Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000777
(1000 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001026941.2| calcineurin-like phosphoesterase domain-cont... 444 e-125
Alignment gi|XP_002698049.1| PREDICTED: hypothetical protein [Bos taurus]. 196 4e-50
>ref|NP_001026941.2| calcineurin-like phosphoesterase domain-containing protein 1 [Bos
taurus].
Length = 313
Score = 444 bits (1142), Expect = e-125
Identities = 208/239 (87%), Positives = 219/239 (91%)
Frame = +2
Query: 53 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 232
MS EAG VFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAW+TGDCDNGGDE
Sbjct: 1 MSTAEAGGVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWATGDCDNGGDE 60
Query: 233 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP 412
W QEIRL EQAVQAINKLNPKPKFFVLCGDL+HAMPG PWRKEQT+DLQRVL+ VD +IP
Sbjct: 61 WEQEIRLAEQAVQAINKLNPKPKFFVLCGDLVHAMPGRPWRKEQTEDLQRVLRTVDSDIP 120
Query: 413 LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA 592
LV VSGNHDVGN+PTPETIAEFQ+TWGDDYFSFWVGGVLFLVLNSQFL+DASRCPALKQ
Sbjct: 121 LVLVSGNHDVGNVPTPETIAEFQRTWGDDYFSFWVGGVLFLVLNSQFLYDASRCPALKQE 180
Query: 593 QDQWLDQQLSVARLRACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAGS 769
D WLDQQL A RACRHA+VFQHIPLFLQSI E+DDYFNLT SVRKEMADKF AG+
Sbjct: 181 HDHWLDQQLRTAGQRACRHAVVFQHIPLFLQSIGEDDDYFNLTKSVRKEMADKFVEAGT 239
>ref|XP_002698049.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 110
Score = 196 bits (497), Expect = 4e-50
Identities = 90/97 (92%), Positives = 92/97 (94%)
Frame = +2
Query: 53 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 232
MS EAG VFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAW+TGDCDNGGDE
Sbjct: 1 MSTAEAGGVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWATGDCDNGGDE 60
Query: 233 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG 343
W QEIRL EQAVQAINKLNPKPKFFVLCGDL+HAMPG
Sbjct: 61 WEQEIRLAEQAVQAINKLNPKPKFFVLCGDLVHAMPG 97
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,156,550
Number of extensions: 1078191
Number of successful extensions: 3544
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3539
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000777
(1000 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536969.2| PREDICTED: hypothetical protein XP_536969 [Cani... 428 e-120
>ref|XP_536969.2| PREDICTED: hypothetical protein XP_536969 [Canis familiaris].
Length = 313
Score = 428 bits (1100), Expect = e-120
Identities = 204/238 (85%), Positives = 215/238 (90%)
Frame = +2
Query: 53 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 232
MSA EAG VF RARGRTLDAF SEKEREWKGPFYFIQGADPQFGLMKAWSTGD D+GGDE
Sbjct: 1 MSAAEAGGVFRRARGRTLDAFPSEKEREWKGPFYFIQGADPQFGLMKAWSTGDSDSGGDE 60
Query: 233 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP 412
WGQEIRLTEQAVQAINKL PKP+FFVLCGDLIHAMPG PWRKEQT DLQRVL VD +IP
Sbjct: 61 WGQEIRLTEQAVQAINKLKPKPRFFVLCGDLIHAMPGMPWRKEQTADLQRVLTQVDSDIP 120
Query: 413 LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA 592
LV VSGNHDVGN PTPET+AEFQQTWGDDYFSFWVGGVL LVLNSQF +DASRCPALKQA
Sbjct: 121 LVLVSGNHDVGNTPTPETVAEFQQTWGDDYFSFWVGGVLCLVLNSQFWYDASRCPALKQA 180
Query: 593 QDQWLDQQLSVARLRACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAG 766
QDQWLDQQLS+ C+HAIVFQHIPLFL+SIDE+DDYFNLT SVRKE+A+K A AG
Sbjct: 181 QDQWLDQQLSIVGQHKCQHAIVFQHIPLFLRSIDEDDDYFNLTKSVRKEIANKLAGAG 238
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,473,137
Number of extensions: 1033648
Number of successful extensions: 3701
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3697
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000777
(1000 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060810.2| calcineurin-like phosphoesterase domain-contain... 409 e-114
Alignment gi|NP_001092925.1| calcineurin-like phosphoesterase domain-cont... 188 8e-48
>ref|NP_060810.2| calcineurin-like phosphoesterase domain-containing protein 1
isoform a [Homo sapiens].
