Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000785
(1427 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030516.1| methyltransferase like 7A [Bos taurus]. 404 e-113
Alignment gi|XP_001249763.1| PREDICTED: methyltransferase like 7A-like is... 403 e-112
Alignment gi|XP_002687632.1| PREDICTED: DILV594-like [Bos taurus]. 268 9e-72
Alignment gi|XP_002684200.1| PREDICTED: DILV594-like [Bos taurus]. 268 9e-72
Alignment gi|XP_002687315.1| PREDICTED: hypothetical protein [Bos taurus]. 263 4e-70
Alignment gi|XP_001790531.1| PREDICTED: hypothetical protein [Bos taurus]. 263 4e-70
>ref|NP_001030516.1| methyltransferase like 7A [Bos taurus].
Length = 244
Score = 404 bits (1039), Expect = e-113
Identities = 186/244 (76%), Positives = 213/244 (87%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFS 561
MALTIF+L+LA+ ILAFPMYLLDFLG+W+W+CK+WFPYFL RF+VMYN+ M SKK+ELFS
Sbjct: 1 MALTIFILRLAVCILAFPMYLLDFLGLWNWICKQWFPYFLARFTVMYNKQMESKKQELFS 60
Query: 562 NLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFE 741
NL+EF TG NFKFYP GC+V C+DPNPNFE+FLIKSIA+NRHLQFE
Sbjct: 61 NLREFMGPSGKLSLLELGCGTGANFKFYPSGCQVTCVDPNPNFEKFLIKSIAQNRHLQFE 120
Query: 742 RFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRPGGAFYFMEHVAAKP 921
RF+V+ GE+MHQVA GS+DVVVCTLVLCSVKNQ+++LQEVCRVLRPGGAFYFMEHVA KP
Sbjct: 121 RFIVAAGENMHQVASGSMDVVVCTLVLCSVKNQEQILQEVCRVLRPGGAFYFMEHVADKP 180
Query: 922 SSWISFWQQVLDPVWHLLFDGCYLSRESWKALERASFSTLKLQHLEAPLPWELVRPHIYG 1101
S+W FWQQVLDPVW+LLFDGC L+RESWKALE+A FS LKLQHL+APL WELVRPHIYG
Sbjct: 181 STWNYFWQQVLDPVWYLLFDGCNLTRESWKALEKARFSKLKLQHLQAPLSWELVRPHIYG 240
Query: 1102 YAVK 1113
YAVK
Sbjct: 241 YAVK 244
>ref|XP_001249763.1| PREDICTED: methyltransferase like 7A-like isoform 1 [Bos taurus].
Length = 244
Score = 403 bits (1036), Expect = e-112
Identities = 186/244 (76%), Positives = 212/244 (86%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFS 561
MALTIF+L LA+ ILAFPMYLLDFLG+W+W+CK+WFPYFL RF+VMYN+ M SKK+ELFS
Sbjct: 1 MALTIFILWLAVCILAFPMYLLDFLGLWNWICKQWFPYFLARFTVMYNKQMESKKQELFS 60
Query: 562 NLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFE 741
NL+EF TG NFKFYP GC+V C+DPNPNFE+FLIKSIA+NRHLQFE
Sbjct: 61 NLREFMGPSGKLSLLELGCGTGANFKFYPSGCQVTCVDPNPNFEKFLIKSIAQNRHLQFE 120
Query: 742 RFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRPGGAFYFMEHVAAKP 921
RF+V+ GE+MHQVA GS+DVVVCTLVLCSVKNQ+++LQEVCRVLRPGGAFYFMEHVA KP
Sbjct: 121 RFIVAAGENMHQVASGSMDVVVCTLVLCSVKNQEQILQEVCRVLRPGGAFYFMEHVADKP 180
Query: 922 SSWISFWQQVLDPVWHLLFDGCYLSRESWKALERASFSTLKLQHLEAPLPWELVRPHIYG 1101
S+W FWQQVLDPVW+LLFDGC L+RESWKALE+A FS LKLQHL+APL WELVRPHIYG
Sbjct: 181 STWNYFWQQVLDPVWYLLFDGCNLTRESWKALEKARFSKLKLQHLQAPLSWELVRPHIYG 240
Query: 1102 YAVK 1113
YAVK
Sbjct: 241 YAVK 244
>ref|XP_002687632.1| PREDICTED: DILV594-like [Bos taurus].
