLLVSALSLHLVACGALLRPPSLAEDPAVG--GPRAQL-TSLLHHGPFLRYTV 221
Query: 821 GTALVAGGYFIPYVHLAPHALDXXXXXXXXXXXXXXXXXXXXXXPLLNGWLPD 979
L+ GYFIPY+HL H D +++GWL D
Sbjct: 222 ALTLINTGYFIPYLHLVAHLQDLDWDPLPAAFLLSVVAISDLVGRVVSGWLGD 274
>ref|NP_001193881.1| monocarboxylate transporter 4 [Homo sapiens].
Length = 465
Score = 81.3 bits (199), Expect = 1e-15
Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 1/205 (0%)
Frame = +2
Query: 275 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 454
+ F DTAW P+ S R+G RPV++VGG+ SLG V ++F
Sbjct: 51 QEFGIGYSDTAWISSILLAMLYGTGPLCSVCVNRFGCRPVMLVGGLFASLGMVAASFCRS 110
Query: 455 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 634
F P+L L+RYFS+RR +A GLA G+
Sbjct: 111 IIQVYLTTGVITGLGLALNFQPSLIMLNRYFSKRRPMANGLAAAGSPVFLCALSPLGQLL 170
Query: 635 XDHFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSP-LAALGLDLFTRRVFLV 811
D +GWR C AL+R P L L +F R F++
Sbjct: 171 QDRYGWRGGFLILGGLLLNCCVCAALMRPLVVTAQPGSGPPRPSRRLLDLSVFRDRGFVL 230
Query: 812 FALGTALVAGGYFIPYVHLAPHALD 886
+A+ +++ G F+P V + +A D
Sbjct: 231 YAVAASVMVLGLFVPPVFVVSYAKD 255
>ref|NP_001193880.1| monocarboxylate transporter 4 [Homo sapiens].
Length = 465
Score = 81.3 bits (199), Expect = 1e-15
Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 1/205 (0%)
Frame = +2
Query: 275 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 454
+ F DTAW P+ S R+G RPV++VGG+ SLG V ++F
Sbjct: 51 QEFGIGYSDTAWISSILLAMLYGTGPLCSVCVNRFGCRPVMLVGGLFASLGMVAASFCRS 110
Query: 455 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 634
F P+L L+RYFS+RR +A GLA G+
Sbjct: 111 IIQVYLTTGVITGLGLALNFQPSLIMLNRYFSKRRPMANGLAAAGSPVFLCALSPLGQLL 170
Query: 635 XDHFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSP-LAALGLDLFTRRVFLV 811
D +GWR C AL+R P L L +F R F++
Sbjct: 171 QDRYGWRGGFLILGGLLLNCCVCAALMRPLVVTAQPGSGPPRPSRRLLDLSVFRDRGFVL 230
Query: 812 FALGTALVAGGYFIPYVHLAPHALD 886
+A+ +++ G F+P V + +A D
Sbjct: 231 YAVAASVMVLGLFVPPVFVVSYAKD 255
>ref|NP_001193879.1| monocarboxylate transporter 4 [Homo sapiens].
Length = 465
Score = 81.3 bits (199), Expect = 1e-15
Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 1/205 (0%)
Frame = +2
Query: 275 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 454
+ F DTAW P+ S R+G RPV++VGG+ SLG V ++F
Sbjct: 51 QEFGIGYSDTAWISSILLAMLYGTGPLCSVCVNRFGCRPVMLVGGLFASLGMVAASFCRS 110
Query: 455 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 634
F P+L L+RYFS+RR +A GLA G+
Sbjct: 111 IIQVYLTTGVITGLGLALNFQPSLIMLNRYFSKRRPMANGLAAAGSPVFLCALSPLGQLL 170
Query: 635 XDHFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSP-LAALGLDLFTRRVFLV 811
D +GWR C AL+R P L L +F R F++
Sbjct: 171 QDRYGWRGGFLILGGLLLNCCVCAALMRPLVVTAQPGSGPPRPSRRLLDLSVFRDRGFVL 230
Query: 812 FALGTALVAGGYFIPYVHLAPHALD 886
+A+ +++ G F+P V + +A D
Sbjct: 231 YAVAASVMVLGLFVPPVFVVSYAKD 255
>ref|NP_001035888.1| monocarboxylate transporter 4 [Homo sapiens].
Length = 465
Score = 81.3 bits (199), Expect = 1e-15
Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 1/205 (0%)
Frame = +2
Query: 275 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 454
+ F DTAW P+ S R+G RPV++VGG+ SLG V ++F
Sbjct: 51 QEFGIGYSDTAWISSILLAMLYGTGPLCSVCVNRFGCRPVMLVGGLFASLGMVAASFCRS 110
Query: 455 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 634
F P+L L+RYFS+RR +A GLA G+
Sbjct: 111 IIQVYLTTGVITGLGLALNFQPSLIMLNRYFSKRRPMANGLAAAGSPVFLCALSPLGQLL 170
Query: 635 XDHFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSP-LAALGLDLFTRRVFLV 811
D +GWR C AL+R P L L +F R F++
Sbjct: 171 QDRYGWRGGFLILGGLLLNCCVCAALMRPLVVTAQPGSGPPRPSRRLLDLSVFRDRGFVL 230
Query: 812 FALGTALVAGGYFIPYVHLAPHALD 886
+A+ +++ G F+P V + +A D
Sbjct: 231 YAVAASVMVLGLFVPPVFVVSYAKD 255
>ref|NP_004198.1| monocarboxylate transporter 4 [Homo sapiens].
