Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000805
(1270 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776512.2| insulin-like growth factor II precursor [Bos ta... 120 1e-45
Alignment gi|NP_001071296.1| insulin-like growth factor I preproprotein [... 51 1e-14
Alignment gi|NP_001172055.1| insulin preproprotein [Bos taurus]. 37 4e-06
Alignment gi|NP_776351.2| insulin preproprotein [Bos taurus]. 37 4e-06
>ref|NP_776512.2| insulin-like growth factor II precursor [Bos taurus].
Length = 179
Score = 120 bits (301), Expect(2) = 1e-45
Identities = 55/65 (84%), Positives = 58/65 (89%)
Frame = +2
Query: 1001 RVNRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRYD 1180
R+NRRSRGIVEECCFRSCDLALLETYCATPAKSERDVS TVLPD+ YPVGKFF+YD
Sbjct: 58 RINRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSASTTVLPDDVTAYPVGKFFQYD 117
Query: 1181 TWKQS 1195
WKQS
Sbjct: 118 IWKQS 122
Score = 82.4 bits (202), Expect(2) = 1e-45
Identities = 39/54 (72%), Positives = 39/54 (72%)
Frame = +1
Query: 829 MGIPMRKPXXXXXXXXXXXSCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 990
MGI K SCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR
Sbjct: 1 MGITAGKSVLVLLAFLAFASCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 54
>ref|NP_001071296.1| insulin-like growth factor I preproprotein [Bos taurus].
Length = 154
Score = 51.2 bits (121), Expect(2) = 1e-14
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCGDRGFYF++
Sbjct: 52 ETLCGAELVDALQFVCGDRGFYFNK 76
Score = 47.8 bits (112), Expect(2) = 1e-14
Identities = 23/32 (71%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA PAKS R V
Sbjct: 91 GIVDECCFRSCDLRRLEMYCAPLKPAKSARSV 122
>ref|NP_001172055.1| insulin preproprotein [Bos taurus].
Length = 105
Score = 36.6 bits (83), Expect(2) = 4e-06
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +1
Query: 913 SETLCGGELVDTLQFVCGDRGFYFS-RAGKPREPPQ 1017
++ LCG LV+ L VCG+RGF+++ +A + E PQ
Sbjct: 27 NQHLCGSHLVEALYLVCGERGFFYTPKARREVEGPQ 62
Score = 33.1 bits (74), Expect(2) = 4e-06
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 1013 RSRGIVEECCFRSCDLALLETYC 1081
+ RGIVE+CC C L LE YC
Sbjct: 82 QKRGIVEQCCASVCSLYQLENYC 104
>ref|NP_776351.2| insulin preproprotein [Bos taurus].
Length = 105
Score = 36.6 bits (83), Expect(2) = 4e-06
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +1
Query: 913 SETLCGGELVDTLQFVCGDRGFYFS-RAGKPREPPQ 1017
++ LCG LV+ L VCG+RGF+++ +A + E PQ
Sbjct: 27 NQHLCGSHLVEALYLVCGERGFFYTPKARREVEGPQ 62
Score = 33.1 bits (74), Expect(2) = 4e-06
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 1013 RSRGIVEECCFRSCDLALLETYC 1081
+ RGIVE+CC C L LE YC
Sbjct: 82 QKRGIVEQCCASVCSLYQLENYC 104
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,904,825
Number of extensions: 1663043
Number of successful extensions: 10226
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 10147
Number of HSP's successfully gapped: 8
Length of query: 423
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 318
Effective length of database: 14,207,134
Effective search space: 4517868612
Effective search space used: 4517868612
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000805
(1270 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001182754.1| insulin-like growth factor II isoform a [Can... 134 6e-52
Alignment gi|NP_001182755.1| insulin-like growth factor II isoform a [Can... 134 6e-52
Alignment gi|NP_001182756.1| insulin-like growth factor II isoform b [Can... 134 1e-51
Alignment gi|NP_001182332.1| insulin-like growth factor II isoform b [Can... 134 1e-51
Alignment gi|XP_866946.1| PREDICTED: similar to Insulin-like growth facto... 51 1e-14
Alignment gi|XP_853117.1| PREDICTED: similar to insulin-like growth facto... 51 1e-14
Alignment gi|XP_866935.1| PREDICTED: similar to insulin-like growth facto... 51 1e-14
>ref|NP_001182754.1| insulin-like growth factor II isoform a [Canis lupus familiaris].
