Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000747
(1076 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035610.1| 60S ribosomal protein L7a [Bos taurus]. 447 e-126
Alignment gi|XP_002688254.1| PREDICTED: ribosomal protein L7a-like [Bos t... 424 e-119
Alignment gi|XP_869201.1| PREDICTED: ribosomal protein L7a-like [Bos taur... 424 e-119
Alignment gi|XP_001256524.2| PREDICTED: ribosomal protein L7a-like [Bos t... 177 1e-44
Alignment gi|XP_875665.3| PREDICTED: ribosomal protein L7a-like [Bos taur... 177 1e-44
Alignment gi|XP_002695505.1| PREDICTED: ribosomal protein L7a-like [Bos t... 98 1e-20
Alignment gi|XP_002684484.1| PREDICTED: ribosomal protein L7a-like [Bos t... 98 1e-20
Alignment gi|NP_001070472.1| NHP2-like protein 1 [Bos taurus]. 50 3e-06
>ref|NP_001035610.1| 60S ribosomal protein L7a [Bos taurus].
Length = 266
Score = 447 bits (1150), Expect = e-126
Identities = 225/238 (94%), Positives = 225/238 (94%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD
Sbjct: 29 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 88
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE
Sbjct: 89 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 148
Query: 580 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 759
NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN
Sbjct: 149 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 208
Query: 760 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
SEDK ALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARI TKLG
Sbjct: 209 SEDKSALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG 266
>ref|XP_002688254.1| PREDICTED: ribosomal protein L7a-like [Bos taurus].
Length = 266
Score = 424 bits (1090), Expect = e-119
Identities = 215/238 (90%), Positives = 220/238 (92%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
NPLFEK PKNFG QDIQPKRDLTRFVKWPRYIRLQ+QRAILYKRLKVPPAINQFTQALD
Sbjct: 29 NPLFEKWPKNFGFTQDIQPKRDLTRFVKWPRYIRLQQQRAILYKRLKVPPAINQFTQALD 88
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
QTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV+TVTTLVE
Sbjct: 89 PQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVDTVTTLVE 148
Query: 580 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 759
+KKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLV+RKTCTTVAFTQVN
Sbjct: 149 SKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVYRKTCTTVAFTQVN 208
Query: 760 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
SEDK ALAKLVEAIRTNYNDRYDEIRRHWGG+VLGPKSVA I TKLG
Sbjct: 209 SEDKSALAKLVEAIRTNYNDRYDEIRRHWGGSVLGPKSVACITKLEKAKAKELATKLG 266
>ref|XP_869201.1| PREDICTED: ribosomal protein L7a-like [Bos taurus].
Length = 266
Score = 424 bits (1090), Expect = e-119
Identities = 215/238 (90%), Positives = 220/238 (92%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
NPLFEK PKNFG QDIQPKRDLTRFVKWPRYIRLQ+QRAILYKRLKVPPAINQFTQALD
Sbjct: 29 NPLFEKWPKNFGFTQDIQPKRDLTRFVKWPRYIRLQQQRAILYKRLKVPPAINQFTQALD 88
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
QTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV+TVTTLVE
Sbjct: 89 PQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVDTVTTLVE 148
Query: 580 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 759
+KKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLV+RKTCTTVAFTQVN
Sbjct: 149 SKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVYRKTCTTVAFTQVN 208
Query: 760 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
SEDK ALAKLVEAIRTNYNDRYDEIRRHWGG+VLGPKSVA I TKLG
Sbjct: 209 SEDKSALAKLVEAIRTNYNDRYDEIRRHWGGSVLGPKSVACITKLEKAKAKELATKLG 266
>ref|XP_001256524.2| PREDICTED: ribosomal protein L7a-like [Bos taurus].
Length = 172
Score = 177 bits (449), Expect = 1e-44
Identities = 88/105 (83%), Positives = 90/105 (85%)
Frame = +1
Query: 619 DPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEA 798
D +LVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDK ALAKLVEA
Sbjct: 68 DVHKLVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKSALAKLVEA 127
Query: 799 IRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
IRTNYNDRYDEIRRHWGGN+LGPKSVARI TKLG
Sbjct: 128 IRTNYNDRYDEIRRHWGGNILGPKSVARIAKQEKTKAKELATKLG 172
>ref|XP_875665.3| PREDICTED: ribosomal protein L7a-like [Bos taurus].
Length = 166
Score = 177 bits (449), Expect = 1e-44
Identities = 87/102 (85%), Positives = 89/102 (87%)
Frame = +1
Query: 628 ELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRT 807
+LVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDK ALAKLVEAIRT
Sbjct: 65 QLVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKSALAKLVEAIRT 124
Query: 808 NYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
NYNDRYDEIRRHWGGN+LGPKSVARI TKLG
Sbjct: 125 NYNDRYDEIRRHWGGNILGPKSVARIAKQEKTKAKELATKLG 166
>ref|XP_002695505.1| PREDICTED: ribosomal protein L7a-like [Bos taurus].
Length = 87
Score = 97.8 bits (242), Expect = 1e-20
Identities = 48/80 (60%), Positives = 55/80 (68%)
Frame = +1
Query: 694 KARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 873
KA+ GRLVH+KTCTT+AFTQV+ +DK A+LVEA+ T YNDRY EI HWGG VLGPKS
Sbjct: 8 KAKPGRLVHKKTCTTIAFTQVSLDDKATSAELVEAVSTCYNDRYHEIHHHWGGRVLGPKS 67
Query: 874 VARIXXXXXXXXXXXXTKLG 933
VA TKLG
Sbjct: 68 VALCAKVEKVRVKEQATKLG 87
>ref|XP_002684484.1| PREDICTED: ribosomal protein L7a-like [Bos taurus].
