Animal-Genome cDNA 20110601C-000756

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000756
         (1062 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776960.1| elongation factor 1-alpha 1 [Bos taurus].            550   e-157
Alignment   gi|XP_001249988.1| PREDICTED: eukaryotic translation elongation...   548   e-156
Alignment   gi|XP_002707888.1| PREDICTED: eukaryotic translation elongation...   542   e-154
Alignment   gi|XP_001789118.1| PREDICTED: eukaryotic translation elongation...   534   e-152
Alignment   gi|XP_002689033.1| PREDICTED: eukaryotic translation elongation...   531   e-151
Alignment   gi|XP_001251588.1| PREDICTED: eukaryotic translation elongation...   531   e-151
Alignment   gi|XP_002697322.1| PREDICTED: eukaryotic translation elongation...   518   e-147
Alignment   gi|XP_002702894.1| PREDICTED: eukaryotic translation elongation...   518   e-147
Alignment   gi|NP_001032541.1| elongation factor 1-alpha 2 [Bos taurus].         518   e-147
Alignment   gi|XP_002689070.1| PREDICTED: eukaryotic translation elongation...   514   e-146

>ref|NP_776960.1| elongation factor 1-alpha 1 [Bos taurus].
          Length = 462

 Score =  550 bits (1417), Expect = e-157
 Identities = 284/330 (86%), Positives = 292/330 (88%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDGNASGTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVGRVETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDVRRGNVAGDSK 330


>ref|XP_001249988.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1 isoform
            1 [Bos taurus].
          Length = 462

 Score =  548 bits (1411), Expect = e-156
 Identities = 283/330 (85%), Positives = 291/330 (88%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSAN PWF+GWKVTRKDGNASGTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNMLEPSANKPWFKGWKVTRKDGNASGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVGRVETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDVRRGNVAGDSK 330


>ref|XP_002707888.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1-like
            [Bos taurus].
          Length = 461

 Score =  542 bits (1397), Expect = e-154
 Identities = 279/330 (84%), Positives = 290/330 (87%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVA VP+SGW+GDNMLEPSANMPWF+GWKVTRKDGNASGT LLEALDCIL PTR
Sbjct: 181  IGYNPDTVASVPVSGWSGDNMLEPSANMPWFKGWKVTRKDGNASGTPLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   D+YKIGGIGTVPVGRVETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDIYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDVRRGNVAGNSK 330


>ref|XP_001789118.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1 isoform
            1 [Bos taurus].
          Length = 461

 Score =  534 bits (1375), Expect = e-152
 Identities = 277/330 (83%), Positives = 287/330 (86%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTH+NIV IGHVDSGKST TGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHMNIV-IGHVDSGKSTPTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 59

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 60   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 119

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLI+GVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 120  GEFEAGISKNGQTREHALLAYTLGVKQLILGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 179

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDGNASGT LLEALDCIL PTR
Sbjct: 180  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTPLLEALDCILPPTR 239

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQSGT-TESQSVECHMKL*V 971
            P  +PLRL+  DVYKIGGIGTVPVGRVETGV K     T       TE +SVE H +   
Sbjct: 240  PTDKPLRLSLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVITEVKSVEMHHEALS 299

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  R GNVA  +K
Sbjct: 300  EALPGDNVGFNVKNVSVKDVRHGNVAGDSK 329


>ref|XP_002689033.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1-like
            [Bos taurus].
          Length = 462

 Score =  531 bits (1368), Expect = e-151
 Identities = 276/330 (83%), Positives = 286/330 (86%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINI+VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAA+MGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIIVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAKMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            +KLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA V
Sbjct: 61   NKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAAV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDN LEPSANMPWF+G KVT KDGNASGTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNTLEPSANMPWFKGRKVTHKDGNASGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGT PVGRVETGV K     T    S TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTGPVGRVETGVLKPGMVVTFAPVSVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNV   +K
Sbjct: 301  EALPGDNVGFNIKNVSVKDVRRGNVVGDSK 330


>ref|XP_001251588.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1 isoform
            1 [Bos taurus].
          Length = 462

 Score =  531 bits (1368), Expect = e-151
 Identities = 276/330 (83%), Positives = 286/330 (86%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINI+VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAA+MGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIIVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAKMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            +KLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA V
Sbjct: 61   NKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAAV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDN LEPSANMPWF+G KVT KDGNASGTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNTLEPSANMPWFKGRKVTHKDGNASGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGT PVGRVETGV K     T    S TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTGPVGRVETGVLKPGMVVTFAPVSVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNV   +K
Sbjct: 301  EALPGDNVGFNIKNVSVKDVRRGNVVGDSK 330


>ref|XP_002697322.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1-like
            [Bos taurus].
          Length = 462

 Score =  518 bits (1335), Expect = e-147
 Identities = 268/330 (81%), Positives = 281/330 (85%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVV GH+DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAA+MGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVTGHIDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAKMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA GV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAVGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEA ISKN QTREHALLAYTLGVKQLIVGVNKMDSTEPPYS+KRYEEIVKEVSTYIKK
Sbjct: 121  GEFEASISKNRQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSRKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVA VP+SGWN DN+L  SANMPWF+GWKVTRKDGNASGT LLEALDCIL PTR
Sbjct: 181  IGYNPDTVACVPVSGWNADNVLGTSANMPWFKGWKVTRKDGNASGTPLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVG VETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGHVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +   RGNVA  +K
Sbjct: 301  EALHGDNVGFNVKNVSVKDVHRGNVAGDSK 330


>ref|XP_002702894.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1 [Bos
            taurus].
          Length = 462

 Score =  518 bits (1335), Expect = e-147
 Identities = 268/330 (81%), Positives = 281/330 (85%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVV GH+DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAA+MGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVTGHIDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAKMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA GV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAVGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEA ISKN QTREHALLAYTLGVKQLIVGVNKMDSTEPPYS+KRYEEIVKEVSTYIKK
Sbjct: 121  GEFEASISKNRQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSRKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVA VP+SGWN DN+L  SANMPWF+GWKVTRKDGNASGT LLEALDCIL PTR
Sbjct: 181  IGYNPDTVACVPVSGWNADNVLGTSANMPWFKGWKVTRKDGNASGTPLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVG VETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGHVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +   RGNVA  +K
Sbjct: 301  EALHGDNVGFNVKNVSVKDVHRGNVAGDSK 330


>ref|NP_001032541.1| elongation factor 1-alpha 2 [Bos taurus].
          Length = 463

 Score =  518 bits (1334), Expect = e-147
 Identities = 266/330 (80%), Positives = 282/330 (85%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP YS+KRY+EIVKEVS YIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNP TV FVPISGW+GDNMLEPS NMPWF+GWKV RK+GNASG +LLEALD IL PTR
Sbjct: 181  IGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQSG-TTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVGRVETG+ +     T      TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNV   +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDIRRGNVCGDSK 330


>ref|XP_002689070.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1-like
            [Bos taurus].
          Length = 460

 Score =  514 bits (1324), Expect = e-146
 Identities = 269/330 (81%), Positives = 282/330 (85%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTH+NIV IGHVDSGKST TGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHMNIV-IGHVDSGKSTPTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 59

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA+LIVAAGV
Sbjct: 60   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCALLIVAAGV 119

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEA I KN QT EHA LAYTLGV+QLI+GVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 120  GEFEASICKNEQTHEHAHLAYTLGVQQLILGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 179

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGD+MLEPSANMPWF+G KVTRKDGNASGTTLLEALDCIL PTR
Sbjct: 180  IGYNPDTVAFVPISGWNGDDMLEPSANMPWFKGRKVTRKDGNASGTTLLEALDCILPPTR 239

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQSGT-TESQSVECHMKL*V 971
            P  +PLRL+  DVYKIGGIGTVPVGRVETGV K     T       TE +SVE H +   
Sbjct: 240  PTDKPLRLSLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVITEVKSVEMHHEALS 299

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  R GNVA  +K
Sbjct: 300  EALPGDNVGFNVKNVSVKDVRHGNVAGDSK 329


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,450,602
Number of extensions: 1207397
Number of successful extensions: 3514
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 3452
Number of HSP's successfully gapped: 26
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000756
         (1062 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_850407.1| PREDICTED: similar to eukaryotic translation el...   550   e-157
Alignment   gi|NP_001184045.1| elongation factor 1-alpha 1 [Canis lupus fam...   550   e-157
Alignment   gi|XP_854325.1| PREDICTED: similar to eukaryotic translation el...   546   e-155
Alignment   gi|XP_851304.1| PREDICTED: similar to eukaryotic translation el...   543   e-154
Alignment   gi|XP_852028.1| PREDICTED: similar to eukaryotic translation el...   537   e-153
Alignment   gi|XP_850937.1| PREDICTED: similar to eukaryotic translation el...   530   e-151
Alignment   gi|XP_849749.1| PREDICTED: similar to eukaryotic translation el...   528   e-150
Alignment   gi|XP_848715.1| PREDICTED: similar to eukaryotic translation el...   528   e-150
Alignment   gi|XP_851967.1| PREDICTED: similar to eukaryotic translation el...   526   e-149
Alignment   gi|XP_851320.1| PREDICTED: similar to eukaryotic translation el...   521   e-148

>ref|XP_850407.1| PREDICTED: similar to eukaryotic translation elongation factor 1
            alpha 1 [Canis familiaris].
          Length = 462

 Score =  550 bits (1417), Expect = e-157
 Identities = 284/330 (86%), Positives = 292/330 (88%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDGNASGTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVGRVETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDVRRGNVAGDSK 330


>ref|NP_001184045.1| elongation factor 1-alpha 1 [Canis lupus familiaris].
          Length = 462

 Score =  550 bits (1417), Expect = e-157
 Identities = 284/330 (86%), Positives = 292/330 (88%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDGNASGTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVGRVETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDVRRGNVAGDSK 330


>ref|XP_854325.1| PREDICTED: similar to eukaryotic translation elongation factor 1
            alpha 1 [Canis familiaris].
          Length = 346

 Score =  546 bits (1406), Expect = e-155
 Identities = 282/330 (85%), Positives = 291/330 (88%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAE ERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAECERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDGNA+GTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNATGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVGRVETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDVRRGNVAGDSK 330


>ref|XP_851304.1| PREDICTED: similar to eukaryotic translation elongation factor 1
            alpha 1 [Canis familiaris].
          Length = 462

 Score =  543 bits (1399), Expect = e-154
 Identities = 280/330 (84%), Positives = 291/330 (88%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQT EHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEI+KEVSTYIKK
Sbjct: 121  GEFEAGISKNGQTCEHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIIKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDGNASGTTLLEALDCIL PT 
Sbjct: 181  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTH 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVGRVETGV K     T+   + TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTVAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRG+VA  +K
Sbjct: 301  EALPGDNLGFDVKNVSVKDVRRGSVAGDSK 330


>ref|XP_852028.1| PREDICTED: similar to eukaryotic translation elongation factor 1
            alpha 1 [Canis familiaris].
          Length = 374

 Score =  537 bits (1383), Expect = e-153
 Identities = 279/330 (84%), Positives = 287/330 (86%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKE THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEMTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DK KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIK MITGTSQADCAVLIVAAGV
Sbjct: 61   DKPKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKIMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GE EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 121  GELEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDGNASGTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLR    DVYKIGGIGTVPVGRVETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLRQPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDVRRGNVAGDSK 330


>ref|XP_850937.1| PREDICTED: similar to eukaryotic translation elongation factor 1
            alpha 1 [Canis familiaris].
          Length = 459

 Score =  530 bits (1366), Expect = e-151
 Identities = 272/315 (86%), Positives = 278/315 (88%), Gaps = 1/315 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKST TGHLIYK  GI+KRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTPTGHLIYKYDGINKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV AGV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVTAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDGNASGTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PL L   DVYKIGGIGTVPVGRVETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLHLPLQDVYKIGGIGTVPVGRVETGVFKPGMVVTFAPVNVTTEVKSVEVHHEALS 300

Query: 972  KPFLGDTWAFMSKRV 1016
            K   GD   F  K V
Sbjct: 301  KALPGDNVGFNVKNV 315


>ref|XP_849749.1| PREDICTED: similar to eukaryotic translation elongation factor 1
            alpha 1 [Canis familiaris].
          Length = 462

 Score =  528 bits (1359), Expect = e-150
 Identities = 274/330 (83%), Positives = 285/330 (86%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINI+VIG VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIIVIGLVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGI KNGQTREHALLAYTLGVKQLIVGVNKMDSTE PYSQKRYEEI+KEVSTYIKK
Sbjct: 121  GEFEAGIFKNGQTREHALLAYTLGVKQLIVGVNKMDSTELPYSQKRYEEIIKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNP+TVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDGNA GTTLLEALDCIL PT 
Sbjct: 181  IGYNPNTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNAGGTTLLEALDCILPPTL 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PL L   DVYKIGGIGTVPVGRVETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLCLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  R GNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDVRHGNVAGDSK 330


>ref|XP_848715.1| PREDICTED: similar to eukaryotic translation elongation factor 1
            alpha 1 isoform 2 [Canis familiaris].
          Length = 343

 Score =  528 bits (1359), Expect = e-150
 Identities = 276/330 (83%), Positives = 285/330 (86%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHV SGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVHSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA V
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAADV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTE PYSQKRYEEIVKEVSTYI K
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEQPYSQKRYEEIVKEVSTYIMK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSANMPWF+G KVTRKDGNASGTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGRKVTRKDGNASGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PL L   DVYKIGGIGTVPVGR+ETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLCLPLQDVYKIGGIGTVPVGRMETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +   RGNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDVHRGNVAGDSK 330


>ref|XP_851967.1| PREDICTED: similar to eukaryotic translation elongation factor 1
            alpha 1 [Canis familiaris].
          Length = 370

 Score =  526 bits (1354), Expect = e-149
 Identities = 272/330 (82%), Positives = 285/330 (86%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI+KFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIKKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISL KFETSKYYVTIIDAPGHRDFIKN+ITGT Q DCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLCKFETSKYYVTIIDAPGHRDFIKNIITGTPQDDCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQ RYEEIVKEVST+IKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQNRYEEIVKEVSTHIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDGNASGTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PL L   D+YKIGGIGTVPVGRVET + K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLCLPLQDIYKIGGIGTVPVGRVETSILKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  R GNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDVRHGNVAGDSK 330