Length = 244
Score = 268 bits (685), Expect = 9e-72
Identities = 127/244 (52%), Positives = 166/244 (68%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFS 561
M + +LQL + +L P++L+ LG W +CK +FPY + +V NR M +KKRELFS
Sbjct: 1 MDALVRLLQLLVFLLTLPLHLMALLGFWEPLCKTYFPYLMAVLTVKNNRVMENKKRELFS 60
Query: 562 NLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFE 741
+ A TG NF+FYP GC++ C+DPNP+FE+FL KS+AENRHL++E
Sbjct: 61 QINGLAGTSGKVALLELGCGTGANFRFYPAGCKITCLDPNPHFEKFLTKSMAENRHLEYE 120
Query: 742 RFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRPGGAFYFMEHVAAKP 921
RFVV+ GEDM Q+ADGS+D VV TLVLCSV++ RVLQEV RVLRPGG F+F EH+A
Sbjct: 121 RFVVAFGEDMRQLADGSMDAVVSTLVLCSVESPKRVLQEVRRVLRPGGVFFFWEHMAEPR 180
Query: 922 SSWISFWQQVLDPVWHLLFDGCYLSRESWKALERASFSTLKLQHLEAPLPWELVRPHIYG 1101
SW WQQVL+P W + DGC+L+RE+W+ LE A FS L+++ P+ W V PHI G
Sbjct: 181 GSWAFLWQQVLEPTWKHIGDGCHLTRETWRDLENAQFSELQVEQQPPPIKWLPVGPHIMG 240
Query: 1102 YAVK 1113
AVK
Sbjct: 241 KAVK 244
>ref|XP_002684200.1| PREDICTED: DILV594-like [Bos taurus].
Length = 244
Score = 268 bits (685), Expect = 9e-72
Identities = 127/244 (52%), Positives = 166/244 (68%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFS 561
M + +LQL + +L P++L+ LG W +CK +FPY + +V NR M +KKRELFS
Sbjct: 1 MDALVRLLQLLVFLLTLPLHLMALLGFWEPLCKTYFPYLMAVLTVKNNRVMENKKRELFS 60
Query: 562 NLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFE 741
+ A TG NF+FYP GC++ C+DPNP+FE+FL KS+AENRHL++E
Sbjct: 61 QINGLAGTSGKVALLELGCGTGANFRFYPAGCKITCLDPNPHFEKFLTKSMAENRHLEYE 120
Query: 742 RFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRPGGAFYFMEHVAAKP 921
RFVV+ GEDM Q+ADGS+D VV TLVLCSV++ RVLQEV RVLRPGG F+F EH+A
Sbjct: 121 RFVVAFGEDMRQLADGSMDAVVSTLVLCSVESPKRVLQEVRRVLRPGGVFFFWEHMAEPR 180
Query: 922 SSWISFWQQVLDPVWHLLFDGCYLSRESWKALERASFSTLKLQHLEAPLPWELVRPHIYG 1101
SW WQQVL+P W + DGC+L+RE+W+ LE A FS L+++ P+ W V PHI G
Sbjct: 181 GSWAFLWQQVLEPTWKHIGDGCHLTRETWRDLENAQFSELQVEQQPPPIKWLPVGPHIMG 240
Query: 1102 YAVK 1113
AVK
Sbjct: 241 KAVK 244
>ref|XP_002687315.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 179
Score = 263 bits (671), Expect = 4e-70
Identities = 120/166 (72%), Positives = 142/166 (85%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFS 561
MALTIF+L+LA+ ILAFPMYLLDFLG+W+W+CK+WFPYFL RF+VMYN+ M SKK+ELFS
Sbjct: 1 MALTIFILRLAVCILAFPMYLLDFLGLWNWICKQWFPYFLARFTVMYNKQMESKKQELFS 60
Query: 562 NLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFE 741
NL+EF TG NFKFYP GC+V C+DPNPNFE+FLIKSIA+NRHLQFE
Sbjct: 61 NLREFTGPSGKLSLLELGCGTGANFKFYPSGCQVTCVDPNPNFEKFLIKSIAQNRHLQFE 120
Query: 742 RFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRP 879
RF+V+ GE+MHQVA GS+DVVVCTLVLCSVKNQ+++LQEVCRVLRP
Sbjct: 121 RFIVAAGENMHQVASGSMDVVVCTLVLCSVKNQEQILQEVCRVLRP 166
>ref|XP_001790531.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 179
Score = 263 bits (671), Expect = 4e-70
Identities = 120/166 (72%), Positives = 142/166 (85%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFS 561
MALTIF+L+LA+ ILAFPMYLLDFLG+W+W+CK+WFPYFL RF+VMYN+ M SKK+ELFS
Sbjct: 1 MALTIFILRLAVCILAFPMYLLDFLGLWNWICKQWFPYFLARFTVMYNKQMESKKQELFS 60
Query: 562 NLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFE 741
NL+EF TG NFKFYP GC+V C+DPNPNFE+FLIKSIA+NRHLQFE
Sbjct: 61 NLREFTGPSGKLSLLELGCGTGANFKFYPSGCQVTCVDPNPNFEKFLIKSIAQNRHLQFE 120
Query: 742 RFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRP 879
RF+V+ GE+MHQVA GS+DVVVCTLVLCSVKNQ+++LQEVCRVLRP
