Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000768
(1458 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030222.1| vitronectin [Bos taurus]. 515 e-146
Alignment gi|NP_001193562.1| proteoglycan 4 [Bos taurus]. 130 3e-30
Alignment gi|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membr... 74 3e-13
Alignment gi|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane... 74 3e-13
Alignment gi|XP_002694738.1| PREDICTED: matrix metallopeptidase 11-like [... 70 5e-12
Alignment gi|XP_584877.3| PREDICTED: matrix metallopeptidase 11-like [Bos... 70 5e-12
Alignment gi|NP_776815.1| matrix metalloproteinase-14 precursor [Bos taur... 68 2e-11
Alignment gi|NP_001179551.1| matrix metalloproteinase-16 [Bos taurus]. 66 7e-11
Alignment gi|XP_002692871.1| PREDICTED: matrix metallopeptidase 16 (membr... 66 7e-11
Alignment gi|NP_001178363.1| matrix metallopeptidase 15 (membrane-inserte... 62 1e-09
>ref|NP_001030222.1| vitronectin [Bos taurus].
Length = 476
Score = 515 bits (1327), Expect = e-146
Identities = 260/417 (62%), Positives = 299/417 (71%), Gaps = 19/417 (4%)
Frame = +1
Query: 142 QVTRGDVFLQPDDEYRAYDYHEETRHNTSVQEEQR----IPVLLAKTEETPV----LKPE 297
QVTRGDVF P+DEY +DY + N++V+ + PVL A+T ETPV L PE
Sbjct: 61 QVTRGDVFHLPEDEYGFHDYSDAQTVNSNVEAQPESTTLAPVLQAQTLETPVQAPVLNPE 120
Query: 298 EEAPP-------PGPQTDDLGVSE----EELCSGKPFDAFTNLKNGSVFAFRGLYCYELD 444
+E PP PG T DLG SE EE CSGKPFDAFT+LKNGS+FAFRGLYCYELD
Sbjct: 121 KEVPPSGRGDSEPGMGTSDLGTSESPAEEETCSGKPFDAFTDLKNGSLFAFRGLYCYELD 180
Query: 445 EKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREIS 624
EKAVRPGYPKLI+DVWGI+GPIDAAFTR+NCQGKTYLFKGSQYWRF DGVL+P++PR IS
Sbjct: 181 EKAVRPGYPKLIRDVWGIEGPIDAAFTRVNCQGKTYLFKGSQYWRFQDGVLEPDFPRNIS 240
Query: 625 EGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAH 804
+GF GI H+++GRERVYFFKG YWEYVFQQQPS+E+CEGSS F H
Sbjct: 241 DGFGGIPDDVDAALALPAHNFNGRERVYFFKGNHYWEYVFQQQPSQEDCEGSSLPAAFKH 300
Query: 805 FALMQRDSWEDIFRLLFWSHSFGGAIEPRIISQDWLGLPEQVDAAMAGQIYISGSALKPS 984
FALMQRDSW DIFRLLFW S+GGA +P++IS++W GLP ++DAAMAG IY+SGSA
Sbjct: 301 FALMQRDSWVDIFRLLFWGGSYGGAGQPQLISRNWFGLPGRLDAAMAGHIYVSGSAPSFP 360
Query: 985 QPKMTKSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTWLPWFSSEETGPGGYNYDDY 1164
+ KMTKSA +L W SSEE G G NYD +
Sbjct: 361 RAKMTKSARRHRKRYRSLRSRGRGRGRNQNPYRRSRS--AFLSWLSSEELGLGANNYDSF 418
Query: 1165 KMDWLVPATCEPIQSVYFFSGEEYYRVNLRTQRVDTVTPPYPRSIAQYWLGCPVPDQ 1335
+MDWLVPATCEPIQSVYFFS ++YYRVNLRT+RVD V PPYPRSIAQYWLGCPVP Q
Sbjct: 419 EMDWLVPATCEPIQSVYFFSEDKYYRVNLRTRRVDAVIPPYPRSIAQYWLGCPVPGQ 475
>ref|NP_001193562.1| proteoglycan 4 [Bos taurus].
Length = 1195
Score = 130 bits (327), Expect = 3e-30
Identities = 76/195 (38%), Positives = 109/195 (55%), Gaps = 9/195 (4%)
Frame = +1
Query: 277 TPVLKPEEEAPPPGPQTDDLGVS-----EEELCSGKPFDAFTNLKNGSVFAFRGLYCYEL 441
TP++ P E GP + G++ E LC+G+P D T L+NG++ AFRG Y + L
Sbjct: 906 TPIVIPGTEIIVRGP-SQGFGINPMFSDETNLCNGRPVDGLTTLRNGTLVAFRGHYFWML 964
Query: 442 DEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREI 621
P P+ I +VWGI PID FTR NC+GKT+ FKGSQYWRF + + D YP+ I
Sbjct: 965 TPFTPPPP-PRRITEVWGIPSPIDTVFTRCNCEGKTFFFKGSQYWRFTNDIKDAGYPKLI 1023
Query: 622 SEGFKGIXXXXXXXXXXXXHSYSGRERVYFFK-GKQYWEYVFQQQPSREECEGSSPS--- 789
S+GF G+ + S E VYFFK G +Y ++Q+P+ ++C G P+
Sbjct: 1024 SKGFGGLNGKIVAALSIAQYK-SRPESVYFFKRGGSVQQYTYKQEPT-QKCTGRRPAINY 1081
Query: 790 DVFAHFALMQRDSWE 834
V+ A ++R +E
Sbjct: 1082 SVYGETAQVRRRRFE 1096
>ref|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
taurus].
Length = 596
Score = 74.3 bits (181), Expect = 3e-13
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 19/242 (7%)
Frame = +1
Query: 247 IPVLLAKTEETPVLKPEEEAP-PPGPQTDDLGVS---EEELCSGKPFDAFTNLKNGSVFA 414
+P L + +P + E P PP P D + + +C G F+ L G +F
Sbjct: 290 LPTLPVRRIHSPSERKHERQPRPPRPPLGDRPATPGAKPNICDGN-FNTVA-LFRGEMFV 347
Query: 415 FRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDG 591
F+ + + L V+ GYP I+ W G+ IDAA+ R + G+ FKG +YW F +
Sbjct: 348 FKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERAD--GRFVFFKGDKYWVFKEV 405
Query: 592 VLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQQPSREEC 771
++P YP + E + + + YFFKG++YW Y R
Sbjct: 406 TVEPGYPHSLGE----LGSCLPREGIDTALRWEPVGKTYFFKGERYWRY----SEERRAT 457
Query: 772 EGSSPSDVFAHFALMQRDSWEDIFRLLFWSHSFGG-----------AIE---PRIISQDW 909
+ P + + Q I + ++++ + G ++E PR I +DW
Sbjct: 458 DPGYPKPITVWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDW 517
Query: 910 LG 915
+G
Sbjct: 518 MG 519
>ref|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
taurus].
Length = 568
Score = 74.3 bits (181), Expect = 3e-13
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 19/242 (7%)
Frame = +1
Query: 247 IPVLLAKTEETPVLKPEEEAP-PPGPQTDDLGVS---EEELCSGKPFDAFTNLKNGSVFA 414
+P L + +P + E P PP P D + + +C G F+ L G +F
Sbjct: 262 LPTLPVRRIHSPSERKHERQPRPPRPPLGDRPATPGAKPNICDGN-FNTVA-LFRGEMFV 319
Query: 415 FRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDG 591
F+ + + L V+ GYP I+ W G+ IDAA+ R + G+ FKG +YW F +
Sbjct: 320 FKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERAD--GRFVFFKGDKYWVFKEV 377
Query: 592 VLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQQPSREEC 771
++P YP + E + + + YFFKG++YW Y R
Sbjct: 378 TVEPGYPHSLGE----LGSCLPREGIDTALRWEPVGKTYFFKGERYWRY----SEERRAT 429
Query: 772 EGSSPSDVFAHFALMQRDSWEDIFRLLFWSHSFGG-----------AIE---PRIISQDW 909
+ P + + Q I + ++++ + G ++E PR I +DW
Sbjct: 430 DPGYPKPITVWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDW 489
Query: 910 LG 915
+G
Sbjct: 490 MG 491
>ref|XP_002694738.1| PREDICTED: matrix metallopeptidase 11-like [Bos taurus].
Length = 466
Score = 70.1 bits (170), Expect = 5e-12
Identities = 60/243 (24%), Positives = 96/243 (39%), Gaps = 5/243 (2%)
Frame = +1
Query: 226 SVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVSEEEL---CSGKPFDAFTNLK 396
S + + I L + + P +P + P G T+++ E + FDA ++
Sbjct: 224 SPDDRRGIQQLYGRPQLAPTSRPPDLGPGTGADTNEIAPLEPDAPPDACQVSFDAAATIR 283
Query: 397 NGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQY 573
G +F F+ + + L ++PGYP L W G+ P+DAAF + QG + F+G+QY
Sbjct: 284 -GELFFFKAGFVWRLRGGRLQPGYPALASRHWQGLPSPVDAAFE--DAQGHIWFFQGAQY 340
Query: 574 WRFDDGVLDPNYPREISE-GFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQ 750
W + DG P +SE G +G S + ++YFF+ YW +
Sbjct: 341 WVY-DGEKPVLGPAPLSELGLQGSPIHAALVWG------SEKNKIYFFRSGDYWRF---- 389
Query: 751 QPSREECEGSSPSDVFAHFALMQRDSWEDIFRLLFWSHSFGGAIEPRIISQDWLGLPEQV 930
QPS + P V DW G+P ++
Sbjct: 390 QPSARRVDSPVPRRV-----------------------------------TDWRGVPSEI 414
Query: 931 DAA 939
DAA
Sbjct: 415 DAA 417
>ref|XP_584877.3| PREDICTED: matrix metallopeptidase 11-like [Bos taurus].
Length = 466
Score = 70.1 bits (170), Expect = 5e-12
Identities = 60/243 (24%), Positives = 96/243 (39%), Gaps = 5/243 (2%)
Frame = +1
Query: 226 SVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVSEEEL---CSGKPFDAFTNLK 396
S + + I L + + P +P + P G T+++ E + FDA ++
Sbjct: 224 SPDDRRGIQQLYGRPQLAPTSRPPDLGPGTGADTNEIAPLEPDAPPDACQVSFDAAATIR 283
Query: 397 NGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQY 573
G +F F+ + + L ++PGYP L W G+ P+DAAF + QG + F+G+QY
Sbjct: 284 -GELFFFKAGFVWRLRGGRLQPGYPALASRHWQGLPSPVDAAFE--DAQGHIWFFQGAQY 340
Query: 574 WRFDDGVLDPNYPREISE-GFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQ 750
W + DG P +SE G +G S + ++YFF+ YW +
Sbjct: 341 WVY-DGEKPVLGPAPLSELGLQGSPIHAALVWG------SEKNKIYFFRSGDYWRF---- 389
Query: 751 QPSREECEGSSPSDVFAHFALMQRDSWEDIFRLLFWSHSFGGAIEPRIISQDWLGLPEQV 930
QPS + P V DW G+P ++
Sbjct: 390 QPSARRVDSPVPRRV-----------------------------------TDWRGVPSEI 414
Query: 931 DAA 939
DAA
Sbjct: 415 DAA 417
>ref|NP_776815.1| matrix metalloproteinase-14 precursor [Bos taurus].
Length = 582
Score = 68.2 bits (165), Expect = 2e-11
Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 15/268 (5%)
Frame = +1
Query: 163 FLQPDDEYRAYD--YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDL 336
F+ PDD+ R Y ++ T + + R T P + + + P GP
Sbjct: 268 FVLPDDDRRGIQQLYGSKSGSPTKMPPQPR-------TTSRPSVPDKPKNPTYGPN---- 316
Query: 337 GVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPID 513
+C G FD L+ G +F F+ + + + + V GYP I W G+ I+
Sbjct: 317 ------ICDGN-FDTVAMLR-GEMFVFKERWFWRVRKNQVMDGYPMPIGQFWRGLPASIN 368
Query: 514 AAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSG 693
A+ R + GK FKG ++W FD+ L+P YP+ I E +G+ +
Sbjct: 369 TAYERKD--GKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDRIDAALF----WMP 422
Query: 694 RERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQRDSW---EDIFRLLFWSH 864
+ YFF+G +Y Y F ++ E E V+ R S+ +++F + +
Sbjct: 423 NGKTYFFRGNKY--YRFNEELRIVESEYPKNIKVWEGIPESPRGSFMGSDEVFTYFYKGN 480
Query: 865 SFGG------AIE---PRIISQDWLGLP 921
+ +E P+ +DW+G P
Sbjct: 481 KYWKFNNQKLKVEPGYPKSALRDWMGCP 508
>ref|NP_001179551.1| matrix metalloproteinase-16 [Bos taurus].