>ref|XP_851320.1| PREDICTED: similar to eukaryotic translation elongation factor 1
            alpha 1 [Canis familiaris].
          Length = 461

 Score =  521 bits (1343), Expect = e-148
 Identities = 273/326 (83%), Positives = 282/326 (86%), Gaps = 2/326 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKE THINIV IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKENTHINIV-IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 59

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITID SLWKFETSKYYVTII+APGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 60   DKLKAERERGITIDSSLWKFETSKYYVTIIEAPGHRDFIKNMITGTSQADCAVLIVAAGV 119

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 120  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 179

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            I YNPDTVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDGNASGTTLLEALDCIL PTR
Sbjct: 180  ISYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTR 239

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PL L   DVYKIGGIGTVPVGRVET V K     T    + TTE +SVE H +   
Sbjct: 240  PTDKPLCLPLQDVYKIGGIGTVPVGRVETDVLKPDMVVTFAPVNVTTEVKSVEMHHEALS 299

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVA 1046
            +    D      K V  +  RRGN+A
Sbjct: 300  EALPEDNVGVNVKNVSVKDVRRGNMA 325


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,316,005
Number of extensions: 1239218
Number of successful extensions: 3938
Number of sequences better than 1.0e-05: 153
Number of HSP's gapped: 3752
Number of HSP's successfully gapped: 180
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000756
         (1062 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001393.1| elongation factor 1-alpha 1 [Homo sapiens].          550   e-157
Alignment   gi|NP_001949.1| elongation factor 1-alpha 2 [Homo sapiens].          518   e-147
Alignment   gi|NP_006611.1| HBS1-like protein isoform 1 [Homo sapiens].          244   1e-64
Alignment   gi|NP_001138630.1| HBS1-like protein isoform 2 [Homo sapiens].       244   1e-64
Alignment   gi|NP_001123479.1| eukaryotic peptide chain release factor GTP-...   225   6e-59
Alignment   gi|NP_001123478.1| eukaryotic peptide chain release factor GTP-...   225   6e-59
Alignment   gi|NP_002085.2| eukaryotic peptide chain release factor GTP-bin...   225   6e-59
Alignment   gi|NP_060564.2| eukaryotic peptide chain release factor GTP-bin...   220   2e-57
Alignment   gi|NP_003312.3| elongation factor Tu, mitochondrial precursor [...   118   8e-27
Alignment   gi|NP_068746.2| translation factor GUF1, mitochondrial [Homo sa...    63   4e-10

>ref|NP_001393.1| elongation factor 1-alpha 1 [Homo sapiens].
          Length = 462

 Score =  550 bits (1417), Expect = e-157
 Identities = 284/330 (86%), Positives = 292/330 (88%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDGNASGTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVGRVETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDVRRGNVAGDSK 330


>ref|NP_001949.1| elongation factor 1-alpha 2 [Homo sapiens].
          Length = 463

 Score =  518 bits (1334), Expect = e-147
 Identities = 266/330 (80%), Positives = 282/330 (85%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP YS+KRY+EIVKEVS YIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNP TV FVPISGW+GDNMLEPS NMPWF+GWKV RK+GNASG +LLEALD IL PTR
Sbjct: 181  IGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQSG-TTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVGRVETG+ +     T      TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNV   +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDIRRGNVCGDSK 330


>ref|NP_006611.1| HBS1-like protein isoform 1 [Homo sapiens].
          Length = 684

 Score =  244 bits (622), Expect = 1e-64
 Identities = 125/266 (46%), Positives = 172/266 (64%)
 Frame = +3

Query: 87   KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLK 266
            K  +N+VVIGHVD+GKST  GH++Y  G I+KRT+ K+E+E+ + GK SF YAWVLD+  
Sbjct: 258  KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETG 317

Query: 267  AERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFE 446
             ERERG+T+D+ + KFET+   +T++DAPGH+DFI NMITG +QAD AVL+V A  GEFE
Sbjct: 318  EERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFE 377

Query: 447  AGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYN 626
            AG    GQTREH LL  +LGV QL V VNKMD     + Q+R++EI  ++  ++K+ G+ 
Sbjct: 378  AGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVN--WQQERFQEITGKLGHFLKQAGFK 435

Query: 627  PDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTRPN*Q 806
               V F+P SG +G+N++  S +    + +K         G  LLE +D    P R   +
Sbjct: 436  ESDVGFIPTSGLSGENLITRSQSSELTKWYK---------GLCLLEQIDSFKPPQRSIDK 486

Query: 807  PLRLAPPDVYKIGGIGTVPVGRVETG 884
            P RL   DV+K  G G    G++E G
Sbjct: 487  PFRLCVSDVFKDQGSGFCITGKIEAG 512


>ref|NP_001138630.1| HBS1-like protein isoform 2 [Homo sapiens].
          Length = 642

 Score =  244 bits (622), Expect = 1e-64
 Identities = 125/266 (46%), Positives = 172/266 (64%)
 Frame = +3

Query: 87  KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLK 266
           K  +N+VVIGHVD+GKST  GH++Y  G I+KRT+ K+E+E+ + GK SF YAWVLD+  
Sbjct: 216 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETG 275

Query: 267 AERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFE 446
            ERERG+T+D+ + KFET+   +T++DAPGH+DFI NMITG +QAD AVL+V A  GEFE
Sbjct: 276 EERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFE 335

Query: 447 AGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYN 626
           AG    GQTREH LL  +LGV QL V VNKMD     + Q+R++EI  ++  ++K+ G+ 
Sbjct: 336 AGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVN--WQQERFQEITGKLGHFLKQAGFK 393

Query: 627 PDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTRPN*Q 806
              V F+P SG +G+N++  S +    + +K         G  LLE +D    P R   +
Sbjct: 394 ESDVGFIPTSGLSGENLITRSQSSELTKWYK---------GLCLLEQIDSFKPPQRSIDK 444

Query: 807 PLRLAPPDVYKIGGIGTVPVGRVETG 884
           P RL   DV+K  G G    G++E G
Sbjct: 445 PFRLCVSDVFKDQGSGFCITGKIEAG 470


>ref|NP_001123479.1| eukaryotic peptide chain release factor GTP-binding subunit ERF3A
           isoform 3 [Homo sapiens].
          Length = 499

 Score =  225 bits (573), Expect = 6e-59
 Identities = 119/268 (44%), Positives = 169/268 (63%), Gaps = 1/268 (0%)
 Frame = +3

Query: 84  EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 263
           +K H+N+V IGHVD+GKST  G ++Y  G +DKRT+EK+E+EA E  + ++  +W LD  
Sbjct: 71  KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 130

Query: 264 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 443
           + ER++G T+++    FET K + TI+DAPGH+ F+ NMI G SQAD AVL+++A  GEF
Sbjct: 131 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 190

Query: 444 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 623
           E G  K GQTREHA+LA T GVK LIV +NKMD     +S +RYEE  +++  ++KK+G+
Sbjct: 191 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 250

Query: 624 NP-DTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTRPN 800
           NP   + F+P SG  G N+ E S   PW+             G   +  LD +    R  
Sbjct: 251 NPKKDIHFMPCSGLTGANLKEQSDFCPWY------------IGLPFIPYLDNLPNFNRSV 298

Query: 801 *QPLRLAPPDVYKIGGIGTVPVGRVETG 884
             P+RL   D YK   +GTV +G++E+G
Sbjct: 299 DGPIRLPIVDKYK--DMGTVVLGKLESG 324


>ref|NP_001123478.1| eukaryotic peptide chain release factor GTP-binding subunit ERF3A
           isoform 2 [Homo sapiens].
          Length = 636

 Score =  225 bits (573), Expect = 6e-59
 Identities = 119/268 (44%), Positives = 169/268 (63%), Gaps = 1/268 (0%)
 Frame = +3

Query: 84  EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 263
           +K H+N+V IGHVD+GKST  G ++Y  G +DKRT+EK+E+EA E  + ++  +W LD  
Sbjct: 208 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 267

Query: 264 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 443
           + ER++G T+++    FET K + TI+DAPGH+ F+ NMI G SQAD AVL+++A  GEF
Sbjct: 268 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 327

Query: 444 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 623
           E G  K GQTREHA+LA T GVK LIV +NKMD     +S +RYEE  +++  ++KK+G+
Sbjct: 328 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 387

Query: 624 NP-DTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTRPN 800
           NP   + F+P SG  G N+ E S   PW+             G   +  LD +    R  
Sbjct: 388 NPKKDIHFMPCSGLTGANLKEQSDFCPWY------------IGLPFIPYLDNLPNFNRSV 435

Query: 801 *QPLRLAPPDVYKIGGIGTVPVGRVETG 884
             P+RL   D YK   +GTV +G++E+G
Sbjct: 436 DGPIRLPIVDKYK--DMGTVVLGKLESG 461


>ref|NP_002085.2| eukaryotic peptide chain release factor GTP-binding subunit ERF3A
           isoform 1 [Homo sapiens].
          Length = 637

 Score =  225 bits (573), Expect = 6e-59
 Identities = 119/268 (44%), Positives = 169/268 (63%), Gaps = 1/268 (0%)
 Frame = +3

Query: 84  EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 263
           +K H+N+V IGHVD+GKST  G ++Y  G +DKRT+EK+E+EA E  + ++  +W LD  
Sbjct: 209 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 268

Query: 264 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 443
           + ER++G T+++    FET K + TI+DAPGH+ F+ NMI G SQAD AVL+++A  GEF
Sbjct: 269 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 328

Query: 444 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 623
           E G  K GQTREHA+LA T GVK LIV +NKMD     +S +RYEE  +++  ++KK+G+
Sbjct: 329 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 388

Query: 624 NP-DTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTRPN 800
           NP   + F+P SG  G N+ E S   PW+             G   +  LD +    R  
Sbjct: 389 NPKKDIHFMPCSGLTGANLKEQSDFCPWY------------IGLPFIPYLDNLPNFNRSV 436

Query: 801 *QPLRLAPPDVYKIGGIGTVPVGRVETG 884
             P+RL   D YK   +GTV +G++E+G
Sbjct: 437 DGPIRLPIVDKYK--DMGTVVLGKLESG 462


>ref|NP_060564.2| eukaryotic peptide chain release factor GTP-binding subunit ERF3B
           [Homo sapiens].
          Length = 628

 Score =  220 bits (560), Expect = 2e-57
 Identities = 116/268 (43%), Positives = 170/268 (63%), Gaps = 1/268 (0%)
 Frame = +3

Query: 84  EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 263
           +K H+N+V IGHVD+GKST  G +++  G +DKRT+EK+E+EA E  + ++  +W LD  
Sbjct: 200 KKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 259

Query: 264 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 443
           + ER++G T+++    FET + + TI+DAPGH+ F+ NMI G SQAD AVL+++A  GEF
Sbjct: 260 QEERDKGKTVEVGRAYFETERKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 319

Query: 444 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 623
           E G  K GQTREHA+LA T GVK LIV +NKMD     +S +RYEE  +++  ++KK+G+
Sbjct: 320 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSIERYEECKEKLVPFLKKVGF 379

Query: 624 NP-DTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTRPN 800
           +P   + F+P SG  G N+ E S   PW+            +G   +  LD +    R  
Sbjct: 380 SPKKDIHFMPCSGLTGANIKEQSDFCPWY------------TGLPFIPYLDNLPNFNRSI 427

Query: 801 *QPLRLAPPDVYKIGGIGTVPVGRVETG 884
             P+RL   D YK   +GTV +G++E+G
Sbjct: 428 DGPIRLPIVDKYK--DMGTVVLGKLESG 453


>ref|NP_003312.3| elongation factor Tu, mitochondrial precursor [Homo sapiens].
          Length = 455

 Score =  118 bits (296), Expect = 8e-27
 Identities = 88/272 (32%), Positives = 127/272 (46%), Gaps = 1/272 (0%)
 Frame = +3

Query: 81  KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDK 260
           ++K H+N+  IGHVD GK+T T  +                K  AE G   FK    +D 
Sbjct: 56  RDKPHVNVGTIGHVDHGKTTLTAAIT---------------KILAEGGGAKFKKYEEIDN 100

Query: 261 LKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGE 440
              ER RGITI+ +  ++ T+  +    D PGH D++KNMITGT+  D  +L+VAA  G 
Sbjct: 101 APEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP 160

Query: 441 FEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIG 620
                    QTREH LLA  +GV+ ++V VNK D+ +     +  E +  E+   + + G
Sbjct: 161 MP-------QTREHLLLARQIGVEHVVVYVNKADAVQ---DSEMVELVELEIRELLTEFG 210

Query: 621 YNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDC-ILTPTRP 797
           Y  +    +  S        +P        G K  +K        LL+A+D  I  P R 
Sbjct: 211 YKGEETPVIVGSALCALEGRDPEL------GLKSVQK--------LLDAVDTYIPVPARD 256

Query: 798 N*QPLRLAPPDVYKIGGIGTVPVGRVETGVSK 893
             +P  L    VY + G GTV  G +E G+ K
Sbjct: 257 LEKPFLLPVEAVYSVPGRGTVVTGTLERGILK 288


>ref|NP_068746.2| translation factor GUF1, mitochondrial [Homo sapiens].
          Length = 669

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 10/190 (5%)
 Frame = +3

Query: 99  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERE 278
           N  ++ HVD GKST    L+   G IDK    K                 VLDKL+ ERE
Sbjct: 70  NFSIVAHVDHGKSTLADRLLELTGTIDKTKNNK----------------QVLDKLQVERE 113

Query: 279 RGITIDIS----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFE 446
           RGIT+        +  E  +Y + +ID PGH DF   +    S     +L+V A  G   
Sbjct: 114 RGITVKAQTASLFYNCEGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEG--- 170

Query: 447 AGISKNGQTREHALLAYTLGVKQLIVGVNKMD--STEPPYSQKRYEEIV----KEVSTYI 608
                  QT  +  LA+   +  + V +NK+D  + +P   + + E++      E     
Sbjct: 171 ----IQAQTVANFFLAFEAQLSVIPV-INKIDLKNADPERVENQIEKVFDIPSDECIKIS 225