Length = 87
Score = 97.8 bits (242), Expect = 1e-20
Identities = 48/80 (60%), Positives = 55/80 (68%)
Frame = +1
Query: 694 KARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 873
KA+ GRLVH+KTCTT+AFTQV+ +DK A+LVEA+ T YNDRY EI HWGG VLGPKS
Sbjct: 8 KAKPGRLVHKKTCTTIAFTQVSLDDKATSAELVEAVSTCYNDRYHEIHHHWGGRVLGPKS 67
Query: 874 VARIXXXXXXXXXXXXTKLG 933
VA TKLG
Sbjct: 68 VALCAKVEKVRVKEQATKLG 87
>ref|NP_001070472.1| NHP2-like protein 1 [Bos taurus].
Length = 128
Score = 50.4 bits (119), Expect = 3e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR G N T + ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,718,198
Number of extensions: 1086384
Number of successful extensions: 4686
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4669
Number of HSP's successfully gapped: 8
Length of query: 358
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 255
Effective length of database: 14,273,310
Effective search space: 3639694050
Effective search space used: 3639694050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000747
(1076 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537800.1| PREDICTED: similar to 60S ribosomal protein L7a... 449 e-126
Alignment gi|XP_855278.1| PREDICTED: similar to 60S ribosomal protein L7a... 363 e-100
Alignment gi|XP_535657.2| PREDICTED: similar to 60S ribosomal protein L7a... 287 1e-77
Alignment gi|XP_851183.1| PREDICTED: similar to 60S ribosomal protein L7a... 270 2e-72
Alignment gi|XP_854004.1| PREDICTED: similar to 60S ribosomal protein L7a... 249 4e-66
Alignment gi|XP_848843.1| PREDICTED: similar to 60S ribosomal protein L7a... 167 2e-41
Alignment gi|XP_851929.1| PREDICTED: similar to 60S ribosomal protein L7a... 77 3e-14
Alignment gi|XP_853639.1| PREDICTED: similar to NHP2-like protein 1 (High... 50 3e-06
Alignment gi|XP_531713.1| PREDICTED: similar to NHP2-like protein 1 (High... 50 3e-06
Alignment gi|XP_865262.1| PREDICTED: similar to NHP2-like protein 1 (High... 49 6e-06
>ref|XP_537800.1| PREDICTED: similar to 60S ribosomal protein L7a [Canis familiaris].
Length = 266
Score = 449 bits (1156), Expect = e-126
Identities = 226/238 (94%), Positives = 226/238 (94%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD
Sbjct: 29 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 88
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE
Sbjct: 89 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 148
Query: 580 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 759
NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN
Sbjct: 149 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 208
Query: 760 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARI TKLG
Sbjct: 209 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG 266
>ref|XP_855278.1| PREDICTED: similar to 60S ribosomal protein L7a [Canis familiaris].
Length = 371
Score = 363 bits (931), Expect = e-100
Identities = 192/250 (76%), Positives = 199/250 (79%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
NPLFEKRPKNFGI QDIQPKRDLT FVKWP YIRLQRQRAILYKRLKVPPAINQ TQALD
Sbjct: 93 NPLFEKRPKNFGIQQDIQPKRDLTHFVKWPSYIRLQRQRAILYKRLKVPPAINQSTQALD 152
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
QT QLLKLA+KYRPET+QEKKQ+LLA +KKAAGKG VTTLVE
Sbjct: 153 HQTVMQLLKLAYKYRPETRQEKKQKLLALEKKKAAGKG----------------VTTLVE 196
Query: 580 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 759
NKKAQLVVIAHDV+ IELVVFLP LC KMGVPYCIIKGKARLGR VHRKTCTTVAFTQVN
Sbjct: 197 NKKAQLVVIAHDVNSIELVVFLPTLCHKMGVPYCIIKGKARLGRQVHRKTCTTVAFTQVN 256
Query: 760 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG*V 939
SEDK ALAKLVE IRTNYNDRYDEI RHWGGNVLGPKSVA I TKLG +
Sbjct: 257 SEDKRALAKLVETIRTNYNDRYDEIHRHWGGNVLGPKSVAPIAKLEKAKAQELATKLGYM 316
Query: 940 YTAEASVHKS 969
E SV K+
Sbjct: 317 DAVEFSVCKN 326
>ref|XP_535657.2| PREDICTED: similar to 60S ribosomal protein L7a [Canis familiaris].
Length = 174
Score = 287 bits (734), Expect = 1e-77
Identities = 148/173 (85%), Positives = 151/173 (87%)
Frame = +1
Query: 415 QLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQ 594
QLLKL H YRPETKQEKKQRLLA AEKKAAGKGDVP KR PVL AGVNTVTTLV+NKKAQ
Sbjct: 2 QLLKLCHTYRPETKQEKKQRLLAWAEKKAAGKGDVPIKRRPVLGAGVNTVTTLVKNKKAQ 61
Query: 595 LVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKG 774
LVVIAHDVDP ELVVFLPALC K GVPYCIIKGKARLGRLV+RKTCTTVAFTQVNSEDKG
Sbjct: 62 LVVIAHDVDPTELVVFLPALCCKTGVPYCIIKGKARLGRLVNRKTCTTVAFTQVNSEDKG 121
Query: 775 ALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
ALAKLVEAIRTNYNDRYDEI RHWGGNVLGPKSVARI T+LG
Sbjct: 122 ALAKLVEAIRTNYNDRYDEISRHWGGNVLGPKSVARITKLEKAKAKELATELG 174
>ref|XP_851183.1| PREDICTED: similar to 60S ribosomal protein L7a (Surfeit locus
protein 3) [Canis familiaris].