Length = 607
Score = 66.2 bits (160), Expect = 7e-11
Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Frame = +1
Query: 268 TEETPVLKPEEEAPPPGPQTDDLGV-------------SEEELCSGKPFDAFTNLKNGSV 408
T P + P PP P+ +D ++ +C G F+ L+ +
Sbjct: 300 TRPLPTVPPHRSVPPADPRKNDRPKPPRPPTGRPSYPGAKPNICDGN-FNTLAILRR-EM 357
Query: 409 FAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD 585
F F+ + + + V GYP I W G+ IDA + N G FKG++YW F
Sbjct: 358 FVFKDQWFWRVRNHRVMDGYPMQITYFWRGLPPSIDAVYE--NSDGNFVFFKGNKYWVFK 415
Query: 586 DGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
D L P YP ++ GI + + YFFKG +YW Y
Sbjct: 416 DTTLQPGYPHDLITLGSGIPPHGIDSAIW----WEDVGKTYFFKGDRYWRY 462
Score = 59.3 bits (142), Expect = 8e-09
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 23/162 (14%)
Frame = +1
Query: 376 DAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGP--IDAAFTRINCQGKT 549
DA +G+ F+G + + ++PGYP + + P ID+A + GKT
Sbjct: 393 DAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDV-GKT 451
Query: 550 YLFKGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGK 723
Y FKG +YWR+ + + +DP YP+ I+ +KGI + ++ YF+KGK
Sbjct: 452 YFFKGDRYWRYSEEMKTMDPGYPKPITV-WKGIPESPQGAFVHKENGFT-----YFYKGK 505
Query: 724 QYWEYVFQ-------------------QQPSREECEGSSPSD 792
+YW++ Q P+ E EG SP D
Sbjct: 506 EYWKFNNQILKVEPGYPRSILKDFMGCDGPTDREKEGHSPPD 547
>ref|XP_002692871.1| PREDICTED: matrix metallopeptidase 16 (membrane-inserted) [Bos
taurus].
Length = 607
Score = 66.2 bits (160), Expect = 7e-11
Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Frame = +1
Query: 268 TEETPVLKPEEEAPPPGPQTDDLGV-------------SEEELCSGKPFDAFTNLKNGSV 408
T P + P PP P+ +D ++ +C G F+ L+ +
Sbjct: 300 TRPLPTVPPHRSVPPADPRKNDRPKPPRPPTGRPSYPGAKPNICDGN-FNTLAILRR-EM 357
Query: 409 FAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD 585
F F+ + + + V GYP I W G+ IDA + N G FKG++YW F
Sbjct: 358 FVFKDQWFWRVRNHRVMDGYPMQITYFWRGLPPSIDAVYE--NSDGNFVFFKGNKYWVFK 415
Query: 586 DGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
D L P YP ++ GI + + YFFKG +YW Y
Sbjct: 416 DTTLQPGYPHDLITLGSGIPPHGIDSAIW----WEDVGKTYFFKGDRYWRY 462
Score = 59.3 bits (142), Expect = 8e-09
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 23/162 (14%)
Frame = +1
Query: 376 DAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGP--IDAAFTRINCQGKT 549
DA +G+ F+G + + ++PGYP + + P ID+A + GKT
Sbjct: 393 DAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDV-GKT 451
Query: 550 YLFKGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGK 723
Y FKG +YWR+ + + +DP YP+ I+ +KGI + ++ YF+KGK
Sbjct: 452 YFFKGDRYWRYSEEMKTMDPGYPKPITV-WKGIPESPQGAFVHKENGFT-----YFYKGK 505
Query: 724 QYWEYVFQ-------------------QQPSREECEGSSPSD 792
+YW++ Q P+ E EG SP D
Sbjct: 506 EYWKFNNQILKVEPGYPRSILKDFMGCDGPTDREKEGHSPPD 547
>ref|NP_001178363.1| matrix metallopeptidase 15 (membrane-inserted) [Bos taurus].
Length = 675
Score = 62.4 bits (150), Expect = 1e-09
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 2/152 (1%)
Frame = +1
Query: 289 KPEEEAPPPGPQ-TDDLGVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPG 465
+P + PPP P+ T+ +C G FD L+ G +F F+G + + + V
Sbjct: 346 RPPKPGPPPQPRATERPDQYGPNICDGD-FDTVAMLR-GEMFVFKGRWFWRVRHNRVLDN 403
Query: 466 YPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGI 642
YP I W G+ I AA+ R + G+ FKG +YW F + L+P YP+ ++ GI
Sbjct: 404 YPMPIGHFWRGLPSDISAAYERQD--GRFVFFKGDRYWLFREANLEPGYPQPLTSYGLGI 461
Query: 643 XXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
+ +FF+ +YW +
Sbjct: 462 PYDRIDTAIW----WEPTGHTFFFQEDRYWRF 489
Score = 52.0 bits (123), Expect = 1e-06
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Frame = +1
Query: 394 KNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQ--GKTYLFKGS 567
++G F+G + E + PGYP+ + +G+ P D T I + G T+ F+
Sbjct: 426 QDGRFVFFKGDRYWLFREANLEPGYPQPLTS-YGLGIPYDRIDTAIWWEPTGHTFFFQED 484
Query: 568 QYWRFDDGVL--DPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYV 741
+YWRF++ DP YP+ IS ++GI +Y+ YF+KG +YW++
Sbjct: 485 RYWRFNEETQRGDPGYPKPISV-WQGIPASPKGAFLSNDAAYT-----YFYKGTKYWKF- 537
Query: 742 FQQQPSREECEGSSPSDVFAHFALMQR-----DSWEDIFR 846
R E P + F Q W D+ R
Sbjct: 538 ---DNERLRMEPGYPKSILRDFMGCQEHVEPGPRWPDVAR 574
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,584,832
Number of extensions: 1670228
Number of successful extensions: 8329
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 8146
Number of HSP's successfully gapped: 27
Length of query: 486
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 380
Effective length of database: 14,174,046
Effective search space: 5386137480
Effective search space used: 5386137480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000768
(1458 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854040.1| PREDICTED: similar to Vitronectin precursor (Se... 520 e-147
Alignment gi|XP_868139.1| PREDICTED: similar to Vitronectin precursor (Se... 519 e-147
Alignment gi|XP_537741.1| PREDICTED: similar to Vitronectin precursor (Se... 487 e-137
Alignment gi|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-... 74 5e-13
Alignment gi|XP_856947.1| PREDICTED: similar to matrix metalloproteinase ... 69 1e-11
Alignment gi|NP_001229661.1| stromelysin-3 [Canis lupus familiaris]. 68 3e-11
Alignment gi|XP_544165.2| PREDICTED: similar to matrix metalloproteinase ... 66 7e-11
Alignment gi|XP_848757.1| PREDICTED: similar to matrix metalloproteinase ... 65 2e-10
Alignment gi|XP_544383.2| PREDICTED: similar to matrix metalloproteinase ... 60 4e-09
Alignment gi|XP_852332.1| PREDICTED: similar to matrix metalloproteinase ... 55 2e-07
>ref|XP_854040.1| PREDICTED: similar to Vitronectin precursor (Serum spreading factor)
(S-protein) (V75) isoform 2 [Canis familiaris].
Length = 470
Score = 520 bits (1339), Expect = e-147
Identities = 266/412 (64%), Positives = 291/412 (70%), Gaps = 16/412 (3%)
Frame = +1
Query: 142 QVTRGDVFLQPDDEYRAYDYHEETRHN---TSVQEEQRIPVLLAKTE----ETPVLKPEE 300
QVTRGDVF P+DEY D HE TR T ++ P L A++E + P+L PEE
Sbjct: 61 QVTRGDVFALPEDEYGVIDDHEGTREQSVLTQLESTTLSPGLQAQSEKFPAQVPILIPEE 120
Query: 301 EAPPPGPQT-------DDLGVS--EEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKA 453
EAP PG T D+ S EEELCSGKPFDAFT+LKNGS+FAFRG YCYELDEKA
Sbjct: 121 EAPGPGQGTLVLEAPDQDISESAAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKA 180
Query: 454 VRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGF 633
VRPGYPKLI+DVWGI+GPIDAAFTRINCQGKTYLFKGSQYWRF+DGVLDP+YPR ISEGF
Sbjct: 181 VRPGYPKLIRDVWGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISEGF 240
Query: 634 KGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFAL 813
KGI SYSGRERVYFFKG+QYWEY FQQQPS+EECEGSS S VF HFAL
Sbjct: 241 KGIPDNVDAAFALPARSYSGRERVYFFKGRQYWEYEFQQQPSQEECEGSSLSTVFEHFAL 300
Query: 814 MQRDSWEDIFRLLFWSHSFGGAIEPRIISQDWLGLPEQVDAAMAGQIYISGSALKPSQPK 993
+QRDSWE F LLFW+ GGA EP ISQDW GLP QVDAAMAG+IYISGSA P+
Sbjct: 301 LQRDSWETFFELLFWNRPSGGAGEPGFISQDWPGLPRQVDAAMAGRIYISGSA-----PR 355
Query: 994 MTKSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTWLPWFSSEETGPGGYNYDDYKMD 1173
WL WFSSEE+G YNYDDY MD
Sbjct: 356 SWVKKLNPKRRNRKRYRSRRNRGRGRSRTSQRQSRSAWLSWFSSEESGLDTYNYDDYNMD 415
Query: 1174 WLVPATCEPIQSVYFFSGEEYYRVNLRTQRVDTVTPPYPRSIAQYWLGCPVP 1329
WLVPATCEPIQSVYFFS ++YYRVNLRT+RVDTV+PPYPRSIAQYWLGC P
Sbjct: 416 WLVPATCEPIQSVYFFSEDKYYRVNLRTRRVDTVSPPYPRSIAQYWLGCSAP 467
>ref|XP_868139.1| PREDICTED: similar to Vitronectin precursor (Serum spreading factor)
(S-protein) (V75) isoform 3 [Canis familiaris].
Length = 459
Score = 519 bits (1337), Expect = e-147
Identities = 266/412 (64%), Positives = 292/412 (70%), Gaps = 16/412 (3%)
Frame = +1
Query: 142 QVTRGDVFLQPDDEYRAYDYHEETRHN---TSVQEEQRIPVLLAKTE----ETPVLKPEE 300
QVTRGDVF P+DEY D HE TR T ++ P L A++E + P+L PEE
Sbjct: 61 QVTRGDVFALPEDEYGVIDDHEGTREQSVLTQLESTTLSPGLQAQSEKFPAQVPILIPEE 120
Query: 301 EAPPPGPQT-------DDLGVS--EEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKA 453
EAP PG T D+ S EEELCSGKPFDAFT+LKNGS+FAFRG YCYELDEKA
Sbjct: 121 EAPGPGQGTLVLEAPDQDISESAAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKA 180
Query: 454 VRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGF 633
VRPGYPKLI+DVWGI+GPIDAAFTRINCQGKTYLFKGSQYWRF+DGVLDP+YPR ISEGF
Sbjct: 181 VRPGYPKLIRDVWGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISEGF 240
Query: 634 KGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFAL 813
KGI SYSGRERVYFFKG+QYWEY FQQQPS+EECEGSS S VF HFAL
Sbjct: 241 KGIPDNVDAAFALPARSYSGRERVYFFKGRQYWEYEFQQQPSQEECEGSSLSTVFEHFAL 300
Query: 814 MQRDSWEDIFRLLFWSHSFGGAIEPRIISQDWLGLPEQVDAAMAGQIYISGSALKPSQPK 993
+QRDSWE F LLFW+ GGA EP ISQDW GLP QVDAAMAG+IYISGSA + K
Sbjct: 301 LQRDSWETFFELLFWNRPSGGAGEPGFISQDWPGLPRQVDAAMAGRIYISGSAPRSWVKK 360
Query: 994 MTKSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTWLPWFSSEETGPGGYNYDDYKMD 1173
+ WL WFSSEE+G YNYDDY MD
Sbjct: 361 LNPK----------------RRNRKRYRSRRNRGRGPWLSWFSSEESGLDTYNYDDYNMD 404
Query: 1174 WLVPATCEPIQSVYFFSGEEYYRVNLRTQRVDTVTPPYPRSIAQYWLGCPVP 1329
WLVPATCEPIQSVYFFS ++YYRVNLRT+RVDTV+PPYPRSIAQYWLGC P
Sbjct: 405 WLVPATCEPIQSVYFFSEDKYYRVNLRTRRVDTVSPPYPRSIAQYWLGCSAP 456
>ref|XP_537741.1| PREDICTED: similar to Vitronectin precursor (Serum spreading factor)
(S-protein) (V75) isoform 1 [Canis familiaris].