Sbjct: 121 RFIVAAGENMHQVASGSMDVVVCTLVLCSVKNQEQILQEVCRVLRP 166
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,543,039
Number of extensions: 1700657
Number of successful extensions: 5855
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5846
Number of HSP's successfully gapped: 6
Length of query: 475
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 369
Effective length of database: 14,174,046
Effective search space: 5230222974
Effective search space used: 5230222974
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000785
(1427 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531623.2| PREDICTED: hypothetical protein XP_531623 [Cani... 262 5e-70
Alignment gi|XP_543670.2| PREDICTED: similar to UbiE-YGHL1 fusion protein... 231 2e-60
>ref|XP_531623.2| PREDICTED: hypothetical protein XP_531623 [Canis familiaris].
Length = 244
Score = 262 bits (670), Expect = 5e-70
Identities = 127/244 (52%), Positives = 160/244 (65%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFS 561
M + +LQL L +L P++L+ LG W +CK +FPY + + NR M KK+ELF
Sbjct: 1 MDALVCLLQLLLLLLTLPLHLMALLGCWQPLCKAYFPYLMAVLTAKGNRKMERKKQELFG 60
Query: 562 NLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFE 741
+ TG NF+FYP GCR+ C+DPNP+FE+FL KS+AENRHLQ+E
Sbjct: 61 QINRLTGASGKVALLELGCGTGANFQFYPAGCRITCLDPNPHFEKFLTKSMAENRHLQYE 120
Query: 742 RFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRPGGAFYFMEHVAAKP 921
+FVV++GEDM QVAD S+DVVV TLVLCSV++ RVLQEV RVLRPGG F F EHVA
Sbjct: 121 QFVVASGEDMRQVADSSMDVVVSTLVLCSVQSPRRVLQEVKRVLRPGGLFLFWEHVAEPR 180
Query: 922 SSWISFWQQVLDPVWHLLFDGCYLSRESWKALERASFSTLKLQHLEAPLPWELVRPHIYG 1101
SW WQQV++P W + DGC L+RE+WK LE A FS L+++ P W V PHI G
Sbjct: 181 GSWAFLWQQVVEPTWKHIGDGCCLTRETWKDLESAQFSHLQMEQQPPPFKWLPVGPHIMG 240
Query: 1102 YAVK 1113
AVK
Sbjct: 241 KAVK 244
>ref|XP_543670.2| PREDICTED: similar to UbiE-YGHL1 fusion protein [Canis familiaris].
Length = 258
Score = 231 bits (588), Expect = 2e-60
Identities = 111/167 (66%), Positives = 133/167 (79%), Gaps = 1/167 (0%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKW-FPYFLVRFSVMYNRDMASKKRELF 558
MA+ + VL+L + +LA P++LL LG+WS +CK+W FP+FL RFSVMYN MA +KRELF
Sbjct: 1 MAVAVVVLRLLVCLLASPLFLLHALGLWSQICKRWWFPHFLARFSVMYNERMAGRKRELF 60
Query: 559 SNLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQF 738
+LQ FA TG NF+FYPPGCRV C+DPNPNFE+FLIKSIAENRHLQF
Sbjct: 61 GSLQAFAGPSGRLSLLEVGCGTGANFQFYPPGCRVTCVDPNPNFEKFLIKSIAENRHLQF 120
Query: 739 ERFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRP 879
ERFVV+ GEDM QVADGSVDVVVCTLVLCSV++Q ++L+EVCRVLRP
Sbjct: 121 ERFVVAAGEDMPQVADGSVDVVVCTLVLCSVRDQGQILREVCRVLRP 167
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,983,614
Number of extensions: 1747335
Number of successful extensions: 5978
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5974
Number of HSP's successfully gapped: 2
Length of query: 475
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 368
Effective length of database: 15,307,552
Effective search space: 5633179136
Effective search space used: 5633179136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000785
(1427 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_054752.3| methyltransferase-like protein 7A precursor [Ho... 417 e-117
Alignment gi|NP_689850.2| methyltransferase-like protein 7B precursor [Ho... 275 1e-73
>ref|NP_054752.3| methyltransferase-like protein 7A precursor [Homo sapiens].