Length = 187
Score = 134 bits (337), Expect(2) = 6e-52
Identities = 63/66 (95%), Positives = 64/66 (96%), Gaps = 1/66 (1%)
Frame = +2
Query: 1001 RVNRRS-RGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRY 1177
RV RRS RGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFF+Y
Sbjct: 63 RVTRRSSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFQY 122
Query: 1178 DTWKQS 1195
DTWKQS
Sbjct: 123 DTWKQS 128
Score = 89.7 bits (221), Expect(2) = 6e-52
Identities = 40/60 (66%), Positives = 44/60 (73%)
Frame = +1
Query: 823 IPMGIPMRKPXXXXXXXXXXXSCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSRAGKP 1002
+PMG+PM K SCC+AAYRPSETLCGGELVDTLQFVCGDRGFYF G+P
Sbjct: 1 MPMGVPMGKSILVLLTFLALASCCFAAYRPSETLCGGELVDTLQFVCGDRGFYFRLPGRP 60
>ref|NP_001182755.1| insulin-like growth factor II isoform a [Canis lupus familiaris].
Length = 187
Score = 134 bits (337), Expect(2) = 6e-52
Identities = 63/66 (95%), Positives = 64/66 (96%), Gaps = 1/66 (1%)
Frame = +2
Query: 1001 RVNRRS-RGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRY 1177
RV RRS RGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFF+Y
Sbjct: 63 RVTRRSSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFQY 122
Query: 1178 DTWKQS 1195
DTWKQS
Sbjct: 123 DTWKQS 128
Score = 89.7 bits (221), Expect(2) = 6e-52
Identities = 40/60 (66%), Positives = 44/60 (73%)
Frame = +1
Query: 823 IPMGIPMRKPXXXXXXXXXXXSCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSRAGKP 1002
+PMG+PM K SCC+AAYRPSETLCGGELVDTLQFVCGDRGFYF G+P
Sbjct: 1 MPMGVPMGKSILVLLTFLALASCCFAAYRPSETLCGGELVDTLQFVCGDRGFYFRLPGRP 60
>ref|NP_001182756.1| insulin-like growth factor II isoform b [Canis lupus familiaris].
Length = 184
Score = 134 bits (337), Expect(2) = 1e-51
Identities = 63/66 (95%), Positives = 64/66 (96%), Gaps = 1/66 (1%)
Frame = +2
Query: 1001 RVNRRS-RGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRY 1177
RV RRS RGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFF+Y
Sbjct: 60 RVTRRSSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFQY 119
Query: 1178 DTWKQS 1195
DTWKQS
Sbjct: 120 DTWKQS 125
Score = 89.0 bits (219), Expect(2) = 1e-51
Identities = 40/56 (71%), Positives = 43/56 (76%)
Frame = +1
Query: 823 IPMGIPMRKPXXXXXXXXXXXSCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 990
+PMG+PM K SCC+AAYRPSETLCGGELVDTLQFVCGDRGFYFSR
Sbjct: 1 MPMGVPMGKSILVLLTFLALASCCFAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 56
>ref|NP_001182332.1| insulin-like growth factor II isoform b [Canis lupus familiaris].
Length = 184
Score = 134 bits (337), Expect(2) = 1e-51
Identities = 63/66 (95%), Positives = 64/66 (96%), Gaps = 1/66 (1%)
Frame = +2
Query: 1001 RVNRRS-RGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRY 1177
RV RRS RGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFF+Y
Sbjct: 60 RVTRRSSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFQY 119
Query: 1178 DTWKQS 1195
DTWKQS
Sbjct: 120 DTWKQS 125
Score = 89.0 bits (219), Expect(2) = 1e-51
Identities = 40/56 (71%), Positives = 43/56 (76%)
Frame = +1
Query: 823 IPMGIPMRKPXXXXXXXXXXXSCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 990
+PMG+PM K SCC+AAYRPSETLCGGELVDTLQFVCGDRGFYFSR
Sbjct: 1 MPMGVPMGKSILVLLTFLALASCCFAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 56
>ref|XP_866946.1| PREDICTED: similar to Insulin-like growth factor IB precursor
(IGF-IB) (Somatomedin C) (Mechano growth factor) (MGF)
isoform 4 [Canis familiaris].