Length = 458
Score = 487 bits (1253), Expect = e-137
Identities = 255/412 (61%), Positives = 279/412 (67%), Gaps = 16/412 (3%)
Frame = +1
Query: 142 QVTRGDVFLQPDDEYRAYDYHEETRHN---TSVQEEQRIPVLLAKTE----ETPVLKPEE 300
QVTRGDVF P+DEY D HE TR T ++ P L A++E + P+L PEE
Sbjct: 61 QVTRGDVFALPEDEYGVIDDHEGTREQSVLTQLESTTLSPGLQAQSEKFPAQVPILIPEE 120
Query: 301 EAPPPGPQT-------DDLGVS--EEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKA 453
EAP PG T D+ S EEELCSGKPFDAFT+LKNGS+FAFRG YCYELDEKA
Sbjct: 121 EAPGPGQGTLVLEAPDQDISESAAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKA 180
Query: 454 VRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGF 633
VRPGYPKLI+DVWGI+GPIDAAFTRINCQGKTYLFKGSQYWRF+DGVLDP+YPR ISEGF
Sbjct: 181 VRPGYPKLIRDVWGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISEGF 240
Query: 634 KGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFAL 813
KGI SYSGRERVYFFKG+QYWEY FQQQPS+EECEGSS S VF HFAL
Sbjct: 241 KGIPDNVDAAFALPARSYSGRERVYFFKGRQYWEYEFQQQPSQEECEGSSLSTVFEHFAL 300
Query: 814 MQRDSWEDIFRLLFWSHSFGGAIEPRIISQDWLGLPEQVDAAMAGQIYISGSALKPSQPK 993
+QRDSWE F LLFW+ GGA EP ISQDW GLP QVDAAMAG+IYISGSA P+
Sbjct: 301 LQRDSWETFFELLFWNRPSGGAGEPGFISQDWPGLPRQVDAAMAGRIYISGSA-----PR 355
Query: 994 MTKSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTWLPWFSSEETGPGGYNYDDYKMD 1173
WL WFSSEE+G YNYDDY MD
Sbjct: 356 SWVKKLNPKRRNRKRYRSRRNRGRGRSRTSQRQSRSAWLSWFSSEESGLDTYNYDDYNMD 415
Query: 1174 WLVPATCEPIQSVYFFSGEEYYRVNLRTQRVDTVTPPYPRSIAQYWLGCPVP 1329
WLVPAT +YYRVNLRT+RVDTV+PPYPRSIAQYWLGC P
Sbjct: 416 WLVPAT------------YKYYRVNLRTRRVDTVSPPYPRSIAQYWLGCSAP 455
>ref|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-24 precursor (MMP-24)
(Membrane-type matrix metalloproteinase 5) (MT-MMP 5)
(Membrane-type-5 matrix metalloproteinase) (MT5-MMP)
[Canis familiaris].
Length = 626
Score = 73.6 bits (179), Expect = 5e-13
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 19/242 (7%)
Frame = +1
Query: 247 IPVLLAKTEETPVLKPEEEAP-PPGPQTDDLGVS---EEELCSGKPFDAFTNLKNGSVFA 414
+P L + +P + E P PP P D + + +C G F+ L G +F
Sbjct: 320 LPTLPVRRIHSPSERKHERQPRPPRPPLGDRPSTPGAKPNICDGN-FNTVA-LFRGEMFV 377
Query: 415 FRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDG 591
F+ + + L V+ GYP I+ W G+ IDAA+ R + G+ FKG +YW F +
Sbjct: 378 FKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERAD--GRFVFFKGDKYWVFKEV 435
Query: 592 VLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQQPSREEC 771
++P YP + E + + + YFFKG++YW Y R
Sbjct: 436 TVEPGYPHSLGE----LGSCLPREGIDTALRWEPVGKTYFFKGERYWRY----SEERRAT 487
Query: 772 EGSSPSDVFAHFALMQRDSWEDIFRLLFWSHSFGG-----------AIE---PRIISQDW 909
+ P + + Q I + ++++ + G ++E PR I +DW
Sbjct: 488 DPGYPKPITVWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDW 547
Query: 910 LG 915
+G
Sbjct: 548 MG 549
>ref|XP_856947.1| PREDICTED: similar to matrix metalloproteinase 14 preproprotein
isoform 2 [Canis familiaris].
Length = 582
Score = 68.6 bits (166), Expect = 1e-11
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 3/195 (1%)
Frame = +1
Query: 163 FLQPDDEYRAYD--YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDL 336
F+ PDD+ R Y E+ T + + R T P + + + P GP
Sbjct: 268 FVLPDDDRRGIQQLYGSESGSPTKMPPQPR-------TTSRPSVPDKPKNPTYGPN---- 316
Query: 337 GVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPID 513
+C G FD L+ G +F F+ + + + V GYP I W G+ I+
Sbjct: 317 ------ICDGN-FDTVAVLR-GEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASIN 368
Query: 514 AAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSG 693
A+ R + GK FKG ++W FD+ L+P YP+ I E +G+ +
Sbjct: 369 TAYERKD--GKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALF----WMP 422
Query: 694 RERVYFFKGKQYWEY 738
+ YFF+G +Y+ +
Sbjct: 423 NGKTYFFRGNKYYRF 437
Score = 59.7 bits (143), Expect = 7e-09
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Frame = +1
Query: 394 KNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIK-GPIDAAFTRINCQGKTYLFKGS 567
K+G F+G + DE ++ PGYPK I+++ G+ IDAA + GKTY F+G+
Sbjct: 374 KDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMP-NGKTYFFRGN 432
Query: 568 QYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERV--YFFKGKQYWE 735
+Y+RF++ + +D YP+ I + ++GI S+ G + V YF+KG +YW+
Sbjct: 433 KYYRFNEELRAVDSEYPKNI-KVWEGIPESPRG-------SFMGSDEVFTYFYKGNKYWK 484
Query: 736 Y 738
+
Sbjct: 485 F 485
>ref|NP_001229661.1| stromelysin-3 [Canis lupus familiaris].
Length = 489
Score = 67.8 bits (164), Expect = 3e-11
Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 16/249 (6%)
Frame = +1
Query: 226 SVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVSEEELCSGK---PFDAFTNLK 396
S + + I L + P +P P G T+++ E E FDA + ++
Sbjct: 247 SPDDRRGIQHLYGQPRTAPTSRPPAVGPQAGVDTNEIAPLEPEAPPDACEITFDAVSTIR 306
Query: 397 NGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQY 573
G +F F+ + + L ++PGYP L W G+ P+DAAF + QG + F+G+QY
Sbjct: 307 -GELFFFKAGFVWRLRGGRLQPGYPALASRHWQGLPSPVDAAFE--DAQGHIWFFQGAQY 363
Query: 574 WRFDDGVLDPNYPREISE-GFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY---- 738
W + +G P +SE G G + ++YFF G+ YW +
Sbjct: 364 WVY-NGEKPVLGPAPLSELGLLGSPIQAALAWGPE------KNKIYFFGGRDYWRFHLST 416
Query: 739 --VFQQQPSREECEGSSPSDVFAHFALMQRDSWEDIFR-LLFWSHS--FGGAIE--PRII 897
V P R PS++ A A D + R L+W A+E PR++
Sbjct: 417 RRVDSPVPRRATDWRGVPSEIDA--AFRDADGYAYFLRGRLYWKFDPVKVKALEGFPRLV 474
Query: 898 SQDWLGLPE 924
D+ G E
Sbjct: 475 GPDFFGCTE 483
>ref|XP_544165.2| PREDICTED: similar to matrix metalloproteinase 16 isoform 1 [Canis
familiaris].
Length = 595
Score = 66.2 bits (160), Expect = 7e-11
Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Frame = +1
Query: 268 TEETPVLKPEEEAPPPGPQTDDLGV-------------SEEELCSGKPFDAFTNLKNGSV 408
T P + P PP P+ +D ++ +C G F+ L+ +
Sbjct: 288 TRPLPTVPPHRSIPPADPRKNDRPKPPRPPTGRPSYPGAKPNICDGN-FNTLAILRR-EM 345
Query: 409 FAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD 585
F F+ + + + V GYP I W G+ IDA + N G FKG++YW F
Sbjct: 346 FVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYE--NSDGNFVFFKGNKYWVFK 403
Query: 586 DGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
D L P YP ++ GI + + YFFKG +YW Y
Sbjct: 404 DTTLQPGYPHDLITLGSGIPPHGIDSAIW----WEDVGKTYFFKGDRYWRY 450
Score = 58.9 bits (141), Expect = 1e-08
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Frame = +1
Query: 376 DAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGP--IDAAFTRINCQGKT 549
DA +G+ F+G + + ++PGYP + + P ID+A + GKT
Sbjct: 381 DAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDV-GKT 439
Query: 550 YLFKGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGK 723
Y FKG +YWR+ + + +DP YP+ I+ +KGI + ++ YF+KGK
Sbjct: 440 YFFKGDRYWRYSEEMKTMDPGYPKPITV-WKGIPESPQGAFVHKENGFT-----YFYKGK 493
Query: 724 QYWEY 738
+YW++
Sbjct: 494 EYWKF 498
Score = 53.5 bits (127), Expect = 5e-07
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Frame = +1
Query: 400 GSVFAFRG--LYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQY 573
G + F+G + Y + K + PGYPK I GI AF G TY +KG +Y
Sbjct: 437 GKTYFFKGDRYWRYSEEMKTMDPGYPKPITVWKGIPESPQGAFVHKE-NGFTYFYKGKEY 495
Query: 574 WRFDDGVL--DPNYPREISEGFKG 639
W+F++ +L +P YPR I + F G
Sbjct: 496 WKFNNQILKVEPGYPRSILKDFMG 519
>ref|XP_848757.1| PREDICTED: similar to matrix metalloproteinase 14 preproprotein
isoform 1 [Canis familiaris].
Length = 585
Score = 65.1 bits (157), Expect = 2e-10
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 6/198 (3%)
Frame = +1
Query: 163 FLQPDDEYRAYD--YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDL 336
F+ PDD+ R Y E+ T + + R T P + + + P GP
Sbjct: 268 FVLPDDDRRGIQQLYGSESGSPTKMPPQPR-------TTSRPSVPDKPKNPTYGPN---- 316
Query: 337 GVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPID 513
+C G FD L+ G +F F+ + + + V GYP I W G+ I+
Sbjct: 317 ------ICDGN-FDTVAVLR-GEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASIN 368
Query: 514 AAFTRINCQGKTYLFKGS---QYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHS 684
A+ R + GK FKG+ Q+W FD+ L+P YP+ I E +G+
Sbjct: 369 TAYERKD--GKFVFFKGNHGTQHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALF---- 422
Query: 685 YSGRERVYFFKGKQYWEY 738
+ + YFF+G +Y+ +
Sbjct: 423 WMPNGKTYFFRGNKYYRF 440
Score = 56.2 bits (134), Expect = 8e-08
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 9/124 (7%)
Frame = +1
Query: 394 KNGSVFAFRGLYCYE---LDEKAVRPGYPKLIQDVW-GIK-GPIDAAFTRINCQGKTYLF 558
K+G F+G + + DE ++ PGYPK I+++ G+ IDAA + GKTY F
Sbjct: 374 KDGKFVFFKGNHGTQHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMP-NGKTYFF 432
Query: 559 KGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERV--YFFKGKQ 726
+G++Y+RF++ + +D YP+ I + ++GI S+ G + V YF+KG +
Sbjct: 433 RGNKYYRFNEELRAVDSEYPKNI-KVWEGIPESPRG-------SFMGSDEVFTYFYKGNK 484
Query: 727 YWEY 738
YW++
Sbjct: 485 YWKF 488
>ref|XP_544383.2| PREDICTED: similar to matrix metalloproteinase 14
(membrane-inserted) [Canis familiaris].
Length = 741
Score = 60.5 bits (145), Expect = 4e-09
Identities = 51/212 (24%), Positives = 81/212 (38%), Gaps = 18/212 (8%)
Frame = +1
Query: 157 DVFLQPDDEYRAYDYHEETRHNTSVQEEQRIPVLLAKTEETPVLKPE------------E 300
D F P+D+ R T Q + +P + + P +P E
Sbjct: 350 DTFQLPEDDLRGIQQLYGTPDGQP-QPTRPLPTVTPRRPGRPDHRPPRPPQPPPPGGKPE 408
Query: 301 EAPPPGPQTDDLGVSEEE-----LCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPG 465
P PGP + +C G FD L+ G +F F+G + + + V
Sbjct: 409 RPPKPGPPAQPRATERPDQYGPNICDGD-FDTVAMLR-GEMFVFKGRWFWRVRHNRVLDN 466
Query: 466 YPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGI 642
YP I W G+ I AA+ R + G+ FKG +YW F + L+P YP+ ++ GI
Sbjct: 467 YPMPIGHFWRGLPSDISAAYERQD--GRFVFFKGDRYWLFREANLEPGYPQPLTSYGLGI 524
Query: 643 XXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
+ +FF+ +YW +
Sbjct: 525 PYDRIDTAIW----WEPTGHTFFFQEDRYWRF 552
Score = 52.4 bits (124), Expect = 1e-06
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Frame = +1
Query: 394 KNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQ--GKTYLFKGS 567
++G F+G + E + PGYP+ + +G+ P D T I + G T+ F+
Sbjct: 489 QDGRFVFFKGDRYWLFREANLEPGYPQPLTS-YGLGIPYDRIDTAIWWEPTGHTFFFQED 547
Query: 568 QYWRFDDGVL--DPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYV 741
+YWRF++ DP YP+ IS ++GI +Y+ YF+KG +YW++
Sbjct: 548 RYWRFNEETQRGDPGYPKPISV-WQGIPTSPKGAFLSNDAAYT-----YFYKGTKYWKF- 600
Query: 742 FQQQPSREECEGSSPSDVFAHFALMQRD-----SWEDIFR 846
R E P + F Q W D+ R
Sbjct: 601 ---DNERLRMEPGYPKSILRDFMGCQEQVEPGPRWPDVAR 637
>ref|XP_852332.1| PREDICTED: similar to matrix metalloproteinase 17 preproprotein
[Canis familiaris].