Length = 244
Score = 417 bits (1073), Expect = e-117
Identities = 195/244 (79%), Positives = 215/244 (88%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFS 561
M LTIF+L+LA+ IL FP+YLL+FLG+WSW+CKKWFPYFLVRF+V+YN MASKKRELFS
Sbjct: 1 MELTIFILRLAIYILTFPLYLLNFLGLWSWICKKWFPYFLVRFTVIYNEQMASKKRELFS 60
Query: 562 NLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFE 741
NLQEFA TG NFKFYPPGCRV CIDPNPNFE+FLIKSIAENRHLQFE
Sbjct: 61 NLQEFAGPSGKLSLLEVGCGTGANFKFYPPGCRVTCIDPNPNFEKFLIKSIAENRHLQFE 120
Query: 742 RFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRPGGAFYFMEHVAAKP 921
RFVV+ GE+MHQVADGSVDVVVCTLVLCSVKNQ+R+L+EVCRVLRPGGAFYFMEHVAA+
Sbjct: 121 RFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILREVCRVLRPGGAFYFMEHVAAEC 180
Query: 922 SSWISFWQQVLDPVWHLLFDGCYLSRESWKALERASFSTLKLQHLEAPLPWELVRPHIYG 1101
S+W FWQQVLDP WHLLFDGC L+RESWKALERASFS LKLQH++APL WELVRPHIYG
Sbjct: 181 STWNYFWQQVLDPAWHLLFDGCNLTRESWKALERASFSKLKLQHIQAPLSWELVRPHIYG 240
Query: 1102 YAVK 1113
YAVK
Sbjct: 241 YAVK 244
>ref|NP_689850.2| methyltransferase-like protein 7B precursor [Homo sapiens].
Length = 244
Score = 275 bits (702), Expect = 1e-73
Identities = 131/244 (53%), Positives = 166/244 (68%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFS 561
M + + +LQL + +L P++L+ LG W +CK +FPY + + NR M SKKRELFS
Sbjct: 1 MDILVPLLQLLVLLLTLPLHLMALLGCWQPLCKSYFPYLMAVLTPKSNRKMESKKRELFS 60
Query: 562 NLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFE 741
++ TG NF+FYPPGCRV C+DPNP+FE+FL KS+AENRHLQ+E
Sbjct: 61 QIKGLTGASGKVALLELGCGTGANFQFYPPGCRVTCLDPNPHFEKFLTKSMAENRHLQYE 120
Query: 742 RFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRPGGAFYFMEHVAAKP 921
RFVV+ GEDM Q+ADGS+DVVVCTLVLCSV++ +VLQEV RVLRPGG +F EHVA
Sbjct: 121 RFVVAPGEDMRQLADGSMDVVVCTLVLCSVQSPRKVLQEVRRVLRPGGVLFFWEHVAEPY 180
Query: 922 SSWISFWQQVLDPVWHLLFDGCYLSRESWKALERASFSTLKLQHLEAPLPWELVRPHIYG 1101
SW WQQV +P W + DGC L+RE+WK LE A FS ++++ PL W V PHI G
Sbjct: 181 GSWAFMWQQVFEPTWKHIGDGCCLTRETWKDLENAQFSEIQMERQPPPLKWLPVGPHIMG 240
Query: 1102 YAVK 1113
AVK
Sbjct: 241 KAVK 244
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,862,763
Number of extensions: 1715389
Number of successful extensions: 5828
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5819
Number of HSP's successfully gapped: 2
Length of query: 475
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 369
Effective length of database: 14,802,980
Effective search space: 5462299620
Effective search space used: 5462299620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000785
(1427 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081610.2| methyltransferase-like protein 7A [Mus musculus]. 380 e-105
Alignment gi|NP_955771.2| methyltransferase like 7A2 [Mus musculus]. 361 e-100
Alignment gi|NP_001074940.1| UbiE3 protein [Mus musculus]. 358 6e-99
Alignment gi|NP_082129.2| methyltransferase-like protein 7B precursor [Mu... 263 2e-70
Alignment gi|NP_001019843.1| Mettl7a2-Higd1c readthrough transcript [Mus ... 244 2e-64
>ref|NP_081610.2| methyltransferase-like protein 7A [Mus musculus].