Length = 465
Score = 81.3 bits (199), Expect = 1e-15
Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 1/205 (0%)
Frame = +2
Query: 275 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 454
+ F DTAW P+ S R+G RPV++VGG+ SLG V ++F
Sbjct: 51 QEFGIGYSDTAWISSILLAMLYGTGPLCSVCVNRFGCRPVMLVGGLFASLGMVAASFCRS 110
Query: 455 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 634
F P+L L+RYFS+RR +A GLA G+
Sbjct: 111 IIQVYLTTGVITGLGLALNFQPSLIMLNRYFSKRRPMANGLAAAGSPVFLCALSPLGQLL 170
Query: 635 XDHFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSP-LAALGLDLFTRRVFLV 811
D +GWR C AL+R P L L +F R F++
Sbjct: 171 QDRYGWRGGFLILGGLLLNCCVCAALMRPLVVTAQPGSGPPRPSRRLLDLSVFRDRGFVL 230
Query: 812 FALGTALVAGGYFIPYVHLAPHALD 886
+A+ +++ G F+P V + +A D
Sbjct: 231 YAVAASVMVLGLFVPPVFVVSYAKD 255
>ref|NP_001035887.1| monocarboxylate transporter 4 [Homo sapiens].
Length = 465
Score = 81.3 bits (199), Expect = 1e-15
Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 1/205 (0%)
Frame = +2
Query: 275 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 454
+ F DTAW P+ S R+G RPV++VGG+ SLG V ++F
Sbjct: 51 QEFGIGYSDTAWISSILLAMLYGTGPLCSVCVNRFGCRPVMLVGGLFASLGMVAASFCRS 110
Query: 455 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 634
F P+L L+RYFS+RR +A GLA G+
Sbjct: 111 IIQVYLTTGVITGLGLALNFQPSLIMLNRYFSKRRPMANGLAAAGSPVFLCALSPLGQLL 170
Query: 635 XDHFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSP-LAALGLDLFTRRVFLV 811
D +GWR C AL+R P L L +F R F++
Sbjct: 171 QDRYGWRGGFLILGGLLLNCCVCAALMRPLVVTAQPGSGPPRPSRRLLDLSVFRDRGFVL 230
Query: 812 FALGTALVAGGYFIPYVHLAPHALD 886
+A+ +++ G F+P V + +A D
Sbjct: 231 YAVAASVMVLGLFVPPVFVVSYAKD 255
>ref|NP_037488.2| monocarboxylate transporter 3 [Homo sapiens].
Length = 504
Score = 75.5 bits (184), Expect = 7e-14
Identities = 61/231 (26%), Positives = 80/231 (34%), Gaps = 29/231 (12%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
FD DTAW PV S L TR+G RPV++ GG+L S G + ++F
Sbjct: 50 FDAGYSDTAWVSSIMLAMLYGTGPVSSILVTRFGCRPVMLAGGLLASAGMILASFATRLL 109
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
F P+L L YF RRR LA GLA G+ +
Sbjct: 110 ELYLTAGVLTGLGLALNFQPSLIMLGLYFERRRPLANGLAAAGSPVFLSALSPLGQQLLE 169
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLR-----------------------------XXXXX 733
FGWR CGA++R
Sbjct: 170 RFGWRGGFLLLGGLLLHCCACGAVMRPPPGPGPRPRRDSAGDRAGDAPGEAEADGAGLQL 229
Query: 734 XXXXXXXRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALD 886
R L L + T R F V+A+ L+A G F+P + L +A D
Sbjct: 230 REASPRVRPRRRLLDLAVCTDRAFAVYAVTKFLMALGLFVPAILLVNYAKD 280
>ref|NP_004722.2| monocarboxylate transporter 2 [Homo sapiens].
Length = 478
Score = 69.3 bits (168), Expect = 5e-12
Identities = 54/224 (24%), Positives = 80/224 (35%), Gaps = 22/224 (9%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F + + AW PV S L ++G+RPVV+ GG+L LG V ++F
Sbjct: 51 FHTTYSEIAWISSIMLAVMYAGGPVSSVLVNKYGSRPVVIAGGLLCCLGMVLASFSSSVV 110
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
PAL + +YF R+R +A GLA+ G+ +
Sbjct: 111 QLYLTMGFITGLGLAFNLQPALTIIGKYFYRKRPMANGLAMAGSPVFLSSLAPFNQYLFN 170
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXR---------SPLAA------- 772
FGW+ G+L+R SP
Sbjct: 171 TFGWKGSFLILGSLLLNACVAGSLMRPLGPNQTTSKSKNKTGKTEDDSSPKKIKTKKSTW 230
Query: 773 ------LGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALD 886
L LF R FL++ G ++ G+F P + LAP+A D
Sbjct: 231 EKVNKYLDFSLFKHRGFLIYLSGNVIMFLGFFAPIIFLAPYAKD 274
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,329,836
Number of extensions: 932266
Number of successful extensions: 5955
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 5856
Number of HSP's successfully gapped: 18
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000741
(1014 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694721.2| monocarboxylate transporter 11 [Mus musculus]. 238 6e-63
Alignment gi|NP_758959.1| monocarboxylate transporter 13 [Mus musculus]. 102 6e-22
Alignment gi|NP_001033743.1| monocarboxylate transporter 4 [Mus musculus]. 86 5e-17
Alignment gi|NP_001033742.1| monocarboxylate transporter 4 [Mus musculus]. 86 5e-17
Alignment gi|NP_109621.1| monocarboxylate transporter 4 [Mus musculus]. 86 5e-17
Alignment gi|NP_065262.1| monocarboxylate transporter 3 [Mus musculus]. 77 2e-14
Alignment gi|NP_766426.1| monocarboxylate transporter 12 [Mus musculus]. 69 6e-12
Alignment gi|NP_001025013.1| monocarboxylate transporter 7 isoform a [Mus... 65 6e-11
Alignment gi|NP_598799.1| monocarboxylate transporter 7 isoform b [Mus mu... 65 6e-11
Alignment gi|NP_035521.1| monocarboxylate transporter 2 [Mus musculus]. 63 3e-10
>ref|NP_694721.2| monocarboxylate transporter 11 [Mus musculus].