Length = 661
Score = 55.1 bits (131), Expect = 2e-07
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Frame = +1
Query: 415 FRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGV 594
F+G + + V GYP+ + D G +DAAF+ + KTY FK YWRFD+
Sbjct: 466 FKGDRYWVFKDNNVEEGYPRPVSDFGLPPGGVDAAFSWSH-NDKTYFFKDQLYWRFDEHT 524
Query: 595 --LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWE 735
+DP +P S ++GI + YFF+GK+YW+
Sbjct: 525 RRMDPGHPAR-SPPWRGIPSTLDDAMCWSDGA------AYFFRGKEYWK 566
Score = 52.4 bits (124), Expect = 1e-06
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 9/162 (5%)
Frame = +1
Query: 280 PVLKPEEEAPPPGPQTDDLGVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVR 459
P L PE PP ++ L + FDA ++ G F F+G Y + L R
Sbjct: 375 PPLLPE----PPNNRSSTLPRKDVPHRCSTDFDAVAQIR-GEAFFFKGKYFWRL----TR 425
Query: 460 PGY-----PKLIQDVW-GIK---GPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYP 612
G+ P + W G+ +DA + R + K FKG +YW F D ++ YP
Sbjct: 426 DGHLVSLQPAQMHRFWRGLPLQLDSVDAVYERTS-DHKIVFFKGDRYWVFKDNNVEEGYP 484
Query: 613 REISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
R +S+ S+S ++ YFFK + YW +
Sbjct: 485 RPVSD------FGLPPGGVDAAFSWSHNDKTYFFKDQLYWRF 520
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,949,146
Number of extensions: 1706198
Number of successful extensions: 8715
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 8392
Number of HSP's successfully gapped: 23
Length of query: 486
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 379
Effective length of database: 15,307,552
Effective search space: 5801562208
Effective search space used: 5801562208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000768
(1458 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000629.3| vitronectin precursor [Homo sapiens]. 519 e-147
Alignment gi|NP_001121182.1| proteoglycan 4 isoform D [Homo sapiens]. 120 2e-27
Alignment gi|NP_001121181.1| proteoglycan 4 isoform C [Homo sapiens]. 120 2e-27
Alignment gi|NP_001121180.1| proteoglycan 4 isoform B [Homo sapiens]. 120 2e-27
Alignment gi|NP_005798.2| proteoglycan 4 isoform A [Homo sapiens]. 120 2e-27
Alignment gi|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo... 74 4e-13
Alignment gi|NP_004986.1| matrix metalloproteinase-14 preproprotein [Homo... 68 2e-11
Alignment gi|NP_005932.2| matrix metalloproteinase-16 [Homo sapiens]. 66 7e-11
Alignment gi|NP_005931.2| stromelysin-3 preproprotein [Homo sapiens]. 66 9e-11
Alignment gi|NP_002419.1| matrix metalloproteinase-15 preproprotein [Homo... 63 6e-10
>ref|NP_000629.3| vitronectin precursor [Homo sapiens].
Length = 478
Score = 519 bits (1337), Expect = e-147
Identities = 265/420 (63%), Positives = 297/420 (70%), Gaps = 24/420 (5%)
Frame = +1
Query: 142 QVTRGDVFLQPDDEYRAYDYHEETRHNTSVQEEQRIPVLLA--------KTEETPVLKPE 297
QVTRGDVF P+DEY YD EE ++N +V E+ P L + E+TPVLKPE
Sbjct: 61 QVTRGDVFTMPEDEYTVYDDGEE-KNNATVHEQVGGPSLTSDLQAQSKGNPEQTPVLKPE 119
Query: 298 EEAPPPG------------PQTDDLG----VSEEELCSGKPFDAFTNLKNGSVFAFRGLY 429
EEAP P P+T G +EEELCSGKPFDAFT+LKNGS+FAFRG Y
Sbjct: 120 EEAPAPEVGASKPEGIDSRPETLHPGRPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQY 179
Query: 430 CYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNY 609
CYELDEKAVRPGYPKLI+DVWGI+GPIDAAFTRINCQGKTYLFKGSQYWRF+DGVLDP+Y
Sbjct: 180 CYELDEKAVRPGYPKLIRDVWGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDY 239
Query: 610 PREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPS 789
PR IS+GF GI HSYSGRERVYFFKGKQYWEY FQ QPS+EECEGSS S
Sbjct: 240 PRNISDGFDGIPDNVDAALALPAHSYSGRERVYFFKGKQYWEYQFQHQPSQEECEGSSLS 299
Query: 790 DVFAHFALMQRDSWEDIFRLLFWSHSFGGAIEPRIISQDWLGLPEQVDAAMAGQIYISGS 969
VF HFA+MQRDSWEDIF LLFW + G +P+ IS+DW G+P QVDAAMAG+IYISG
Sbjct: 300 AVFEHFAMMQRDSWEDIFELLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGM 359
Query: 970 ALKPSQPKMTKSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTWLPWFSSEETGPGGY 1149
A +PS K + TWL FSSEE+ G
Sbjct: 360 APRPSLAKKQR----FRHRNRKGYRSQRGHSRGRNQNSRRPSRATWLSLFSSEESNLGAN 415
Query: 1150 NYDDYKMDWLVPATCEPIQSVYFFSGEEYYRVNLRTQRVDTVTPPYPRSIAQYWLGCPVP 1329
NYDDY+MDWLVPATCEPIQSV+FFSG++YYRVNLRT+RVDTV PPYPRSIAQYWLGCP P
Sbjct: 416 NYDDYRMDWLVPATCEPIQSVFFFSGDKYYRVNLRTRRVDTVDPPYPRSIAQYWLGCPAP 475
>ref|NP_001121182.1| proteoglycan 4 isoform D [Homo sapiens].
Length = 1270
Score = 120 bits (302), Expect = 2e-27
Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Frame = +1
Query: 271 EETPVLKPEEEAPPPGPQTDDLGVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEK 450
E TP + P G + + E +C+GKP D T L+NG++ AFRG Y + L
Sbjct: 983 EVTPDMDYLPRVPNQGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLSPF 1042
Query: 451 AVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEG 630
+ P + I +VWGI PID FTR NC+GKT+ FK SQYWRF + + D YP+ I +G
Sbjct: 1043 SP-PSPARRITEVWGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKG 1101
Query: 631 FKGIXXXXXXXXXXXXHSYSGRERVYFFK-GKQYWEYVFQQQPSREECEGSSPS 789
F G+ + + E VYFFK G +Y+++Q+P ++C G P+
Sbjct: 1102 FGGLTGQIVAALSTAKYK-NWPESVYFFKRGGSIQQYIYKQEPV-QKCPGRRPA 1153
>ref|NP_001121181.1| proteoglycan 4 isoform C [Homo sapiens].
Length = 1311
Score = 120 bits (302), Expect = 2e-27
Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Frame = +1
Query: 271 EETPVLKPEEEAPPPGPQTDDLGVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEK 450
E TP + P G + + E +C+GKP D T L+NG++ AFRG Y + L
Sbjct: 1024 EVTPDMDYLPRVPNQGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLSPF 1083
Query: 451 AVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEG 630
+ P + I +VWGI PID FTR NC+GKT+ FK SQYWRF + + D YP+ I +G
Sbjct: 1084 SP-PSPARRITEVWGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKG 1142
Query: 631 FKGIXXXXXXXXXXXXHSYSGRERVYFFK-GKQYWEYVFQQQPSREECEGSSPS 789
F G+ + + E VYFFK G +Y+++Q+P ++C G P+
Sbjct: 1143 FGGLTGQIVAALSTAKYK-NWPESVYFFKRGGSIQQYIYKQEPV-QKCPGRRPA 1194
>ref|NP_001121180.1| proteoglycan 4 isoform B [Homo sapiens].
Length = 1363
Score = 120 bits (302), Expect = 2e-27
Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Frame = +1
Query: 271 EETPVLKPEEEAPPPGPQTDDLGVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEK 450
E TP + P G + + E +C+GKP D T L+NG++ AFRG Y + L
Sbjct: 1076 EVTPDMDYLPRVPNQGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLSPF 1135
Query: 451 AVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEG 630
+ P + I +VWGI PID FTR NC+GKT+ FK SQYWRF + + D YP+ I +G
Sbjct: 1136 SP-PSPARRITEVWGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKG 1194
Query: 631 FKGIXXXXXXXXXXXXHSYSGRERVYFFK-GKQYWEYVFQQQPSREECEGSSPS 789
F G+ + + E VYFFK G +Y+++Q+P ++C G P+
Sbjct: 1195 FGGLTGQIVAALSTAKYK-NWPESVYFFKRGGSIQQYIYKQEPV-QKCPGRRPA 1246
>ref|NP_005798.2| proteoglycan 4 isoform A [Homo sapiens].
Length = 1404
Score = 120 bits (302), Expect = 2e-27
Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Frame = +1
Query: 271 EETPVLKPEEEAPPPGPQTDDLGVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEK 450
E TP + P G + + E +C+GKP D T L+NG++ AFRG Y + L
Sbjct: 1117 EVTPDMDYLPRVPNQGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLSPF 1176
Query: 451 AVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEG 630
+ P + I +VWGI PID FTR NC+GKT+ FK SQYWRF + + D YP+ I +G
Sbjct: 1177 SP-PSPARRITEVWGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKG 1235
Query: 631 FKGIXXXXXXXXXXXXHSYSGRERVYFFK-GKQYWEYVFQQQPSREECEGSSPS 789
F G+ + + E VYFFK G +Y+++Q+P ++C G P+
Sbjct: 1236 FGGLTGQIVAALSTAKYK-NWPESVYFFKRGGSIQQYIYKQEPV-QKCPGRRPA 1287
>ref|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo sapiens].
Length = 645
Score = 73.6 bits (179), Expect = 4e-13
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 19/242 (7%)
Frame = +1
Query: 247 IPVLLAKTEETPVLKPEEEAP-PPGPQTDDLGVS---EEELCSGKPFDAFTNLKNGSVFA 414
+P L + +P + E P PP P D + + +C G F+ L G +F
Sbjct: 339 LPTLPVRRIHSPSERKHERQPRPPRPPLGDRPSTPGTKPNICDGN-FNTVA-LFRGEMFV 396
Query: 415 FRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDG 591
F+ + + L V+ GYP I+ W G+ IDAA+ R + G+ FKG +YW F +
Sbjct: 397 FKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERAD--GRFVFFKGDKYWVFKEV 454
Query: 592 VLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQQPSREEC 771
++P YP + E + + + YFFKG++YW Y R
Sbjct: 455 TVEPGYPHSLGE----LGSCLPREGIDTALRWEPVGKTYFFKGERYWRY----SEERRAT 506
Query: 772 EGSSPSDVFAHFALMQRDSWEDIFRLLFWSHSFGG-----------AIE---PRIISQDW 909
+ P + + Q I + ++++ + G ++E PR I +DW
Sbjct: 507 DPGYPKPITVWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDW 566
Query: 910 LG 915
+G
Sbjct: 567 MG 568
>ref|NP_004986.1| matrix metalloproteinase-14 preproprotein [Homo sapiens].
Length = 582
Score = 68.2 bits (165), Expect = 2e-11
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 3/195 (1%)
Frame = +1
Query: 163 FLQPDDEYRAYD--YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDL 336
F+ PDD+ R Y E+ T + + R T P + + + P GP
Sbjct: 269 FVLPDDDRRGIQQLYGGESGFPTKMPPQPR-------TTSRPSVPDKPKNPTYGPN---- 317
Query: 337 GVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPID 513
+C G FD L+ G +F F+ + + + V GYP I W G+ I+
Sbjct: 318 ------ICDGN-FDTVAMLR-GEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASIN 369
Query: 514 AAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSG 693
A+ R + GK FKG ++W FD+ L+P YP+ I E +G+ +
Sbjct: 370 TAYERKD--GKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALF----WMP 423
Query: 694 RERVYFFKGKQYWEY 738
+ YFF+G +Y+ +
Sbjct: 424 NGKTYFFRGNKYYRF 438
Score = 59.7 bits (143), Expect = 7e-09
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Frame = +1
Query: 394 KNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIK-GPIDAAFTRINCQGKTYLFKGS 567
K+G F+G + DE ++ PGYPK I+++ G+ IDAA + GKTY F+G+
Sbjct: 375 KDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMP-NGKTYFFRGN 433
Query: 568 QYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERV--YFFKGKQYWE 735
+Y+RF++ + +D YP+ I + ++GI S+ G + V YF+KG +YW+
Sbjct: 434 KYYRFNEELRAVDSEYPKNI-KVWEGIPESPRG-------SFMGSDEVFTYFYKGNKYWK 485
Query: 736 Y 738
+
Sbjct: 486 F 486
>ref|NP_005932.2| matrix metalloproteinase-16 [Homo sapiens].