Query: 609 KKIGYNPDTV 638
            K+G N ++V
Sbjct: 226 AKLGTNVESV 235


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,604,032
Number of extensions: 1228640
Number of successful extensions: 3565
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3521
Number of HSP's successfully gapped: 17
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000756
         (1062 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034236.2| elongation factor 1-alpha 1 [Mus musculus].          548   e-156
Alignment   gi|NP_031932.1| elongation factor 1-alpha 2 [Mus musculus].          518   e-147
Alignment   gi|NP_001036058.1| HBS1-like protein isoform 2 [Mus musculus].       243   1e-64
Alignment   gi|NP_062676.2| HBS1-like protein isoform 1 [Mus musculus].          243   1e-64
Alignment   gi|NP_001123480.1| eukaryotic peptide chain release factor GTP-...   225   5e-59
Alignment   gi|NP_666178.2| eukaryotic peptide chain release factor GTP-bin...   225   5e-59
Alignment   gi|NP_032205.2| eukaryotic peptide chain release factor GTP-bin...   222   4e-58
Alignment   gi|NP_001157185.1| elongation factor Tu, mitochondrial isoform ...   122   5e-28
Alignment   gi|NP_766333.1| elongation factor Tu, mitochondrial isoform 1 [...   122   5e-28
Alignment   gi|NP_766299.1| translation factor Guf1, mitochondrial [Mus mus...    67   3e-11

>ref|NP_034236.2| elongation factor 1-alpha 1 [Mus musculus].
          Length = 462

 Score =  548 bits (1412), Expect = e-156
 Identities = 283/330 (85%), Positives = 292/330 (88%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDG+ASGTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGSASGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVGRVETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDVRRGNVAGDSK 330


>ref|NP_031932.1| elongation factor 1-alpha 2 [Mus musculus].
          Length = 463

 Score =  518 bits (1334), Expect = e-147
 Identities = 266/330 (80%), Positives = 282/330 (85%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP YS+KRY+EIVKEVS YIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNP TV FVPISGW+GDNMLEPS NMPWF+GWKV RK+GNASG +LLEALD IL PTR
Sbjct: 181  IGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQSG-TTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVGRVETG+ +     T      TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNV   +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDIRRGNVCGDSK 330


>ref|NP_001036058.1| HBS1-like protein isoform 2 [Mus musculus].
          Length = 679

 Score =  243 bits (621), Expect = 1e-64
 Identities = 125/266 (46%), Positives = 171/266 (64%)
 Frame = +3

Query: 87   KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLK 266
            K  +N+VVIGHVD+GKST  GH++Y  G ++KRT+ K+E+E+ + GK SF YAWVLD+  
Sbjct: 253  KQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETG 312

Query: 267  AERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFE 446
             ERERG+T+D+ + KFET+   +T++DAPGH+DFI NMITG +QAD AVL+V A  GEFE
Sbjct: 313  EERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFE 372

Query: 447  AGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYN 626
            AG    GQTREH LL  +LGV QL V VNKMD     + Q+R++EI  ++  ++K+ G+ 
Sbjct: 373  AGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVN--WQQERFQEITGKLGHFLKQAGFK 430

Query: 627  PDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTRPN*Q 806
               VAF+P SG +G+N+   S +      +K         G  LLE +D    P R   +
Sbjct: 431  ESDVAFIPTSGLSGENLTARSQSSDLTTWYK---------GMCLLEQIDSFKPPQRSIDK 481

Query: 807  PLRLAPPDVYKIGGIGTVPVGRVETG 884
            P RL   DV+K  G G    G++E G
Sbjct: 482  PFRLCVSDVFKDQGSGFCVTGKIEAG 507


>ref|NP_062676.2| HBS1-like protein isoform 1 [Mus musculus].
          Length = 682

 Score =  243 bits (621), Expect = 1e-64
 Identities = 125/266 (46%), Positives = 171/266 (64%)
 Frame = +3

Query: 87   KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLK 266
            K  +N+VVIGHVD+GKST  GH++Y  G ++KRT+ K+E+E+ + GK SF YAWVLD+  
Sbjct: 256  KQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETG 315

Query: 267  AERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFE 446
             ERERG+T+D+ + KFET+   +T++DAPGH+DFI NMITG +QAD AVL+V A  GEFE
Sbjct: 316  EERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFE 375

Query: 447  AGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYN 626
            AG    GQTREH LL  +LGV QL V VNKMD     + Q+R++EI  ++  ++K+ G+ 
Sbjct: 376  AGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVN--WQQERFQEITGKLGHFLKQAGFK 433

Query: 627  PDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTRPN*Q 806
               VAF+P SG +G+N+   S +      +K         G  LLE +D    P R   +
Sbjct: 434  ESDVAFIPTSGLSGENLTARSQSSDLTTWYK---------GMCLLEQIDSFKPPQRSIDK 484

Query: 807  PLRLAPPDVYKIGGIGTVPVGRVETG 884
            P RL   DV+K  G G    G++E G
Sbjct: 485  PFRLCVSDVFKDQGSGFCVTGKIEAG 510


>ref|NP_001123480.1| eukaryotic peptide chain release factor GTP-binding subunit ERF3A
           isoform 2 [Mus musculus].
          Length = 635

 Score =  225 bits (573), Expect = 5e-59
 Identities = 119/268 (44%), Positives = 169/268 (63%), Gaps = 1/268 (0%)
 Frame = +3

Query: 84  EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 263
           +K H+N+V IGHVD+GKST  G ++Y  G +DKRT+EK+E+EA E  + ++  +W LD  
Sbjct: 207 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 266

Query: 264 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 443
           + ER++G T+++    FET K + TI+DAPGH+ F+ NMI G SQAD AVL+++A  GEF
Sbjct: 267 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 326

Query: 444 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 623
           E G  K GQTREHA+LA T GVK LIV +NKMD     +S +RYEE  +++  ++KK+G+
Sbjct: 327 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 386

Query: 624 NP-DTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTRPN 800
           NP   + F+P SG  G N+ E S   PW+             G   +  LD +    R  
Sbjct: 387 NPKKDIHFMPCSGLTGANLKEQSDFCPWY------------IGLPFIPYLDNLPNFNRSV 434

Query: 801 *QPLRLAPPDVYKIGGIGTVPVGRVETG 884
             P+RL   D YK   +GTV +G++E+G
Sbjct: 435 DGPIRLPIVDKYK--DMGTVVLGKLESG 460


>ref|NP_666178.2| eukaryotic peptide chain release factor GTP-binding subunit ERF3A
           isoform 1 [Mus musculus].
          Length = 636

 Score =  225 bits (573), Expect = 5e-59
 Identities = 119/268 (44%), Positives = 169/268 (63%), Gaps = 1/268 (0%)
 Frame = +3

Query: 84  EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 263
           +K H+N+V IGHVD+GKST  G ++Y  G +DKRT+EK+E+EA E  + ++  +W LD  
Sbjct: 208 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 267

Query: 264 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 443
           + ER++G T+++    FET K + TI+DAPGH+ F+ NMI G SQAD AVL+++A  GEF
Sbjct: 268 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 327

Query: 444 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 623
           E G  K GQTREHA+LA T GVK LIV +NKMD     +S +RYEE  +++  ++KK+G+
Sbjct: 328 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 387

Query: 624 NP-DTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTRPN 800
           NP   + F+P SG  G N+ E S   PW+             G   +  LD +    R  
Sbjct: 388 NPKKDIHFMPCSGLTGANLKEQSDFCPWY------------IGLPFIPYLDNLPNFNRSV 435

Query: 801 *QPLRLAPPDVYKIGGIGTVPVGRVETG 884
             P+RL   D YK   +GTV +G++E+G
Sbjct: 436 DGPIRLPIVDKYK--DMGTVVLGKLESG 461


>ref|NP_032205.2| eukaryotic peptide chain release factor GTP-binding subunit ERF3B
           [Mus musculus].
          Length = 632

 Score =  222 bits (565), Expect = 4e-58
 Identities = 116/268 (43%), Positives = 170/268 (63%), Gaps = 1/268 (0%)
 Frame = +3

Query: 84  EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 263
           +K H+N+V IGHVD+GKST  G +++  G +D+RT+EK+E+EA E  + ++  +W LD  
Sbjct: 204 KKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTN 263

Query: 264 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 443
           + ER++G T+++    FET K + TI+DAPGH+ F+ NMI G SQAD AVL+++A  GEF
Sbjct: 264 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 323

Query: 444 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 623
           E G  K GQTREHA+LA T GVK LIV +NKMD     +S +RYEE  +++  ++KK+G+
Sbjct: 324 ETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGF 383

Query: 624 NP-DTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTRPN 800
           +P   + F+P SG  G N+ E S   PW+            +G   +  LD +    R  
Sbjct: 384 SPKKDIHFMPCSGLTGANIKEQSDFCPWY------------TGLPFIPYLDSLPNFNRSI 431

Query: 801 *QPLRLAPPDVYKIGGIGTVPVGRVETG 884
             P+RL   D YK   +GTV +G++E+G
Sbjct: 432 DGPIRLPIVDKYK--DMGTVVLGKLESG 457


>ref|NP_001157185.1| elongation factor Tu, mitochondrial isoform 2 [Mus musculus].
          Length = 435

 Score =  122 bits (306), Expect = 5e-28
 Identities = 89/272 (32%), Positives = 126/272 (46%), Gaps = 1/272 (0%)
 Frame = +3

Query: 81  KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDK 260
           ++K H+N+  IGHVD GK+T T  +                K  AE G   FK    +D 
Sbjct: 53  RDKPHVNVGTIGHVDHGKTTLTAAIT---------------KILAEGGGAKFKKYEEIDN 97

Query: 261 LKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGE 440
              ER RGITI+ +  ++ T+  +    D PGH D++KNMITGT+  D  +L+VAA  G 
Sbjct: 98  APEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP 157

Query: 441 FEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIG 620
                    QTREH LLA  +GV+ ++V VNK D+ +     +  E +  E+   + + G
Sbjct: 158 MP-------QTREHLLLAKQIGVEHVVVYVNKADAVQ---DSEMVELVELEIRELLTEFG 207

Query: 621 YNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDC-ILTPTRP 797
           Y  +    +  S        +P                G  S   LL+A+D  I  PTR 
Sbjct: 208 YKGEETPVIVGSALCALEQRDPEL--------------GVKSVQKLLDAVDTYIPVPTRD 253

Query: 798 N*QPLRLAPPDVYKIGGIGTVPVGRVETGVSK 893
             +P  L    VY I G GTV  G +E G+ K
Sbjct: 254 LDKPFLLPVESVYSIPGRGTVVTGTLERGILK 285


>ref|NP_766333.1| elongation factor Tu, mitochondrial isoform 1 [Mus musculus].
          Length = 452

 Score =  122 bits (306), Expect = 5e-28
 Identities = 89/272 (32%), Positives = 126/272 (46%), Gaps = 1/272 (0%)
 Frame = +3

Query: 81  KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDK 260
           ++K H+N+  IGHVD GK+T T  +                K  AE G   FK    +D 
Sbjct: 53  RDKPHVNVGTIGHVDHGKTTLTAAIT---------------KILAEGGGAKFKKYEEIDN 97

Query: 261 LKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGE 440
              ER RGITI+ +  ++ T+  +    D PGH D++KNMITGT+  D  +L+VAA  G 
Sbjct: 98  APEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP 157

Query: 441 FEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIG 620
                    QTREH LLA  +GV+ ++V VNK D+ +     +  E +  E+   + + G
Sbjct: 158 MP-------QTREHLLLAKQIGVEHVVVYVNKADAVQ---DSEMVELVELEIRELLTEFG 207

Query: 621 YNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDC-ILTPTRP 797
           Y  +    +  S        +P                G  S   LL+A+D  I  PTR 
Sbjct: 208 YKGEETPVIVGSALCALEQRDPEL--------------GVKSVQKLLDAVDTYIPVPTRD 253

Query: 798 N*QPLRLAPPDVYKIGGIGTVPVGRVETGVSK 893
             +P  L    VY I G GTV  G +E G+ K
Sbjct: 254 LDKPFLLPVESVYSIPGRGTVVTGTLERGILK 285


>ref|NP_766299.1| translation factor Guf1, mitochondrial [Mus musculus].
          Length = 651

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 10/190 (5%)
 Frame = +3

Query: 99  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERE 278
           N  +I HVD GKST    L+   G IDK                + K   VLDKL+ ERE
Sbjct: 52  NFSIIAHVDHGKSTLADRLLELTGTIDK----------------TKKNKQVLDKLQVERE 95

Query: 279 RGITIDIS----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFE 446
           RGIT+        + F   +Y + +ID PGH DF   +    S     +L+V A  G   
Sbjct: 96  RGITVKAQTASLFYSFGGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEG--- 152

Query: 447 AGISKNGQTREHALLAYTLGVKQLIVGVNKMD--STEPPYSQKRYEEIV----KEVSTYI 608
                  QT  +  LA+   +  + V +NK+D  + +P    K+ E++     +E     
Sbjct: 153 ----IQAQTVANFFLAFEAQLSVIPV-INKIDLKNADPERVGKQIEKVFDIPSEECIKIS 207

Query: 609 KKIGYNPDTV 638
            K+G N D+V
Sbjct: 208 AKLGTNVDSV 217


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,916,539
Number of extensions: 1035273
Number of successful extensions: 3051
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3006
Number of HSP's successfully gapped: 17
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000756
         (1062 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001090887.1| elongation factor 1-alpha 1 [Sus scrofa].         550   e-157
Alignment   gi|XP_003129826.1| PREDICTED: elongation factor 1-alpha, oocyte...   511   e-145
Alignment   gi|XP_003135149.1| PREDICTED: eukaryotic peptide chain release ...   221   4e-58
Alignment   gi|XP_003124639.2| PREDICTED: eukaryotic peptide chain release ...   215   4e-56
Alignment   gi|XP_003124563.1| PREDICTED: elongation factor Tu, mitochondri...   123   2e-28
Alignment   gi|XP_003353256.1| PREDICTED: HBS1-like protein [Sus scrofa].         85   8e-17
Alignment   gi|XP_003128999.1| PREDICTED: translation factor GUF1, mitochon...    65   8e-11
Alignment   gi|XP_003123750.1| PREDICTED: ribosome-releasing factor 2, mito...    60   2e-09
Alignment   gi|XP_003358691.1| PREDICTED: elongation factor G, mitochondria...    58   8e-09
Alignment   gi|XP_003354050.1| PREDICTED: elongation factor 2 [Sus scrofa].       55   7e-08