Length = 244
Score = 380 bits (975), Expect = e-105
Identities = 177/244 (72%), Positives = 200/244 (81%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFS 561
M L + L+L + LA PM+LL+ LG+WSW+CKK FPYFL RFSVMYN MAS+KRELFS
Sbjct: 1 MTLAVLALRLVVCTLALPMFLLNLLGLWSWVCKKCFPYFLKRFSVMYNEQMASQKRELFS 60
Query: 562 NLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFE 741
NLQEFA TG NFKFYPPGCRV CIDPNPNFE+FL KS+AENR LQFE
Sbjct: 61 NLQEFAGPSGKLTLLEVGCGTGANFKFYPPGCRVTCIDPNPNFEKFLFKSVAENRQLQFE 120
Query: 742 RFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRPGGAFYFMEHVAAKP 921
RFVV+ GEDMHQV DGSVDVVVCTLVLCSVKNQ+++L+EVCRVL+PGGAFYFMEHVA +
Sbjct: 121 RFVVAAGEDMHQVTDGSVDVVVCTLVLCSVKNQEKILREVCRVLKPGGAFYFMEHVADER 180
Query: 922 SSWISFWQQVLDPVWHLLFDGCYLSRESWKALERASFSTLKLQHLEAPLPWELVRPHIYG 1101
S+W FWQQVLDPVW L FDGC L+RESWK +E+ASFS LKLQH++APL W LVRPHIYG
Sbjct: 181 STWNYFWQQVLDPVWFLFFDGCNLTRESWKTIEQASFSKLKLQHIQAPLSWTLVRPHIYG 240
Query: 1102 YAVK 1113
YAVK
Sbjct: 241 YAVK 244
>ref|NP_955771.2| methyltransferase like 7A2 [Mus musculus].
Length = 244
Score = 361 bits (927), Expect = e-100
Identities = 169/244 (69%), Positives = 199/244 (81%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFS 561
M L + ++L + I+AFPM+LL+ LG+WSW+CKK FPYFL RF+++YN MAS KRELFS
Sbjct: 1 MTLAVQAMRLVVCIVAFPMFLLNLLGMWSWVCKKCFPYFLKRFAMIYNWKMASLKRELFS 60
Query: 562 NLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFE 741
NLQEFA TG NFKFYPPGCRV CIDPNPNFE+FL KS+AENR LQFE
Sbjct: 61 NLQEFAGPSGKLTLLEVGCGTGANFKFYPPGCRVTCIDPNPNFEKFLFKSVAENRQLQFE 120
Query: 742 RFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRPGGAFYFMEHVAAKP 921
RFVV+ GEDMHQV DGSVDVVVCTLVLCSVKNQ+++L+EVCRVL+PGGAFYF++HVA +
Sbjct: 121 RFVVAAGEDMHQVTDGSVDVVVCTLVLCSVKNQEKILREVCRVLKPGGAFYFIDHVADER 180
Query: 922 SSWISFWQQVLDPVWHLLFDGCYLSRESWKALERASFSTLKLQHLEAPLPWELVRPHIYG 1101
S+W FWQQVL VW L FDGC L+RESWKA+E+A+FS L LQH++APLP LVRPHIYG
Sbjct: 181 STWNYFWQQVLARVWFLAFDGCNLTRESWKAIEQANFSKLNLQHIQAPLPLTLVRPHIYG 240
Query: 1102 YAVK 1113
YAVK
Sbjct: 241 YAVK 244
>ref|NP_001074940.1| UbiE3 protein [Mus musculus].