Length = 607
Score = 66.2 bits (160), Expect = 7e-11
Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Frame = +1
Query: 268 TEETPVLKPEEEAPPPGPQTDDLGV-------------SEEELCSGKPFDAFTNLKNGSV 408
T P + P PP P+ +D ++ +C G F+ L+ +
Sbjct: 300 TRPLPTVPPHRSIPPADPRKNDRPKPPRPPTGRPSYPGAKPNICDGN-FNTLAILRR-EM 357
Query: 409 FAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD 585
F F+ + + + V GYP I W G+ IDA + N G FKG++YW F
Sbjct: 358 FVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYE--NSDGNFVFFKGNKYWVFK 415
Query: 586 DGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
D L P YP ++ GI + + YFFKG +YW Y
Sbjct: 416 DTTLQPGYPHDLITLGSGIPPHGIDSAIW----WEDVGKTYFFKGDRYWRY 462
Score = 58.9 bits (141), Expect = 1e-08
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Frame = +1
Query: 376 DAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGP--IDAAFTRINCQGKT 549
DA +G+ F+G + + ++PGYP + + P ID+A + GKT
Sbjct: 393 DAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDV-GKT 451
Query: 550 YLFKGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGK 723
Y FKG +YWR+ + + +DP YP+ I+ +KGI + ++ YF+KGK
Sbjct: 452 YFFKGDRYWRYSEEMKTMDPGYPKPITV-WKGIPESPQGAFVHKENGFT-----YFYKGK 505
Query: 724 QYWEY 738
+YW++
Sbjct: 506 EYWKF 510
Score = 53.5 bits (127), Expect = 5e-07
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Frame = +1
Query: 400 GSVFAFRG--LYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQY 573
G + F+G + Y + K + PGYPK I GI AF G TY +KG +Y
Sbjct: 449 GKTYFFKGDRYWRYSEEMKTMDPGYPKPITVWKGIPESPQGAFVHKE-NGFTYFYKGKEY 507
Query: 574 WRFDDGVL--DPNYPREISEGFKG 639
W+F++ +L +P YPR I + F G
Sbjct: 508 WKFNNQILKVEPGYPRSILKDFMG 531
>ref|NP_005931.2| stromelysin-3 preproprotein [Homo sapiens].
Length = 488
Score = 65.9 bits (159), Expect = 9e-11
Identities = 65/237 (27%), Positives = 102/237 (43%), Gaps = 18/237 (7%)
Frame = +1
Query: 268 TEETPVLKPEEEAPPPGPQTDDLGVSEEEL----CSGKPFDAFTNLKNGSVFAFRGLYCY 435
T TP L P+ G T+++ E + C FDA + ++ G +F F+ + +
Sbjct: 265 TSRTPALGPQA-----GIDTNEIAPLEPDAPPDACEAS-FDAVSTIR-GELFFFKAGFVW 317
Query: 436 ELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD--DGVLDPN 606
L ++PGYP L W G+ P+DAAF + QG + F+G+QYW +D VL P
Sbjct: 318 RLRGGQLQPGYPALASRHWQGLPSPVDAAFE--DAQGHIWFFQGAQYWVYDGEKPVLGPA 375
Query: 607 YPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY------VFQQQPSREE 768
E+ G+ + ++YFF+G+ YW + V P R
Sbjct: 376 PLTEL-----GLVRFPVHAALVWGPE---KNKIYFFRGRDYWRFHPSTRRVDSPVPRRAT 427
Query: 769 CEGSSPSDVFAHFALMQRDSWEDIFR-LLFWSHS--FGGAIE--PRIISQDWLGLPE 924
PS++ A A D + R L+W A+E PR++ D+ G E
Sbjct: 428 DWRGVPSEIDA--AFQDADGYAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFGCAE 482
>ref|NP_002419.1| matrix metalloproteinase-15 preproprotein [Homo sapiens].
Length = 669
Score = 63.2 bits (152), Expect = 6e-10
Identities = 53/212 (25%), Positives = 82/212 (38%), Gaps = 18/212 (8%)
Frame = +1
Query: 157 DVFLQPDDEYRAYDYHEETRHNTSVQEEQRIPVLLAKTEETPVLKPE------------E 300
D F P+D+ R T Q Q +P + + P +P E
Sbjct: 287 DNFKLPEDDLRGIQQLYGTPDGQP-QPTQPLPTVTPRRPGRPDHRPPRPPQPPPPGGKPE 345
Query: 301 EAPPPGPQTDDLGVSEEE-----LCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPG 465
P PGP + +C G FD L+ G +F F+G + + + V
Sbjct: 346 RPPKPGPPVQPRATERPDQYGPNICDGD-FDTVAMLR-GEMFVFKGRWFWRVRHNRVLDN 403
Query: 466 YPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGI 642
YP I W G+ G I AA+ R + G+ FKG +YW F + L+P YP+ ++ GI
Sbjct: 404 YPMPIGHFWRGLPGDISAAYERQD--GRFVFFKGDRYWLFREANLEPGYPQPLTSYGLGI 461
Query: 643 XXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
+ +FF+ +YW +
Sbjct: 462 PYDRIDTAIW----WEPTGHTFFFQEDRYWRF 489
Score = 54.3 bits (129), Expect = 3e-07
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Frame = +1
Query: 394 KNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQ--GKTYLFKGS 567
++G F+G + E + PGYP+ + +G+ P D T I + G T+ F+
Sbjct: 426 QDGRFVFFKGDRYWLFREANLEPGYPQPLTS-YGLGIPYDRIDTAIWWEPTGHTFFFQED 484
Query: 568 QYWRFDDGVL--DPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYV 741
+YWRF++ DP YP+ IS ++GI +Y+ YF+KG +YW++
Sbjct: 485 RYWRFNEETQRGDPGYPKPISV-WQGIPASPKGAFLSNDAAYT-----YFYKGTKYWKF- 537
Query: 742 FQQQPSREECEGSSPSDVFAHFALMQR-----DSWEDIFRLLFWSHSFGGA 879
R E P + F Q W D+ R F H GGA
Sbjct: 538 ---DNERLRMEPGYPKSILRDFMGCQEHVEPGPRWPDVARPPFNPH--GGA 583
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,852,773
Number of extensions: 1673708
Number of successful extensions: 8166
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 8011
Number of HSP's successfully gapped: 24
Length of query: 486
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 380
Effective length of database: 14,802,980
Effective search space: 5625132400
Effective search space used: 5625132400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000768
(1458 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035837.1| vitronectin precursor [Mus musculus]. 501 e-142
Alignment gi|NP_001103616.1| proteoglycan 4 isoform 2 [Mus musculus]. 129 6e-30
Alignment gi|NP_067375.3| proteoglycan 4 isoform 1 [Mus musculus]. 129 6e-30
Alignment gi|NP_034938.3| matrix metalloproteinase-24 [Mus musculus]. 74 4e-13
Alignment gi|NP_032634.3| matrix metalloproteinase-14 [Mus musculus]. 67 3e-11
Alignment gi|NP_032632.1| stromelysin-3 precursor [Mus musculus]. 66 8e-11
Alignment gi|NP_062698.2| matrix metalloproteinase-16 precursor [Mus musc... 66 8e-11
Alignment gi|NP_032635.1| matrix metalloproteinase-15 precursor [Mus musc... 63 3e-10
Alignment gi|NP_001157669.1| matrix metalloproteinase-19 isoform 2 [Mus m... 57 5e-08
Alignment gi|NP_067387.1| matrix metalloproteinase-19 isoform 1 [Mus musc... 57 5e-08
>ref|NP_035837.1| vitronectin precursor [Mus musculus].
Length = 478
Score = 501 bits (1291), Expect = e-142
Identities = 259/420 (61%), Positives = 292/420 (69%), Gaps = 22/420 (5%)
Frame = +1
Query: 142 QVTRGDVFLQPDDEYRAYDYHEETRHNTS--VQEEQRIPV--LLAKTE----ETPVLKPE 297
QVTRGDVF P+D+Y +YDY EE ++NT+ VQ E P L +T+ T L PE
Sbjct: 61 QVTRGDVFTMPEDDYWSYDYVEEPKNNTNTGVQPENTSPPGDLNPRTDGTLKPTAFLDPE 120
Query: 298 EEAPPPGPQ-----------TDDLGVSE---EELCSGKPFDAFTNLKNGSVFAFRGLYCY 435
E+ P P+ T D G E EELCSGKPFDAFT+LKNGS+FAFRG YCY
Sbjct: 121 EQPSTPAPKVEQQEEILRPDTTDQGTPEFPEEELCSGKPFDAFTDLKNGSLFAFRGQYCY 180
Query: 436 ELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPR 615
ELDE AVRPGYPKLIQDVWGI+GPIDAAFTRINCQGKTYLFKGSQYWRF+DGVLDP YPR
Sbjct: 181 ELDETAVRPGYPKLIQDVWGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPGYPR 240
Query: 616 EISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDV 795
ISEGF GI H YSGRERVYFFKGKQYWEY FQQQPS+EECEGSS S V
Sbjct: 241 NISEGFSGIPDNVDAAFALPAHRYSGRERVYFFKGKQYWEYEFQQQPSQEECEGSSLSAV 300
Query: 796 FAHFALMQRDSWEDIFRLLFWSHSFGGAIEPRIISQDWLGLPEQVDAAMAGQIYISGSAL 975
F HFAL+QRDSWE+IF LLFW S GA EP+ IS++W G+P +VDAAMAG+IY++GS
Sbjct: 301 FEHFALLQRDSWENIFELLFWGRSSDGAREPQFISRNWHGVPGKVDAAMAGRIYVTGSLS 360
Query: 976 KPSQPKMTKSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTWLPWFSSEETGPGGYNY 1155
+Q K KS W FSSEE+G G YN
Sbjct: 361 HSAQAKKQKS--KRRSRKRYRSRRGRGHRRSQSSNSRRSSRSIWFSLFSSEESGLGTYNN 418
Query: 1156 DDYKMDWLVPATCEPIQSVYFFSGEEYYRVNLRTQRVDTVTPPYPRSIAQYWLGCPVPDQ 1335
DY MDWLVPATCEPIQSVYFFSG++YYRVNLRT+RVD+V PPYPRSIAQYWLGCP ++
Sbjct: 419 YDYDMDWLVPATCEPIQSVYFFSGDKYYRVNLRTRRVDSVNPPYPRSIAQYWLGCPTSEK 478
>ref|NP_001103616.1| proteoglycan 4 isoform 2 [Mus musculus].
Length = 423
Score = 129 bits (324), Expect = 6e-30
Identities = 82/219 (37%), Positives = 116/219 (52%), Gaps = 20/219 (9%)
Frame = +1
Query: 346 EEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFT 525
E LC+GKP D T L+NG++ AFRG Y + L+ P P+ I +VWGI PID FT
Sbjct: 160 ETNLCNGKPVDGLTTLRNGTLVAFRGHYFWMLNPFRP-PSPPRRITEVWGIPSPIDTVFT 218
Query: 526 RINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGR-ER 702
R NC+GKT+ FK SQYWRF + V+DP YP++I +GF G+ Y R E
Sbjct: 219 RCNCEGKTFFFKDSQYWRFTNDVVDPGYPKQIVKGFGGLTGKIVAALSIA--KYKDRPES 276
Query: 703 VYFFK-GKQYWEYVFQQQPSREECEGSSPS---DVFAHFALMQRDSWEDIFRLLFWSHSF 870
VYFFK G +Y ++Q+P + +C G P+ V+ A ++R +E F +H+F
Sbjct: 277 VYFFKRGGNIQQYTYKQEPMK-KCTGRRPAINYSVYGEAAQVRRRRFERAVG-PFQTHTF 334
Query: 871 --GGAIEPRIISQD-------------WLGLPEQVDAAM 942
++ R+ QD W G P V +A+
Sbjct: 335 RIHYSVPMRVSYQDKGFLHNEVKVSTMWRGFPNVVTSAI 373
>ref|NP_067375.3| proteoglycan 4 isoform 1 [Mus musculus].
Length = 1221
Score = 129 bits (324), Expect = 6e-30
Identities = 82/219 (37%), Positives = 116/219 (52%), Gaps = 20/219 (9%)
Frame = +1
Query: 346 EEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFT 525
E LC+GKP D T L+NG++ AFRG Y + L+ P P+ I +VWGI PID FT
Sbjct: 958 ETNLCNGKPVDGLTTLRNGTLVAFRGHYFWMLNPFRP-PSPPRRITEVWGIPSPIDTVFT 1016
Query: 526 RINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGR-ER 702
R NC+GKT+ FK SQYWRF + V+DP YP++I +GF G+ Y R E
Sbjct: 1017 RCNCEGKTFFFKDSQYWRFTNDVVDPGYPKQIVKGFGGLTGKIVAALSIA--KYKDRPES 1074
Query: 703 VYFFK-GKQYWEYVFQQQPSREECEGSSPS---DVFAHFALMQRDSWEDIFRLLFWSHSF 870
VYFFK G +Y ++Q+P + +C G P+ V+ A ++R +E F +H+F
Sbjct: 1075 VYFFKRGGNIQQYTYKQEPMK-KCTGRRPAINYSVYGEAAQVRRRRFERAVG-PFQTHTF 1132
Query: 871 --GGAIEPRIISQD-------------WLGLPEQVDAAM 942
++ R+ QD W G P V +A+
Sbjct: 1133 RIHYSVPMRVSYQDKGFLHNEVKVSTMWRGFPNVVTSAI 1171
>ref|NP_034938.3| matrix metalloproteinase-24 [Mus musculus].
Length = 618
Score = 73.6 bits (179), Expect = 4e-13
Identities = 60/246 (24%), Positives = 103/246 (41%), Gaps = 19/246 (7%)
Frame = +1
Query: 247 IPVLLAKTEETPVLKPEEEAP-PPGPQTDDLGVS---EEELCSGKPFDAFTNLKNGSVFA 414
+P L + +P + E P PP P D + + +C G F+ L G +F
Sbjct: 312 LPTLPVRRIHSPSERKHERHPRPPRPPLGDRPSTPGAKPNICDGN-FNTVA-LFRGEMFV 369
Query: 415 FRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDG 591
F+ + + L V+ GYP I+ W G+ IDAA+ R + G+ FKG +YW F +
Sbjct: 370 FKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERAD--GRFVFFKGDKYWVFKEV 427
Query: 592 VLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQQPSREEC 771
++P YP + E + + + YFFKG++YW Y R
Sbjct: 428 TVEPGYPHSLGE----LGSCLPREGIDTALRWEPVGKTYFFKGERYWRY----SEERRAT 479
Query: 772 EGSSPSDVFAHFALMQRDSWEDIFRLLFWSHSFGG-----------AIE---PRIISQDW 909
+ P + + Q I + ++++ + G ++E PR I +DW
Sbjct: 480 DPGYPKPITVWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDW 539
Query: 910 LGLPEQ 927
+G ++
Sbjct: 540 MGCKQK 545
>ref|NP_032634.3| matrix metalloproteinase-14 [Mus musculus].
