Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000808
(1094 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029557.1| pro-cathepsin H precursor [Bos taurus]. 568 e-169
Alignment gi|NP_001077155.1| cathepsin L1 [Bos taurus]. 196 3e-53
Alignment gi|NP_001029607.1| cathepsin K [Bos taurus]. 195 6e-53
Alignment gi|NP_776457.1| cathepsin L2 precursor [Bos taurus]. 187 5e-51
Alignment gi|NP_001028787.1| cathepsin S precursor [Bos taurus]. 183 1e-46
Alignment gi|NP_001068884.1| cathepsin F [Bos taurus]. 157 2e-41
Alignment gi|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus]. 120 8e-32
Alignment gi|XP_874012.3| PREDICTED: cathepsin O [Bos taurus]. 110 7e-27
Alignment gi|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [B... 110 7e-27
Alignment gi|NP_001103540.1| cathepsin W [Bos taurus]. 91 2e-18
>ref|NP_001029557.1| pro-cathepsin H precursor [Bos taurus].
Length = 335
Score = 568 bits (1465), Expect(2) = e-169
Identities = 266/306 (86%), Positives = 282/306 (92%)
Frame = +2
Query: 98 MWAVLSLLCAGAWLLGPPACGASNLAVSSFEKLHFKSWMVQHQKKYSLEEYHHRLQVFVS 277
MWAVL LLCAGAWLLG PACGA+ LA +S EK HF+SWMVQHQKKYS EEY+HRLQ F S
Sbjct: 1 MWAVLPLLCAGAWLLGAPACGAAELAANSLEKFHFQSWMVQHQKKYSSEEYYHRLQAFAS 60
Query: 278 NWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTGPYPPSM 457
N R+INAHNA NHTFK+GLNQFSDMSFDE++ KYLWSEPQNCSATK NYLRGTGPYPPSM
Sbjct: 61 NLREINAHNARNHTFKMGLNQFSDMSFDELKRKYLWSEPQNCSATKSNYLRGTGPYPPSM 120
Query: 458 DWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHG 637
DWRKKGNFV+PVKNQGSCGSCWTFSTTGALESAVAIATGK+ LAEQQLVDCAQNFNNHG
Sbjct: 121 DWRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFNNHG 180
Query: 638 CQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMV 817
CQGGLPSQAFEYIRYNKGIMGEDTYPY+GQD CK+QP KAIAFVKDVANIT+NDEEAMV
Sbjct: 181 CQGGLPSQAFEYIRYNKGIMGEDTYPYRGQDGDCKYQPSKAIAFVKDVANITLNDEEAMV 240
Query: 818 EAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
EAVAL+NPVSFAFEVT DF+MYRKGIYSSTSCHKTPDKVNHAVLAVGYGEE GIPYWIVK
Sbjct: 241 EAVALHNPVSFAFEVTADFMMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEEKGIPYWIVK 300
Query: 998 THGVPS 1015
P+
Sbjct: 301 NSWGPN 306
Score = 47.0 bits (110), Expect(2) = e-169
Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 6/32 (18%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK------TCAAWP 1071
+NSWGP WGM GYFLIERGK CA++P
Sbjct: 300 KNSWGPNWGMKGYFLIERGKNMCGLAACASFP 331
>ref|NP_001077155.1| cathepsin L1 [Bos taurus].
Length = 333
Score = 196 bits (499), Expect(2) = 3e-53
Identities = 109/275 (39%), Positives = 153/275 (55%), Gaps = 9/275 (3%)
Frame = +2
Query: 200 FKSWMVQHQKKYSLEEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSFDEI 367
+K W H+K Y L E R V+ N + I HN G H+F + +N F DM+ +E
Sbjct: 29 WKLWKAAHRKPYDLNEEGWRKAVWKKNMKMIELHNQEYSQGKHSFSMAMNAFGDMTNEEF 88
Query: 368 RHKYLWSEPQNCSATKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGAL 547
RH + Q K + PPS+DWR+KG +V+PVKNQG CGSCW FS TGAL
Sbjct: 89 RHTMNGFQRQKNKKGKEFHETIFASIPPSVDWREKG-YVTPVKNQGKCGSCWAFSATGAL 147
Query: 548 ESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQ 727
E + TGK++SL+EQ LVDC+Q N GC GG AF+Y+ G+ E++YPY G
Sbjct: 148 EGQMFQKTGKLVSLSEQNLVDCSQPEGNRGCHGGFIDNAFQYVLDVGGLDSEESYPYTGL 207
Query: 728 DDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTN-DFLMYRKGIYSS 904
C + P+ + A ++ E+A+++AVA P+S A + N F Y+ GIY
Sbjct: 208 VGTCLYNPNNSAANETGFVDLP-KQEKALMKAVANLGPISVAVDAHNPSFQFYKSGIYYE 266
Query: 905 TSCHKTPDKVNHAVLAVGYG----EENGIPYWIVK 997
+C + + V+HAVL VGYG + + YW+VK
Sbjct: 267 PNC--SSESVDHAVLVVGYGFEGADSDDNKYWLVK 299
Score = 31.2 bits (69), Expect(2) = 3e-53
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK 1053
+NSWG WGMNGY + + +
Sbjct: 299 KNSWGEHWGMNGYIKMAKDR 318
>ref|NP_001029607.1| cathepsin K [Bos taurus].