Length = 223
Score = 270 bits (689), Expect = 2e-72
Identities = 138/180 (76%), Positives = 150/180 (83%), Gaps = 2/180 (1%)
Frame = +1
Query: 310 RYIRLQRQRAILYKR--LKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLA 483
+ ++ + + + YKR L+VPP NQFTQ LD QTATQL KLAHKYRPETKQEK+QRLL
Sbjct: 44 KIVKPKSKNSFQYKRNILEVPPTFNQFTQDLDHQTATQLFKLAHKYRPETKQEKQQRLLT 103
Query: 484 RAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRK 663
EKKAAGKGD PTKRPP LRAGVNTVTTLVEN+KAQLVVIAHDVDPIELVVFLPALC K
Sbjct: 104 LDEKKAAGKGDAPTKRPPFLRAGVNTVTTLVENQKAQLVVIAHDVDPIELVVFLPALCHK 163
Query: 664 MGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRH 843
+GVP CIIKGKA+L LVHRKTC V FTQVN EDK ALAKLVEAIRTNYNDRYD+ H
Sbjct: 164 LGVPCCIIKGKAKLRHLVHRKTCIVVTFTQVNWEDKRALAKLVEAIRTNYNDRYDKNHCH 223
>ref|XP_854004.1| PREDICTED: similar to 60S ribosomal protein L7a [Canis familiaris].
Length = 249
Score = 249 bits (635), Expect = 4e-66
Identities = 146/238 (61%), Positives = 153/238 (64%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
NPLFEK+PKNFGIGQ IQPKRD T FVKWPRYIR + P IN
Sbjct: 49 NPLFEKKPKNFGIGQGIQPKRDRTPFVKWPRYIRCSGRG---------PFCIN------- 92
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
+ LL L RP ++ + L PT GVNTVTTLVE
Sbjct: 93 --VSKWLLPLTSAPRPGATKQLRSCL------------SWPT-------TGVNTVTTLVE 131
Query: 580 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 759
NKKA LVV HDVDPIELVVF PALC KMGVPYCIIKGKARLG LVHRKTCTTV FTQVN
Sbjct: 132 NKKAHLVVRPHDVDPIELVVFPPALCCKMGVPYCIIKGKARLGCLVHRKTCTTVTFTQVN 191
Query: 760 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
SEDKGALAKLVEAIRTNYNDRYDE+ R WGGNVLGPKSVA I TKLG
Sbjct: 192 SEDKGALAKLVEAIRTNYNDRYDEVCRLWGGNVLGPKSVACIAKEEKAKAKKLATKLG 249
>ref|XP_848843.1| PREDICTED: similar to 60S ribosomal protein L7a [Canis familiaris].
Length = 231
Score = 167 bits (422), Expect = 2e-41
Identities = 108/238 (45%), Positives = 119/238 (50%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
NPL EKRPK FGIGQDIQPKRDL RFVKWP YI+LQ QRAILYK L+VPP INQFTQA +
Sbjct: 67 NPLCEKRPKYFGIGQDIQPKRDLNRFVKWPHYIQLQLQRAILYKHLEVPPTINQFTQAFN 126
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
T +K R + K K +R VL+AGVNTVT LVE
Sbjct: 127 SPT------------------RKSRACSGLRGKLQAK-----ERLSVLQAGVNTVTILVE 163
Query: 580 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 759
KKAQL +I H VDPIEL+VFLP L
Sbjct: 164 TKKAQLGMITHSVDPIELLVFLPIL----------------------------------- 188
Query: 760 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
TNY+DRYD I +WGGNVLGP SV I TKLG
Sbjct: 189 ---------------TNYSDRYDGICCNWGGNVLGPTSVTLITKLERAKAKELATKLG 231
>ref|XP_851929.1| PREDICTED: similar to 60S ribosomal protein L7a [Canis familiaris].
Length = 228
Score = 77.0 bits (188), Expect = 3e-14
Identities = 68/196 (34%), Positives = 83/196 (42%), Gaps = 4/196 (2%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYI----RLQRQRAILYKRLKVPPAINQFT 387
+PL EKRP++ G+GQD P+ PR + L+RQRA L R + P
Sbjct: 47 SPLLEKRPESLGLGQDCGPRGPCL-----PRQLASRRELRRQRAGLQTRPQASPV----- 96
Query: 388 QALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVT 567
G P R G
Sbjct: 97 --------------------------------SPPGPCTANGHSAASAGPDCRRGEE--- 121
Query: 568 TLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAF 747
E +K QLVVIA DVDPIELV + G P+ + KG A GRLV KTC +VA
Sbjct: 122 ---EAEKVQLVVIARDVDPIELVSSCLSCVVGWG-PHRVSKGSAGKGRLVPVKTCPSVAL 177
Query: 748 TQVNSEDKGALAKLVE 795
TQVNSED GALAKL++
Sbjct: 178 TQVNSEDGGALAKLMK 193
>ref|XP_853639.1| PREDICTED: similar to NHP2-like protein 1 (High mobility group-like
nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5
kDa protein) (Sperm specific antigen 1) (Fertilization
antigen 1) (FA-1) [Canis familiaris].
Length = 131
Score = 50.4 bits (119), Expect = 3e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR G N T + ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 38 LRKGANEATKTLNRVISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 94
>ref|XP_531713.1| PREDICTED: similar to NHP2-like protein 1 (High mobility group-like
nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5
kDa protein) (Sperm specific antigen 1) (Fertilization
antigen 1) (FA-1) [Canis familiaris].