Length = 582
Score = 67.4 bits (163), Expect = 3e-11
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 3/195 (1%)
Frame = +1
Query: 163 FLQPDDEYRAYD--YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDL 336
F+ PDD+ R Y ++ T + + R T P + + + P GP
Sbjct: 269 FVLPDDDRRGIQQLYGSKSGSPTKMPPQPR-------TTSRPSVPDKPKNPAYGPN---- 317
Query: 337 GVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPID 513
+C G FD L+ G +F F+ + + + V GYP I W G+ I+
Sbjct: 318 ------ICDGN-FDTVAMLR-GEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASIN 369
Query: 514 AAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSG 693
A+ R + GK FKG ++W FD+ L+P YP+ I E +G+ +
Sbjct: 370 TAYERKD--GKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALF----WMP 423
Query: 694 RERVYFFKGKQYWEY 738
+ YFF+G +Y+ +
Sbjct: 424 NGKTYFFRGNKYYRF 438
Score = 59.3 bits (142), Expect = 7e-09
Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Frame = +1
Query: 394 KNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIK-GPIDAAFTRINCQGKTYLFKGS 567
K+G F+G + DE ++ PGYPK I+++ G+ IDAA + GKTY F+G+
Sbjct: 375 KDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMP-NGKTYFFRGN 433
Query: 568 QYWRFDD--GVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERV--YFFKGKQYWE 735
+Y+RF++ +D YP+ I + ++GI S+ G + V YF+KG +YW+
Sbjct: 434 KYYRFNEEFRAVDSEYPKNI-KVWEGIPESPRG-------SFMGSDEVFTYFYKGNKYWK 485
Query: 736 Y 738
+
Sbjct: 486 F 486
>ref|NP_032632.1| stromelysin-3 precursor [Mus musculus].
Length = 492
Score = 65.9 bits (159), Expect = 8e-11
Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 16/192 (8%)
Frame = +1
Query: 280 PVLKPEEEAPP----PGPQTDDLGVSEEE----LCSGKPFDAFTNLKNGSVFAFRGLYCY 435
P + P AP G T+++ + E E +C FDA + ++ G +F F+ + +
Sbjct: 264 PQMAPTSPAPTLSSQAGTDTNEIALLEPETPPDVCETS-FDAVSTIR-GELFFFKAGFVW 321
Query: 436 ELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYP 612
L ++PGYP L W G+ P+DAAF + QG+ + F+G+QYW + DG P
Sbjct: 322 RLRSGRLQPGYPALASRHWQGLPSPVDAAFE--DAQGQIWFFQGAQYWVY-DGEKPVLGP 378
Query: 613 REISE-GFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY------VFQQQPSREEC 771
+S+ G +G + ++YFF+G YW + V P R
Sbjct: 379 APLSKLGLQGSPVHAALVWGPE------KNKIYFFRGGDYWRFHPRTQRVDNPVPRRSTD 432
Query: 772 EGSSPSDVFAHF 807
PS++ A F
Sbjct: 433 WRGVPSEIDAAF 444
>ref|NP_062698.2| matrix metalloproteinase-16 precursor [Mus musculus].
Length = 607
Score = 65.9 bits (159), Expect = 8e-11
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 14/171 (8%)
Frame = +1
Query: 268 TEETPVLKPEEEAPPPGPQTDDLGV-------------SEEELCSGKPFDAFTNLKNGSV 408
T P + P PP P+ D ++ +C G F+ L+ +
Sbjct: 300 TRPLPTVPPHRSVPPADPRRHDRPKPPRPPTGRPSYPGAKPNICDGN-FNTLAILRR-EM 357
Query: 409 FAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD 585
F F+ + + + V GYP I W G+ IDA + N G FKG++YW F
Sbjct: 358 FVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYE--NSDGNFVFFKGNKYWVFK 415
Query: 586 DGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
D L P YP ++ GI + + YFFKG +YW Y
Sbjct: 416 DTTLQPGYPHDLITLGNGIPPHGIDSAIW----WEDVGKTYFFKGDRYWRY 462
Score = 58.5 bits (140), Expect = 1e-08
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Frame = +1
Query: 376 DAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGP--IDAAFTRINCQGKT 549
DA +G+ F+G + + ++PGYP + + P ID+A + GKT
Sbjct: 393 DAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGNGIPPHGIDSAIWWEDV-GKT 451
Query: 550 YLFKGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGK 723
Y FKG +YWR+ + + +DP YP+ I+ +KGI + ++ YF+KGK
Sbjct: 452 YFFKGDRYWRYSEEMKTMDPGYPKPITI-WKGIPESPQGAFVHKENGFT-----YFYKGK 505
Query: 724 QYWEY 738
+YW++
Sbjct: 506 EYWKF 510
Score = 53.5 bits (127), Expect = 4e-07
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Frame = +1
Query: 400 GSVFAFRG--LYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQY 573
G + F+G + Y + K + PGYPK I GI AF G TY +KG +Y
Sbjct: 449 GKTYFFKGDRYWRYSEEMKTMDPGYPKPITIWKGIPESPQGAFVHKE-NGFTYFYKGKEY 507
Query: 574 WRFDDGVL--DPNYPREISEGFKG 639
W+F++ +L +P YPR I + F G
Sbjct: 508 WKFNNQILKVEPGYPRSILKDFMG 531
>ref|NP_032635.1| matrix metalloproteinase-15 precursor [Mus musculus].
Length = 657
Score = 63.2 bits (152), Expect(2) = 3e-10
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 2/152 (1%)
Frame = +1
Query: 289 KPEEEAPPPGPQ-TDDLGVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPG 465
+P + PPP P+ T+ +C G FD L+ G +F F+G + + + V
Sbjct: 342 RPPKPGPPPQPRATERPDQYGPNICDGN-FDTVAVLR-GEMFVFKGRWFWRVRHNRVLDN 399
Query: 466 YPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGI 642
YP I W G+ G I AA+ R + G FKG++YW F + L+P YP+ +S I
Sbjct: 400 YPMPIGHFWRGLPGNISAAYERQD--GHFVFFKGNRYWLFREANLEPGYPQPLSSYGTDI 457
Query: 643 XXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
+ +FF+ +YW +
Sbjct: 458 PYDRIDTAIW----WEPTGHTFFFQADRYWRF 485
Score = 20.4 bits (41), Expect(2) = 3e-10
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 204 RGDQTQHQRPRRAEDPCPAGQ 266
R + HQ PR + P P G+
Sbjct: 319 RPGRPDHQPPRPPQPPHPGGK 339
>ref|NP_001157669.1| matrix metalloproteinase-19 isoform 2 [Mus musculus].
Length = 455
Score = 56.6 bits (135), Expect = 5e-08
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 1/167 (0%)
Frame = +1
Query: 241 QRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVSEEELCSGKPFDAFTNLKNGSVFAFR 420
+R P + EET +L PGP + CSG+ DA G +AF+
Sbjct: 186 KRSPETRDEEEETEMLTVSPVTAKPGPMPNP--------CSGE-VDAMVLGPRGKTYAFK 236
Query: 421 GLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVL 597
G Y + + + PG I +W G+ G +DAA + +T+ FKG++ WR+ D +
Sbjct: 237 GDYVWTVTDSG--PGPLFQISALWEGLPGNLDAAVYSPRTR-RTHFFKGNKVWRYVDFKM 293
Query: 598 DPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
P +P + + + + ++V+ FKG YW++
Sbjct: 294 SPGFPMKFNRVEPNLDAALY---------WPVNQKVFLFKGSGYWQW 331
>ref|NP_067387.1| matrix metalloproteinase-19 isoform 1 [Mus musculus].
Length = 527
Score = 56.6 bits (135), Expect = 5e-08
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 1/167 (0%)
Frame = +1
Query: 241 QRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVSEEELCSGKPFDAFTNLKNGSVFAFR 420
+R P + EET +L PGP + CSG+ DA G +AF+
Sbjct: 258 KRSPETRDEEEETEMLTVSPVTAKPGPMPNP--------CSGE-VDAMVLGPRGKTYAFK 308
Query: 421 GLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVL 597
G Y + + + PG I +W G+ G +DAA + +T+ FKG++ WR+ D +
Sbjct: 309 GDYVWTVTDSG--PGPLFQISALWEGLPGNLDAAVYSPRTR-RTHFFKGNKVWRYVDFKM 365
Query: 598 DPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
P +P + + + + ++V+ FKG YW++
Sbjct: 366 SPGFPMKFNRVEPNLDAALY---------WPVNQKVFLFKGSGYWQW 403
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,748,642
Number of extensions: 1387183
Number of successful extensions: 6270
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6145
Number of HSP's successfully gapped: 23
Length of query: 486
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 381
Effective length of database: 12,463,779
Effective search space: 4748699799
Effective search space used: 4748699799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000768
(1458 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999269.1| vitronectin precursor [Sus scrofa]. 739 0.0
Alignment gi|XP_003358218.1| PREDICTED: vitronectin-like isoform 2 [Sus s... 212 5e-55
Alignment gi|XP_003358217.1| PREDICTED: vitronectin-like isoform 1 [Sus s... 212 5e-55
Alignment gi|XP_003131061.2| PREDICTED: proteoglycan 4-like [Sus scrofa]. 118 1e-26
Alignment gi|XP_003360593.1| PREDICTED: matrix metalloproteinase-24 [Sus ... 69 7e-12
Alignment gi|XP_001929480.1| PREDICTED: stromelysin-3 [Sus scrofa]. 66 4e-11
Alignment gi|XP_001926652.1| PREDICTED: matrix metalloproteinase-16 [Sus ... 66 4e-11
Alignment gi|NP_999404.1| matrix metalloproteinase-14 precursor [Sus scro... 66 6e-11
Alignment gi|XP_003127010.2| PREDICTED: matrix metalloproteinase-15 [Sus ... 60 3e-09
Alignment gi|XP_003357310.1| PREDICTED: neutrophil collagenase-like [Sus ... 60 4e-09
>ref|NP_999269.1| vitronectin precursor [Sus scrofa].
Length = 459
Score = 739 bits (1909), Expect = 0.0
Identities = 354/399 (88%), Positives = 355/399 (88%)
Frame = +1
Query: 142 QVTRGDVFLQPDDEYRAYDYHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGP 321
QVTRGDVFLQPDDEYRAYDYHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGP
Sbjct: 61 QVTRGDVFLQPDDEYRAYDYHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGP 120
Query: 322 QTDDLGVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIK 501
QTDDLGV EEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIK
Sbjct: 121 QTDDLGVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIK 180
Query: 502 GPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXH 681
GPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGI H
Sbjct: 181 GPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIPDDVDAALALPAH 240
Query: 682 SYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQRDSWEDIFRLLFWS 861
SYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQRDSWEDIFRLLFWS
Sbjct: 241 SYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQRDSWEDIFRLLFWS 300
Query: 862 HSFGGAIEPRIISQDWLGLPEQVDAAMAGQIYISGSALKPSQPKMTKSAXXXXXXXXXXX 1041
HSFGGAIEPR+ISQDWLGLPEQVDAAMAGQIYISGSALKPSQPKMTKSA
Sbjct: 301 HSFGGAIEPRVISQDWLGLPEQVDAAMAGQIYISGSALKPSQPKMTKSARRSGKRYRSRR 360
Query: 1042 XXXXXXXXXXXXXXXXXXXXTWLPWFSSEETGPGGYNYDDYKMDWLVPATCEPIQSVYFF 1221
TWLPWFSSEETGPGGYNYDDYKMDWLVPATCEPIQSVYFF
Sbjct: 361 GRGRGRGHSRSQKSHRQSRSTWLPWFSSEETGPGGYNYDDYKMDWLVPATCEPIQSVYFF 420
Query: 1222 SGEEYYRVNLRTQRVDTVTPPYPRSIAQYWLGCPVPDQK 1338
SGEEYYRVNLRTQRVDTVTPPYPRSIAQYWLGCPVPDQK
Sbjct: 421 SGEEYYRVNLRTQRVDTVTPPYPRSIAQYWLGCPVPDQK 459
>ref|XP_003358218.1| PREDICTED: vitronectin-like isoform 2 [Sus scrofa].