Length = 314
Score = 409 bits (1050), Expect = e-114
Identities = 194/239 (81%), Positives = 213/239 (89%), Gaps = 1/239 (0%)
Frame = +2
Query: 53 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 232
MSA EAG VFHRARGRTL AF +EKE EWKGPFYFI GADPQFGL+KAWSTGDCDNGGDE
Sbjct: 1 MSAAEAGGVFHRARGRTLAAFPAEKESEWKGPFYFILGADPQFGLIKAWSTGDCDNGGDE 60
Query: 233 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP 412
W QEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG PWR EQT+DL+RVL+AVD IP
Sbjct: 61 WEQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGKPWRTEQTEDLKRVLRAVDRAIP 120
Query: 413 LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA 592
LV VSGNHD+GN PT ET+ EF +TWGDDYFSFWVGGVLFLVLNSQF + S+CP+LKQA
Sbjct: 121 LVLVSGNHDIGNTPTAETVEEFCRTWGDDYFSFWVGGVLFLVLNSQFYENPSKCPSLKQA 180
Query: 593 QDQWLDQQLSVARLRACRHAIVFQHIPLFLQSIDEEDD-YFNLTTSVRKEMADKFARAG 766
QDQWLD+QLS+AR R C+HAIVFQHIPLFL+SIDE+DD YFNL+ S RK++ADKF AG
Sbjct: 181 QDQWLDEQLSIARQRHCQHAIVFQHIPLFLESIDEDDDYYFNLSKSTRKKLADKFIHAG 239
>ref|NP_001092925.1| calcineurin-like phosphoesterase domain-containing protein 1
isoform b [Homo sapiens].
Length = 172
Score = 188 bits (477), Expect = 8e-48
Identities = 88/97 (90%), Positives = 90/97 (92%)
Frame = +2
Query: 53 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 232
MSA EAG VFHRARGRTL AF +EKE EWKGPFYFI GADPQFGL+KAWSTGDCDNGGDE
Sbjct: 1 MSAAEAGGVFHRARGRTLAAFPAEKESEWKGPFYFILGADPQFGLIKAWSTGDCDNGGDE 60
Query: 233 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG 343
W QEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG
Sbjct: 61 WEQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG 97
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,580,840
Number of extensions: 1004856
Number of successful extensions: 3543
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3533
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000777
(1000 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666179.2| calcineurin-like phosphoesterase domain-contain... 436 e-122
>ref|NP_666179.2| calcineurin-like phosphoesterase domain-containing protein 1 [Mus
musculus].
Length = 312
Score = 436 bits (1121), Expect = e-122
Identities = 203/238 (85%), Positives = 221/238 (92%)
Frame = +2
Query: 53 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 232
MSA EA DVFHRARGRTLDAFSSEKEREWKGPFYF+QGAD QFGLMKAWSTG+CD GGDE
Sbjct: 1 MSAMEAADVFHRARGRTLDAFSSEKEREWKGPFYFVQGADTQFGLMKAWSTGNCDAGGDE 60
Query: 233 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP 412
WGQEIRLTEQAV+AINKLNPKPKFFVLCGDL+HAMPGTPWR+EQT+DLQRVLKAVD +IP
Sbjct: 61 WGQEIRLTEQAVEAINKLNPKPKFFVLCGDLVHAMPGTPWRQEQTRDLQRVLKAVDQDIP 120
Query: 413 LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA 592
LV VSGNHD+GN PT ET+ EF QTWGDDYFSFWVGGVLFLVLNSQFL+DASRCPALKQA
Sbjct: 121 LVMVSGNHDLGNAPTAETVEEFCQTWGDDYFSFWVGGVLFLVLNSQFLYDASRCPALKQA 180
Query: 593 QDQWLDQQLSVARLRACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAG 766
QD WLDQQL++A + C+HAIVFQHIPLFLQSIDE+DDYFNLT +VRKE+A+K RAG
Sbjct: 181 QDHWLDQQLNIAEQKQCQHAIVFQHIPLFLQSIDEDDDYFNLTKTVRKELAEKLTRAG 238
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,768,189
Number of extensions: 835540
Number of successful extensions: 2865
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2856
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000777
(1000 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230510.1| calcineurin-like phosphoesterase domain cont... 494 e-140
Alignment gi|XP_003124623.2| PREDICTED: calcineurin-like phosphoesterase ... 459 e-129
Alignment gi|XP_003354640.1| PREDICTED: calcineurin-like phosphoesterase ... 209 3e-54
>ref|NP_001230510.1| calcineurin-like phosphoesterase domain containing 1 [Sus scrofa].