Length = 159
Score = 51.2 bits (121), Expect(2) = 1e-14
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCGDRGFYF++
Sbjct: 51 ETLCGAELVDALQFVCGDRGFYFNK 75
Score = 47.8 bits (112), Expect(2) = 1e-14
Identities = 23/32 (71%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA PAKS R V
Sbjct: 90 GIVDECCFRSCDLRRLEMYCAPLKPAKSARSV 121
>ref|XP_853117.1| PREDICTED: similar to insulin-like growth factor 1 (somatomedin C)
isoform 2 [Canis familiaris].
Length = 153
Score = 51.2 bits (121), Expect(2) = 1e-14
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCGDRGFYF++
Sbjct: 51 ETLCGAELVDALQFVCGDRGFYFNK 75
Score = 47.8 bits (112), Expect(2) = 1e-14
Identities = 23/32 (71%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA PAKS R V
Sbjct: 90 GIVDECCFRSCDLRRLEMYCAPLKPAKSARSV 121
>ref|XP_866935.1| PREDICTED: similar to insulin-like growth factor 1 (somatomedin C)
isoform 3 [Canis familiaris].
Length = 137
Score = 51.2 bits (121), Expect(2) = 1e-14
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCGDRGFYF++
Sbjct: 35 ETLCGAELVDALQFVCGDRGFYFNK 59
Score = 47.8 bits (112), Expect(2) = 1e-14
Identities = 23/32 (71%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA PAKS R V
Sbjct: 74 GIVDECCFRSCDLRRLEMYCAPLKPAKSARSV 105
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,237,754
Number of extensions: 1718657
Number of successful extensions: 10710
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 10607
Number of HSP's successfully gapped: 14
Length of query: 423
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 318
Effective length of database: 15,374,224
Effective search space: 4889003232
Effective search space used: 4889003232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000805
(1270 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001121070.1| insulin-like growth factor II isoform 2 [Hom... 139 9e-53
Alignment gi|NP_000603.1| insulin-like growth factor II isoform 1 preprop... 139 6e-52
Alignment gi|NP_001007140.2| insulin-like growth factor II isoform 1 prep... 139 6e-52
Alignment gi|NP_001035835.1| insulin- insulin-like growth factor 2 read-t... 135 6e-32
Alignment gi|NP_001104755.1| insulin-like growth factor 1 isoform 3 prepr... 51 1e-14
Alignment gi|NP_001104753.1| insulin-like growth factor 1 isoform 1 prepr... 51 1e-14
Alignment gi|NP_000609.1| insulin-like growth factor 1 isoform 4 prepropr... 51 1e-14
Alignment gi|NP_001104754.1| insulin-like growth factor 1 isoform 2 prepr... 51 1e-14
>ref|NP_001121070.1| insulin-like growth factor II isoform 2 [Homo sapiens].
Length = 236
Score = 139 bits (350), Expect(2) = 9e-53
Identities = 63/65 (96%), Positives = 65/65 (100%)
Frame = +2
Query: 1001 RVNRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRYD 1180
RV+RRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFF+YD
Sbjct: 114 RVSRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFQYD 173
Query: 1181 TWKQS 1195
TWKQS
Sbjct: 174 TWKQS 178
Score = 87.4 bits (215), Expect(2) = 9e-53
Identities = 41/55 (74%), Positives = 41/55 (74%)
Frame = +1
Query: 826 PMGIPMRKPXXXXXXXXXXXSCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 990
PMGIPM K SCC AAYRPSETLCGGELVDTLQFVCGDRGFYFSR
Sbjct: 56 PMGIPMGKSMLVLLTFLAFASCCIAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 110
>ref|NP_000603.1| insulin-like growth factor II isoform 1 preproprotein [Homo sapiens].