Length = 447
Score = 238 bits (607), Expect = 6e-63
Identities = 137/281 (48%), Positives = 142/281 (50%)
Frame = +2
Query: 146 MTPKPAGPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEHFDRSAQDTAWXXXXX 325
MTPKPAGPPD AEHF+RSAQDTAW
Sbjct: 1 MTPKPAGPPDGGWGWVVAAAAFAVNGLSYGLLRSLGLALPDLAEHFERSAQDTAWVSALA 60
Query: 326 XXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXXXXXXXXXXXXXXXXX 505
PVGSALSTRWGARPVVMVGGVLTSLG VFSAF
Sbjct: 61 LAVQQAASPVGSALSTRWGARPVVMVGGVLTSLGLVFSAFARSLLHLYLGLGLLAGSGWA 120
Query: 506 XVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXDHFGWRXXXXXXXXXX 685
VFAPALGTLSRYFSRRRVLAVGLALTGNG D FGWR
Sbjct: 121 LVFAPALGTLSRYFSRRRVLAVGLALTGNGASSLLLAPALQFLLDTFGWRGALLLLGAVT 180
Query: 686 XXXXPCGALLRXXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVH 865
PCGALLR R+PLAALGL LF RR F VFALGTAL+ GGYF+PYVH
Sbjct: 181 LHLTPCGALLRPLALSGDPLAPPRTPLAALGLGLFKRRAFSVFALGTALIGGGYFVPYVH 240
Query: 866 LAPHALDXXXXXXXXXXXXXXXXXXXXXXPLLNGWLPDQGW 988
L PHALD L +GWL DQGW
Sbjct: 241 LGPHALDQGMGGYGAALVVAVAAVGDACARLASGWLADQGW 281
>ref|NP_758959.1| monocarboxylate transporter 13 [Mus musculus].
Length = 428
Score = 102 bits (253), Expect = 6e-22
Identities = 69/233 (29%), Positives = 90/233 (38%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F+ A +W P+GSALST+ G RPVVM GG+L +LG + ++F
Sbjct: 45 FEEQAARVSWIASIGIAVQQFGSPIGSALSTKLGPRPVVMTGGILAALGMLLASFATSLT 104
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
F P + LSRYFS+RR LA+GLALTG G +
Sbjct: 105 HLYLSIGLLSGSGWALTFTPTMACLSRYFSQRRSLAMGLALTGVGISSFAFAPLFQWLIN 164
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFAL 820
++ WR CGALLR P A + L FL +
Sbjct: 165 NYAWRGALLLVSALSLHLMACGALLRPLSLTEDAAVG--GPGAQI-TSLLRHGPFLRYTA 221
Query: 821 GTALVAGGYFIPYVHLAPHALDXXXXXXXXXXXXXXXXXXXXXXPLLNGWLPD 979
L+ G+FIPYVHL H D + +GWL D
Sbjct: 222 ALTLINTGFFIPYVHLVAHLQDLGWDPLPAAFLLSVAAVSDLVGRVASGWLGD 274
>ref|NP_001033743.1| monocarboxylate transporter 4 [Mus musculus].
Length = 470
Score = 85.9 bits (211), Expect = 5e-17
Identities = 57/201 (28%), Positives = 82/201 (40%), Gaps = 5/201 (2%)
Frame = +2
Query: 299 DTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXXXXXXXX 478
DTAW P+ S R+G RPV++VGG+ SLG V ++F
Sbjct: 59 DTAWISSILLAMLYGTGPLCSVCVNRFGCRPVMLVGGLFASLGMVAASFCRSIIQIYLTT 118
Query: 479 XXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXDHFGWRX 658
F P+L L+RYF++RR +A GLA G+ DH+GWR
Sbjct: 119 GVITGLGLALNFQPSLIMLNRYFNKRRPIANGLAAAGSPVFLCALSPLGQLLQDHYGWRG 178
Query: 659 XXXXXXXXXXXXXPCGALLR-----XXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFALG 823
C AL+R R P L L +F R FL++A+
Sbjct: 179 GFLILGGLLLNCCVCAALMRPLVAPQVGGGTEPRGPQRPPQRLLDLSVFRDRGFLIYAVA 238
Query: 824 TALVAGGYFIPYVHLAPHALD 886
+++ G F+P V + +A D
Sbjct: 239 ASIMVLGLFVPPVFVVSYAKD 259
>ref|NP_001033742.1| monocarboxylate transporter 4 [Mus musculus].
Length = 470
Score = 85.9 bits (211), Expect = 5e-17
Identities = 57/201 (28%), Positives = 82/201 (40%), Gaps = 5/201 (2%)
Frame = +2
Query: 299 DTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXXXXXXXX 478
DTAW P+ S R+G RPV++VGG+ SLG V ++F
Sbjct: 59 DTAWISSILLAMLYGTGPLCSVCVNRFGCRPVMLVGGLFASLGMVAASFCRSIIQIYLTT 118
Query: 479 XXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXDHFGWRX 658
F P+L L+RYF++RR +A GLA G+ DH+GWR
Sbjct: 119 GVITGLGLALNFQPSLIMLNRYFNKRRPIANGLAAAGSPVFLCALSPLGQLLQDHYGWRG 178
Query: 659 XXXXXXXXXXXXXPCGALLR-----XXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFALG 823
C AL+R R P L L +F R FL++A+
Sbjct: 179 GFLILGGLLLNCCVCAALMRPLVAPQVGGGTEPRGPQRPPQRLLDLSVFRDRGFLIYAVA 238
Query: 824 TALVAGGYFIPYVHLAPHALD 886
+++ G F+P V + +A D
Sbjct: 239 ASIMVLGLFVPPVFVVSYAKD 259
>ref|NP_109621.1| monocarboxylate transporter 4 [Mus musculus].