>ref|NP_001090887.1| elongation factor 1-alpha 1 [Sus scrofa].
          Length = 462

 Score =  550 bits (1417), Expect = e-157
 Identities = 284/330 (86%), Positives = 292/330 (88%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNPDTVAFVPISGWNGDNMLEPSANMPWF+GWKVTRKDGNASGTTLLEALDCIL PTR
Sbjct: 181  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQ-SGTTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVGRVETGV K     T    + TTE +SVE H +   
Sbjct: 241  PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDVRRGNVAGDSK 330


>ref|XP_003129826.1| PREDICTED: elongation factor 1-alpha, oocyte form-like [Sus scrofa].
          Length = 461

 Score =  511 bits (1316), Expect = e-145
 Identities = 263/330 (79%), Positives = 280/330 (84%), Gaps = 2/330 (0%)
 Frame = +3

Query: 75   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 254
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
Sbjct: 1    MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 255  DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 434
            DKLKAERERGITIDISLWKFETSKYY+TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
Sbjct: 61   DKLKAERERGITIDISLWKFETSKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120

Query: 435  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 614
            GEFEAGISKNGQTREHALLA+TLGVKQLIV VNKMDSTEP +S  R++EI KEVS YIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAFTLGVKQLIVAVNKMDSTEPAFSAARFQEITKEVSNYIKK 180

Query: 615  IGYNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTR 794
            IGYNP +VAFVPISGW+GDNMLEPS NMPWF+GWKV RK+GNA+G TLLEALD IL PTR
Sbjct: 181  IGYNPASVAFVPISGWHGDNMLEPSTNMPWFKGWKVERKEGNATGVTLLEALDSILPPTR 240

Query: 795  PN*QPLRLAPPDVYKIGGIGTVPVGRVETGVSKLAWWSTLLQSG-TTESQSVECHMKL*V 971
            P  +PLRL   DVYKIGGIGTVPVGRVETG  K     T   +  TTE +SVE H +   
Sbjct: 241  PVNKPLRLPLQDVYKIGGIGTVPVGRVETGFLKAGMVVTFAPNNVTTEVKSVEMHHEALA 300

Query: 972  KPFLGDTWAFMSKRVCQRR-RRGNVAVTAK 1058
            +   GD   F  K V  +  RRGNVA  +K
Sbjct: 301  EALPGDNVGFNVKNVSVKDIRRGNVAGDSK 330


>ref|XP_003135149.1| PREDICTED: eukaryotic peptide chain release factor GTP-binding
           subunit ERF3B-like [Sus scrofa].
          Length = 632

 Score =  221 bits (564), Expect = 4e-58
 Identities = 117/268 (43%), Positives = 170/268 (63%), Gaps = 1/268 (0%)
 Frame = +3

Query: 84  EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 263
           +K H+N+V IGHVD+GKST  G +++  G +DKRT+EK+E+EA E  + ++  +W LD  
Sbjct: 204 KKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 263

Query: 264 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 443
           + ER++G T+++    FET K + TI+DAPGH+ F+ NMI G SQAD AVL+++A  GEF
Sbjct: 264 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 323

Query: 444 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 623
           E G  K GQTREHA+LA T GVK LIV +NKMD     +S +RYEE  +++  ++KK+G+
Sbjct: 324 ETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVNWSSERYEECKEKLVPFLKKVGF 383

Query: 624 NP-DTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTRPN 800
           +P   + F+P SG  G N+ E S   PW+            +G   +  LD +    R  
Sbjct: 384 SPKKDIHFMPCSGLTGANIKEQSDFCPWY------------TGLPFIPYLDNMPNFNRSI 431

Query: 801 *QPLRLAPPDVYKIGGIGTVPVGRVETG 884
             P+RL   D YK   +GTV +G++E+G
Sbjct: 432 DGPIRLPIVDKYK--DMGTVVLGKLESG 457


>ref|XP_003124639.2| PREDICTED: eukaryotic peptide chain release factor GTP-binding
           subunit ERF3A-like [Sus scrofa].
          Length = 561

 Score =  215 bits (547), Expect = 4e-56
 Identities = 116/268 (43%), Positives = 165/268 (61%), Gaps = 1/268 (0%)
 Frame = +3

Query: 84  EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 263
           +K H+N+V IGHVD+GKST  G ++Y  G +DKRT+EK+E+EA E  + ++         
Sbjct: 133 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWXXXXXXXTN 192

Query: 264 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 443
           + ER++G T+++    FET K + TI+DAPGH+ F+ NMI G SQAD AVL+++A  GEF
Sbjct: 193 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 252

Query: 444 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 623
           E G  K GQTREHA+LA T GVK LIV +NKMD     +S +RYEE  +++  ++KK+G+
Sbjct: 253 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 312

Query: 624 NP-DTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDCILTPTRPN 800
           NP   + F+P SG  G N+ E S   PW+             G   +  LD +    R  
Sbjct: 313 NPKKDIHFMPCSGLTGANLKEQSDFCPWY------------IGLPFIPYLDNLPNFNRSV 360

Query: 801 *QPLRLAPPDVYKIGGIGTVPVGRVETG 884
             P+RL   D YK   +GTV +G++E+G
Sbjct: 361 DGPIRLPIVDKYK--DMGTVVLGKLESG 386


>ref|XP_003124563.1| PREDICTED: elongation factor Tu, mitochondrial-like [Sus scrofa].
          Length = 452

 Score =  123 bits (309), Expect = 2e-28
 Identities = 90/272 (33%), Positives = 128/272 (47%), Gaps = 1/272 (0%)
 Frame = +3

Query: 81  KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDK 260
           ++K H+N+  IGHVD GK+T T  +                K  AE G   FK    +D 
Sbjct: 53  RDKPHVNVGTIGHVDHGKTTLTAAIT---------------KILAEGGGAKFKKYEEIDN 97

Query: 261 LKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGE 440
              ER RGITI+ +  ++ T+  +    D PGH D++KNMITGT+  D  +L+VAA  G 
Sbjct: 98  APEERARGITINAAHVEYSTANRHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP 157

Query: 441 FEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIG 620
                    QTREH LLA  +GV+ ++V VNK D+ +     +  E +  E+   + + G
Sbjct: 158 MP-------QTREHLLLAKQIGVEHVVVYVNKADAVQ---DSEMVELVELEIRELLTEFG 207

Query: 621 YNPDTVAFVPISGWNGDNMLEPSANMPWFQGWKVTRKDGNASGTTLLEALDC-ILTPTRP 797
           Y  +    +  S        +P        G K  +K        LL+A+D  I  PTR 
Sbjct: 208 YKGEETPIIVGSALCALEQRDPEL------GLKSVQK--------LLDAVDTYIPVPTRD 253

Query: 798 N*QPLRLAPPDVYKIGGIGTVPVGRVETGVSK 893
             +P  L    VY I G GTV  G +E G+ K
Sbjct: 254 LEKPFLLPVESVYSIPGRGTVVTGTLERGILK 285


>ref|XP_003353256.1| PREDICTED: HBS1-like protein [Sus scrofa].
          Length = 159

 Score = 84.7 bits (208), Expect = 8e-17
 Identities = 38/65 (58%), Positives = 50/65 (76%)
 Frame = +3

Query: 87  KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLK 266
           K  +N+VVIGHVD+GKST  GHL+Y  G ++KRT+ K+E+E+ + GK SF YAWVLD+  
Sbjct: 95  KQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETG 154

Query: 267 AERER 281
            ERER
Sbjct: 155 EERER 159


>ref|XP_003128999.1| PREDICTED: translation factor GUF1, mitochondrial [Sus scrofa].
          Length = 669

 Score = 64.7 bits (156), Expect = 8e-11
 Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 10/190 (5%)
 Frame = +3

Query: 99  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERE 278
           N  +I HVD GKST     +   G IDK    K                 VLDKL+ ERE
Sbjct: 70  NFSIIAHVDHGKSTLADRFLELTGAIDKTKNNK----------------QVLDKLQVERE 113

Query: 279 RGITIDIS----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFE 446
           RGIT+        +  E  +Y + +ID PGH DF   +    S     +L+V A  G   
Sbjct: 114 RGITVKAQTASLFYNCEGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEG--- 170

Query: 447 AGISKNGQTREHALLAYTLGVKQLIVGVNKMD--STEPPYSQKRYEEIV----KEVSTYI 608
                  QT  +  LA+   +  + V +NK+D  + +P   +K+ E++      E     
Sbjct: 171 ----IQAQTVANFFLAFEAQLSVIPV-INKIDLKNADPERVEKQIEKVFDIPSDECIKIS 225

Query: 609 KKIGYNPDTV 638
            K+G N ++V
Sbjct: 226 AKLGTNVESV 235


>ref|XP_003123750.1| PREDICTED: ribosome-releasing factor 2, mitochondrial-like [Sus
           scrofa].
          Length = 776

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 44/150 (29%), Positives = 67/150 (44%)
 Frame = +3

Query: 99  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERE 278
           NI ++ H+D+GK+TTT  ++Y  G         + +   ++  G      V D +  ERE
Sbjct: 71  NIGIMAHIDAGKTTTTERILYYSG---------YTRSLGDVDDGDT----VTDFMAQERE 117

Query: 279 RGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGIS 458
           RGITI  +   F+   Y + +ID PGH DF   +       D AV +  A  G     ++
Sbjct: 118 RGITIQSAAVTFDWKGYRINLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLT 177

Query: 459 KNGQTREHALLAYTLGVKQLIVGVNKMDST 548
              Q  +H +          I  +NKMD T
Sbjct: 178 VWRQADKHKI--------PRICFLNKMDKT 199


>ref|XP_003358691.1| PREDICTED: elongation factor G, mitochondrial-like [Sus scrofa].
          Length = 754

 Score = 58.2 bits (139), Expect = 8e-09
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
 Frame = +3

Query: 99  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERE 278
           NI +  H+DSGK+T T  ++Y  G      I K  +   + G G+     V+D ++ ER+
Sbjct: 52  NIGISAHIDSGKTTLTERVLYYTG-----RIAKMHEVKGKDGVGA-----VMDSMELERQ 101

Query: 279 RGITID----ISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFE 446
           RGITI      +LWK       + IID PGH DF   +       D A+L++ A  G   
Sbjct: 102 RGITIQSAATYTLWK----DVNINIIDTPGHVDFTIEVERALRVLDGAILVLCAVGGVQC 157

Query: 447 AGISKNGQTREHALLAYTLGVKQLIVGVNKMD 542
             ++ N Q + +++   T         +NK+D
Sbjct: 158 QTMTVNRQMQRYSVPFLTF--------INKLD 181


>ref|XP_003354050.1| PREDICTED: elongation factor 2 [Sus scrofa].
          Length = 858

 Score = 55.1 bits (131), Expect = 7e-08
 Identities = 67/247 (27%), Positives = 101/247 (40%), Gaps = 26/247 (10%)
 Frame = +3

Query: 69  AKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 248
           A M K+    N+ VI HVD GKST T  L+ K G I           +A  G+  F    
Sbjct: 11  AIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGII----------ASARAGETRF---- 56

Query: 249 VLDKLKAERERGITID---ISLW-------------KFETSKYYVTIIDAPGHRDFIKNM 380
             D  K E+ER ITI    ISL+               + S + + +ID+PGH DF   +
Sbjct: 57  -TDTRKDEQERCITIKSTAISLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEV 115

Query: 381 ITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMD------ 542
                  D A+++V     +  +G+    +T     +A  +   + ++ +NKMD      
Sbjct: 116 TAALRVTDGALVVV-----DCVSGVCVQTETVLRQAIAERI---KPVLMMNKMDRALLEL 167

Query: 543 STEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWF----Q 710
             EP    + ++ IV+ V+  I   G           SG  G+ M++P      F     
Sbjct: 168 QLEPEELYQTFQRIVENVNVIISTYGEGE--------SGPMGNIMIDPVLGTVGFGSGLH 219

Query: 711 GWKVTRK 731
           GW  T K
Sbjct: 220 GWAFTLK 226


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,955,721
Number of extensions: 771252
Number of successful extensions: 2200
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2176
Number of HSP's successfully gapped: 12
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000756
         (1062 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                         795   0.0  
Sscrofa_Chr15                                                         678   0.0  
Sscrofa_Chr01                                                         593   e-167
Sscrofa_Chr12                                                         446   e-122
Sscrofa_Chr09                                                         426   e-116
Sscrofa_Chr06                                                         238   5e-60
Sscrofa_Chr02                                                         226   2e-56
Sscrofa_Chr07                                                         188   4e-45
Sscrofa_Chr13                                                         172   3e-40
Sscrofa_Chr08                                                         165   6e-38

>Sscrofa_Chr04 
||          Length = 143465943

 Score =  795 bits (401), Expect = 0.0
 Identities = 669/758 (88%), Gaps = 19/758 (2%)
 Strand = Plus / Plus

                                                                            
Query: 31       aggacacaggtgtcgtgaaagccatcgctaaaagctaagcaaaaatgggaaaggagaaga 90
                |||||| ||||||| ||||| ||||| |||||| ||||||||||||||||||||||||| 
Sbjct: 97802695 aggacataggtgtcatgaaaaccatcactaaaacctaagcaaaaatgggaaaggagaagc 97802754

                                                                            
Query: 91       ctcacatcaacatcgtcgtcatcggacacgtcgattcgggcaagtccaccactactggcc 150
                 ||||| |||||  ||| |||| ||||||| |||||| ||| |||| |||||||| || |
Sbjct: 97802755 ttcacaccaacactgtcatcattggacacgccgattcaggcgagtctaccactaccggtc 97802814

                                                                            
Query: 151      atctgatctacaaatgcggtgggatcgacaaaagaaccatcgaaaagttcgaaaaagagg 210
                |||||||||||| |||| ||||||||||| ||||||||||        |||| ||| || 
Sbjct: 97802815 atctgatctacagatgctgtgggatcgaccaaagaaccat--------tcgataaacagc 97802866

                                                                            
Query: 211      ctgcggag----at------gggaaagggctccttcaagtatgcctgggtcttggacaaa 260
                ||||  ||    ||      ||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 97802867 ctgccaaggggaatcctcgaggggaagggctccttcaagtacgcctgggtcttggacaaa 97802926