Length = 244
Score = 358 bits (919), Expect = 6e-99
Identities = 167/244 (68%), Positives = 199/244 (81%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFS 561
M L + ++L + I+AFP++LL+ LG+WSW+CKK FPYFL RF+++YN MAS K+ELFS
Sbjct: 1 MTLAVQAMRLVVCIVAFPIFLLNILGMWSWVCKKCFPYFLKRFAMIYNWKMASLKQELFS 60
Query: 562 NLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFE 741
NLQEFA TG NFKFYPPGCRV CIDPNPNFE+FL KS+AENR LQFE
Sbjct: 61 NLQEFAGPSGKLTLLEVGCGTGANFKFYPPGCRVTCIDPNPNFEKFLFKSVAENRQLQFE 120
Query: 742 RFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRPGGAFYFMEHVAAKP 921
RFVV+ GEDMHQV DGSVDVVVCTLVLCSVKNQ+++L+EVCRVL+PGGAFYF++HVA +
Sbjct: 121 RFVVAVGEDMHQVTDGSVDVVVCTLVLCSVKNQEKILREVCRVLKPGGAFYFIDHVADER 180
Query: 922 SSWISFWQQVLDPVWHLLFDGCYLSRESWKALERASFSTLKLQHLEAPLPWELVRPHIYG 1101
S+W FWQQVL VW L FDGC L+RESWKA+E+A+FS L LQH++APLP LVRPHIYG
Sbjct: 181 STWNYFWQQVLARVWFLAFDGCNLTRESWKAIEQANFSKLNLQHIQAPLPLTLVRPHIYG 240
Query: 1102 YAVK 1113
YAVK
Sbjct: 241 YAVK 244
>ref|NP_082129.2| methyltransferase-like protein 7B precursor [Mus musculus].
Length = 244
Score = 263 bits (673), Expect = 2e-70
Identities = 128/243 (52%), Positives = 166/243 (68%)
Frame = +1
Query: 385 ALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFSN 564
AL +F LQL + +L P++LL LG W +CK +FPYF+ + + M SKKRELFS
Sbjct: 3 ALVLF-LQLLVLLLTLPLHLLALLGCWQPICKTYFPYFMAMLTARSYKKMESKKRELFSQ 61
Query: 565 LQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFER 744
+++ TG NF+FYP GC+V C+DPNPNFE+FL KS+AENRHLQ+ER
Sbjct: 62 IKDLKGTSGNVALLELGCGTGANFQFYPQGCKVTCVDPNPNFEKFLTKSMAENRHLQYER 121
Query: 745 FVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRPGGAFYFMEHVAAKPS 924
F+V+ GE+M Q+AD S+DVVVCTLVLCSV++ +VLQEV RVLRPGG +F EHVA
Sbjct: 122 FIVAYGENMKQLADSSMDVVVCTLVLCSVQSPRKVLQEVQRVLRPGGLLFFWEHVAEPQG 181
Query: 925 SWISFWQQVLDPVWHLLFDGCYLSRESWKALERASFSTLKLQHLEAPLPWELVRPHIYGY 1104
S WQ+VL+P W + DGC+L+RE+WK +ERA FS ++L+ P W V PHI G
Sbjct: 182 SRAFLWQRVLEPTWKHIGDGCHLTRETWKDIERAQFSEVQLEWQPPPFRWLPVGPHIMGK 241
Query: 1105 AVK 1113
AVK
Sbjct: 242 AVK 244
>ref|NP_001019843.1| Mettl7a2-Higd1c readthrough transcript [Mus musculus].