Length = 470
Score = 85.9 bits (211), Expect = 5e-17
Identities = 57/201 (28%), Positives = 82/201 (40%), Gaps = 5/201 (2%)
Frame = +2
Query: 299 DTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXXXXXXXX 478
DTAW P+ S R+G RPV++VGG+ SLG V ++F
Sbjct: 59 DTAWISSILLAMLYGTGPLCSVCVNRFGCRPVMLVGGLFASLGMVAASFCRSIIQIYLTT 118
Query: 479 XXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXDHFGWRX 658
F P+L L+RYF++RR +A GLA G+ DH+GWR
Sbjct: 119 GVITGLGLALNFQPSLIMLNRYFNKRRPIANGLAAAGSPVFLCALSPLGQLLQDHYGWRG 178
Query: 659 XXXXXXXXXXXXXPCGALLR-----XXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFALG 823
C AL+R R P L L +F R FL++A+
Sbjct: 179 GFLILGGLLLNCCVCAALMRPLVAPQVGGGTEPRGPQRPPQRLLDLSVFRDRGFLIYAVA 238
Query: 824 TALVAGGYFIPYVHLAPHALD 886
+++ G F+P V + +A D
Sbjct: 239 ASIMVLGLFVPPVFVVSYAKD 259
>ref|NP_065262.1| monocarboxylate transporter 3 [Mus musculus].
Length = 492
Score = 77.4 bits (189), Expect = 2e-14
Identities = 58/209 (27%), Positives = 80/209 (38%), Gaps = 7/209 (3%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F DTAW P+ S L TR+G RPV++ GG+L S G + ++F
Sbjct: 50 FGAGYSDTAWVSSIMLAMLYGTGPLSSILVTRFGCRPVMLAGGLLASAGMILASFASRLV 109
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
F P+L L YF RRR LA GLA G+ +
Sbjct: 110 ELYLTAGVLTGLGLALNFQPSLIMLGLYFERRRPLANGLAAAGSPVFLSMLSPLGQLLGE 169
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSPLAA-------LGLDLFTRR 799
FGWR CGA++R SP L + + T R
Sbjct: 170 RFGWRGGFLLFGGLLLHCCACGAVMRPPPGPPPRRDP--SPHGGPARRRRLLDVAVCTDR 227
Query: 800 VFLVFALGTALVAGGYFIPYVHLAPHALD 886
F+V+ + L+A G F+P + L +A D
Sbjct: 228 AFVVYVVTKFLMALGLFVPAILLVNYAKD 256
>ref|NP_766426.1| monocarboxylate transporter 12 [Mus musculus].
Length = 486
Score = 68.9 bits (167), Expect = 6e-12
Identities = 37/147 (25%), Positives = 60/147 (40%)
Frame = +2
Query: 278 HFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXX 457
+F + TAW P+GS +S + + +M+GG+L S GF+ +F
Sbjct: 49 YFAQDYSQTAWIHSIVDCMTMLCAPLGSVVSNQLSCQAGIMLGGLLASTGFILGSFATSL 108
Query: 458 XXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXX 637
++PA+ + +YFSRR+ LA G+A++G+G
Sbjct: 109 KHLYLSLGVLTGLGFALCYSPAIAMVGKYFSRRKALAYGIAMSGSGIGTFILAPVVQLLI 168
Query: 638 DHFGWRXXXXXXXXXXXXXXPCGALLR 718
+ F WR CGAL+R
Sbjct: 169 EQFSWRGALLILGGFVLNLCVCGALMR 195
>ref|NP_001025013.1| monocarboxylate transporter 7 isoform a [Mus musculus].
Length = 607
Score = 65.5 bits (158), Expect = 6e-11
Identities = 41/148 (27%), Positives = 56/148 (37%)
Frame = +2
Query: 275 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 454
+ FD S +W P+ + LS R+G R VVM GG+L SLG + ++F
Sbjct: 138 DSFDESNSKISWIISICVFVLTFTAPLSTVLSNRFGHRLVVMAGGLLISLGMITASFSQR 197
Query: 455 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 634
F P + LS+YF +RR + +A TG
Sbjct: 198 VYHMYISIGVISGLGYCFSFLPTVTILSQYFDKRRSVVTAVASTGECFAVFAFAPAITAL 257
Query: 635 XDHFGWRXXXXXXXXXXXXXXPCGALLR 718
+H GWR CGALLR
Sbjct: 258 KEHIGWRYSLLFVGLLQLNIMVCGALLR 285
>ref|NP_598799.1| monocarboxylate transporter 7 isoform b [Mus musculus].
Length = 523
Score = 65.5 bits (158), Expect = 6e-11
Identities = 41/148 (27%), Positives = 56/148 (37%)
Frame = +2
Query: 275 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 454
+ FD S +W P+ + LS R+G R VVM GG+L SLG + ++F
Sbjct: 54 DSFDESNSKISWIISICVFVLTFTAPLSTVLSNRFGHRLVVMAGGLLISLGMITASFSQR 113
Query: 455 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 634
F P + LS+YF +RR + +A TG
Sbjct: 114 VYHMYISIGVISGLGYCFSFLPTVTILSQYFDKRRSVVTAVASTGECFAVFAFAPAITAL 173
Query: 635 XDHFGWRXXXXXXXXXXXXXXPCGALLR 718
+H GWR CGALLR
Sbjct: 174 KEHIGWRYSLLFVGLLQLNIMVCGALLR 201
>ref|NP_035521.1| monocarboxylate transporter 2 [Mus musculus].