                                                                            
Query: 261      ctaaaggctgaacgtgagcgtggtattaccattgacatctccctgtggaaattcgagacc 320
                || ||||||||||  ||| ||||||||||| ||||| |||| |||||||||||| ||| |
Sbjct: 97802927 ctgaaggctgaacacgagtgtggtattacctttgacgtctctctgtggaaattcaagaac 97802986

                                                                            
Query: 321      agcaagtactacgtgaccatcattgatgctccaggacacagagactttattaagaacatg 380
                ||||||| ||||||||||||| | |||||||||||||||||||||||||||||  |||||
Sbjct: 97802987 agcaagttctacgtgaccatcgtcgatgctccaggacacagagactttattaaagacatg 97803046

                                                                            
Query: 381      attacaggcacttcccaggctgactgtgctgtcctgattgttgctgctggtgttggtgaa 440
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97803047 attacaggcacttaccaggctgactgtgctgtcctgattgttgctgctggtgttggtgaa 97803106

                                                                            
Query: 441      ttcgaagcaggtatttccaagaacgggcagacccgtgagcatgctcttctggcctacacc 500
                ||| |||| ||||||||||||||| |||||| | ||||||||||| ||||||||||||||
Sbjct: 97803107 ttcaaagccggtatttccaagaacaggcagatctgtgagcatgcttttctggcctacacc 97803166

                                                                            
Query: 501      ctgggtgtgaaacagctcattgttggcgttaacaaaatggattccactgagccaccctac 560
                |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 97803167 ctgggtgtgaaacaactcattgttggtgttaacaaaatggattccactgagccaccctac 97803226

                                                                            
Query: 561      agccagaagagatatgaagagattgtaaaggaagtcagcacctacattaagaaaattggc 620
                |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 97803227 agccagaagagatacgaggagattgttaaggaagtcagcacctacattaagaaaattggc 97803286

                                                                            
Query: 621      tacaaccctgatacagtagcatttgtgccaatttctggctggaatggtgacaacatgctg 680
                |  || ||| ||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 97803287 tgtaatcctaatacagtagtatttgtgcccatttctggctagaatggtgacaacatgctg 97803346

                                                                            
Query: 681      gagccaagtgctaatatgccttggttccagggatggaaagtcacccgtaaagatggcaat 740
                |||||||||||||| ||||||| || | ||||||||||||||||| ||||||||| ||| 
Sbjct: 97803347 gagccaagtgctaacatgcctt-gtccaagggatggaaagtcacctgtaaagatgacaaa 97803405

                                                      
Query: 741      gccagtggaaccacactgcttgaagctctggattgcat 778
                |||||| ||||||| ||||||||||||||| |||||||
Sbjct: 97803406 gccagtagaaccacgctgcttgaagctctgaattgcat 97803443



 Score =  351 bits (177), Expect = 5e-94
 Identities = 306/349 (87%)
 Strand = Plus / Minus

                                                                             
Query: 394       cccaggctgactgtgctgtcctgattgttgctgctggtgttggtgaattcgaagcaggta 453
                 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||  | |
Sbjct: 119619056 cccaggctgactgtgctgtcctgattgttgctgctggtgttggtgaacttgaagccagga 119618997

                                                                             
Query: 454       tttccaagaacgggcagacccgtgagcatgctcttctggcctacaccctgggtgtgaaac 513
                 ||||||| || |||||||||| ||   || | |||||||| || ||  | ||||||||||
Sbjct: 119618996 tttccaacaatgggcagacccatggatatacccttctggcttaaactgtaggtgtgaaac 119618937

                                                                             
Query: 514       agctcattgttggcgttaacaaaatggattccactgagccaccctacagccagaagagat 573
                 | || |||||||| ||||||| |||||||||||| || |||||||| | |||||||||| 
Sbjct: 119618936 aactaattgttggagttaacacaatggattccaccgaaccaccctatacccagaagagag 119618877

                                                                             
Query: 574       atgaagagattgtaaaggaagtcagcacctacattaagaaaattggctacaaccctgata 633
                 ||||  | ||||| |||||||||||||||||||||||||||| ||||||||||||  | |
Sbjct: 119618876 atgacaaaattgttaaggaagtcagcacctacattaagaaaactggctacaaccccaaca 119618817

                                                                             
Query: 634       cagtagcatttgtgccaatttctggctggaatggtgacaacatgctggagccaagtgcta 693
                 |||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 119618816 cagtagcatttgcgccaatttctggatggaatggtgacaacatactggagccaagtgcta 119618757

                                                                  
Query: 694       atatgccttggttccagggatggaaagtcacccgtaaagatggcaatgc 742
                 | |||||||||||| |||||||||| |||| | ||||||||||||||||
Sbjct: 119618756 acatgccttggttcaagggatggaaggtcagctgtaaagatggcaatgc 119618708


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  678 bits (342), Expect = 0.0
 Identities = 644/740 (87%), Gaps = 6/740 (0%)
 Strand = Plus / Minus

                                                                            
Query: 42       gtcgtgaaagccatcgctaaaagctaagcaaaaatgggaaaggagaagactcacatcaac 101
                ||||||||| ||||| |||||| | ||||||||| ||||| |||||||||| ||||||||
Sbjct: 28342932 gtcgtgaaaaccatctctaaaacccaagcaaaaacgggaatggagaagacttacatcaac 28342873

                                                                            
Query: 102      atcgtcgtcatcggacacgtcgattcgggcaagtccaccactactggccatctgatctac 161
                ||||| ||||  ||||| |  |||| |||||||||   |||| |||||||||||||||||
Sbjct: 28342872 atcgttgtcactggacatgcagatttgggcaagtctgtcactcctggccatctgatctac 28342813

                                                                            
Query: 162      aaatgcggt---gggatcgacaaaagaaccatcgaaaagttcgaaaaagaggctgcggag 218
                |||||  ||   ||||| || || ||||||||||||||||| ||||||||||||||  ||
Sbjct: 28342812 aaatgttgttgtgggattgataagagaaccatcgaaaagtttgaaaaagaggctgccaag 28342753

                                                                            
Query: 219      atgggaaagggctccttcaagtatgcctgggtcttggacaaactaaaggctgaacgtgag 278
                |||||||||||||||||||||||||||||| ||||||||||||| ||  |||||| ||||
Sbjct: 28342752 atgggaaagggctccttcaagtatgcctgg-tcttggacaaactcaaatctgaacatgag 28342694

                                                                            
Query: 279      cgtggtattaccattgacatctccctgtggaaattcgagaccagcaagtactacgtgacc 338
                | || |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||  
Sbjct: 28342693 cttgatattaccattgatatctccctgtggaaatttgagaccagcaagtactatgtgatg 28342634

                                                                            
Query: 339      atcattgatgctccaggacacagagactttattaagaacatgattacaggcacttcccag 398
                |||||| |||| ||||| || ||| |||||||||| |||||||| ||||||||  |||||
Sbjct: 28342633 atcattaatgccccagggcagagaaactttattaaaaacatgatgacaggcacaccccag 28342574

                                                                            
Query: 399      gctgactgtgctgtcctgattgttgctgctggtgttggtgaattcgaagcaggtatttcc 458
                 |||  | | |||||||| ||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 28342573 cctggttatcctgtcctgtttgttgctgctggtgttggtgaatttgaagcaggtatttc- 28342515

                                                                            
Query: 459      aagaacgggcagacccgtgagcatgctcttctggcctacaccctgggtgtgaaacagctc 518
                | ||| ||||||||| ||||||| || || | ||| ||||| |||| | ||||||| |  
Sbjct: 28342514 atgaatgggcagacctgtgagcaagccctcc-ggcttacactctggatatgaaacaacca 28342456

                                                                            
Query: 519      attgttggcgttaacaaaatggattccactgagccaccctacagccagaagagatatgaa 578
                |||||||  ||||||||||||| || ||||||||| |||| |||||||||||||||||| 
Sbjct: 28342455 attgttgcagttaacaaaatgggtttcactgagccgccctgcagccagaagagatatgag 28342396

                                                                            
Query: 579      gagattgtaaaggaagtcagcacctacattaagaaaattggctacaaccctgatacagta 638
                || ||||| ||||||||||||||||||||||||||| |||||| ||   |||| |  |||
Sbjct: 28342395 gaaattgttaaggaagtcagcacctacattaagaaagttggctgcagtactgacatggta 28342336

                                                                            
Query: 639      gcatttgtgccaatttctggctggaatggtgacaacatgctggagccaagtgctaatatg 698
                | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28342335 gaatttgtgccaatttctggctggaatggtgacaacatgctggagccaagtgctaatatg 28342276

                                                                            
Query: 699      ccttggttccagggatggaaagtcacccgtaaagatggcaatgccagtggaaccacactg 758
                ||||||||  ||||||||||| || ||| ||||||||||||||||||||||||||| |||
Sbjct: 28342275 ccttggtttaagggatggaaattcgcccataaagatggcaatgccagtggaaccacgctg 28342216

                                    
Query: 759      cttgaagctctggattgcat 778
                ||||||||||||||||||||
Sbjct: 28342215 cttgaagctctggattgcat 28342196



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 61/69 (88%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                             
Query: 956       catgaagctttgagtgaagcccttcctgggggacacgtgggcttttatgtcaa-aacgtg 1014
                 |||||||||||||||||||| |||||||||||    ||||||||  ||||||| ||||||
Sbjct: 112016112 catgaagctttgagtgaagctcttcctgggggcattgtgggcttcaatgtcaagaacgtg 112016171

                          
Query: 1015      tctgtcaaa 1023
                 |||||||||
Sbjct: 112016172 tctgtcaaa 112016180


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  593 bits (299), Expect = e-167
 Identities = 299/299 (100%)
 Strand = Plus / Plus

                                                                             
Query: 397       aggctgactgtgctgtcctgattgttgctgctggtgttggtgaattcgaagcaggtattt 456
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103476180 aggctgactgtgctgtcctgattgttgctgctggtgttggtgaattcgaagcaggtattt 103476239

                                                                             
Query: 457       ccaagaacgggcagacccgtgagcatgctcttctggcctacaccctgggtgtgaaacagc 516
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103476240 ccaagaacgggcagacccgtgagcatgctcttctggcctacaccctgggtgtgaaacagc 103476299

                                                                             
Query: 517       tcattgttggcgttaacaaaatggattccactgagccaccctacagccagaagagatatg 576
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103476300 tcattgttggcgttaacaaaatggattccactgagccaccctacagccagaagagatatg 103476359

                                                                             
Query: 577       aagagattgtaaaggaagtcagcacctacattaagaaaattggctacaaccctgatacag 636
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103476360 aagagattgtaaaggaagtcagcacctacattaagaaaattggctacaaccctgatacag 103476419

                                                                            
Query: 637       tagcatttgtgccaatttctggctggaatggtgacaacatgctggagccaagtgctaat 695
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103476420 tagcatttgtgccaatttctggctggaatggtgacaacatgctggagccaagtgctaat 103476478



 Score =  486 bits (245), Expect = e-134
 Identities = 613/730 (83%), Gaps = 8/730 (1%)
 Strand = Plus / Minus

                                                                             
Query: 71        aaaaatgggaaaggagaagactcacatcaacatcgtcgtcatcggacacgtcgattcggg 130
                 |||||||||||||||||||| ||| |||||  |  | ||||| ||||| || | || | |
Sbjct: 119677154 aaaaatgggaaaggagaagattcatatcaatgttattgtcattggacatgtagttt-gag 119677096

                                                                             
Query: 131       caagtccaccactactggccatctgatctacaaatgcggtgggatcgacaaaagaaccat 190
                  ||||| ||||||||||||||||||||||||||||| |||| |||| ||||||| ||| |
Sbjct: 119677095 aaagtctaccactactggccatctgatctacaaatgtggtgagatcaacaaaaggaccgt 119677036

                                                                             
Query: 191       cgaaaagttcgaaaaagaggctgcggagatgggaaagggctccttcaagtatgcctgggt 250
                 | ||||||| ||  | |||||||| ||||| | |||||| |||   ||||||||||||||
Sbjct: 119677035 caaaaagtttgaggaggaggctgctgagattgcaaagggttcc---aagtatgcctgggt 119676979

                                                                             
Query: 251       cttggacaaactaaaggctgaacgtgagcgtggtattaccattgacatctccctgtggaa 310
                 |||||||||||| || | ||||| |||| ||| |||| ||||||| |||||||||| |||
Sbjct: 119676978 cttggacaaactgaaagttgaacctgagtgtgttatttccattgatatctccctgtagaa 119676919

                                                                             
Query: 311       attcgagaccagcaagtactacgtgaccatcattgatgctccaggacacagagactttat 370
                 |||  |||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||
Sbjct: 119676918 attaaagaccagcaagtactatgtgaccatcgttgatgccccaggacacagagactt-at 119676860

                                                                             
Query: 371       taagaacatgattacaggcacttcccaggctgactgtgctgtcctgattgttgctgctgg 430
                 ||| | ||||||||||||||| |||| || ||  |||  | |||||||| ||||||||||
Sbjct: 119676859 taaaagcatgattacaggcacatcccgggatggttgtcgtttcctgattattgctgctgg 119676800

                                                                             
Query: 431       tgttggtgaattcgaagcaggtatttccaagaacgggcagacccgtgagcatgctcttct 490
                 |||||||||||| |||||| |||| |||||||| | || || || ||||||||| |||||
Sbjct: 119676799 tgttggtgaatttgaagcaagtatctccaagaatgagctgatccatgagcatgcccttct 119676740

                                                                             
Query: 491       ggcctacaccctgggtgtgaaacagctcattgttggcgttaacaaaatggattccactga 550
                 ||| ||||| |||||||||||||| || | ||||||  ||||| || |||||||||||||
Sbjct: 119676739 ggcttacactctgggtgtgaaacaactaactgttggaattaaccaagtggattccactga 119676680

                                                                             
Query: 551       gccaccctacagccagaagagatatgaagagattgtaaaggaagtcagcacctaca--tt 608
                 ||| ||| ||||||| ||||| |  || || ||||| |||||||| |||||||| |  ||
Sbjct: 119676679 gccccccaacagccaaaagagctgagaggaaattgttaaggaagttagcacctatatttt 119676620