Length = 313
Score = 494 bits (1272), Expect = e-140
Identities = 237/238 (99%), Positives = 237/238 (99%)
Frame = +2
Query: 53 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 232
MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE
Sbjct: 1 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 60
Query: 233 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP 412
WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP
Sbjct: 61 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP 120
Query: 413 LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA 592
LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA
Sbjct: 121 LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA 180
Query: 593 QDQWLDQQLSVARLRACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAG 766
QDQWLDQQLSVAR RACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAG
Sbjct: 181 QDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAG 238
>ref|XP_003124623.2| PREDICTED: calcineurin-like phosphoesterase domain-containing
protein 1-like [Sus scrofa].
Length = 247
Score = 459 bits (1181), Expect = e-129
Identities = 218/219 (99%), Positives = 218/219 (99%)
Frame = +2
Query: 188 MKAWSTGDCDNGGDEWGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQT 367
MKAWSTGDCDNGGDEWGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQT
Sbjct: 1 MKAWSTGDCDNGGDEWGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQT 60
Query: 368 KDLQRVLKAVDGEIPLVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNS 547
KDLQRVLKAVDGEIPLVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNS
Sbjct: 61 KDLQRVLKAVDGEIPLVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNS 120
Query: 548 QFLFDASRCPALKQAQDQWLDQQLSVARLRACRHAIVFQHIPLFLQSIDEEDDYFNLTTS 727
QFLFDASRCPALKQAQDQWLDQQLSVAR RACRHAIVFQHIPLFLQSIDEEDDYFNLTTS
Sbjct: 121 QFLFDASRCPALKQAQDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDDYFNLTTS 180
Query: 728 VRKEMADKFARAGSAWTPRCLGGRVVLEKRWPDPSPAPL 844
VRKEMADKFARAGSAWTPRCLGGRVVLEKRWPDPSPAPL
Sbjct: 181 VRKEMADKFARAGSAWTPRCLGGRVVLEKRWPDPSPAPL 219
>ref|XP_003354640.1| PREDICTED: calcineurin-like phosphoesterase domain-containing
protein 1-like, partial [Sus scrofa].
Length = 100
Score = 209 bits (531), Expect = 3e-54
Identities = 97/97 (100%), Positives = 97/97 (100%)
Frame = +2
Query: 53 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 232
MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE
Sbjct: 1 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 60
Query: 233 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG 343
WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG
Sbjct: 61 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG 97
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,204,026
Number of extensions: 829734
Number of successful extensions: 2253
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2243
Number of HSP's successfully gapped: 3
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000777
(1000 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 987 0.0
gb|JH118548.1| Sus scrofa unplaced genomic scaffold ChrUScaf947 440 e-121
>Sscrofa_Chr03
|| Length = 144787322
Score = 987 bits (498), Expect = 0.0
Identities = 504/506 (99%)
Strand = Plus / Plus
Query: 338 ccaggaacgccctggcggaaggagcagacgaaggacctgcagcgcgtgctcaaggcggtg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29513742 ccaggaacgccctggcggaaggagcagacgaaggacctgcagcgcgtgctcaaggcggtg 29513801
Query: 398 gatggcgagatcccgctggtcttcgtcagcggcaaccacgacgtgggcaacatccccacc 457
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 29513802 gatggcgagatcccgctggtcttcgtcagtggcaaccacgacgtgggcaacatccccacc 29513861
Query: 458 cccgagaccatcgcggagttccagcagacgtggggggacgactatttcagcttctgggtg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29513862 cccgagaccatcgcggagttccagcagacgtggggggacgactatttcagcttctgggtg 29513921
Query: 518 gggggcgtcctgttcctcgtgctcaactcccagttcctgttcgacgcctccaggtgcccc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29513922 gggggcgtcctgttcctcgtgctcaactcccagttcctgttcgacgcctccaggtgcccc 29513981