Length = 180
Score = 139 bits (350), Expect(2) = 6e-52
Identities = 63/65 (96%), Positives = 65/65 (100%)
Frame = +2
Query: 1001 RVNRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRYD 1180
RV+RRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFF+YD
Sbjct: 58 RVSRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFQYD 117
Query: 1181 TWKQS 1195
TWKQS
Sbjct: 118 TWKQS 122
Score = 84.7 bits (208), Expect(2) = 6e-52
Identities = 40/54 (74%), Positives = 40/54 (74%)
Frame = +1
Query: 829 MGIPMRKPXXXXXXXXXXXSCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 990
MGIPM K SCC AAYRPSETLCGGELVDTLQFVCGDRGFYFSR
Sbjct: 1 MGIPMGKSMLVLLTFLAFASCCIAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 54
>ref|NP_001007140.2| insulin-like growth factor II isoform 1 preproprotein [Homo sapiens].
Length = 180
Score = 139 bits (350), Expect(2) = 6e-52
Identities = 63/65 (96%), Positives = 65/65 (100%)
Frame = +2
Query: 1001 RVNRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRYD 1180
RV+RRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFF+YD
Sbjct: 58 RVSRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFQYD 117
Query: 1181 TWKQS 1195
TWKQS
Sbjct: 118 TWKQS 122
Score = 84.7 bits (208), Expect(2) = 6e-52
Identities = 40/54 (74%), Positives = 40/54 (74%)
Frame = +1
Query: 829 MGIPMRKPXXXXXXXXXXXSCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 990
MGIPM K SCC AAYRPSETLCGGELVDTLQFVCGDRGFYFSR
Sbjct: 1 MGIPMGKSMLVLLTFLAFASCCIAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 54
>ref|NP_001035835.1| insulin- insulin-like growth factor 2 read-through product [Homo
sapiens].
Length = 200
Score = 135 bits (341), Expect = 6e-32
Identities = 74/127 (58%), Positives = 80/127 (62%)
Frame = +1
Query: 412 EGLATTARAPPTLVATATIGPTSGSPARQFRQRVWGTSDSPVLFIHHPGASGTTQRLEGR 591
EGL TARAPP LV TA IG GS +RQFRQR GTSDSPVLFIH PGA+GT Q LE R
Sbjct: 77 EGLDATARAPPALVVTANIGQAGGSSSRQFRQRALGTSDSPVLFIHCPGAAGTAQGLEYR 136
Query: 592 GRRVTPELEDEQPDSSPQPQGPTSXXXXXXXXXXXXXXXXXXXXXXDPSPQVSCCSLWPR 771
GRRVT EL E+ DSSPQPQG S +PSP+VSCC LWPR
Sbjct: 137 GRRVTTELVWEEVDSSPQPQGSES---LPAQPPAQPAPQPEPQQAREPSPEVSCCGLWPR 193
Query: 772 RSPPAQN 792
R +QN
Sbjct: 194 RPQRSQN 200
>ref|NP_001104755.1| insulin-like growth factor 1 isoform 3 preproprotein [Homo
sapiens].
Length = 195
Score = 51.2 bits (121), Expect(2) = 1e-14
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCGDRGFYF++
Sbjct: 51 ETLCGAELVDALQFVCGDRGFYFNK 75
Score = 47.8 bits (112), Expect(2) = 1e-14
Identities = 23/32 (71%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA PAKS R V
Sbjct: 90 GIVDECCFRSCDLRRLEMYCAPLKPAKSARSV 121
>ref|NP_001104753.1| insulin-like growth factor 1 isoform 1 preproprotein [Homo
sapiens].
Length = 158
Score = 51.2 bits (121), Expect(2) = 1e-14
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCGDRGFYF++
Sbjct: 51 ETLCGAELVDALQFVCGDRGFYFNK 75
Score = 47.8 bits (112), Expect(2) = 1e-14
Identities = 23/32 (71%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA PAKS R V
Sbjct: 90 GIVDECCFRSCDLRRLEMYCAPLKPAKSARSV 121
>ref|NP_000609.1| insulin-like growth factor 1 isoform 4 preproprotein [Homo
sapiens].