                                                                             
Query: 609       aagaaaattggctacaaccctgatacagtagcatttgtgccaatttctggctggaatggt 668
                    |||| |||||| || |   | |||||||||||||||||||||| |||||||||||||
Sbjct: 119676619 ttaaaaagtggctataatctcaacacagtagcatttgtgccaatttttggctggaatggt 119676560

                                                                             
Query: 669       gacaacatgctggagccaagtgctaatatgccttggttccagggatggaaagtcacccgt 728
                 |||||||||||| ||||||||||| | |||||||||||| ||||||||||| |||||| |
Sbjct: 119676559 gacaacatgctgaagccaagtgctgacatgccttggttcaagggatggaaattcacccat 119676500

                                                                             
Query: 729       aaagatggcaatgccagtggaaccacactgcttgaagctctggattgcattttaacacca 788
                 ||| ||||||||||| || ||||||   || ||||||||||||||||||| ||  |||||
Sbjct: 119676499 aaa-atggcaatgccggtagaaccatgttgtttgaagctctggattgcatcttgccacca 119676441

                           
Query: 789       actcgtccaa 798
                 ||| ||||||
Sbjct: 119676440 acttgtccaa 119676431



 Score =  363 bits (183), Expect = 1e-97
 Identities = 183/183 (100%)
 Strand = Plus / Plus

                                                                             
Query: 217       agatgggaaagggctccttcaagtatgcctgggtcttggacaaactaaaggctgaacgtg 276
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103475879 agatgggaaagggctccttcaagtatgcctgggtcttggacaaactaaaggctgaacgtg 103475938

                                                                             
Query: 277       agcgtggtattaccattgacatctccctgtggaaattcgagaccagcaagtactacgtga 336
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103475939 agcgtggtattaccattgacatctccctgtggaaattcgagaccagcaagtactacgtga 103475998

                                                                             
Query: 337       ccatcattgatgctccaggacacagagactttattaagaacatgattacaggcacttccc 396
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103475999 ccatcattgatgctccaggacacagagactttattaagaacatgattacaggcacttccc 103476058

                    
Query: 397       agg 399
                 |||
Sbjct: 103476059 agg 103476061



 Score =  359 bits (181), Expect = 2e-96
 Identities = 181/181 (100%)
 Strand = Plus / Plus

                                                                             
Query: 38        aggtgtcgtgaaagccatcgctaaaagctaagcaaaaatgggaaaggagaagactcacat 97
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103475505 aggtgtcgtgaaagccatcgctaaaagctaagcaaaaatgggaaaggagaagactcacat 103475564

                                                                             
Query: 98        caacatcgtcgtcatcggacacgtcgattcgggcaagtccaccactactggccatctgat 157
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103475565 caacatcgtcgtcatcggacacgtcgattcgggcaagtccaccactactggccatctgat 103475624

                                                                             
Query: 158       ctacaaatgcggtgggatcgacaaaagaaccatcgaaaagttcgaaaaagaggctgcgga 217
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103475625 ctacaaatgcggtgggatcgacaaaagaaccatcgaaaagttcgaaaaagaggctgcgga 103475684

                  
Query: 218       g 218
                 |
Sbjct: 103475685 g 103475685



 Score =  210 bits (106), Expect = 1e-51
 Identities = 200/221 (90%), Gaps = 9/221 (4%)
 Strand = Plus / Plus

                                                                             
Query: 846       ggtattggtacagtccctgtgggccgagtggagaccggtgtttccaaac-tggcatggtg 904
                 ||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||
Sbjct: 103476800 ggtattggtacagtccctgtgggccgagtggagaccggtgttctcaaacctggcatggtg 103476859

                                                                             
Query: 905       gtcaactttgctccagtca--ggtacaaccgaaagtca-gtctgtggaa-tgccacatga 960
                 |||| ||||||||||||||  | |||||| ||| |||| |||||| ||| |||  |||||
Sbjct: 103476860 gtcacctttgctccagtcaatgttacaactgaa-gtcaagtctgttgaaatgcaccatga 103476918

                                                                             
Query: 961       agctttgagtgaagcccttcctgggggacacgtgggcttttatgtc-aaaacgtgtctgt 1019
                 ||||||||||||||||||||||||||   ||||||||||| ||||| |||||||||||||
Sbjct: 103476919 agctttgagtgaagcccttcctggggacaacgtgggctttaatgtcaaaaacgtgtctgt 103476978

                                                          
Query: 1020      caaagacg-tcgtcgtggcaatgtggct-gtgacagcaaaa 1058
                 |||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 103476979 caaagacgttcgtcgtggcaatgtggctggtgacagcaaaa 103477019



 Score =  194 bits (98), Expect = 7e-47
 Identities = 141/155 (90%), Gaps = 2/155 (1%)
 Strand = Plus / Plus

                                                                             
Query: 696       atgccttggttccagggatggaaagtcacccgtaaagatggcaatgccagtggaaccaca 755
                 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103476562 atgccttggttcaagggatggaaagtcacccgtaaagatggcaatgccagtggaaccaca 103476621

                                                                             
Query: 756       ctgcttgaagctctggattgcattttaacaccaactcgtccaaactgac-agcccttgcg 814
                 |||||||||||||||||||||||| || ||||||||||||| ||||||| ||||||||||
Sbjct: 103476622 ctgcttgaagctctggattgcattctaccaccaactcgtcc-aactgacaagcccttgcg 103476680

                                                    
Query: 815       cctggnnnnnnnagacgtctacaaaattggtggta 849
                 ||||         ||||||||||||||||||||||
Sbjct: 103476681 cctgcccctccaggacgtctacaaaattggtggta 103476715



 Score =  107 bits (54), Expect = 1e-20
 Identities = 347/441 (78%), Gaps = 14/441 (3%)
 Strand = Plus / Plus

                                                                             
Query: 114       ggacacgtcgattcgggcaagtccaccactactggccatctgatctacaaatgcggtggg 173
                 |||||| | ||||| |||||||| |||||||||||| || |||||||| | ||   ||||
Sbjct: 139609236 ggacacatagattcaggcaagtctaccactactggctatgtgatctacgagtg---tggg 139609292

                                                                             
Query: 174       atcgac--aaaagaaccatcgaaaagttcgaaaaagaggctgcggagatgggaaagggct 231
                 || |||  |||| || ||| ||||| || || ||||||| ||| ||||||| ||||| ||
Sbjct: 139609293 attgaccaaaaaaaaacattgaaaaatttgagaaagaggttgctgagatggaaaaggcct 139609352

                                                                             
Query: 232       ccttcaagtatgcctgggtcttggacaaactaaaggctgaacgtgagcgtggtattacca 291
                 | ||||| ||||  ||||||||||| ||||| || | |||| |||||| |||||| ||||
Sbjct: 139609353 ctttcaaatatgtatgggtcttggaaaaactgaaagttgaatgtgagcttggtatcacca 139609412

                                                                             
Query: 292       ttgacatctccctgtggaaattcgagaccagcaagtactacgtgaccatcattgatgctc 351
                 ||||||  ||| |||| ||||  |||||||| ||||| ||  |||| || || |||||| 
Sbjct: 139609413 ttgacaattccatgtgaaaatatgagaccagtaagtattatatgactataat-gatgcta 139609471

                                                                             
Query: 352       caggacacagagactttattaagaa-catgattacaggcacttcccaggctgactgtgct 410
                  |||| |||||||||| |  || || |||||||| ||| || || ||  |||||| | ||
Sbjct: 139609472 taggatacagagacttgagcaaaaaacatgattataggtacatctcatactgactctcct 139609531

                                                                             
Query: 411       gtcctgattgttgctgctggtgttggtgaattcgaagcaggtatttccaagaacgggcag 470
                 || ||||| || |       |||||||||||| ||||||||||| ||||| || || |||
Sbjct: 139609532 gtactgatggtag-------tgttggtgaatttgaagcaggtatctccaataatggacag 139609584

                                                                             
Query: 471       acccgtgagcatgctcttctggcctacaccctgggtgtgaaacagctcattgttggcgtt 530
                 || | ||| ||| | |||||||| |||   |||| ||||||||| || ||||||||  ||
Sbjct: 139609585 actcatgaacatacccttctggcttactttctggttgtgaaacaactaattgttggtatt 139609644

                                      
Query: 531       aacaaaatggattccactgag 551
                 |||||||| ||||||||||||
Sbjct: 139609645 aacaaaatagattccactgag 139609665



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                               
Query: 13        cgcaacgggtttgccgccaggacacaggtg 42
                 ||||||||||||||||||||||||||||||
Sbjct: 103474797 cgcaacgggtttgccgccaggacacaggtg 103474826


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  446 bits (225), Expect = e-122
 Identities = 625/760 (82%), Gaps = 15/760 (1%)
 Strand = Plus / Minus

                                                                            
Query: 19       gggtttgccgccaggacacaggtgtcgtgaaagccatcgctaaaagctaagcaaaaatgg 78
                ||||||||| |||||||| |||| || ||||| |||  ||||||  |||||| | |||| 
Sbjct: 48460370 gggtttgccaccaggacaaaggtatcatgaaaaccactgctaaat-ctaagctacaatga 48460312

                                                                            
Query: 79       gaaaggagaagactcacatcaacatcgtcgtcatcggacacgtcgattcgggcaagtcca 138
                ||||||||||||||||||||||  | || ||||  |||||||| ||||  |||||||| |
Sbjct: 48460311 gaaaggagaagactcacatcaatgttgttgtcactggacacgtagatttaggcaagtcaa 48460252

                                                                            
Query: 139      ccactactggccatctgatctacaaatgcggtgggatcgacaaaagaaccatcgaaaagt 198
                |||||||||||||||  |||| |||||| ||||||||| |  |||||||||| | || ||
Sbjct: 48460251 ccactactggccatcccatctgcaaatgtggtgggatcaatgaaagaaccatgggaaggt 48460192

                                                                            
Query: 199      tcgaaaaagaggctgcggagatgggaaagggctccttcaagtatgcctgggtcttggaca 258
                | || || |||||||| ||| |||||||||||||||   ||||||||||  |||   | |
Sbjct: 48460191 ttgagaaggaggctgctgaggtgggaaagggctcctctgagtatgcctgaatctcaaata 48460132

                                                                            
Query: 259      aactaaaggctgaacgtgagcgtggtattaccattgacatctccctgtggaaattcgaga 318
                |||  ||  || |||||||| |||| || |||||| |  ||| ||| ||||||||| |||
Sbjct: 48460131 aaccgaaaactaaacgtgagtgtgggatcaccattaatgtcttcctctggaaattccaga 48460072

                                                                            
Query: 319      ccagcaagtactacgtgaccatcattgatgctccaggacacagagactttattaagaaca 378
                ||| ||||||||| ||| |||||| |||||| ||||||  |||||| ||||  || ||||
Sbjct: 48460071 ccaccaagtactatgtggccatcagtgatgccccaggatccagagattttaccaaaaaca 48460012

                                                                            
Query: 379      tgattacaggcacttcccaggctgactgtgctgtcctgattgttgctgctggtgttggtg 438
                ||| || | |||  |||||||||||              ||||||||||||||| |||||
Sbjct: 48460011 tgactatatgcatatcccaggctga--------------ttgttgctgctggtgctggtg 48459966

                                                                            
Query: 439      aattcgaagcaggtatttccaagaacgggcagacccgtgagcatgctcttctggcctaca 498
                |||| ||||| ||||| |||||||| |||||||||| |||| |||| ||| |||| ||||
Sbjct: 48459965 aatttgaagctggtatctccaagaatgggcagacccttgagtatgcccttatggcttaca 48459906

                                                                            
Query: 499      ccctgggtgtgaaacagctcattgttggcgttaacaaaatggattccactgagccaccct 558
                | |||||||| ||||| || |||||||| ||||||||||||||   ||||||||||||||
Sbjct: 48459905 ctctgggtgtaaaacaactaattgttggtgttaacaaaatggacaacactgagccaccct 48459846

                                                                            
Query: 559      acagccagaagagatatgaagagattgtaaaggaagtcagcacctacattaagaaaattg 618
                |||||||||||||||   ||| |||  | ||||||||||||||| |||||||||||||||
Sbjct: 48459845 acagccagaagagatgcaaagggatcattaaggaagtcagcacccacattaagaaaattg 48459786

                                                                            
Query: 619      gctacaaccctgatacagtagcatttgtgccaatttctggctggaatggtgacaacatgc 678
                ||||||||    | ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 48459785 gctacaactgcaacacagtagcatttgtgcctatttctggctgaaatggtgacaacatgc 48459726

                                                                            
Query: 679      tggagccaagtgctaatatgccttggttccagggatggaaagtcacccgtaaagatggca 738
                |||||| ||||||||| || |||||||||   |||||||||||||||| |||||||||||
Sbjct: 48459725 tggagctaagtgctaacattccttggttcacaggatggaaagtcacccataaagatggca 48459666

                                                        
Query: 739      atgccagtggaaccacactgcttgaagctctggattgcat 778
                ||| |  ||||||||  |||||||||||||||||||||||
Sbjct: 48459665 atgtccatggaaccatgctgcttgaagctctggattgcat 48459626


>Sscrofa_Chr09 
||          Length = 153670197

 Score =  426 bits (215), Expect = e-116
 Identities = 544/646 (84%), Gaps = 10/646 (1%)
 Strand = Plus / Minus

                                                                           
Query: 264     aaggctgaacgtgagcgtggtattaccattgacatctccctgtggaaattcgagaccagc 323
               |||||||||||| ||||| || ||| | ||||| ||||||||||||||||| ||||||||
Sbjct: 7535676 aaggctgaacgtcagcgtcgtgttatccttgacgtctccctgtggaaattcaagaccagc 7535617

                                                                           
Query: 324     aa-gtactacgtgaccatcattgatgctccaggacacagagactttattaagaacatgat 382
               || |||||| |||| |||| |||| || ||||||| | ||||||||||||| |||| |||
Sbjct: 7535616 aaagtactaggtgatcatcgttgacgcgccaggacgcggagactttattaaaaacacgat 7535557

                                                                           
Query: 383     tacaggcacttcccaggctgactgtgctgtcctgattgttgctgctggtgttggtgaatt 442
               ||||||||| ||||  |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7535556 tacaggcacatcccgagctgactgtgctgtcctgattgctgctgctggtgttggtgaatt 7535497