Query: 578 gccctgaagcaggcccaggaccagtggctggaccagcagctgagcgtcgcccgcctgcgc 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 29513982 gccctgaagcaggcccaggaccagtggctggaccagcagctgagcgtcgcccgccggcgc 29514041
Query: 638 gcgtgccggcacgccatcgtcttccagcacatcccgctcttcctgcagagcatcgatgag 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29514042 gcgtgccggcacgccatcgtcttccagcacatcccgctcttcctgcagagcatcgatgag 29514101
Query: 698 gaggacgactacttcaacctcaccacgtccgtgcggaaggagatggcagacaagttcgcc 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29514102 gaggacgactacttcaacctcaccacgtccgtgcggaaggagatggcagacaagttcgcc 29514161
Query: 758 agagcaggtagcgcctggacccccaggtgtctaggtggaagggtggttctggagaagagg 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29514162 agagcaggtagcgcctggacccccaggtgtctaggtggaagggtggttctggagaagagg 29514221
Query: 818 tggccagatccttcccctgcccctct 843
||||||||||||||||||||||||||
Sbjct: 29514222 tggccagatccttcccctgcccctct 29514247
Score = 440 bits (222), Expect = e-121
Identities = 222/222 (100%)
Strand = Plus / Plus
Query: 121 agaaaaggaaagggaatggaagggcccattctacttcatccaaggtgcagatccacagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29456797 agaaaaggaaagggaatggaagggcccattctacttcatccaaggtgcagatccacagtt 29456856
Query: 181 tggactgatgaaggcctggtccaccggggactgtgacaatggtggtgatgagtggggaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29456857 tggactgatgaaggcctggtccaccggggactgtgacaatggtggtgatgagtggggaca 29456916
Query: 241 ggagatccgcctcactgagcaagccgtgcaggccatcaacaagctgaaccccaaacccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29456917 ggagatccgcctcactgagcaagccgtgcaggccatcaacaagctgaaccccaaacccaa 29456976
Query: 301 attctttgttctgtgtggggacctcatccacgccatgccagg 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29456977 attctttgttctgtgtggggacctcatccacgccatgccagg 29457018
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1 cgttgctccctcccacgcagtgcactcagtcaaggccagaaactcgctcgccatgtccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29432743 cgttgctccctcccacgcagtgcactcagtcaaggccagaaactcgctcgccatgtccgc 29432802
Query: 61 tgaggaggcgggggatgttttccatagagcccgtggcagaactctggacgcgttttcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29432803 tgaggaggcgggggatgttttccatagagcccgtggcagaactctggacgcgttttcctc 29432862
Query: 121 ag 122
||
Sbjct: 29432863 ag 29432864
Score = 83.8 bits (42), Expect = 2e-13
Identities = 49/50 (98%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 952 atacacagaggatgctcgtgggaagga-tcgagcatcttctctggggatc 1000
||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 29514357 atacacagaggatgctcgtgggaaggattcgagcatcttctctggggatc 29514406
>gb|JH118548.1| Sus scrofa unplaced genomic scaffold ChrUScaf947
Length = 111892
Score = 440 bits (222), Expect = e-121
Identities = 222/222 (100%)
Strand = Plus / Minus
Query: 121 agaaaaggaaagggaatggaagggcccattctacttcatccaaggtgcagatccacagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98964 agaaaaggaaagggaatggaagggcccattctacttcatccaaggtgcagatccacagtt 98905
Query: 181 tggactgatgaaggcctggtccaccggggactgtgacaatggtggtgatgagtggggaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98904 tggactgatgaaggcctggtccaccggggactgtgacaatggtggtgatgagtggggaca 98845
Query: 241 ggagatccgcctcactgagcaagccgtgcaggccatcaacaagctgaaccccaaacccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98844 ggagatccgcctcactgagcaagccgtgcaggccatcaacaagctgaaccccaaacccaa 98785
Query: 301 attctttgttctgtgtggggacctcatccacgccatgccagg 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98784 attctttgttctgtgtggggacctcatccacgccatgccagg 98743
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,650,959
Number of extensions: 168
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 5
Length of query: 1000
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 979
Effective length of database: 2,808,413,156
Effective search space: 2749436479724
Effective search space used: 2749436479724
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)