Length = 128
Score = 50.4 bits (119), Expect = 3e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR G N T + ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
>ref|XP_865262.1| PREDICTED: similar to NHP2-like protein 1 (High mobility group-like
nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5
kDa protein) (Sperm specific antigen 1) (Fertilization
antigen 1) (FA-1) isoform 2 [Canis familiaris].
Length = 128
Score = 49.3 bits (116), Expect = 6e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR G N T + ++ +V+A D P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGANEATKTLNRGISEFIVMAADAKPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,500,038
Number of extensions: 960905
Number of successful extensions: 4936
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4904
Number of HSP's successfully gapped: 15
Length of query: 358
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 254
Effective length of database: 15,407,560
Effective search space: 3913520240
Effective search space used: 3913520240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000747
(1076 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000963.1| 60S ribosomal protein L7a [Homo sapiens]. 449 e-126
Alignment gi|NP_001003796.1| NHP2-like protein 1 [Homo sapiens]. 50 3e-06
Alignment gi|NP_004999.1| NHP2-like protein 1 [Homo sapiens]. 50 3e-06
>ref|NP_000963.1| 60S ribosomal protein L7a [Homo sapiens].
Length = 266
Score = 449 bits (1156), Expect = e-126
Identities = 226/238 (94%), Positives = 226/238 (94%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD
Sbjct: 29 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 88
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE
Sbjct: 89 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 148
Query: 580 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 759
NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN
Sbjct: 149 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 208
Query: 760 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARI TKLG
Sbjct: 209 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG 266
>ref|NP_001003796.1| NHP2-like protein 1 [Homo sapiens].
Length = 128
Score = 50.4 bits (119), Expect = 3e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR G N T + ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
>ref|NP_004999.1| NHP2-like protein 1 [Homo sapiens].
Length = 128
Score = 50.4 bits (119), Expect = 3e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR G N T + ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,496,835
Number of extensions: 914170
Number of successful extensions: 4483
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4466
Number of HSP's successfully gapped: 3
Length of query: 358
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 254
Effective length of database: 14,868,908
Effective search space: 3776702632
Effective search space used: 3776702632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000747
(1076 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038749.1| 60S ribosomal protein L7a [Mus musculus]. 447 e-126
Alignment gi|XP_914375.1| PREDICTED: 60S ribosomal protein L7a-like [Mus ... 409 e-114
Alignment gi|XP_003086254.1| PREDICTED: 60S ribosomal protein L7a-like [M... 398 e-111
Alignment gi|XP_003086773.1| PREDICTED: NHP2-like protein 1-like [Mus mus... 52 8e-07
Alignment gi|XP_003086982.1| PREDICTED: NHP2-like protein 1-like [Mus mus... 51 2e-06
Alignment gi|XP_003085226.1| PREDICTED: NHP2-like protein 1-like [Mus mus... 51 2e-06
Alignment gi|XP_003085225.1| PREDICTED: NHP2-like protein 1-like [Mus mus... 51 2e-06
Alignment gi|NP_035612.2| NHP2-like protein 1 [Mus musculus]. 50 2e-06
Alignment gi|XP_486217.2| PREDICTED: NHP2-like protein 1-like [Mus muscul... 50 2e-06
>ref|NP_038749.1| 60S ribosomal protein L7a [Mus musculus].
Length = 266
Score = 447 bits (1151), Expect = e-126
Identities = 225/238 (94%), Positives = 225/238 (94%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD
Sbjct: 29 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 88
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE
Sbjct: 89 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 148
Query: 580 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 759
NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLG LVHRKTCTTVAFTQVN
Sbjct: 149 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVN 208
Query: 760 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARI TKLG
Sbjct: 209 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG 266
>ref|XP_914375.1| PREDICTED: 60S ribosomal protein L7a-like [Mus musculus].
Length = 266
Score = 409 bits (1051), Expect = e-114
Identities = 207/238 (86%), Positives = 214/238 (89%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
NPLFEKRPKNFGIGQDIQPKR LT FVKWP YIRLQ+QRAILYKRLKVPPAI QFTQALD
Sbjct: 29 NPLFEKRPKNFGIGQDIQPKRVLTCFVKWPCYIRLQQQRAILYKRLKVPPAIKQFTQALD 88
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
RQTATQLLKL+HKYRPETKQEKKQRLLA AEKKAAGK +PTKRPPVLRAGVNTVTTLVE
Sbjct: 89 RQTATQLLKLSHKYRPETKQEKKQRLLAHAEKKAAGKDTIPTKRPPVLRAGVNTVTTLVE 148
Query: 580 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 759
NKKAQLVVIAHDVDPIELVVFLPALC+KMGVPYCIIKGKARLG LVHRKTCTTVAFTQVN
Sbjct: 149 NKKAQLVVIAHDVDPIELVVFLPALCQKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVN 208
Query: 760 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
SE+KGALAKLVEAIRTNYND YD+IR HWG N+LGPKSVARI T LG
Sbjct: 209 SENKGALAKLVEAIRTNYNDIYDKIRCHWGDNILGPKSVARIAKLEKAKAKELATNLG 266
>ref|XP_003086254.1| PREDICTED: 60S ribosomal protein L7a-like [Mus musculus].