                                                                           
Query: 443     cgaagcaggtatttccaagaacgggcagacccgtgagcatgctcttctggcctacaccct 502
               | || ||||||||| ||||||| ||||||||||||||| ||| |||| ||| ||||| ||
Sbjct: 7535496 caaaccaggtattttcaagaacaggcagacccgtgagcctgcccttccggcttacactct 7535437

                                                                           
Query: 503     gggtgtgaaacagctcattgttggcgttaacaaaatggattccactgagccaccctacag 562
               ||||||||||| ||| |||||||| ||    |||||||||||  ||||||||||||   |
Sbjct: 7535436 gggtgtgaaacggctaattgttggagt---gaaaatggattcttctgagccaccctgtgg 7535380

                                                                           
Query: 563     ccagaagagatatgaagagattgtaaaggaagtcagcacctacattaagaaaattggcta 622
               |||||||||||  || || || || ||||||||||| || ||||| | |||||| |||||
Sbjct: 7535379 ccagaagagat-cgaggaaatggttaaggaagtcagtacttacatgacgaaaatgggcta 7535321

                                                                           
Query: 623     caaccctgatacagtagcatttgtgccaatttctggctggaatggtgacaacatgctgga 682
               |||||||||||| ||||| | ||||||| ||| |||| ||||||||||| |||||||| |
Sbjct: 7535320 caaccctgatacggtagcttctgtgccagttt-tggcgggaatggtgaccacatgctgaa 7535262

                                                                           
Query: 683     gccaagtgctaatatgccttgg-ttccagggatggaaagtcacccgtaaagatggcaatg 741
               |||||||||||  ||||||||| ||| | |||||||||||||||| | ||||||||||||
Sbjct: 7535261 gccaagtgctaccatgccttggtttcaaaggatggaaagtcacccatgaagatggcaatg 7535202

                                                                           
Query: 742     ccagtggaaccacactgcttgaagctctggattgcattttaacaccaactcgtccaaact 801
               |||| |||||||  ||||||||||||||||| |||||  |  | ||||||||||| | ||
Sbjct: 7535201 ccagcggaaccatgctgcttgaagctctggactgcatcctgccgccaactcgtcc-agct 7535143

                                                                           
Query: 802     gac-agcccttgcgcctggnnnnnnnagacgtctacaaaattggtggtattggtacagtc 860
               ||| |||||| || || |         ||||||| ||||  ||||||||||||||| |||
Sbjct: 7535142 gacaagccctcgcaccagccattccaggacgtctgcaaagctggtggtattggtaccgtc 7535083

                                                             
Query: 861     cctgtgggccgagtggagaccggtgtt-tccaaactggcatggtgg 905
               |||| |||| |||||||||| |||||| || || ||||||||||||
Sbjct: 7535082 cctgggggctgagtggagacaggtgttctcaaacctggcatggtgg 7535037



 Score =  141 bits (71), Expect = 9e-31
 Identities = 155/183 (84%)
 Strand = Plus / Minus

                                                                            
Query: 217      agatgggaaagggctccttcaagtatgcctgggtcttggacaaactaaaggctgaacgtg 276
                ||||||| ||||||||||||||||| ||||||||  |||||||||| ||||| ||  | |
Sbjct: 28756498 agatgggtaagggctccttcaagtacgcctgggtgctggacaaactcaaggcggagagag 28756439

                                                                            
Query: 277      agcgtggtattaccattgacatctccctgtggaaattcgagaccagcaagtactacgtga 336
                |||| || || ||||| ||||||||||||||||| ||||||||||||||||||||  | |
Sbjct: 28756438 agcgaggcatcaccatcgacatctccctgtggaagttcgagaccagcaagtactatatca 28756379

                                                                            
Query: 337      ccatcattgatgctccaggacacagagactttattaagaacatgattacaggcacttccc 396
                ||||||| || || || || ||||| ||||| || ||||||||||| || ||||| ||||
Sbjct: 28756378 ccatcatcgacgccccgggccacagggacttcatcaagaacatgatcaccggcacctccc 28756319

                   
Query: 397      agg 399
                |||
Sbjct: 28756318 agg 28756316



 Score =  141 bits (71), Expect = 9e-31
 Identities = 155/183 (84%)
 Strand = Plus / Plus

                                                                            
Query: 217      agatgggaaagggctccttcaagtatgcctgggtcttggacaaactaaaggctgaacgtg 276
                ||||||| ||||||||||||||||| ||||||||  |||||||||| ||||| ||  | |
Sbjct: 28922501 agatgggtaagggctccttcaagtacgcctgggtgctggacaaactcaaggcggagagag 28922560

                                                                            
Query: 277      agcgtggtattaccattgacatctccctgtggaaattcgagaccagcaagtactacgtga 336
                |||| || || ||||| ||||||||||||||||| ||||||||||||||||||||  | |
Sbjct: 28922561 agcgaggcatcaccatcgacatctccctgtggaagttcgagaccagcaagtactatatca 28922620

                                                                            
Query: 337      ccatcattgatgctccaggacacagagactttattaagaacatgattacaggcacttccc 396
                ||||||| || || || || ||||| ||||| || ||||||||||| || ||||| ||||
Sbjct: 28922621 ccatcatcgacgccccgggccacagggacttcatcaagaacatgatcaccggcacctccc 28922680

                   
Query: 397      agg 399
                |||
Sbjct: 28922681 agg 28922683



 Score =  141 bits (71), Expect = 9e-31
 Identities = 155/183 (84%)
 Strand = Plus / Plus

                                                                            
Query: 217      agatgggaaagggctccttcaagtatgcctgggtcttggacaaactaaaggctgaacgtg 276
                ||||||| ||||||||||||||||| ||||||||  |||||||||| ||||| ||  | |
Sbjct: 29641240 agatgggtaagggctccttcaagtacgcctgggtgctggacaaactcaaggcggagagag 29641299

                                                                            
Query: 277      agcgtggtattaccattgacatctccctgtggaaattcgagaccagcaagtactacgtga 336
                |||| || || ||||| ||||||||||||||||| ||||||||||||||||||||  | |
Sbjct: 29641300 agcgaggcatcaccatcgacatctccctgtggaagttcgagaccagcaagtactatatca 29641359

                                                                            
Query: 337      ccatcattgatgctccaggacacagagactttattaagaacatgattacaggcacttccc 396
                ||||||| || || || || ||||| ||||| || ||||||||||| || ||||| ||||
Sbjct: 29641360 ccatcatcgacgccccgggccacagggacttcatcaagaacatgatcaccggcacctccc 29641419

                   
Query: 397      agg 399
                |||
Sbjct: 29641420 agg 29641422



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 105/125 (84%)
 Strand = Plus / Minus

                                                                            
Query: 75       atgggaaaggagaagactcacatcaacatcgtcgtcatcggacacgtcgattcgggcaag 134
                ||||| || |||||||| ||||| || ||||| |||||||| ||||| || || ||||||
Sbjct: 28756842 atgggcaaagagaagacgcacattaatatcgttgtcatcgggcacgtggactctggcaag 28756783

                                                                            
Query: 135      tccaccactactggccatctgatctacaaatgcggtgggatcgacaaaagaaccatcgaa 194
                |||||||| || || ||||| |||||||| || || ||||||||||| || |||||||| 
Sbjct: 28756782 tccaccaccaccgggcatctcatctacaagtgtggagggatcgacaagaggaccatcgag 28756723

                     
Query: 195      aagtt 199
                |||||
Sbjct: 28756722 aagtt 28756718



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 105/125 (84%)
 Strand = Plus / Plus

                                                                            
Query: 75       atgggaaaggagaagactcacatcaacatcgtcgtcatcggacacgtcgattcgggcaag 134
                ||||| || |||||||| ||||| || ||||| |||||||| ||||| || || ||||||
Sbjct: 28922157 atgggcaaagagaagacgcacattaatatcgttgtcatcgggcacgtggactctggcaag 28922216

                                                                            
Query: 135      tccaccactactggccatctgatctacaaatgcggtgggatcgacaaaagaaccatcgaa 194
                |||||||| || || ||||| |||||||| || || ||||||||||| || |||||||| 
Sbjct: 28922217 tccaccaccaccgggcatctcatctacaagtgtggagggatcgacaagaggaccatcgag 28922276

                     
Query: 195      aagtt 199
                |||||
Sbjct: 28922277 aagtt 28922281



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                            
Query: 456      tccaagaacgggcagacccgtgagcatgctcttctggcctacaccctgggtgtgaaacag 515
                |||||||||||||||||||| ||||| || || ||||||| ||||||||| ||||| |||
Sbjct: 28755917 tccaagaacgggcagacccgcgagcacgcgctgctggccttcaccctgggcgtgaagcag 28755858

                  
Query: 516      ct 517
                ||
Sbjct: 28755857 ct 28755856



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                            
Query: 456      tccaagaacgggcagacccgtgagcatgctcttctggcctacaccctgggtgtgaaacag 515
                |||||||||||||||||||| ||||| || || ||||||| ||||||||| ||||| |||
Sbjct: 28923082 tccaagaacgggcagacccgcgagcacgcgctgctggccttcaccctgggcgtgaagcag 28923141

                  
Query: 516      ct 517
                ||
Sbjct: 28923142 ct 28923143



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 120/149 (80%)
 Strand = Plus / Minus

                                                                           
Query: 19      gggtttgccgccaggacacaggtgtcgtgaaagccatcgctaaaagctaagcaaaaatgg 78
               |||||||||||||||||||||||||| | ||| || || || ||| |||||| | ||  |
Sbjct: 7535893 gggtttgccgccaggacacaggtgtcattaaaaccgtccctgaaacctaagcgagaacag 7535834

                                                                           
Query: 79      gaaaggagaagactcacatcaacatcgtcgtcatcggacacgtcgattcgggcaagtcca 138
               |||||||||||| || ||||| | |||  ||| | |||| ||  ||||| |||| ||| |
Sbjct: 7535833 gaaaggagaagattcccatcagcgtcggtgtccttggacgcgaagattcaggcacgtcta 7535774

                                            
Query: 139     ccactactggccatctgatctacaaatgc 167
               ||||| ||||||| | |||||||| ||||
Sbjct: 7535773 ccactgctggccaccggatctacacatgc 7535745


>Sscrofa_Chr06 
||          Length = 157765593

 Score =  238 bits (120), Expect = 5e-60
 Identities = 298/356 (83%), Gaps = 1/356 (0%)
 Strand = Plus / Plus

                                                                             
Query: 13        cgcaacgggtttgccgccaggacacaggtgtcgtgaaagccatcgctaaaagctaagcaa 72
                 ||||| |||||||| ||||||||||||||||| | || |||||||||| | || ||||||
Sbjct: 145475923 cgcaatgggtttgctgccaggacacaggtgtcctcaacgccatcgctaga-gccaagcaa 145475981

                                                                             
Query: 73        aaatgggaaaggagaagactcacatcaacatcgtcgtcatcggacacgtcgattcgggca 132
                 || ||||| |||||||||||| | |||||||||| ||||  ||||||||| || | ||||
Sbjct: 145475982 aagtgggacaggagaagactcccgtcaacatcgttgtcactggacacgtcaatccaggca 145476041

                                                                             
Query: 133       agtccaccactactggccatctgatctacaaatgcggtgggatcgacaaaagaaccatcg 192
                  ||| |||||   |||||||| ||||| |||||| ||||||||||||||  ||||| | |
Sbjct: 145476042 cgtctaccaccgttggccatccgatctccaaatgtggtgggatcgacaagtgaaccgttg 145476101

                                                                             
Query: 193       aaaagttcgaaaaagaggctgcggagatgggaaagggctccttcaagtatgcctgggtct 252
                 |||||||| | || |||||||| |||||||||||||||| | ||||| ||||||||||||
Sbjct: 145476102 aaaagttcaagaaggaggctgccgagatgggaaagggcttcatcaagcatgcctgggtct 145476161

                                                                             
Query: 253       tggacaaactaaaggctgaacgtgagcgtggtattaccattgacatctccctgtggaaat 312
                 | |||||||| || || ||||||| || |||| |  ||||||| ||||||| ||||||||
Sbjct: 145476162 tagacaaactgaaagcggaacgtgggcctggtgtccccattgatatctcccggtggaaat 145476221

                                                                         
Query: 313       tcgagaccagcaagtactacgtgaccatcattgatgctccaggacacagagacttt 368
                   |||| |||||||| ||||||| |||||  ||| || ||||| ||||||||||||
Sbjct: 145476222 ctgagatcagcaagtgctacgtggccatccctgacgccccagggcacagagacttt 145476277



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 457      ccaagaacgggcagacccgtgagcatgctcttctggcctacaccctgggtgtgaaacagc 516
                |||||| ||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||
Sbjct: 75514283 ccaagancgggcagacccgtgagcatgcactgctggcctacacgctgggcgtgaagcagc 75514224

                    
Query: 517      tcat 520
                ||||
Sbjct: 75514223 tcat 75514220



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 113/137 (82%)
 Strand = Plus / Minus

                                                                            
Query: 75       atgggaaaggagaagactcacatcaacatcgtcgtcatcggacacgtcgattcgggcaag 134
                ||||| || |||||||| |||||||| || || |||||||| || || || |||||||||
Sbjct: 75517394 atgggcaaagagaagacccacatcaatattgtggtcatcggccatgtggactcgggcaag 75517335

                                                                            
Query: 135      tccaccactactggccatctgatctacaaatgcggtgggatcgacaaaagaaccatcgaa 194
                |||||||| || || ||||| |||||||  ||||| || |||||||| || ||||| |||
Sbjct: 75517334 tccaccaccacggggcatctcatctacaggtgcgggggcatcgacaagaggaccattgaa 75517275

                                 
Query: 195      aagttcgaaaaagaggc 211
                | |||||| || |||||
Sbjct: 75517274 aggttcgagaaggaggc 75517258


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  226 bits (114), Expect = 2e-56
 Identities = 389/477 (81%), Gaps = 4/477 (0%)
 Strand = Plus / Plus

                                                                            
Query: 302      cctgtggaaattcgagaccagcaagtactacgtgaccatcattgatgctccaggacacag 361
                ||||||||||||| ||||||||||||| ||||||||||||| ||||||  | ||||| | 
Sbjct: 11959794 cctgtggaaattcaagaccagcaagtattacgtgaccatcactgatgcctctggacataa 11959853