Length = 264
Score = 244 bits (622), Expect = 2e-64
Identities = 114/166 (68%), Positives = 134/166 (80%)
Frame = +1
Query: 382 MALTIFVLQLALRILAFPMYLLDFLGVWSWMCKKWFPYFLVRFSVMYNRDMASKKRELFS 561
M L + ++L + I+AFPM+LL+ LG+WSW+CKK FPYFL RF+++YN MAS KRELFS
Sbjct: 1 MTLAVQAMRLVVCIVAFPMFLLNLLGMWSWVCKKCFPYFLKRFAMIYNWKMASLKRELFS 60
Query: 562 NLQEFAXXXXXXXXXXXXXXTGTNFKFYPPGCRVACIDPNPNFERFLIKSIAENRHLQFE 741
NLQEFA TG NFKFYPPGCRV CIDPNPNFE+FL KS+AENR LQFE
Sbjct: 61 NLQEFAGPSGKLTLLEVGCGTGANFKFYPPGCRVTCIDPNPNFEKFLFKSVAENRQLQFE 120
Query: 742 RFVVSTGEDMHQVADGSVDVVVCTLVLCSVKNQDRVLQEVCRVLRP 879
RFVV+ GEDMHQV DGSVDVVVCTLVLCSVKNQ+++L+EVCRVL+P
Sbjct: 121 RFVVAAGEDMHQVTDGSVDVVVCTLVLCSVKNQEKILREVCRVLKP 166
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,722,269
Number of extensions: 1437847
Number of successful extensions: 4602
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4587
Number of HSP's successfully gapped: 5
Length of query: 475
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 370
Effective length of database: 12,463,779
Effective search space: 4611598230
Effective search space used: 4611598230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000785
(1427 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,741,447
Number of extensions: 1096533
Number of successful extensions: 3789
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3783
Number of HSP's successfully gapped: 0
Length of query: 475
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 372
Effective length of database: 8,779,541
Effective search space: 3265989252
Effective search space used: 3265989252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000785
(1427 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894990.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1108 0.0
gb|GL893890.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 658 0.0
gb|GL892690.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 337 1e-89
gb|GL892113.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 293 1e-76
gb|GL894501.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 291 5e-76
gb|GL892124.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 270 2e-69
>gb|GL894990.1| Sus scrofa unplaced genomic scaffold chrU_scaffold360
Length = 754
Score = 1108 bits (559), Expect = 0.0
Identities = 559/559 (100%)
Strand = Plus / Plus
Query: 3 ttttcctatcagcggtcattggagaactgagccgggtggaagccactgcgcatttaaaac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttttcctatcagcggtcattggagaactgagccgggtggaagccactgcgcatttaaaac 255
Query: 63 tccagcaggaaactaagcagcggtttccaagtaggaatcgatttataagagatcgcaatc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tccagcaggaaactaagcagcggtttccaagtaggaatcgatttataagagatcgcaatc 315
Query: 123 agctttccttctaaggaaaggctgggaaactcatttggcttcatgaaacgtaagctatga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agctttccttctaaggaaaggctgggaaactcatttggcttcatgaaacgtaagctatga 375
Query: 183 ggcacctttggccaaatatctattaattaggcgaaacaggccttttgtccaagatttgtt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggcacctttggccaaatatctattaattaggcgaaacaggccttttgtccaagatttgtt 435
Query: 243 ttcggctgcgtctttccagcacgaccagttcttctttcctcagcggctgattggctctgg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttcggctgcgtctttccagcacgaccagttcttctttcctcagcggctgattggctctgg 495
Query: 303 agtgtggccagaagcctacttcctgcaattaaaggagtcaggtctacaaccactgacctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agtgtggccagaagcctacttcctgcaattaaaggagtcaggtctacaaccactgacctg 555
Query: 363 cttatttctcttcagagggatggcgcttaccatctttgtcctccagctagccctccgcat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cttatttctcttcagagggatggcgcttaccatctttgtcctccagctagccctccgcat 615
Query: 423 cctggcatttcccatgtacctgctggactttctgggcgtgtggagctggatgtgcaaaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cctggcatttcccatgtacctgctggactttctgggcgtgtggagctggatgtgcaaaaa 675
Query: 483 atggtttccctacttcttggtgaggttcagtgtgatgtacaacagagacatggcgagcaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atggtttccctacttcttggtgaggttcagtgtgatgtacaacagagacatggcgagcaa 735
Query: 543 gaagcgggagctcttcagc 561
|||||||||||||||||||
Sbjct: 736 gaagcgggagctcttcagc 754
>gb|GL893890.1| Sus scrofa unplaced genomic scaffold chrU_scaffold261
Length = 353
Score = 658 bits (332), Expect = 0.0
Identities = 332/332 (100%)
Strand = Plus / Minus