Length = 278
Score = 398 bits (1023), Expect = e-111
Identities = 206/239 (86%), Positives = 212/239 (88%), Gaps = 1/239 (0%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
NPLFEKRPKNF I Q+IQPKRDLTRFVKWPRYIRLQ ++AILYKRLKVPPAINQFTQALD
Sbjct: 41 NPLFEKRPKNFSIKQNIQPKRDLTRFVKWPRYIRLQWRKAILYKRLKVPPAINQFTQALD 100
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
RQTATQLLK AHKYRPETKQEKKQRLLARAEKKA KG+VPTKRPP L GVNTVT LVE
Sbjct: 101 RQTATQLLKPAHKYRPETKQEKKQRLLARAEKKAVDKGNVPTKRPPAL-GGVNTVTILVE 159
Query: 580 NKKAQLVVIAHDVDPIE-LVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQV 756
NKKAQLVVIAHDVDPIE LVVFLPALCRKMGVPYCIIKGKARLG LVHRKTCTTVAFT+V
Sbjct: 160 NKKAQLVVIAHDVDPIEMLVVFLPALCRKMGVPYCIIKGKARLGCLVHRKTCTTVAFTRV 219
Query: 757 NSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
NSEDKGALAKLVEAIRTNYNDRYDEI RHWGGNVLGPKSVA + KLG
Sbjct: 220 NSEDKGALAKLVEAIRTNYNDRYDEIHRHWGGNVLGPKSVACLAKLEKAKAKELAPKLG 278
>ref|XP_003086773.1| PREDICTED: NHP2-like protein 1-like [Mus musculus].
Length = 128
Score = 52.0 bits (123), Expect = 8e-07
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR G N T + ++L+V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGANEATKTLNRGISELIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
>ref|XP_003086982.1| PREDICTED: NHP2-like protein 1-like [Mus musculus].
Length = 134
Score = 50.8 bits (120), Expect = 2e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR GVN T ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGVNEATKTPNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
>ref|XP_003085226.1| PREDICTED: NHP2-like protein 1-like [Mus musculus].
Length = 128
Score = 50.8 bits (120), Expect = 2e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR GVN T ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGVNEATKTPNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
>ref|XP_003085225.1| PREDICTED: NHP2-like protein 1-like [Mus musculus].
Length = 128
Score = 50.8 bits (120), Expect = 2e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR GVN T ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGVNEATKTPNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
>ref|NP_035612.2| NHP2-like protein 1 [Mus musculus].
Length = 128
Score = 50.4 bits (119), Expect = 2e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR G N T + ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
>ref|XP_486217.2| PREDICTED: NHP2-like protein 1-like [Mus musculus].
Length = 128
Score = 50.4 bits (119), Expect = 2e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR G N T + ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,000,274
Number of extensions: 760190
Number of successful extensions: 3612
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3596
Number of HSP's successfully gapped: 9
Length of query: 358
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 255
Effective length of database: 12,523,851
Effective search space: 3193582005
Effective search space used: 3193582005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000747
(1076 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354800.1| PREDICTED: 60S ribosomal protein L7a-like is... 441 e-124
Alignment gi|XP_003125024.2| PREDICTED: 60S ribosomal protein L7a-like is... 441 e-124
Alignment gi|XP_003354799.1| PREDICTED: 60S ribosomal protein L7a-like is... 441 e-124
Alignment gi|NP_001177156.1| NHP2 non-histone chromosome protein 2-like 1... 50 2e-06
Alignment gi|NP_001177155.1| NHP2 non-histone chromosome protein 2-like 1... 50 2e-06
Alignment gi|XP_003360438.1| PREDICTED: NHP2-like protein 1-like [Sus scr... 50 2e-06
>ref|XP_003354800.1| PREDICTED: 60S ribosomal protein L7a-like isoform 3 [Sus scrofa].
Length = 266
Score = 441 bits (1133), Expect = e-124
Identities = 222/238 (93%), Positives = 223/238 (93%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
N LFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPP INQFTQALD
Sbjct: 29 NLLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPTINQFTQALD 88
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
RQTATQLLKL HKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE
Sbjct: 89 RQTATQLLKLTHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 148
Query: 580 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 759
NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN
Sbjct: 149 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 208
Query: 760 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
SEDKGALAKLVEAIRTNYNDRY+EIRRHWGGNVLGPKSVARI TKLG
Sbjct: 209 SEDKGALAKLVEAIRTNYNDRYNEIRRHWGGNVLGPKSVARITKLEKAKAKELATKLG 266
>ref|XP_003125024.2| PREDICTED: 60S ribosomal protein L7a-like isoform 1 [Sus scrofa].
Length = 266
Score = 441 bits (1133), Expect = e-124
Identities = 222/238 (93%), Positives = 223/238 (93%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
N LFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPP INQFTQALD
Sbjct: 29 NLLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPTINQFTQALD 88
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
RQTATQLLKL HKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE
Sbjct: 89 RQTATQLLKLTHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 148
Query: 580 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 759
NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN
Sbjct: 149 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 208
Query: 760 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
SEDKGALAKLVEAIRTNYNDRY+EIRRHWGGNVLGPKSVARI TKLG
Sbjct: 209 SEDKGALAKLVEAIRTNYNDRYNEIRRHWGGNVLGPKSVARITKLEKAKAKELATKLG 266
>ref|XP_003354799.1| PREDICTED: 60S ribosomal protein L7a-like isoform 2 [Sus scrofa].
Length = 266
Score = 441 bits (1133), Expect = e-124
Identities = 222/238 (93%), Positives = 223/238 (93%)
Frame = +1
Query: 220 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 399
N LFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPP INQFTQALD
Sbjct: 29 NLLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPTINQFTQALD 88
Query: 400 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 579
RQTATQLLKL HKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE
Sbjct: 89 RQTATQLLKLTHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 148
Query: 580 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 759
NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN
Sbjct: 149 NKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN 208
Query: 760 SEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIXXXXXXXXXXXXTKLG 933
SEDKGALAKLVEAIRTNYNDRY+EIRRHWGGNVLGPKSVARI TKLG
Sbjct: 209 SEDKGALAKLVEAIRTNYNDRYNEIRRHWGGNVLGPKSVARITKLEKAKAKELATKLG 266
>ref|NP_001177156.1| NHP2 non-histone chromosome protein 2-like 1 [Sus scrofa].