                                                                            
Query: 362      agactttattaagaacatgattacaggcacttcccaggctgactgtgctgtcctgattgt 421
                |  ||| || ||  || |||||||||||||  ||||||||| |||||||||||||| |||
Sbjct: 11959854 a--cttcatcaaacacttgattacaggcacaccccaggctgcctgtgctgtcctgactgt 11959911

                                                                            
Query: 422      tgctgctggtgttggtgaattcgaagcaggtatttccaagaacgggcagacccgtgagca 481
                |||||   ||||||||||||| || |  | | | ||||  || ||   |||| |||||||
Sbjct: 11959912 tgctgtcagtgttggtgaatttgatgtggctgtctccagcaatggatggacctgtgagca 11959971

                                                                            
Query: 482      tgctcttctggcctacaccctgggtgtgaaacagctcattgttggcgttaacaaaatgga 541
                ||| | ||||| | |||| |||| ||||| ||| |  |||||||| |||||  |||||||
Sbjct: 11959972 tgcccgtctggtccacactctggatgtgagacaacgaattgttggggttaatgaaatgga 11960031

                                                                            
Query: 542      ttccactgagccaccctacagccagaagagatatgaagagattgtaaaggaagtcagcac 601
                 ||||| |||||||| ||||||||||||||| |||| || ||||| ||||||||||||||
Sbjct: 11960032 gtccaccgagccacc-tacagccagaagagacatgaggaaattgttaaggaagtcagcac 11960090

                                                                            
Query: 602      ctacattaagaaaattggctacaaccctgatacagtagcatttgtgccaatttctggctg 661
                |||||  ||||||| |||||||||  |||| |||| || ||| || |  |||||||| ||
Sbjct: 11960091 ctacaggaagaaaactggctacaaatctgacacagcagtattggtactgatttctggttg 11960150

                                                                            
Query: 662      gaatggtgacaacatgctggagccaagtgctaatatgccttggttccagggatggaaagt 721
                ||| ||||| ||  |||||  |||||||||||  ||||||||| ||   ||| |||||||
Sbjct: 11960151 gaaaggtgataatgtgctgctgccaagtgctagcatgccttggctcataggaaggaaagt 11960210

                                                                         
Query: 722      cacccgtaaagatggcaatgccagtggaaccacactgcttgaagctctggattgcat 778
                ||||| | | ||||||||||||||||||||||  |||| ||||||||||||||||||
Sbjct: 11960211 cacccat-aggatggcaatgccagtggaaccaagctgcctgaagctctggattgcat 11960266



 Score =  176 bits (89), Expect = 2e-41
 Identities = 159/181 (87%), Gaps = 1/181 (0%)
 Strand = Plus / Minus

                                                                             
Query: 586       taaaggaagtcagcacctacattaagaaaattggctacaaccctgatacagtagcatttg 645
                 |||||||||||||||||||||||||||||||||||| ||||||  | || | ||||||| 
Sbjct: 133457181 taaaggaagtcagcacctacattaagaaaattggct-caaccccaacactggagcattta 133457123

                                                                             
Query: 646       tgccaatttctggctggaatggtgacaacatgctggagccaagtgctaatatgccttggt 705
                  |||| ||||  | |||||||||||||||| ||||| | |||||||||| |||| |||||
Sbjct: 133457122 ggccagtttccagttggaatggtgacaacacgctggggtcaagtgctaacatgctttggt 133457063

                                                                             
Query: 706       tccagggatggaaagtcacccgtaaagatggcaatgccagtggaaccacactgcttgaag 765
                 ||| |||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||
Sbjct: 133457062 tccggggatggaaagtcaccggtaaagatggcagtgccagtggaaccacacggcttaaag 133457003

                  
Query: 766       c 766
                 |
Sbjct: 133457002 c 133457002



 Score =  133 bits (67), Expect = 2e-28
 Identities = 158/187 (84%), Gaps = 1/187 (0%)
 Strand = Plus / Minus

                                                                             
Query: 299       ctccctgtggaaattcgagaccagcaagtactacgtgaccatcattgatgctccaggaca 358
                 |||||| ||||||||| |||| | |||||| || |||||||||| |||||  ||| ||||
Sbjct: 133457433 ctccctatggaaattcaagacga-caagtattatgtgaccatcactgatgtcccaagaca 133457375

                                                                             
Query: 359       cagagactttattaagaacatgattacaggcacttcccaggctgactgtgctgtcctgat 418
                 |||||||||| | || ||||||||| ||||| | ||||||||||||| ||||||||||||
Sbjct: 133457374 cagagactttttcaaaaacatgatttcaggcgcatcccaggctgactatgctgtcctgat 133457315

                                                                             
Query: 419       tgttgctgctggtgttggtgaattcgaagcaggtatttccaagaacgggcagacccgtga 478
                 || |||||||||||||||||||    |||| || || | |||||| ||||||||| ||||
Sbjct: 133457314 tggtgctgctggtgttggtgaacctaaagctggaatctacaagaaagggcagacctgtga 133457255

                        
Query: 479       gcatgct 485
                  ||||||
Sbjct: 133457254 acatgct 133457248



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                             
Query: 216       gagatgggaaagggctccttcaagtatgcctgggtcttggacaaactaaaggctgaacgt 275
                 |||||||| |||||||| |||||| | |||||||||||||| ||||| || |||||| ||
Sbjct: 133458116 gagatggggaagggctctttcaaggaggcctgggtcttggataaactgaaagctgaaagt 133458057

                           
Query: 276       gagcgtggta 285
                 |||| |||||
Sbjct: 133458056 gagcttggta 133458047


>Sscrofa_Chr07 
||          Length = 134764511

 Score =  188 bits (95), Expect = 4e-45
 Identities = 231/275 (84%), Gaps = 1/275 (0%)
 Strand = Plus / Minus

                                                                            
Query: 504      ggtgtgaaacagctcattgttggcgttaacaaaatggattccactgagccaccctacagc 563
                |||||||||||  | ||||| || | || ||| |||||||||| | ||||||||||||||
Sbjct: 81510833 ggtgtgaaacaattaattgtcggtgctatcaagatggattccattaagccaccctacagc 81510774

                                                                            
Query: 564      cagaagagatatgaagagattgtaaaggaagtcagcacctacattaagaaaattggctac 623
                |||||||||||  | || ||  | || || ||||||||||||| |||||||||| |||| 
Sbjct: 81510773 cagaagagatacaaggaaatcattaaagaggtcagcacctacagtaagaaaatttgctat 81510714

                                                                            
Query: 624      aaccctgatacagtagcatttgtgccaatttctggctggaatggtgacaacatgctggag 683
                |||| |||  ||||||||| ||| ||||||| ||| | ||||||||||||||||| ||||
Sbjct: 81510713 aacc-tgacccagtagcatctgtaccaatttttggttagaatggtgacaacatgccggag 81510655

                                                                            
Query: 684      ccaagtgctaatatgccttggttccagggatggaaagtcacccgtaaagatggcaatgcc 743
                 ||  |||||| |||||||| ||| | |||| |||||||||| |||||||||| ||||||
Sbjct: 81510654 acacatgctaacatgccttgcttcaaaggatagaaagtcacctgtaaagatgggaatgcc 81510595

                                                   
Query: 744      agtggaaccacactgcttgaagctctggattgcat 778
                |||||||||   |||||||||||||||||||||||
Sbjct: 81510594 agtggaaccttgctgcttgaagctctggattgcat 81510560


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  172 bits (87), Expect = 3e-40
 Identities = 132/146 (90%), Gaps = 2/146 (1%)
 Strand = Plus / Minus

                                                                            
Query: 633      acagtagcatttgtgccaatttctggctggaatggtgacaacatgctggagccaagtgct 692
                |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 11468995 acagtagcatttgtgccaatttctggttggaatggtgacaacatgctggagccaagtact 11468936

                                                                            
Query: 693      aatatgccttggttccagggatggaaagtcacccgtaaagatggcaatgccagtggaacc 752
                || ||||||| |||| |||||| ||||  || || |||||||||||||||||||||||| 
Sbjct: 11468935 aacatgccttagttcaagggatagaaa--catccataaagatggcaatgccagtggaact 11468878

                                          
Query: 753      acactgcttgaagctctggattgcat 778
                |||||| |||||||| || |||||||
Sbjct: 11468877 acactgtttgaagctttgaattgcat 11468852



 Score =  137 bits (69), Expect = 1e-29
 Identities = 377/474 (79%), Gaps = 28/474 (5%)
 Strand = Plus / Minus

                                                                          
Query: 239    gtatgcctgggtcttggacaaactaaaggctgaacgtgagcgtggtat-taccattgaca 297
              |||||||||||||||||||| ||| || |||||||||||||   |||| |||||| ||  
Sbjct: 805617 gtatgcctgggtcttggacacactgaaagctgaacgtgagcacagtatctaccatggatg 805558

                                                                          
Query: 298    tctccctgtggaaattcgagaccagcaagtactacgtgaccatcattgatgctccaggac 357
                ||  ||||||||||||||  ||  ||||||||||||||||| | |||||||   ||||
Sbjct: 805557 cgtc--tgtggaaattcgaggtcattaagtactacgtgaccattactgatgcttg-ggac 805501

                                                                          
Query: 358    acagagactttattaagaacatgattacaggcacttcccaggctgactgtgctgtcctga 417
              |||||||| | |  |||| |||||| ||||||||  ||||||||||||||| |||||| |
Sbjct: 805500 acagagacgtca--aaga-catgatgacaggcacaccccaggctgactgtgttgtcctaa 805444

                                                                          
Query: 418    ttgttgctgctggtgttggtgaattcgaagcaggtatttccaagaacgggcagacccgtg 477
                ||||||||| || |||||||||| ||||||||||| | |||||| |||| |||||   
Sbjct: 805443 gcgttgctgctagt-ttggtgaatttgaagcaggtatctacaagaatgggctgaccc--- 805388

                                                                          
Query: 478    agcatgctcttctggcctacaccctgggtgtgaaacagctcattgttggcgttaacaaaa 537
                       ||||||| ||||| |||||||||||||  || |||||||  |||||     
Sbjct: 805387 ---------ttctggcttacactctgggtgtgaaacgactaattgttgaggttaag---- 805341

                                                                          
Query: 538    tggattccactgagccaccctacagccagaagagatatgaagagattgtaaaggaagtca 597
              | |||| ||||||| |||||||  || |||||||| |  | ||  |  ||||||||||||
Sbjct: 805340 ttgattgcactgagtcaccctatggctagaagagacacaaggaactcataaaggaagtca 805281

                                                                          
Query: 598    gcacctacattaagaaaattggctacaaccctgatacagtagcatttgtgccaatttctg 657
                ||||||||||||||| ||||| ||||||| |  ||||||||||||| |||||||||||
Sbjct: 805280 atacctacattaagaaacttggcaacaaccccgccacagtagcatttgagccaatttctg 805221

                                                                    
Query: 658    gctggaatggtgaca----acatgctggagccaagtgctaatatgccttggttc 707
              |||| ||| ||||||    ||||||||||||||||||| || ||| ||||||||
Sbjct: 805220 gctgcaattgtgacacacgacatgctggagccaagtgcaaacatgtcttggttc 805167



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 375      aacatgattacaggcacttcccaggctgactgtgctgtcctgattgttgctgctggtgtt 434
                |||||||| |||||||| || ||||||| ||| ||||| |||| ||||| ||||||||||
Sbjct: 11469291 aacatgatgacaggcacatctcaggctggctgcgctgttctgactgttggtgctggtgtt 11469232

                      
Query: 435      ggtgaa 440
                ||||||
Sbjct: 11469231 ggtgaa 11469226


>Sscrofa_Chr08 
||          Length = 148491826

 Score =  165 bits (83), Expect = 6e-38
 Identities = 323/394 (81%), Gaps = 8/394 (2%)
 Strand = Plus / Plus

                                                                            
Query: 299      ctccctgtggaaattcgagaccagcaagtactacgtgaccatcattgatgctccaggaca 358
                ||||||||| ||||| |||||||||||||| || |||| ||||||| |||| ||||||||
Sbjct: 28631399 ctccctgtgaaaatttgagaccagcaagtattatgtgatcatcattaatgccccaggaca 28631458

                                                                            
Query: 359      cagagactttattaagaacatgattacaggcacttcccaggctgactg--tgctgtcctg 416
                |||||||||| | || | |||||||| |||||| || |||||||||||    ||||||||
Sbjct: 28631459 cagagactttttcaaaatcatgattataggcacatctcaggctgactgatccctgtcctg 28631518

                                                                            
Query: 417      attgttgctgctggtgttggtgaattcgaagcaggtatttccaagaacgggcagacccgt 476
                |||| ||||| |||| |||||||||| ||||||||||| |||||||| ||| ||||  ||
Sbjct: 28631519 attg-tgctggtggtattggtgaatttgaagcaggtatctccaagaatgggaagacttgt 28631577

                                                                            
Query: 477      gagcatgctcttctggcctacaccctgggtgtgaaacagctcattgttggcgttaacaaa 536
                |||||||| | |||||| ||| | ||   |||||||   |  ||| |||| |||||||| 
Sbjct: 28631578 gagcatgcccctctggcttacccact-catgtgaaaagaccaatttttggtgttaacaag 28631636

                                                                            
Query: 537      atggattccactgagccaccctacagccagaagagatatgaagagattgtaaaggaagtc 596
                ||||| ||| || ||| ||||| ||||||| |||||||||| || ||| | |||||||||
Sbjct: 28631637 atgga-tcccctaagctaccctgcagccag-agagatatgaggacatttttaaggaagtc 28631694

                                                                            
Query: 597      agcacctacattaagaaaattggctacaaccctgatacagtagcatttgtgccaatttct 656
                |  || || ||||||||||||||||||||| |  | ||||||  |||||||||| ||| |
Sbjct: 28631695 aaaacata-attaagaaaattggctacaactccaacacagtaatatttgtgccagtttat 28631753

                                                  
Query: 657      ggctggaatggtgacaacatgctggagccaagtg 690
                 | ||||||| | | || ||||||||||||||||
Sbjct: 28631754 agttggaatgtttataa-atgctggagccaagtg 28631786


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,451,217
Number of extensions: 296
Number of successful extensions: 296
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 53
Length of query: 1062
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1041
Effective length of database: 2,808,413,156
Effective search space: 2923558095396
Effective search space used: 2923558095396
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)