Length = 484
Score = 63.2 bits (152), Expect = 3e-10
Identities = 49/223 (21%), Positives = 80/223 (35%), Gaps = 21/223 (9%)
Frame = +2
Query: 275 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 454
E F+ ++ AW P+ S L +G+RPVV+VGG+L +G + +++
Sbjct: 50 EIFNTTSSQIAWISSIMLAVMYAGGPISSVLVNNYGSRPVVIVGGLLCCIGMILASYSNS 109
Query: 455 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 634
PAL + +YF RRR LA G A+ G+
Sbjct: 110 VIELYLTVGFIGGLGLAFNLQPALTIIGKYFYRRRPLANGCAMAGSPVFLSTLAPFNQYL 169
Query: 635 XDHFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSPLAA-------------- 772
+++GW+ G L+R +S + +
Sbjct: 170 FNNYGWKGSFLILGGIFLHSCVAGCLMR-PVGPSPNTKKSKSKVGSRHDSTLKKASKVST 228
Query: 773 -------LGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHA 880
L LF R FL++ G ++ G F P + LA +A
Sbjct: 229 AQKVNRFLDFSLFMHRGFLIYLSGNVILFLGIFAPIIFLAQYA 271
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,664,719
Number of extensions: 748712
Number of successful extensions: 4672
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4586
Number of HSP's successfully gapped: 14
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000741
(1014 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131973.1| PREDICTED: monocarboxylate transporter 11-li... 261 3e-70
Alignment gi|XP_003131974.1| PREDICTED: monocarboxylate transporter 13-li... 108 4e-24
Alignment gi|XP_003357973.1| PREDICTED: LOW QUALITY PROTEIN: monocarboxyl... 82 4e-16
Alignment gi|XP_003126076.1| PREDICTED: monocarboxylate transporter 3-lik... 75 6e-14
Alignment gi|XP_003126073.1| PREDICTED: monocarboxylate transporter 3-lik... 75 6e-14
Alignment gi|XP_003126385.1| PREDICTED: monocarboxylate transporter 2 [Su... 72 4e-13
Alignment gi|XP_003358277.1| PREDICTED: monocarboxylate transporter 13-li... 72 6e-13
Alignment gi|XP_001928846.2| PREDICTED: LOW QUALITY PROTEIN: monocarboxyl... 64 1e-10
Alignment gi|XP_001928412.1| PREDICTED: monocarboxylate transporter 1-lik... 61 1e-09
Alignment gi|XP_003131280.1| PREDICTED: monocarboxylate transporter 6-lik... 60 2e-09
>ref|XP_003131973.1| PREDICTED: monocarboxylate transporter 11-like [Sus scrofa].
Length = 447
Score = 261 bits (668), Expect = 3e-70
Identities = 150/281 (53%), Positives = 151/281 (53%)
Frame = +2
Query: 146 MTPKPAGPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEHFDRSAQDTAWXXXXX 325
MTPKPAGPPD AEHFDRSAQDTAW
Sbjct: 1 MTPKPAGPPDGGWGWVVAAAAFVVNGLSYGLLRSLGLALPDLAEHFDRSAQDTAWVSALA 60
Query: 326 XXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXXXXXXXXXXXXXXXXX 505
PVGSALSTRWGARPVVMVGGVLTSLGFVFSAF
Sbjct: 61 LAVQQAASPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFARSLLHLYLGLGVLAGAGWA 120
Query: 506 XVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXDHFGWRXXXXXXXXXX 685
VFAPALGTLSRYFSRRRVLAVGLALTGNG DHFGWR
Sbjct: 121 LVFAPALGTLSRYFSRRRVLAVGLALTGNGASSLLLAPALQLLLDHFGWRGALLLLGAVT 180
Query: 686 XXXXPCGALLRXXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVH 865
PCGALLR RSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVH
Sbjct: 181 LHLTPCGALLRPLELPGDPPTPPRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVH 240
Query: 866 LAPHALDXXXXXXXXXXXXXXXXXXXXXXPLLNGWLPDQGW 988
LAPHALD LL+GWL DQGW
Sbjct: 241 LAPHALDRGLGGYGAALVVAVAAVGDAGARLLSGWLADQGW 281
>ref|XP_003131974.1| PREDICTED: monocarboxylate transporter 13-like [Sus scrofa].
Length = 420
Score = 108 bits (271), Expect = 4e-24
Identities = 71/202 (35%), Positives = 84/202 (41%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F+ A +W PVGSALST++G RPVVM GG+L +LG + ++F
Sbjct: 45 FEEQAARVSWIASIGIAVQQFGSPVGSALSTKFGPRPVVMAGGILAALGMLLASFATSLT 104
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
F P L LSRYFSRRR LA GLALTG G
Sbjct: 105 HLYLSIGLLSGSGWALTFTPTLACLSRYFSRRRSLATGLALTGVGLSSFAFAPLFQWLLS 164
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFAL 820
H+ WR CGALLR P A L L FL + +
Sbjct: 165 HYAWRGALLLVSALSLHLVACGALLRPLSLAEDPAVG--GPGAQLTC-LLHHGPFLRYTV 221
Query: 821 GTALVAGGYFIPYVHLAPHALD 886
L+ GYFIPYVHL H D
Sbjct: 222 ALTLINTGYFIPYVHLVAHLRD 243
>ref|XP_003357973.1| PREDICTED: LOW QUALITY PROTEIN: monocarboxylate transporter 4 [Sus
scrofa].
Length = 458
Score = 82.4 bits (202), Expect = 4e-16
Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 2/198 (1%)
Frame = +2
Query: 299 DTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXXXXXXXX 478
DTAW P+ S R+G RPV++ GG+L SLG V ++F
Sbjct: 59 DTAWVSSILLAMLYGTGPLCSVCVNRFGCRPVMLAGGLLASLGMVSASFCGSIVQLYLTT 118
Query: 479 XXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXDHFGWRX 658
F P+L L+RYF++RR +A GLA G+ DH+GWR
Sbjct: 119 GVITGLGLALNFQPSLIMLNRYFNKRRPMANGLAAAGSPVFLCALSPLGQLLQDHYGWRG 178
Query: 659 XXXXXXXXXXXXXPCGALLR--XXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFALGTAL 832
C AL+R R L L +F R F+++A+ ++
Sbjct: 179 GFLILGGLLLNCCVCAALMRPLEAPGGRQGPGPQRPARRLLDLSVFRDRGFVIYAVAASV 238
Query: 833 VAGGYFIPYVHLAPHALD 886
+ G F+P V + +A D
Sbjct: 239 MVLGLFVPPVFVVSYAKD 256
>ref|XP_003126076.1| PREDICTED: monocarboxylate transporter 3-like [Sus scrofa].