Length = 128
Score = 50.4 bits (119), Expect = 2e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR G N T + ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
>ref|NP_001177155.1| NHP2 non-histone chromosome protein 2-like 1 [Sus scrofa].
Length = 128
Score = 50.4 bits (119), Expect = 2e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR G N T + ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
>ref|XP_003360438.1| PREDICTED: NHP2-like protein 1-like [Sus scrofa].
Length = 128
Score = 50.4 bits (119), Expect = 2e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 541 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 711
LR G N T + ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,960,869
Number of extensions: 947666
Number of successful extensions: 3067
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3055
Number of HSP's successfully gapped: 6
Length of query: 358
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,854,232
Effective search space: 2284391856
Effective search space used: 2284391856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000747
(1076 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1586 0.0
Sscrofa_Chr01 1158 0.0
Sscrofa_ChrX 846 0.0
Sscrofa_Chr16 100 3e-18
gb|JH118952.1| Sus scrofa unplaced genomic scaffold ChrUScaf3703 60 3e-06
>Sscrofa_Chr03
|| Length = 144787322
Score = 1586 bits (800), Expect = 0.0
Identities = 863/884 (97%)
Strand = Plus / Minus
Query: 114 ctctctcctcccgttgtccaagatgcccaaggggaagaaggccaagggcaagaaggtggc 173
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68135308 ctctctccgcccgttgtccaagatgcccaaggggaagaaggccaagggcaagaaggtggc 68135249
Query: 174 cccggcccctgccgtcgtgaagaagcaggaggccaagaaggtggtaaaccccctgtttga 233
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 68135248 cccggcccctgccgtcgtgaagaagcaggaggccaagaaggtggtaaacctcctgtttga 68135189
Query: 234 gaaaaggccgaagaattttggcatcggacaggacatccagcccaagagggacctcacccg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68135188 gaaaaggccgaagaattttggcatcggacaggacatccagcccaagagggacctcacccg 68135129
Query: 294 ttttgtcaaatggccccgctacatccggctgcagcggcaaagggccattctctataagcg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68135128 ttttgtcaaatggccccgctacatccggctgcagcggcaaagggccattctctataagcg 68135069
Query: 354 gctgaaggtgcctcccgcaattaaccagtttacccaggccttggaccgccaaacagctac 413
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68135068 gctgaaggtgcctcccacaattaaccagtttacccaggccttggaccgccaaacagctac 68135009
Query: 414 tcagctgcttaagctggcccacaagtacagaccagagacaaagcaagagaagaagcagag 473
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68135008 tcagctgcttaagctgacccacaagtacagaccagagacaaagcaagagaagaagcagag 68134949
Query: 474 gttgctggcccgagctgagaagaaggctgcaggcaaaggcgatgtccccaccaagaggcc 533
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 68134948 gttgctggcccgagctgagaagaaggctgcgggcaaaggcgatgttcccaccaagaggcc 68134889
Query: 534 gcctgtccttcgagcaggggtgaatactgtcaccaccttggtggagaacaagaaggctca 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68134888 acctgtccttcgagcaggggtgaatactgtcaccaccttggtggagaacaagaaggctca 68134829
Query: 594 gctggtggtgatcgcacacgacgtggatcccattgagctggtggtcttcctgccggccct 653
|||||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 68134828 gctggtggtgatcgcacatgatgtggatcccattgagctggtagtcttcctgccagccct 68134769
Query: 654 gtgtcggaagatgggggtcccctactgcatcatcaagggcaaggccaggctggggcggct 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68134768 gtgtcggaagatgggggtcccctactgcatcatcaagggcaaggccaggctggggcggct 68134709
Query: 714 ggtccacaggaagacctgcaccaccgtggccttcacgcaagtcaactcggaagacaaggg 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68134708 ggtccacaggaagacctgcaccaccgtggccttcacgcaagtcaactcggaagacaaggg 68134649
Query: 774 cgctctggctaagctggtggaagccatccggaccaattacaacgacagatacgacgagat 833
||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct: 68134648 tgctctggctaagctggtggaagccatccgaaccaattacaatgacagatacaacgagat 68134589
Query: 834 ccggcgtcactggggaggcaacgtcctgggtcccaagtcggtggctcgcatcgccaagct 893
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 68134588 ccggcgtcactggggaggcaacgtcctgggtcccaagtcagtggctcgcatcaccaagct 68134529
Query: 894 ggagaaggcgaaggccaaagagctggccaccaagctgggctaagtgtacaccgcggaggc 953
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 68134528 ggagaaggcgaaggccaaagaactggccaccaagctgggctaagtgtacaccgtggaggc 68134469
Query: 954 ttctgtacataaaagttattaataaaactttcagccaattacca 997