Query: 880 ggaggagctttttatttcatggagcatgtagcagcaaagccatcaagctggatttccttc 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggaggagctttttatttcatggagcatgtagcagcaaagccatcaagctggatttccttc 273
Query: 940 tggcaacaggtcctggatcctgtgtggcaccttctgtttgatgggtgctacctgagccga 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tggcaacaggtcctggatcctgtgtggcaccttctgtttgatgggtgctacctgagccga 213
Query: 1000 gagagctggaaggccctggagcgggccagcttctccacactgaagctgcagcacttagag 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gagagctggaaggccctggagcgggccagcttctccacactgaagctgcagcacttagag 153
Query: 1060 gcccctctgccctgggagctggtgcgccctcacatctacggatatgccgtgaaatagcac 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gcccctctgccctgggagctggtgcgccctcacatctacggatatgccgtgaaatagcac 93
Query: 1120 aagcagggacttgagacctgcacggctcaaataattacaagtttgggttttacatgttaa 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 aagcagggacttgagacctgcacggctcaaataattacaagtttgggttttacatgttaa 33
Query: 1180 aatactaatcaggagatgggaacccccctccc 1211
||||||||||||||||||||||||||||||||
Sbjct: 32 aatactaatcaggagatgggaacccccctccc 1
>gb|GL892690.1| Sus scrofa unplaced genomic scaffold chrU_scaffold153
Length = 191
Score = 337 bits (170), Expect = 1e-89
Identities = 184/191 (96%)
Strand = Plus / Minus
Query: 537 gagcaagaagcgggagctcttcagcaacctgcaggagttcgctggctcctctgggaagct 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gagcaagaagcgggagctcttcagcaacctgcaggagttcgctggctcctctgggaagct 132
Query: 597 ctccctgctggagctgggctgcggcactgggaccaacttcaagttctannnnnnnggatg 656
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 131 ctccctgctggagctgggctgcggcactgggaccaacttcaagttctacccccccggatg 72
Query: 657 ccgggtggcctgtattgatcccaaccccaactttgagaggttcttgatcaagagcattgc 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ccgggtggcctgtattgatcccaaccccaactttgagaggttcttgatcaagagcattgc 12
Query: 717 cgagaaccgac 727
|||||||||||
Sbjct: 11 cgagaaccgac 1
>gb|GL892113.1| Sus scrofa unplaced genomic scaffold chrU_scaffold101
Length = 148
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 703 atcaagagcattgccgagaaccgacacctgcagtttgagcgcttcgtggtgtcgaccggg 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcaagagcattgccgagaaccgacacctgcagtttgagcgcttcgtggtgtcgaccggg 60
Query: 763 gaggacatgcaccaggtggcggacggctccgtggatgtggtggtttgcaccctggtcctg 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaggacatgcaccaggtggcggacggctccgtggatgtggtggtttgcaccctggtcctg 120
Query: 823 tgttccgtgaagaatcaggatcgggtcc 850
||||||||||||||||||||||||||||
Sbjct: 121 tgttccgtgaagaatcaggatcgggtcc 148
>gb|GL894501.1| Sus scrofa unplaced genomic scaffold chrU_scaffold316
Length = 514
Score = 291 bits (147), Expect = 5e-76
Identities = 172/179 (96%), Gaps = 1/179 (0%)
Strand = Plus / Plus
Query: 1239 atccctaaaagtttatgttataacctacttagccatttctgtcgtctcccaaagaatcca 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atccctaaaagtttatgttataacctacttagccatttctgtcgtctcccaaagaatcca 60
Query: 1299 aaacgaaaccaaacagcagctttgaaagg-aacagtgggctttcctcatcgagggctacc 1357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 aaacgaaaccaaacagcagctttgaaaggaaacagtgggctttcctcatcgagggctacc 120
Query: 1358 attgctttactaacgtcaccatttttctgttctcttgaaaatgtttacctacggatttt 1416
|||||||||||||||||||||||||||||| |||||||| |||| | ||||||||||
Sbjct: 121 attgctttactaacgtcaccatttttctgtcttcttgaaattgttaccttacggatttt 179
>gb|GL892124.1| Sus scrofa unplaced genomic scaffold chrU_scaffold102
Length = 148
Score = 270 bits (136), Expect = 2e-69
Identities = 145/148 (97%)
Strand = Plus / Plus
Query: 703 atcaagagcattgccgagaaccgacacctgcagtttgagcgcttcgtggtgtcgaccggg 762
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 atcaagagcattgccgagaaccgacgcctgcagtttgagcgcttcgtggtgtcgaccggg 60
Query: 763 gaggacatgcaccaggtggcggacggctccgtggatgtggtggtttgcaccctggtcctg 822
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 61 gaggacatgcaccaggtggcggacggcttcgtggatgtggtggtttgcaccctggtcctg 120
Query: 823 tgttccgtgaagaatcaggatcgggtcc 850
|| |||||||||||||||||||||||||
Sbjct: 121 tgctccgtgaagaatcaggatcgggtcc 148
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,496,223
Number of extensions: 301
Number of successful extensions: 301
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 6
Length of query: 1427
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1406
Effective length of database: 2,808,413,156
Effective search space: 3948628897336
Effective search space used: 3948628897336
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)