Length = 153
Score = 51.2 bits (121), Expect(2) = 1e-14
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCGDRGFYF++
Sbjct: 51 ETLCGAELVDALQFVCGDRGFYFNK 75
Score = 47.8 bits (112), Expect(2) = 1e-14
Identities = 23/32 (71%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA PAKS R V
Sbjct: 90 GIVDECCFRSCDLRRLEMYCAPLKPAKSARSV 121
>ref|NP_001104754.1| insulin-like growth factor 1 isoform 2 preproprotein [Homo
sapiens].
Length = 137
Score = 51.2 bits (121), Expect(2) = 1e-14
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCGDRGFYF++
Sbjct: 35 ETLCGAELVDALQFVCGDRGFYFNK 59
Score = 47.8 bits (112), Expect(2) = 1e-14
Identities = 23/32 (71%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA PAKS R V
Sbjct: 74 GIVDECCFRSCDLRRLEMYCAPLKPAKSARSV 105
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,660,196
Number of extensions: 1646221
Number of successful extensions: 9667
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9602
Number of HSP's successfully gapped: 15
Length of query: 423
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 318
Effective length of database: 14,835,944
Effective search space: 4717830192
Effective search space used: 4717830192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000805
(1270 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034644.2| insulin-like growth factor II isoform 1 preprop... 128 8e-47
Alignment gi|NP_001116209.1| insulin-like growth factor II isoform 2 prep... 128 1e-45
Alignment gi|NP_001116208.1| insulin-like growth factor II isoform 2 prep... 128 1e-45
Alignment gi|NP_908941.1| insulin-like growth factor I isoform 2 prepropr... 49 5e-13
Alignment gi|NP_034642.2| insulin-like growth factor I isoform 1 prepropr... 49 5e-13
Alignment gi|NP_001104745.1| insulin-like growth factor I isoform 4 prepr... 49 5e-13
Alignment gi|NP_001104744.1| insulin-like growth factor I isoform 3 prepr... 49 5e-13
Alignment gi|NP_001104746.1| insulin-like growth factor I isoform 5 prepr... 49 5e-13
Alignment gi|NP_032412.3| insulin-1 preproprotein [Mus musculus]. 35 5e-06
>ref|NP_034644.2| insulin-like growth factor II isoform 1 preproprotein [Mus musculus].
Length = 191
Score = 128 bits (322), Expect(2) = 8e-47
Identities = 58/65 (89%), Positives = 61/65 (93%)
Frame = +2
Query: 1001 RVNRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRYD 1180
R NRRSRGIVEECCFRSCDLALLETYCATPAKSERDVST VLPD+FPRYPVGKFF+YD
Sbjct: 69 RANRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTSQAVLPDDFPRYPVGKFFQYD 128
Query: 1181 TWKQS 1195
TW+QS
Sbjct: 129 TWRQS 133
Score = 78.2 bits (191), Expect(2) = 8e-47
Identities = 36/56 (64%), Positives = 38/56 (67%)
Frame = +1
Query: 823 IPMGIPMRKPXXXXXXXXXXXSCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 990
+PMGIP+ K CC AAY P ETLCGGELVDTLQFVC DRGFYFSR
Sbjct: 10 VPMGIPVGKSMLVLLISLAFALCCIAAYGPGETLCGGELVDTLQFVCSDRGFYFSR 65
>ref|NP_001116209.1| insulin-like growth factor II isoform 2 preproprotein [Mus musculus].