Length = 501
Score = 75.1 bits (183), Expect = 6e-14
Identities = 60/228 (26%), Positives = 81/228 (35%), Gaps = 26/228 (11%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F DTAW PV S L TR+G RPV++VGG+L S G + ++F
Sbjct: 50 FGAGYSDTAWVSSIMLAMLYGTGPVSSILVTRFGCRPVMLVGGLLASAGMILASFATRLL 109
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
F P+L L YF RRR LA GLA G+ +
Sbjct: 110 ELYLTAGVLTGLGLALNFQPSLIMLGLYFERRRPLANGLAAAGSPVFLSALSPLGQLLLE 169
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLR--------------------------XXXXXXXX 742
FGWR CGA++R
Sbjct: 170 RFGWRGGFLLLGGLLLHCCACGAVMRPPPGSDPRPRRDSAGDAPGEAEADCEGLRLREEA 229
Query: 743 XXXXRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALD 886
R+ L + + T R F V+A+ L+A G F+P + L +A D
Sbjct: 230 PSGGRARRRLLDVAVCTDRAFAVYAVTKFLMALGLFVPAILLVNYAKD 277
>ref|XP_003126073.1| PREDICTED: monocarboxylate transporter 3-like [Sus scrofa].
Length = 501
Score = 75.1 bits (183), Expect = 6e-14
Identities = 60/228 (26%), Positives = 81/228 (35%), Gaps = 26/228 (11%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F DTAW PV S L TR+G RPV++VGG+L S G + ++F
Sbjct: 50 FGAGYSDTAWVSSIMLAMLYGTGPVSSILVTRFGCRPVMLVGGLLASAGMILASFATRLL 109
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
F P+L L YF RRR LA GLA G+ +
Sbjct: 110 ELYLTAGVLTGLGLALNFQPSLIMLGLYFERRRPLANGLAAAGSPVFLSALSPLGQLLLE 169
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLR--------------------------XXXXXXXX 742
FGWR CGA++R
Sbjct: 170 RFGWRGGFLLLGGLLLHCCACGAVMRPPPGSDPRPRRDSAGDAPGEAEADCEGLRLREEA 229
Query: 743 XXXXRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALD 886
R+ L + + T R F V+A+ L+A G F+P + L +A D
Sbjct: 230 PSGGRARRRLLDVAVCTDRAFAVYAVTKFLMALGLFVPAILLVNYAKD 277
>ref|XP_003126385.1| PREDICTED: monocarboxylate transporter 2 [Sus scrofa].
Length = 494
Score = 72.4 bits (176), Expect = 4e-13
Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 22/224 (9%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F+ + + AW P+ S L ++G+RPVVMVGG+L LG V ++F
Sbjct: 52 FNTTYSEIAWISSIMLAVMYAGGPISSVLVNKYGSRPVVMVGGLLCCLGMVTASFSTSVL 111
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
PAL + +YF ++R +A+GLA+ G+ +
Sbjct: 112 ELYLTMGFICGLGLAFNLQPALTIIGKYFYKKRPIAIGLAMAGSPVFLSTLAPFNQFLFN 171
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSPLAA---------------- 772
+GWR G+L+R
Sbjct: 172 SYGWRGSFLILGGILLNACVAGSLMRPVGPQLTPKKSKTKDGVRATEPHLKKRHEKKSTW 231
Query: 773 ------LGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALD 886
L LF R FL++ G ++ G+F P + LAP+A D
Sbjct: 232 VKINKYLDFSLFKHRGFLIYLSGNVIMFLGFFAPIIFLAPYAKD 275
>ref|XP_003358277.1| PREDICTED: monocarboxylate transporter 13-like [Sus scrofa].
Length = 287
Score = 71.6 bits (174), Expect = 6e-13
Identities = 48/125 (38%), Positives = 52/125 (41%)
Frame = +2
Query: 512 FAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXDHFGWRXXXXXXXXXXXX 691
F P L LSRYFSRRR LA GLALTG G H+ WR
Sbjct: 33 FTPTLACLSRYFSRRRSLATGLALTGVGLSSFAFAPLFQWLLSHYAWRGALLLVSALSLH 92
Query: 692 XXPCGALLRXXXXXXXXXXXXRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVHLA 871
CGALLR P A L L FL + + L+ GYFIPYVHL
Sbjct: 93 LVACGALLRPLSLAEDPAVG--GPGAQLTC-LLHHGPFLRYTVALTLINTGYFIPYVHLV 149
Query: 872 PHALD 886
H D
Sbjct: 150 AHLRD 154
>ref|XP_001928846.2| PREDICTED: LOW QUALITY PROTEIN: monocarboxylate transporter 12 [Sus
scrofa].
Length = 518
Score = 63.9 bits (154), Expect = 1e-10
Identities = 34/147 (23%), Positives = 58/147 (39%)
Frame = +2
Query: 278 HFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXX 457
+F + TAW P+GS +S + +M+GG+L S G + +F
Sbjct: 81 YFSQDYAQTAWIHSIVDCVTMLCAPLGSVVSNHLSCQVGIMLGGLLASTGLILGSFATSL 140
Query: 458 XXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXX 637
++PA+ + +YF+RR+ LA G++++G+G
Sbjct: 141 KHLYLTLGVLTGLGFALCYSPAIAMVGKYFNRRKALAYGISMSGSGIGIFILAPVVQLLI 200
Query: 638 DHFGWRXXXXXXXXXXXXXXPCGALLR 718
+ F WR CGAL+R
Sbjct: 201 EQFSWRGALLILGGFVLNLCVCGALMR 227
>ref|XP_001928412.1| PREDICTED: monocarboxylate transporter 1-like [Sus scrofa].