|||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 68134468 ttctgtacataaaagttattaataaaaccttcagccagttacca 68134425
>Sscrofa_Chr01
|| Length = 315321322
Score = 1158 bits (584), Expect = 0.0
Identities = 811/887 (91%), Gaps = 26/887 (2%)
Strand = Plus / Minus
Query: 129 gtccaagatgcccaaggggaagaaggccaagggcaagaaggtggccccggcccctgccgt 188
|||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||
Sbjct: 134630332 gtccaagatgcccaagggaaagaaggccaagggcaagaaggtgaccccagcccctgccgt 134630273
Query: 189 cgtgaagaagcaggaggccaagaaggtggtaaaccccctgtttgagaaaaggccgaagaa 248
||||||| |||||| |||||||||||||||||||||| ||||| |||||||||| |||||
Sbjct: 134630272 cgtgaagcagcagggggccaagaaggtggtaaacccc-tgtttaagaaaaggcccaagaa 134630214
Query: 249 ttttggcatcggacaggacatccagcccaagagggacctcacccgttttgtcaaatggcc 308
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134630213 ttttggcattggacaggacatccagcccaagagggacctcacccgttttgtcaaatggcc 134630154
Query: 309 ccgctacatccggctgcagcggcaaagggccattctctataagcggctgaaggtgcctcc 368
|||||| |||| | |||||| ||||||| ||||||||||||||| |||||||| |||||
Sbjct: 134630153 ccgctatatccagatgcagcagcaaaggtccattctctataagcaactgaaggtacctcc 134630094
Query: 369 cgcaattaaccagtttacccaggccttggaccgccaaacagctactcagctgctta---- 424
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 134630093 tgcaattaaccagtttacccaggccttggactgccaaacagctactcagctgcttacgct 134630034
Query: 425 ---------------agctggcccacaagtacagaccagagacaaagcaagagaagaagc 469
|||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 134630033 ggcccacaagtacagagctggcccacaagtacagaccggagacaaagcaagagaagaagc 134629974
Query: 470 agaggttgctggcccgagctgagaagaaggctgcaggcaaaggcgatgtccccaccaaga 529
|||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||
Sbjct: 134629973 agaggttgctggcccgagctgagaagaaggctgcgggcaaaggcgatgaacccaacaaga 134629914
Query: 530 ggccgcctgtccttcgagcaggggtgaatactgtcaccaccttggtggagaacaagaagg 589
|||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 134629913 ggccacctgttcttcgagcaggggtaaatactgtcaccaccttggtggagaataagaagg 134629854
Query: 590 ctcagctggtggtgatcgcacacgacgtggatcccattgagctggtggtcttcctgccgg 649
||||| ||||||||||| || | |||||||||||||||||||||||||||||||| |
Sbjct: 134629853 ctcagttggtggtgatcaca----atgtggatcccattgagctggtggtcttcctgccag 134629798
Query: 650 ccctgtgtcggaagatgggggtcccctactgcatcatcaagggcaaggccaggctggggc 709
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 134629797 ccctgtgtgggaagatgggggtctcctactgcatcatcaagggcaaggccaggctggggt 134629738
Query: 710 ggctggtccacaggaagacctgcaccaccgtggccttcacgcaagtcaactcggaagaca 769
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 134629737 ggctggtccacaggaagacctgtaccaccgtggccttcacgcaagtcaactcggaagcca 134629678
Query: 770 agggcgctctggctaagctggtggaagccatccggaccaattacaacgacagatacgacg 829
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 134629677 agggcgctctggctaagctggtggaagccatcaggaccaattacaatgacagatacgacg 134629618
Query: 830 agatccggcgtcactggggaggcaacgtcctgggtcccaagtcggtggctcgcatcgcca 889
||||| ||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 134629617 agatctggcatcactggggaggcaacgtcctgggtccgaagtcagtggctcgcattgcca 134629558
Query: 890 agctggagaaggcgaaggccaaagagctggccaccaagctgggctaagtgtacaccgcgg 949
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| | ||
Sbjct: 134629557 agctgga-aaggcgaaggccaaagaactggccaccaaactgggctaagtgtacactgtgg 134629499
Query: 950 aggcttctgtacataaaagttattaataaaact-ttcagccaattac 995
||| |||||||||||||||||||||| |||||| |||||||| ||||
Sbjct: 134629498 aggtttctgtacataaaagttattaacaaaactcttcagccagttac 134629452
>Sscrofa_ChrX
|| Length = 144288218
Score = 846 bits (427), Expect = 0.0
Identities = 741/842 (88%), Gaps = 4/842 (0%)
Strand = Plus / Minus
Query: 142 aaggggaagaaggccaagggcaa-gaaggtggccccggcccctgccgtcgtgaagaagca 200
|||||||||||||||||||| || ||||||||||| ||||||||| ||| ||||||||||
Sbjct: 53228316 aaggggaagaaggccaaggggaaagaaggtggccctggcccctgctgtcatgaagaagca 53228257
Query: 201 ggaggccaagaaggtggtaaaccccctgtttgagaaaaggccgaagaattttggcatcgg 260
||| ||||||||||||||||| ||||||||||||||||| || ||||||||||| || ||
Sbjct: 53228256 ggatgccaagaaggtggtaaatcccctgtttgagaaaagacccaagaattttggtattgg 53228197
Query: 261 acaggacatccagcccaagagggacctcacccgttttgt--caaatggccccgctacatc 318
|||||||||||||||||| ||| ||||||||| |||| | ||||||||||| |||| |
Sbjct: 53228196 acaggacatccagcccaaaagg-acctcacccattttttttcaaatggccccagtacacc 53228138
Query: 319 cggctgcagcggcaaagggccattctctataagcggctgaaggtgcctcccgcaattaac 378