Length = 180
Score = 128 bits (322), Expect(2) = 1e-45
Identities = 58/65 (89%), Positives = 61/65 (93%)
Frame = +2
Query: 1001 RVNRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRYD 1180
R NRRSRGIVEECCFRSCDLALLETYCATPAKSERDVST VLPD+FPRYPVGKFF+YD
Sbjct: 58 RANRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTSQAVLPDDFPRYPVGKFFQYD 117
Query: 1181 TWKQS 1195
TW+QS
Sbjct: 118 TWRQS 122
Score = 74.3 bits (181), Expect(2) = 1e-45
Identities = 35/54 (64%), Positives = 36/54 (66%)
Frame = +1
Query: 829 MGIPMRKPXXXXXXXXXXXSCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 990
MGIP+ K CC AAY P ETLCGGELVDTLQFVC DRGFYFSR
Sbjct: 1 MGIPVGKSMLVLLISLAFALCCIAAYGPGETLCGGELVDTLQFVCSDRGFYFSR 54
>ref|NP_001116208.1| insulin-like growth factor II isoform 2 preproprotein [Mus musculus].
Length = 180
Score = 128 bits (322), Expect(2) = 1e-45
Identities = 58/65 (89%), Positives = 61/65 (93%)
Frame = +2
Query: 1001 RVNRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRYD 1180
R NRRSRGIVEECCFRSCDLALLETYCATPAKSERDVST VLPD+FPRYPVGKFF+YD
Sbjct: 58 RANRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTSQAVLPDDFPRYPVGKFFQYD 117
Query: 1181 TWKQS 1195
TW+QS
Sbjct: 118 TWRQS 122
Score = 74.3 bits (181), Expect(2) = 1e-45
Identities = 35/54 (64%), Positives = 36/54 (66%)
Frame = +1
Query: 829 MGIPMRKPXXXXXXXXXXXSCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 990
MGIP+ K CC AAY P ETLCGGELVDTLQFVC DRGFYFSR
Sbjct: 1 MGIPVGKSMLVLLISLAFALCCIAAYGPGETLCGGELVDTLQFVCSDRGFYFSR 54
>ref|NP_908941.1| insulin-like growth factor I isoform 2 preproprotein [Mus
musculus].
Length = 165
Score = 48.5 bits (114), Expect(2) = 5e-13
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCG RGFYF++
Sbjct: 35 ETLCGAELVDALQFVCGPRGFYFNK 59
Score = 44.7 bits (104), Expect(2) = 5e-13
Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA P K+ R +
Sbjct: 74 GIVDECCFRSCDLRRLEMYCAPLKPTKAARSI 105
>ref|NP_034642.2| insulin-like growth factor I isoform 1 preproprotein [Mus
musculus].
Length = 159
Score = 48.5 bits (114), Expect(2) = 5e-13
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCG RGFYF++
Sbjct: 51 ETLCGAELVDALQFVCGPRGFYFNK 75
Score = 44.7 bits (104), Expect(2) = 5e-13
Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA P K+ R +
Sbjct: 90 GIVDECCFRSCDLRRLEMYCAPLKPTKAARSI 121
>ref|NP_001104745.1| insulin-like growth factor I isoform 4 preproprotein [Mus
musculus].
Length = 153
Score = 48.5 bits (114), Expect(2) = 5e-13
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCG RGFYF++
Sbjct: 51 ETLCGAELVDALQFVCGPRGFYFNK 75
Score = 44.7 bits (104), Expect(2) = 5e-13
Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA P K+ R +
Sbjct: 90 GIVDECCFRSCDLRRLEMYCAPLKPTKAARSI 121
>ref|NP_001104744.1| insulin-like growth factor I isoform 3 preproprotein [Mus
musculus].
Length = 143
Score = 48.5 bits (114), Expect(2) = 5e-13
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCG RGFYF++
Sbjct: 35 ETLCGAELVDALQFVCGPRGFYFNK 59
Score = 44.7 bits (104), Expect(2) = 5e-13
Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA P K+ R +
Sbjct: 74 GIVDECCFRSCDLRRLEMYCAPLKPTKAARSI 105
>ref|NP_001104746.1| insulin-like growth factor I isoform 5 preproprotein [Mus
musculus].
Length = 137
Score = 48.5 bits (114), Expect(2) = 5e-13
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCG RGFYF++
Sbjct: 35 ETLCGAELVDALQFVCGPRGFYFNK 59
Score = 44.7 bits (104), Expect(2) = 5e-13
Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA P K+ R +
Sbjct: 74 GIVDECCFRSCDLRRLEMYCAPLKPTKAARSI 105
>ref|NP_032412.3| insulin-1 preproprotein [Mus musculus].