Length = 491
Score = 60.8 bits (146), Expect = 1e-09
Identities = 39/148 (26%), Positives = 57/148 (38%)
Frame = +2
Query: 275 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 454
E F S+ + +W P+ S L ++G+RPVV+ GG L+ G + ++F
Sbjct: 49 EIFKASSSEVSWLSSIAFAVMYAGGPISSILVNKYGSRPVVIFGGCLSGCGLIAASFCNT 108
Query: 455 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 634
F PAL + +YF +RR LA GLA+ G+
Sbjct: 109 MQQLYLCIGVIGGLGLAFNFNPALTIIGKYFYKRRPLANGLAMAGSPVFLCALAPLNQAL 168
Query: 635 XDHFGWRXXXXXXXXXXXXXXPCGALLR 718
FGWR GAL+R
Sbjct: 169 FATFGWRGSFLILGGILLNCCVAGALMR 196
>ref|XP_003131280.1| PREDICTED: monocarboxylate transporter 6-like [Sus scrofa].
Length = 466
Score = 60.1 bits (144), Expect = 2e-09
Identities = 53/220 (24%), Positives = 76/220 (34%), Gaps = 19/220 (8%)
Frame = +2
Query: 281 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 460
F S +T+W P+ S L R+G R +M+GGVL SLG V +F
Sbjct: 45 FQASNSETSWFPSIQTAMLHAGGPLCSILVGRFGCRATMMLGGVLASLGMVAGSFCRTLG 104
Query: 461 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 640
F ++ L YF+R +VLA LA TG +
Sbjct: 105 QLYLTAGFITGLGMCFSFQSSITVLGLYFTRWQVLANSLASTGVSLGITLWPLLSRYLLE 164
Query: 641 HFGWRXXXXXXXXXXXXXXPCGALLR------------------XXXXXXXXXXXXRSPL 766
GWR CGA+LR R+
Sbjct: 165 DLGWRGTFLIFGGVFLHCCVCGAILRPVATSVTPETREGPTPPSKRPANSCRAACDRAIQ 224
Query: 767 AALGLDLFTRRV-FLVFALGTALVAGGYFIPYVHLAPHAL 883
L D+ + + VF LG + G+ +P+V L P+A+
Sbjct: 225 RHLAFDVLRQNAGYRVFTLGVVWMIMGFPLPHVFLVPYAI 264
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,363,044
Number of extensions: 620466
Number of successful extensions: 4746
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4675
Number of HSP's successfully gapped: 13
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000741
(1014 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 444 e-122
>Sscrofa_Chr12
|| Length = 63588571
Score = 444 bits (224), Expect = e-122
Identities = 254/260 (97%), Gaps = 3/260 (1%)
Strand = Plus / Minus
Query: 756 gaagccctctggcagccctcggcctagatctcttcacacgccgggtcttcttggtttttg 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54606790 gaagccctctggcagccctcggcctagatctcttcacacgccgggtcttcttggtttttg 54606731
Query: 816 ctctaggcacggccttggtggcgggcgggtacttcatcccctacgtgcacttggcccctc 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54606730 ctctaggcacggccttggtggcgggcgggtacttcatcccctacgtgcacttggcccctc 54606671
Query: 876 acgctttagatcggggtctgggcggatacggggcagcactggtggtggcggtggccgcgg 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54606670 acgctttagatcggggtctgggcggatacggggcagcactggtggtggcggtggccgcgg 54606611
Query: 936 tggggggacgcggccgccc-gctgctcaacgggtggctgccggaccagggttggggtgcc 994
|| |||||||||| ||||| |||||||| |||||||||| |||||||||||| |||||||
Sbjct: 54606610 tg-ggggacgcgggcgcccggctgctcagcgggtggctggcggaccagggtt-gggtgcc 54606553
Query: 995 cctcccgcgtctgctggcga 1014
||||||||||||||||||||
Sbjct: 54606552 cctcccgcgtctgctggcga 54606533
Score = 444 bits (224), Expect = e-122
Identities = 254/260 (97%), Gaps = 3/260 (1%)
Strand = Plus / Plus
Query: 756 gaagccctctggcagccctcggcctagatctcttcacacgccgggtcttcttggtttttg 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54698073 gaagccctctggcagccctcggcctagatctcttcacacgccgggtcttcttggtttttg 54698132
Query: 816 ctctaggcacggccttggtggcgggcgggtacttcatcccctacgtgcacttggcccctc 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54698133 ctctaggcacggccttggtggcgggcgggtacttcatcccctacgtgcacttggcccctc 54698192
Query: 876 acgctttagatcggggtctgggcggatacggggcagcactggtggtggcggtggccgcgg 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54698193 acgctttagatcggggtctgggcggatacggggcagcactggtggtggcggtggccgcgg 54698252
Query: 936 tggggggacgcggccgccc-gctgctcaacgggtggctgccggaccagggttggggtgcc 994
| ||||||||||| ||||| |||||||| |||||||||| |||||||||||| |||||||
Sbjct: 54698253 t-gggggacgcgggcgcccggctgctcagcgggtggctggcggaccagggtt-gggtgcc 54698310
Query: 995 cctcccgcgtctgctggcga 1014
||||||||||||||||||||
Sbjct: 54698311 cctcccgcgtctgctggcga 54698330
Score = 418 bits (211), Expect = e-114
Identities = 211/211 (100%)
Strand = Plus / Plus
Query: 138 aggcggcgatgacccccaagccagccggacccccggacgggggctggggctgggtggtgg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54697028 aggcggcgatgacccccaagccagccggacccccggacgggggctggggctgggtggtgg 54697087
Query: 198 cggccgcagccttcgtggtgaatgggctctcctacgggctgttacgctccctgggcctcg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54697088 cggccgcagccttcgtggtgaatgggctctcctacgggctgttacgctccctgggcctcg 54697147
Query: 258 ccctccctgacctcgcggagcattttgaccgaagcgctcaggacactgcgtgggtcagcg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54697148 ccctccctgacctcgcggagcattttgaccgaagcgctcaggacactgcgtgggtcagcg 54697207
Query: 318 ccctggccttggcggtgcagcaggcagccag 348
|||||||||||||||||||||||||||||||