| ||| || |||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 53228137 cagctagagtggcaaagggccattctctataaacggctaaaggtgcctcctgcaattaat 53228078
Query: 379 cagtttacccaggccttggaccgccaaacagctactcagctgcttaagctggcccacaag 438
||||||||||| | ||||||| |||||| ||||||||| |||||| |||| |||||||||
Sbjct: 53228077 cagtttacccaagacttggactgccaaatagctactcatctgcttcagctagcccacaag 53228018
Query: 439 tacagaccagagacaaagcaagagaagaagcagaggttgctggcccgagctgagaagaag 498
||| ||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 53228017 tacggaccagaaacaaagcaagggaagaagcagaggttgctggcccaagctgagaagaac 53227958
Query: 499 gctgcaggcaaaggcgatgtccccaccaagaggccgcctgtccttcgagcaggggtgaat 558
||||||||||||| |||||||||||| ||||||| |||| |||| ||||||||||||||
Sbjct: 53227957 tctgcaggcaaaggggatgtccccaccgagaggccacctggcctttgagcaggggtgaat 53227898
Query: 559 actgtcaccaccttggtggagaacaagaaggctcagctggtggtgatcgcacacgacgtg 618
| ||| |||| |||||| |||||||| ||| ||||| || |||||||| |||| ||| ||
Sbjct: 53227897 attgttaccatcttggtagagaacaaaaagcctcagttgatggtgatctcacatgacatg 53227838
Query: 619 gatcccattgagctggtggtcttcctgccggccctgtgtcggaagatgggggtcccctac 678
|||||||| ||||| |||||||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 53227837 aatcccattaagctgatggtcttcctgcaggccctgtgtcagaagatggggatcccctac 53227778
Query: 679 tgcatcatcaagggcaaggccaggctggggcggctggtccacaggaagacctgcaccacc 738
|| ||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct: 53227777 tgaatcatcaagggcaaggccaggctggggtgactggtccaccggaagacctgcaccacc 53227718
Query: 739 gtggccttcacgcaagtcaactcggaagacaagggcgctctggctaagctggtggaagcc 798
|||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct: 53227717 atggccttcacacaagtcaactcagaagacaagggcgctgtggctaaactggtggaagcc 53227658
Query: 799 atccggaccaattacaacgacagatacgacgagatccggcgtcactggggaggcaacgtc 858
||| ||||||||||||| ||||||||| ||||||||| || ||||||||||||||| |||
Sbjct: 53227657 atcaggaccaattacaatgacagatacaacgagatccagcatcactggggaggcaaggtc 53227598
Query: 859 ctgggtcccaagtcggtggctcgcatcgccaagctggagaaggcgaaggccaaagagctg 918
|||||| | || | || | |||| ||||||||||| ||||| ||||| ||||| |||
Sbjct: 53227597 ctgggttcaaaattagtaaattgcattgccaagctggaaaaggcaaaggctaaagaactg 53227538
Query: 919 gccaccaagctgggctaagtgtacaccgcggaggcttctgtacataaaagttattaataa 978
|||||||| |||||||||||||||| ||| ||||||||| |||||||||||||||
Sbjct: 53227537 gccaccaaactgggctaagtgtacattattgagttttctgtacaaaaaagttattaataa 53227478
Query: 979 aa 980
||
Sbjct: 53227477 aa 53227476
>Sscrofa_Chr16
|| Length = 86898991
Score = 99.6 bits (50), Expect = 3e-18
Identities = 200/246 (81%), Gaps = 3/246 (1%)
Strand = Plus / Minus
Query: 694 aaggccaggctggggcggctggtccacaggaagacctgcaccaccgtggccttcacgcaa 753
|||||||||||||| | || ||||||| |||| ||||||||| || |||||| ||||
Sbjct: 17082540 aaggccaggctgggccatctagtccacaacaagaactgcaccactgtcaccttcatgcaa 17082481
Query: 754 gtcaactcggaagacaagggcgctctggctaagctggtggaagccatccggaccaattac 813
|| | || ||| |||| || ||||||| ||||||||||||||| ||| ||||||||||
Sbjct: 17082480 gtttattcagaatacaaaggggctctggttaagctggtggaagctatcaggaccaattat 17082421
Query: 814 aacgacagatacgacgagatccggcgtcactggg-gaggcaacgtcctgggtcccaagtc 872
|| |||||||| || ||| ||| | |||||||| |||| | || |||||||| || |
Sbjct: 17082420 aaggacagatatgatgaggtcc-ccatcactgggagagg-tatgttctgggtccaaaatt 17082363
Query: 873 ggtggctcgcatcgccaagctggagaaggcgaaggccaaagagctggccaccaagctggg 932
|||||||| ||| |||||||||| || || |||| |||||| ||||||||||| |||||
Sbjct: 17082362 ggtggctcacattaccaagctggaaaaagcaaagggcaaagaactggccaccaaactggg 17082303
Query: 933 ctaagt 938
||||||
Sbjct: 17082302 ctaagt 17082297
>gb|JH118952.1| Sus scrofa unplaced genomic scaffold ChrUScaf3703
Length = 49834
Score = 60.0 bits (30), Expect = 3e-06
Identities = 84/102 (82%)
Strand = Plus / Plus
Query: 868 aagtcggtggctcgcatcgccaagctggagaaggcgaaggccaaagagctggccaccaag 927
||||||||||||| ||| ||||| ||| |||| ||||| ||||| |||||||||||
Sbjct: 5554 aagtcggtggctctcattgccaaaggggaaaaggtaaaggctaaagaactggccaccaaa 5613
Query: 928 ctgggctaagtgtacaccgcggaggcttctgtacataaaagt 969
||| ||||||||||||| | || ||||||||||||||||
Sbjct: 5614 ctgagctaagtgtacactactgaattttctgtacataaaagt 5655
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,285,590
Number of extensions: 163
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 8
Length of query: 1076
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1055
Effective length of database: 2,808,413,156
Effective search space: 2962875879580
Effective search space used: 2962875879580
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)