Length = 108
Score = 34.7 bits (78), Expect(2) = 5e-06
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 922 LCGGELVDTLQFVCGDRGFYFS-RAGKPREPPQ 1017
LCG LV+ L VCG+RGF+++ ++ + E PQ
Sbjct: 30 LCGPHLVEALYLVCGERGFFYTPKSRREVEDPQ 62
Score = 34.7 bits (78), Expect(2) = 5e-06
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 1004 VNRRSRGIVEECCFRSCDLALLETYC 1081
V R+ RGIV++CC C L LE YC
Sbjct: 82 VARQKRGIVDQCCTSICSLYQLENYC 107
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,728,632
Number of extensions: 1329138
Number of successful extensions: 7474
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 7395
Number of HSP's successfully gapped: 18
Length of query: 423
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 319
Effective length of database: 12,493,815
Effective search space: 3985526985
Effective search space used: 3985526985
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000805
(1270 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999048.1| insulin-like growth factor II preproprotein [Su... 142 7e-56
Alignment gi|NP_999421.1| insulin-like growth factor I precursor [Sus scr... 51 6e-15
Alignment gi|XP_003362197.1| PREDICTED: insulin-like growth factor II-lik... 60 3e-09
Alignment gi|XP_003355713.1| PREDICTED: insulin-like growth factor I-like... 53 3e-07
Alignment gi|NP_001103242.1| insulin precursor [Sus scrofa]. 37 2e-06
>ref|NP_999048.1| insulin-like growth factor II preproprotein [Sus scrofa].
Length = 181
Score = 142 bits (359), Expect(2) = 7e-56
Identities = 65/65 (100%), Positives = 65/65 (100%)
Frame = +2
Query: 1001 RVNRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRYD 1180
RVNRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRYD
Sbjct: 58 RVNRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFRYD 117
Query: 1181 TWKQS 1195
TWKQS
Sbjct: 118 TWKQS 122
Score = 93.6 bits (231), Expect(2) = 7e-56
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1
Query: 829 MGIPMRKPXXXXXXXXXXXSCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 990
MGIPMRKP SCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR
Sbjct: 1 MGIPMRKPLLVLLVFLALASCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 54
>ref|NP_999421.1| insulin-like growth factor I precursor [Sus scrofa].
Length = 130
Score = 51.2 bits (121), Expect(2) = 6e-15
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSR 990
ETLCG ELVD LQFVCGDRGFYF++
Sbjct: 28 ETLCGAELVDALQFVCGDRGFYFNK 52
Score = 47.8 bits (112), Expect(2) = 6e-15
Identities = 23/32 (71%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +2
Query: 1022 GIVEECCFRSCDLALLETYCA--TPAKSERDV 1111
GIV+ECCFRSCDL LE YCA PAKS R V
Sbjct: 67 GIVDECCFRSCDLRRLEMYCAPLKPAKSARSV 98
>ref|XP_003362197.1| PREDICTED: insulin-like growth factor II-like, partial [Sus
scrofa].
Length = 59
Score = 60.1 bits (144), Expect = 3e-09
Identities = 31/54 (57%), Positives = 31/54 (57%)
Frame = +1
Query: 829 MGIPMRKPXXXXXXXXXXXSCCYAAYRPSETLCGGELVDTLQFVCGDRGFYFSR 990
MGIPMRKP SCCYAAYRPSETL CGDRGFYFSR
Sbjct: 1 MGIPMRKPLLVLLVFLALASCCYAAYRPSETL----XXXXXXXXCGDRGFYFSR 50
>ref|XP_003355713.1| PREDICTED: insulin-like growth factor I-like [Sus scrofa].
Length = 114
Score = 53.1 bits (126), Expect = 3e-07
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +1
Query: 916 ETLCGGELVDTLQFVCGDRGFYFSRAGKPR 1005
ETLCG ELVD LQFVCGDRGFYFS P+
Sbjct: 35 ETLCGAELVDALQFVCGDRGFYFSDCQAPK 64
>ref|NP_001103242.1| insulin precursor [Sus scrofa].