Sbjct: 54697208 ccctggccttggcggtgcagcaggcagccag 54697238
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 491 ggcgccggctgggccctggtgttcgcccctgcccttgggaccctctcacgttacttctcc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54607055 ggcgccggctgggccctggtgttcgcccctgcccttgggaccctctcacgttacttctcc 54606996
Query: 551 cgccgtcgagtcttggccgtggggctggccctcacgggcaacggggcctcctcgctgctc 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54606995 cgccgtcgagtcttggccgtggggctggccctcacgggcaacggggcctcctcgctgctc 54606936
Query: 611 ctggcgcccgccttgcagctcctcctggatcatttcggctggcggggcgccctgctcctc 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54606935 ctggcgcccgccttgcagctcctcctggatcatttcggctggcggggcgccctgctcctc 54606876
Query: 671 ctcggcgccgttaccctccacctc 694
||||||||||||||||||||||||
Sbjct: 54606875 ctcggcgccgttaccctccacctc 54606852
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Plus
Query: 491 ggcgccggctgggccctggtgttcgcccctgcccttgggaccctctcacgttacttctcc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54697808 ggcgccggctgggccctggtgttcgcccctgcccttgggaccctctcacgttacttctcc 54697867
Query: 551 cgccgtcgagtcttggccgtggggctggccctcacgggcaacggggcctcctcgctgctc 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54697868 cgccgtcgagtcttggccgtggggctggccctcacgggcaacggggcctcctcgctgctc 54697927
Query: 611 ctggcgcccgccttgcagctcctcctggatcatttcggctggcggggcgccctgctcctc 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54697928 ctggcgcccgccttgcagctcctcctggatcatttcggctggcggggcgccctgctcctc 54697987
Query: 671 ctcggcgccgttaccctccacctc 694
||||||||||||||||||||||||
Sbjct: 54697988 ctcggcgccgttaccctccacctc 54698011
Score = 303 bits (153), Expect = 1e-79
Identities = 201/212 (94%), Gaps = 5/212 (2%)
Strand = Plus / Minus
Query: 138 aggcggcgatgacccccaagccag-ccggacccccggacgggggctggggctgggtggtg 196
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 54607831 aggcggagatgacccccaagccaggccggacccccggacgggggctggggctgggtggtg 54607772
Query: 197 gcggccgcagccttcgtggtgaatgggctctcctacgggctgttacgctccctgggcctc 256
|||||||||||||| |||| ||||||||||||||||||||||||| |||||| || |||
Sbjct: 54607771 gcggccgcagccttggtggggaatgggctctcctacgggctgttaggctccc--gggctc 54607714
Query: 257 gccctccctgacctcgcggagcattttgaccgaagcgctcaggacactgcgtgggtcagc 316
||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 54607713 gccgtccctgacctcgcggagcattttgaccgaagcgctca-gaca-tgcgtgggtcagc 54607656
Query: 317 gccctggccttggcggtgcagcaggcagccag 348
||||||||||||||||||||||||||||||||
Sbjct: 54607655 gccctggccttggcggtgcagcaggcagccag 54607624
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 348 gcccagtgggcagcgccctgagcacccgctggggggcgcgcccggttgtgatggttggag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54607362 gcccagtgggcagcgccctgagcacccgctggggggcgcgcccggttgtgatggttggag 54607303
Query: 408 gcgtcctcacctcgctcggcttcgttttctcggctttcgcccgcagtctgctgcacctct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54607302 gcgtcctcacctcgctcggcttcgttttctcggctttcgcccgcagtctgctgcacctct 54607243
Query: 468 atcttggcctgggcgtccttgctgg 492
|||||||||||||||||||||||||
Sbjct: 54607242 atcttggcctgggcgtccttgctgg 54607218
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 348 gcccagtgggcagcgccctgagcacccgctggggggcgcgcccggttgtgatggttggag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54697501 gcccagtgggcagcgccctgagcacccgctggggggcgcgcccggttgtgatggttggag 54697560
Query: 408 gcgtcctcacctcgctcggcttcgttttctcggctttcgcccgcagtctgctgcacctct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54697561 gcgtcctcacctcgctcggcttcgttttctcggctttcgcccgcagtctgctgcacctct 54697620
Query: 468 atcttggcctgggcgtccttgctgg 492
|||||||||||||||||||||||||
Sbjct: 54697621 atcttggcctgggcgtccttgctgg 54697645
Score = 161 bits (81), Expect = 9e-37
Identities = 127/141 (90%), Gaps = 1/141 (0%)
Strand = Plus / Plus
Query: 1 ctgtttacccggagagcctgtccaagttgggctccatctcggcattctctcccctctggg 60
||||||||||||||| ||||| ||||||||| |||||||||| |||||||||| ||||||
Sbjct: 54696563 ctgtttacccggagatcctgtgcaagttgggatccatctcggaattctctcccttctggg 54696622
Query: 61 gccccgcccgcccggaaagcggggagaaaaccgggccgagccattcctcgccc-ttcccc 119
||||||||||||||||||||||||| |||||||||| ||||| || |||||| ||||||
Sbjct: 54696623 gccccgcccgcccggaaagcggggataaaaccgggcgaagccaatcatcgccctttcccc 54696682
Query: 120 tccccgcaccgccgggagagg 140
||| ||||||| ||| |||||
Sbjct: 54696683 tcctcgcaccgacggaagagg 54696703
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,982,420
Number of extensions: 167
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 9
Length of query: 1014
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 993
Effective length of database: 2,808,413,156
Effective search space: 2788754263908
Effective search space used: 2788754263908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)