Length = 133
Score = 212 bits (539), Expect = 5e-55
Identities = 102/133 (76%), Positives = 102/133 (76%)
Frame = +1
Query: 940 MAGQIYISGSALKPSQPKMTKSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTWLPWF 1119
MAGQIYISGSALKPSQPKMTKSA TWLPWF
Sbjct: 1 MAGQIYISGSALKPSQPKMTKSARRSGKRYRSRRGRGRGRGHSRSQKSHRQSRSTWLPWF 60
Query: 1120 SSEETGPGGYNYDDYKMDWLVPATCEPIQSVYFFSGEEYYRVNLRTQRVDTVTPPYPRSI 1299
SSEETGPGGYNYDDYKMDWLVPATCEPIQSVYFFSGEEYYRVNLRTQRVDTVTPPYPRSI
Sbjct: 61 SSEETGPGGYNYDDYKMDWLVPATCEPIQSVYFFSGEEYYRVNLRTQRVDTVTPPYPRSI 120
Query: 1300 AQYWLGCPVPDQK 1338
AQYWLGCPVPDQK
Sbjct: 121 AQYWLGCPVPDQK 133
>ref|XP_003358217.1| PREDICTED: vitronectin-like isoform 1 [Sus scrofa].
Length = 133
Score = 212 bits (539), Expect = 5e-55
Identities = 102/133 (76%), Positives = 102/133 (76%)
Frame = +1
Query: 940 MAGQIYISGSALKPSQPKMTKSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTWLPWF 1119
MAGQIYISGSALKPSQPKMTKSA TWLPWF
Sbjct: 1 MAGQIYISGSALKPSQPKMTKSARRSGKRYRSRRGRGRGRGHSRSQKSHRQSRSTWLPWF 60
Query: 1120 SSEETGPGGYNYDDYKMDWLVPATCEPIQSVYFFSGEEYYRVNLRTQRVDTVTPPYPRSI 1299
SSEETGPGGYNYDDYKMDWLVPATCEPIQSVYFFSGEEYYRVNLRTQRVDTVTPPYPRSI
Sbjct: 61 SSEETGPGGYNYDDYKMDWLVPATCEPIQSVYFFSGEEYYRVNLRTQRVDTVTPPYPRSI 120
Query: 1300 AQYWLGCPVPDQK 1338
AQYWLGCPVPDQK
Sbjct: 121 AQYWLGCPVPDQK 133
>ref|XP_003131061.2| PREDICTED: proteoglycan 4-like [Sus scrofa].
Length = 752
Score = 118 bits (295), Expect = 1e-26
Identities = 75/201 (37%), Positives = 103/201 (51%), Gaps = 7/201 (3%)
Frame = +1
Query: 208 ETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVS-----EEELCSGKP 372
+T Q R PVL TP++ P + G +G++ E LC+G+P
Sbjct: 446 DTAEGEKPQLIPRPPVL------TPIVIPGTDFTVRG-HNQGIGINPIFPDETNLCNGRP 498
Query: 373 FDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTY 552
D T L NG++ AFRG Y + L+ P P+ I +VWGI PID FTR NC+ KT+
Sbjct: 499 VDGLTTLHNGTLVAFRGHYFWMLNP-FTPPSPPRRITEVWGIPSPIDTVFTRCNCERKTF 557
Query: 553 LFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGR-ERVYFFK-GKQ 726
FK SQYWRF + + D YP+ IS+GF G+ Y R E VYFFK G
Sbjct: 558 FFKDSQYWRFTNDIKDAGYPKLISKGFGGLNGKIVAALSIA--KYKNRPESVYFFKRGGS 615
Query: 727 YWEYVFQQQPSREECEGSSPS 789
+Y ++Q+P +C G P+
Sbjct: 616 IQQYTYKQEPI-TKCTGRRPA 635
>ref|XP_003360593.1| PREDICTED: matrix metalloproteinase-24 [Sus scrofa].
Length = 393
Score = 68.9 bits (167), Expect = 7e-12
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
Frame = +1
Query: 307 PPPGPQTDDLGVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQD 486
PP G + G ++ +C G F+ L G +F F+ + + L V+ GYP I+
Sbjct: 112 PPLGDRPASPG-AKPNICDGN-FNTVA-LFRGEMFVFKDRWFWRLRNNRVQEGYPMQIEQ 168
Query: 487 VW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXX 663
W G+ IDAA+ R + G+ FKG +YW F + ++P YP + E +
Sbjct: 169 FWKGLPARIDAAYERAD--GRFVFFKGDKYWVFKEVTVEPGYPHSLGE----LGSCLPRE 222
Query: 664 XXXXXHSYSGRERVYFFKGKQYWEY 738
+ + YFFKG++YW Y
Sbjct: 223 GIDTALRWEPVGKTYFFKGERYWRY 247
Score = 59.7 bits (143), Expect = 4e-09
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Frame = +1
Query: 349 EELCSGKP--FDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGI--KGPIDA 516
E+ G P DA +G F+G + E V PGYP + ++ + ID
Sbjct: 167 EQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDT 226
Query: 517 AFTRINCQGKTYLFKGSQYWRFDD--GVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYS 690
A R GKTY FKG +YWR+ + DP YP+ I+ +KGI Y+
Sbjct: 227 AL-RWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITV-WKGIPQAPQGAFISKEGYYT 284
Query: 691 GRERVYFFKGKQYWEY 738
YF+KG+ YW++
Sbjct: 285 -----YFYKGRDYWKF 295
>ref|XP_001929480.1| PREDICTED: stromelysin-3 [Sus scrofa].
Length = 491
Score = 66.2 bits (160), Expect = 4e-11
Identities = 67/238 (28%), Positives = 99/238 (41%), Gaps = 23/238 (9%)
Frame = +1
Query: 280 PVLKPEEEAPPPGPQTDDLGVSEEELCSGKP----------FDAFTNLKNGSVFAFRGLY 429
P L P +P G + GV E+ +P FDA ++ G +F F+ +
Sbjct: 263 PQLAPTSGSPDLGHRA---GVDTNEIAPLEPDTLPDACQVSFDAVATIR-GELFFFKAGF 318
Query: 430 CYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPN 606
+ L ++PGYP L W G+ P+DAAF + QG + F+G+QYW + DG
Sbjct: 319 VWRLRRGHLQPGYPALASRHWQGLPSPVDAAFE--DAQGHIWFFQGAQYWVY-DGEKPAL 375
Query: 607 YPREISE-GFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY------VFQQQPSRE 765
P +SE G G + +VYFF+G YW + V P R
Sbjct: 376 GPAPLSELGLPGSPVHAALVWGPE------KNKVYFFRGGDYWRFHPSTHRVDSPVPRRA 429
Query: 766 ECEGSSPSDVFAHFALMQRDSWEDIFR-LLFWSHS--FGGAIE--PRIISQDWLGLPE 924
PS++ A A D + R L+W A+E PR++ D+ G E
Sbjct: 430 TDWRGVPSEIDA--AFQDADGYAYFLRGRLYWKFDPVKVKALEGFPRLVGLDFFGCSE 485
>ref|XP_001926652.1| PREDICTED: matrix metalloproteinase-16 [Sus scrofa].
Length = 607
Score = 66.2 bits (160), Expect = 4e-11
Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Frame = +1
Query: 268 TEETPVLKPEEEAPPPGPQTDDLGV-------------SEEELCSGKPFDAFTNLKNGSV 408
T P + P PP P+ +D ++ +C G F+ L+ +
Sbjct: 300 TRPLPTVPPHRSIPPVDPRKNDRPKPPRPPTGRPSYPGAKPNICDGN-FNTLAILRR-EM 357
Query: 409 FAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD 585
F F+ + + + V GYP I W G+ IDA + N G FKG++YW F
Sbjct: 358 FVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYE--NSDGNFVFFKGNKYWVFK 415
Query: 586 DGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
D L P YP ++ GI + + YFFKG +YW Y
Sbjct: 416 DTTLQPGYPHDLMTLGSGIPPHGIDSAIW----WEDVGKTYFFKGDRYWRY 462
Score = 60.1 bits (144), Expect = 3e-09
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Frame = +1
Query: 376 DAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGP--IDAAFTRINCQGKT 549
DA +G+ F+G + + ++PGYP + + P ID+A + GKT
Sbjct: 393 DAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLMTLGSGIPPHGIDSAIWWEDV-GKT 451
Query: 550 YLFKGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGK 723
Y FKG +YWR+ + + +DP YP+ I+ +KGI + ++ YF+KGK
Sbjct: 452 YFFKGDRYWRYSEEMKTMDPGYPKPITV-WKGIPESPQGAFVHKENGFT-----YFYKGK 505
Query: 724 QYWEY 738
+YW++
Sbjct: 506 EYWKF 510
Score = 53.5 bits (127), Expect = 3e-07
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Frame = +1
Query: 400 GSVFAFRG--LYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQY 573
G + F+G + Y + K + PGYPK I GI AF G TY +KG +Y
Sbjct: 449 GKTYFFKGDRYWRYSEEMKTMDPGYPKPITVWKGIPESPQGAFVHKE-NGFTYFYKGKEY 507
Query: 574 WRFDDGVL--DPNYPREISEGFKG 639
W+F++ +L +P YPR I + F G
Sbjct: 508 WKFNNQILKVEPGYPRSILKDFMG 531
>ref|NP_999404.1| matrix metalloproteinase-14 precursor [Sus scrofa].
Length = 580
Score = 65.9 bits (159), Expect = 6e-11
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 3/195 (1%)
Frame = +1
Query: 163 FLQPDDEYRAYD--YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDL 336
F+ PDD+ R Y E+ T + + R T P + + + P GP
Sbjct: 267 FVLPDDDRRGIQQLYGSESGFPTKMPPQPR-------TTSKPSVPDKPKNPTYGPN---- 315
Query: 337 GVSEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPID 513
+C G FD L+ G +F F+ + + + + V GYP I W G+ I+
Sbjct: 316 ------ICDGN-FDTVAMLR-GEMFVFKERWFWRVRKNQVMDGYPMPIGQFWRGLPASIN 367
Query: 514 AAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSG 693
A+ R + GK FKG ++W FD+ L+P YP+ I E G +G
Sbjct: 368 TAYERKD--GKFVFFKGDKHWVFDEASLEPGYPKHIKE--LGRRLPTDKIDAALFWMPNG 423
Query: 694 RERVYFFKGKQYWEY 738
++ YFF+G +Y+ +
Sbjct: 424 KD--YFFRGNKYYRF 436
Score = 58.5 bits (140), Expect = 9e-09
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Frame = +1
Query: 394 KNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPID----AAFTRINCQGKTYLFK 561
K+G F+G + DE ++ PGYPK I+++ G + P D A F N GK Y F+
Sbjct: 373 KDGKFVFFKGDKHWVFDEASLEPGYPKHIKEL-GRRLPTDKIDAALFWMPN--GKDYFFR 429
Query: 562 GSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERV--YFFKGKQY 729
G++Y+RF++ + +D YP+ I + ++GI S+ G + V YF+KG +Y
Sbjct: 430 GNKYYRFNEELRAVDSEYPKNI-KVWEGIPESPRG-------SFMGSDEVFTYFYKGNKY 481
Query: 730 WEY 738
W++
Sbjct: 482 WKF 484
>ref|XP_003127010.2| PREDICTED: matrix metalloproteinase-15 [Sus scrofa].
Length = 819
Score = 60.1 bits (144), Expect = 3e-09
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 6/153 (3%)
Frame = +1
Query: 298 EEAPPPGPQTDDLGVSEEE-----LCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRP 462
E P PGP + +C G FD L+ G +F F+G + + + V
Sbjct: 489 ERPPKPGPPAQPRATERPDQYGPNICDGD-FDTVAMLR-GEMFVFKGRWFWRVRHNRVLD 546
Query: 463 GYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKG 639
YP I W G+ I AA+ R + G+ FKG +YW F + L+P YP+ ++ G
Sbjct: 547 NYPMPIGHFWRGLPSDISAAYERQD--GRFVFFKGDRYWLFREANLEPGYPQPLTSYGLG 604
Query: 640 IXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 738
I + +FF+ +YW +
Sbjct: 605 IPYDRIDTAIW----WEPTGHTFFFQEDRYWRF 633
Score = 52.4 bits (124), Expect = 6e-07
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Frame = +1
Query: 394 KNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQ--GKTYLFKGS 567
++G F+G + E + PGYP+ + +G+ P D T I + G T+ F+
Sbjct: 570 QDGRFVFFKGDRYWLFREANLEPGYPQPLTS-YGLGIPYDRIDTAIWWEPTGHTFFFQED 628
Query: 568 QYWRFDDGVL--DPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYV 741
+YWRF++ DP YP+ IS ++GI +Y+ YF+KG +YW++
Sbjct: 629 RYWRFNEDTQRGDPGYPKPISV-WQGIPASPKGAFLSNDAAYT-----YFYKGTKYWKF- 681
Query: 742 FQQQPSREECEGSSPSDVFAHFALMQR-----DSWEDIFR 846
R E P + F Q W D+ R
Sbjct: 682 ---DNERLRMEPGYPKSILRDFMGCQEHVEPGPRWPDVAR 718
>ref|XP_003357310.1| PREDICTED: neutrophil collagenase-like [Sus scrofa].