Length = 108
Score = 37.4 bits (85), Expect(2) = 2e-06
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +1
Query: 913 SETLCGGELVDTLQFVCGDRGFYFS-RAGKPREPPQ 1017
++ LCG LV+ L VCG+RGF+++ +A + E PQ
Sbjct: 27 NQHLCGSHLVEALYLVCGERGFFYTPKARREAENPQ 62
Score = 33.1 bits (74), Expect(2) = 2e-06
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 1013 RSRGIVEECCFRSCDLALLETYC 1081
+ RGIVE+CC C L LE YC
Sbjct: 85 QKRGIVEQCCTSICSLYQLENYC 107
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,743,402
Number of extensions: 1091198
Number of successful extensions: 6566
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6540
Number of HSP's successfully gapped: 8
Length of query: 423
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 321
Effective length of database: 8,804,438
Effective search space: 2826224598
Effective search space used: 2826224598
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000805
(1270 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896399.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 389 e-105
gb|GL896425.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 214 9e-53
>gb|GL896399.1| Sus scrofa unplaced genomic scaffold chrU_scaffold743
Length = 16880
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 396 agcggcaacccggctggagggtctggccactacagccagagcgccccctactttggtggc 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998 agcggcaacccggctggagggtctggccactacagccagagcgccccctactttggtggc 9057
Query: 456 gactgctactattggcccaaccagcggatcaccggccaggcagtttcggcagagagtctg 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9058 gactgctactattggcccaaccagcggatcaccggccaggcagtttcggcagagagtctg 9117
Query: 516 gggcaccagtgactcccccgtcctctttatccaccacccaggagcttcagggactacaca 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9118 gggcaccagtgactcccccgtcctctttatccaccacccaggagcttcagggactacaca 9177
Query: 576 gcgactagagggcagg 591
||||||||||||||||
Sbjct: 9178 gcgactagagggcagg 9193
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 194 cacacagacacccctggggagaagtcacaggcccccagcaggccccgcccctggagagga 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 cacacagacacccctggggagaagtcacaggcccccagcaggccccgcccctggagagga 867
Query: 254 ggccagggctgggcaggcgggtggccggccggacactggacccggaaggggggtaggcgg 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ggccagggctgggcaggcgggtggccggccggacactggacccggaaggggggtaggcgg 927
Query: 314 ctgggatgagtggcgagctgtccatggg 341
||||||||||||||||||||||||||||
Sbjct: 928 ctgggatgagtggcgagctgtccatggg 955
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 68 agggactgcacacccgccagaggtgggcctgaggggtggcagcaggctctccgcctggga 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggactgcacacccgccagaggtgggcctgaggggtggcagcaggctctccgcctggga 680
Query: 128 cccagccagctgggcagctcacctctc 154
|||||||||||||||||||||||||||
Sbjct: 681 cccagccagctgggcagctcacctctc 707
>gb|GL896425.1| Sus scrofa unplaced genomic scaffold chrU_scaffold767
Length = 2923
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 822 gattccaatggggatcccgatgaggaagccgctgctcgtgctgctcgtcttcttggcctt 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2423 gattccaatggggatcccgatgaggaagccgctgctcgtgctgctcgtcttcttggcctt 2364
Query: 882 ggcctcgtgctgctatgctgcttaccgccccagtgagactctgtgcgg 929
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2363 ggcctcgtgctgctatgctgcttaccgccccagtgagactctgtgcgg 2316
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 990 ggccggcaagccgcgtgaaccgccgcagccgtggc 1024
|||||||||||||||||||||||||||||||||||
Sbjct: 35 ggccggcaagccgcgtgaaccgccgcagccgtggc 1
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,977,585
Number of extensions: 202
Number of successful extensions: 202
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 5
Length of query: 1270
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1249
Effective length of database: 2,808,413,156
Effective search space: 3507708031844
Effective search space used: 3507708031844
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)