Length = 468
Score = 59.7 bits (143), Expect = 4e-09
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Frame = +1
Query: 379 AFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLF 558
A+ + VF F+G + L ++ GYPK I + +G + A ++ +GKTY F
Sbjct: 335 AYEDSDKDLVFVFKGNKYWALSGYDIQQGYPKSISN-YGFPSSVQAIDAAVSYRGKTYFF 393
Query: 559 KGSQYWRFDD--GVLDPNYPREISEGFKGI 642
+Q+WR+DD +DP YP+ + F+GI
Sbjct: 394 VNNQFWRYDDQRQSMDPGYPKSTASTFQGI 423
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,687,407
Number of extensions: 1095717
Number of successful extensions: 5291
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 5195
Number of HSP's successfully gapped: 21
Length of query: 486
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 383
Effective length of database: 8,779,541
Effective search space: 3362564203
Effective search space used: 3362564203
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000768
(1458 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 710 0.0
Sscrofa_Chr12 702 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 710 bits (358), Expect = 0.0
Identities = 358/358 (100%)
Strand = Plus / Minus
Query: 871 ggtggtgccatagagccccggatcatcagccaggactggcttggtttgcctgaacaagtg 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6099 ggtggtgccatagagccccggatcatcagccaggactggcttggtttgcctgaacaagtg 6040
Query: 931 gatgcggccatggctggccaaatttacatctcaggctcagccctcaagccctcccagccc 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6039 gatgcggccatggctggccaaatttacatctcaggctcagccctcaagccctcccagccc 5980
Query: 991 aagatgactaagtctgcacgtcgcagtggtaaacgctaccgctcacgccgtggccgtggc 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5979 aagatgactaagtctgcacgtcgcagtggtaaacgctaccgctcacgccgtggccgtggc 5920
Query: 1051 cgtggccgaggccacagccgcagccagaagtcccaccggcagtctcgttcaacctggctg 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5919 cgtggccgaggccacagccgcagccagaagtcccaccggcagtctcgttcaacctggctg 5860
Query: 1111 ccctggttctccagtgaggagactggcccaggaggctacaactatgatgactataagatg 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5859 ccctggttctccagtgaggagactggcccaggaggctacaactatgatgactataagatg 5800
Query: 1171 gactggctcgtgcctgccacctgtgagcccatccagagcgtctacttcttctcaggag 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5799 gactggctcgtgcctgccacctgtgagcccatccagagcgtctacttcttctcaggag 5742
Score = 553 bits (279), Expect = e-155
Identities = 279/279 (100%)
Strand = Plus / Minus
Query: 144 agtgactcgcggggatgtattccttcagccagatgatgagtacagggcctatgactacca 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7996 agtgactcgcggggatgtattccttcagccagatgatgagtacagggcctatgactacca 7937
Query: 204 cgaggagaccagacacaacaccagcgtccaagaagagcagaggatccctgtcctgctggc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7936 cgaggagaccagacacaacaccagcgtccaagaagagcagaggatccctgtcctgctggc 7877
Query: 264 caagactgaagagactccggttctgaaacctgaggaagaggccccaccacctgggcctca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7876 caagactgaagagactccggttctgaaacctgaggaagaggccccaccacctgggcctca 7817
Query: 324 gactgatgatctaggggtctctgaggaagagctgtgcagtgggaaaccctttgatgcctt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7816 gactgatgatctaggggtctctgaggaagagctgtgcagtgggaaaccctttgatgcctt 7757
Query: 384 caccaacctcaagaacggttccgtctttgccttccgagg 422
|||||||||||||||||||||||||||||||||||||||
Sbjct: 7756 caccaacctcaagaacggttccgtctttgccttccgagg 7718
Score = 345 bits (174), Expect = 4e-92
Identities = 201/211 (95%), Gaps = 8/211 (3%)
Strand = Plus / Minus
Query: 1227 agaggagtactaccgagtgaacctgcgcacgcagcgagtggacactgtgacccctcccta 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5226 agaggagtactaccgagtgaacctgcgcacgcagcgagtggacactgtgacccctcccta 5167
Query: 1287 cccacgctccatcgcccagtactggctgggctgcccagttccagaccagaagtaagagtc 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5166 cccacgctccatcgcccagtactggctgggctgcccagttccagaccagaagtaagagtc 5107
Query: 1347 cacacagctgggtctgaatccacacagctgagtctctgctgctgccctctccagcctccc 1406
| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5106 c--------gagtctgaatccacacagctgagtctctgctgctgccctctctagcctccc 5055
Query: 1407 cctcccagcccaataaagagtccttggccct 1437
|||||||||||||||||||||||||||||||
Sbjct: 5054 cctcccagcccaataaagagtccttggccct 5024
Score = 317 bits (160), Expect = 1e-83
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 560 agggtagtcagtactggcgctttgatgatggtgtcctggaccccaattacccccgcgaga 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7250 agggtagtcagtactggcgctttgatgatggtgtcctggaccccaattacccccgcgaga 7191
Query: 620 tctctgaaggcttcaagggtattccggacgatgtggatgcagccttggccctgccggctc 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7190 tctctgaaggcttcaagggtattccggacgatgtggatgcagccttggccctgccggctc 7131
Query: 680 atagctacagtggccgggagcgggtctacttcttcaaagg 719
||||||||||||||||||||||||||||||||||||||||
Sbjct: 7130 atagctacagtggccgggagcgggtctacttcttcaaagg 7091
Score = 311 bits (157), Expect = 6e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 717 agggaaacagtactgggagtatgtgttccagcagcagcccagtcgagaggagtgcgaagg 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6955 agggaaacagtactgggagtatgtgttccagcagcagcccagtcgagaggagtgcgaagg 6896
Query: 777 cagctccccgtcggacgtctttgcacactttgccctgatgcagcgggacagctgggagga 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6895 cagctccccgtcggacgtctttgcacactttgccctgatgcagcgggacagctgggagga 6836
Query: 837 catcttcagacttctcttctggagccattcctttggt 873
|||||||||||||||||||||||||||||||||||||
Sbjct: 6835 catcttcagacttctcttctggagccattcctttggt 6799
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 420 agggctgtactgctatgagctggatgaaaaggcagtgaggcctgggtaccccaagctcat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7644 agggctgtactgctatgagctggatgaaaaggcagtgaggcctgggtaccccaagctcat 7585
Query: 480 ccaagatgtctggggcatcaagggccccattgatgccgccttcacccgcatcaactgtca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7584 ccaagatgtctggggcatcaagggccccattgatgccgccttcacccgcatcaactgtca 7525
Query: 540 ggggaagacctacctcttcaagg 562
|||||||||||||||||||||||
Sbjct: 7524 ggggaagacctacctcttcaagg 7502
Score = 276 bits (139), Expect = 3e-71
Identities = 142/143 (99%)
Strand = Plus / Minus
Query: 3 atccatgacctctcatctctctgtcccttcctcaggcatcagaacctagtttaccagacg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8434 atccatgacctctcatctctctgtcccttcctcaggcatcagaacctagtttaccaggcg 8375
Query: 63 tgaggccggaggtgctgccatggcacccctgaggccccttctgatgctggccctgctggc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8374 tgaggccggaggtgctgccatggcacccctgaggccccttctgatgctggccctgctggc 8315
Query: 123 atgggttgctctggctgaccaag 145
|||||||||||||||||||||||
Sbjct: 8314 atgggttgctctggctgaccaag 8292
>Sscrofa_Chr12
|| Length = 63588571
Score = 702 bits (354), Expect = 0.0
Identities = 357/358 (99%)
Strand = Plus / Minus
Query: 871 ggtggtgccatagagccccggatcatcagccaggactggcttggtttgcctgaacaagtg 930
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 46563866 ggtggtgccatagagccccgggtcatcagccaggactggcttggtttgcctgaacaagtg 46563807
Query: 931 gatgcggccatggctggccaaatttacatctcaggctcagccctcaagccctcccagccc 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46563806 gatgcggccatggctggccaaatttacatctcaggctcagccctcaagccctcccagccc 46563747
Query: 991 aagatgactaagtctgcacgtcgcagtggtaaacgctaccgctcacgccgtggccgtggc 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46563746 aagatgactaagtctgcacgtcgcagtggtaaacgctaccgctcacgccgtggccgtggc 46563687
Query: 1051 cgtggccgaggccacagccgcagccagaagtcccaccggcagtctcgttcaacctggctg 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46563686 cgtggccgaggccacagccgcagccagaagtcccaccggcagtctcgttcaacctggctg 46563627
Query: 1111 ccctggttctccagtgaggagactggcccaggaggctacaactatgatgactataagatg 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46563626 ccctggttctccagtgaggagactggcccaggaggctacaactatgatgactataagatg 46563567
Query: 1171 gactggctcgtgcctgccacctgtgagcccatccagagcgtctacttcttctcaggag 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46563566 gactggctcgtgcctgccacctgtgagcccatccagagcgtctacttcttctcaggag 46563509
Score = 513 bits (259), Expect = e-143
Identities = 275/279 (98%), Gaps = 1/279 (0%)
Strand = Plus / Minus
Query: 144 agtgactcgcggggatgtattccttcagccagatgatgagtacagggcctatgactacca 203
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 46601488 agtgactcgcggggatgtat-ccttcagccagatgatgagtacagggcctatgactacca 46601430
Query: 204 cgaggagaccagacacaacaccagcgtccaagaagagcagaggatccctgtcctgctggc 263
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 46601429 cgaggagaccagacacaacaccagcgtccaagaagagccaaggatccctgtcctgctggc 46601370
Query: 264 caagactgaagagactccggttctgaaacctgaggaagaggccccaccacctgggcctca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601369 caagactgaagagactccggttctgaaacctgaggaagaggccccaccacctgggcctca 46601310
Query: 324 gactgatgatctaggggtctctgaggaagagctgtgcagtgggaaaccctttgatgcctt 383
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601309 gactgatgatctaggggtccctgaggaagagctgtgcagtgggaaaccctttgatgcctt 46601250
Query: 384 caccaacctcaagaacggttccgtctttgccttccgagg 422
|||||||||||||||||||||||||||||||||||||||
Sbjct: 46601249 caccaacctcaagaacggttccgtctttgccttccgagg 46601211
Score = 329 bits (166), Expect = 2e-87
Identities = 200/211 (94%), Gaps = 9/211 (4%)
Strand = Plus / Minus
Query: 1227 agaggagtactaccgagtgaacctgcgcacgcagcgagtggacactgtgacccctcccta 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46562990 agaggagtactaccgagtgaacctgcgcacgcagcgagtggacactgtgacccctcccta 46562931
Query: 1287 cccacgctccatcgcccagtactggctgggctgcccagttccagaccagaagtaagagtc 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46562930 cccacgctccatcgcccagtactggctgggctgcccagttccagaccagaagtaagagtc 46562871
Query: 1347 cacacagctgggtctgaatccacacagctgagtctctgctgctgccctctccagcctccc 1406
| | ||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 46562870 c--------gagtctgaatccacacagctgagtctctgctgctg-cctctctagcctccc 46562820
Query: 1407 cctcccagcccaataaagagtccttggccct 1437
|||||||||||||||||||||||||||||||
Sbjct: 46562819 cctcccagcccaataaagagtccttggccct 46562789
Score = 317 bits (160), Expect = 1e-83
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 560 agggtagtcagtactggcgctttgatgatggtgtcctggaccccaattacccccgcgaga 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46600743 agggtagtcagtactggcgctttgatgatggtgtcctggaccccaattacccccgcgaga 46600684
Query: 620 tctctgaaggcttcaagggtattccggacgatgtggatgcagccttggccctgccggctc 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46600683 tctctgaaggcttcaagggtattccggacgatgtggatgcagccttggccctgccggctc 46600624
Query: 680 atagctacagtggccgggagcgggtctacttcttcaaagg 719
||||||||||||||||||||||||||||||||||||||||
Sbjct: 46600623 atagctacagtggccgggagcgggtctacttcttcaaagg 46600584
Score = 311 bits (157), Expect = 6e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 717 agggaaacagtactgggagtatgtgttccagcagcagcccagtcgagaggagtgcgaagg 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46600448 agggaaacagtactgggagtatgtgttccagcagcagcccagtcgagaggagtgcgaagg 46600389
Query: 777 cagctccccgtcggacgtctttgcacactttgccctgatgcagcgggacagctgggagga 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46600388 cagctccccgtcggacgtctttgcacactttgccctgatgcagcgggacagctgggagga 46600329
Query: 837 catcttcagacttctcttctggagccattcctttggt 873
|||||||||||||||||||||||||||||||||||||
Sbjct: 46600328 catcttcagacttctcttctggagccattcctttggt 46600292
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 420 agggctgtactgctatgagctggatgaaaaggcagtgaggcctgggtaccccaagctcat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601137 agggctgtactgctatgagctggatgaaaaggcagtgaggcctgggtaccccaagctcat 46601078
Query: 480 ccaagatgtctggggcatcaagggccccattgatgccgccttcacccgcatcaactgtca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601077 ccaagatgtctggggcatcaagggccccattgatgccgccttcacccgcatcaactgtca 46601018
Query: 540 ggggaagacctacctcttcaagg 562
|||||||||||||||||||||||
Sbjct: 46601017 ggggaagacctacctcttcaagg 46600995
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 3 atccatgacctctcatctctctgtcccttcctcaggcatcagaacctagtttaccagacg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601926 atccatgacctctcatctctctgtcccttcctcaggcatcagaacctagtttaccagacg 46601867
Query: 63 tgaggccggaggtgctgccatggcacccctgaggccccttctgatgctggccctgctggc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601866 tgaggccggaggtgctgccatggcacccctgaggccccttctgatgctggccctgctggc 46601807
Query: 123 atgggttgctctggctgaccaag 145
|||||||||||||||||||||||
Sbjct: 46601806 atgggttgctctggctgaccaag 46601784
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,761,187
Number of extensions: 470
Number of successful extensions: 470
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 16
Length of query: 1458
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1437
Effective length of database: 2,808,413,156
Effective search space: 4035689705172
Effective search space used: 4035689705172
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)