Length = 334
Score = 195 bits (496), Expect(2) = 6e-53
Identities = 109/273 (39%), Positives = 158/273 (57%), Gaps = 10/273 (3%)
Frame = +2
Query: 209 WMVQHQKKYSL--EEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSFDEIR 370
W ++K+Y+ +E RL ++ N + I+ HN G HT++L +N DM+ +E+
Sbjct: 34 WKKTYRKQYNSKGDEISRRL-IWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVV 92
Query: 371 HKYLWSEPQNCSATKGNYLR---GTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTG 541
K + + + L G P S+D+RKKG +V+PVKNQG CGSCW FS+ G
Sbjct: 93 QKMTGLKVPASRSRSNDTLYIPDWEGRAPDSVDYRKKG-YVTPVKNQGQCGSCWAFSSVG 151
Query: 542 ALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK 721
ALE + TGK+L+L+ Q LVDC N GC GG + AF+Y++ N+GI ED YPY
Sbjct: 152 ALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV 209
Query: 722 GQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVT-NDFLMYRKGIY 898
GQD++C + P A + I +E+A+ AVA P+S A + + F YRKG+Y
Sbjct: 210 GQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPISVAIDASLTSFQFYRKGVY 269
Query: 899 SSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
+C+ D +NHAVLAVGYG + G +WI+K
Sbjct: 270 YDENCNS--DNLNHAVLAVGYGIQKGNKHWIIK 300
Score = 31.6 bits (70), Expect(2) = 6e-53
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGKTCA 1062
+NSWG WG GY L+ R K A
Sbjct: 300 KNSWGENWGNKGYILMARNKNNA 322
>ref|NP_776457.1| cathepsin L2 precursor [Bos taurus].
Length = 334
Score = 187 bits (475), Expect(3) = 5e-51
Identities = 109/284 (38%), Positives = 156/284 (54%), Gaps = 12/284 (4%)
Frame = +2
Query: 197 HFKSWMVQHQKKYSLEEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSFDE 364
H+ W H++ Y + E R V+ N + I+ HN G H F++ +N F DM+ +E
Sbjct: 28 HWHQWKATHRRLYGMNEEEWRRAVWEKNKKIIDLHNQEYSEGKHAFRMAMNAFGDMTNEE 87
Query: 365 IRHKYLWSEPQNCSATKGNYLRGT--GPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTT 538
R + + QN KG P S+DW KKG +V+PVKNQG CGSCW FS T
Sbjct: 88 FRQ--VMNGFQNQKHKKGKLFHEPLLVDVPKSVDWTKKG-YVTPVKNQGQCGSCWAFSAT 144
Query: 539 GALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPY 718
GALE + TGK++SL+EQ LVDC++ N GC GGL AF+YI+ N G+ E++YPY
Sbjct: 145 GALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNGGLMDNAFQYIKDNGGLDSEESYPY 204
Query: 719 KGQD-DHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTN-DFLMYRKG 892
D + C ++P+ + A +I E+A+++AVA P+S A + + F Y+ G
Sbjct: 205 LATDTNSCNYKPECSAANDTGFVDIPQR-EKALMKAVATVGPISVAIDAGHTSFQFYKSG 263
Query: 893 IYSSTSCHKTPDKVNHAVLAVGYG----EENGIPYWIVKTHGVP 1012
IY C + ++H VL VGYG + N +WIVK P
Sbjct: 264 IYYDPDC--SCKDLDHGVLVVGYGFEGTDSNNNKFWIVKNSWGP 305
Score = 32.3 bits (72), Expect(3) = 5e-51
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 994 ENSWGPQWGMNGY 1032
+NSWGP+WG NGY
Sbjct: 300 KNSWGPEWGWNGY 312
Score = 21.6 bits (44), Expect(3) = 5e-51
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 1020 NEWVLPHRAWKDMCGLAACASYP 1088
N +V + + CG+A ASYP
Sbjct: 310 NGYVKMAKDQNNHCGIATAASYP 332
>ref|NP_001028787.1| cathepsin S precursor [Bos taurus].
Length = 331
Score = 183 bits (464), Expect(2) = 1e-46
Identities = 109/278 (39%), Positives = 151/278 (54%), Gaps = 11/278 (3%)
Frame = +2
Query: 197 HFKSWMVQHQKKYSL--EEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSF 358
H+ W + K+Y EE RL ++ N + + HN G H+++LG+N DM+
Sbjct: 27 HWDLWKKTYGKQYKEKNEEVARRL-IWEKNLKTVTLHNLEHSMGMHSYELGMNHLGDMTS 85
Query: 359 DEIRHKYLWSEPQNCSATKGNYLRGTGP---YPPSMDWRKKGNFVSPVKNQGSCGSCWTF 529
+E+ L S + S N + P P SMDWR+KG V+ VK QG+CGSCW F
Sbjct: 86 EEVIS--LMSSLRVPSQWPRNVTYKSDPNQKLPDSMDWREKG-CVTEVKYQGACGSCWAF 142
Query: 530 STTGALESAVAIATGKMLSLAEQQLVDCA-QNFNNHGCQGGLPSQAFEYIRYNKGIMGED 706
S GALE+ V + TGK++SL+ Q LVDC+ + N GC GG ++AF+YI N GI E
Sbjct: 143 SAVGALEAQVKLKTGKLVSLSAQNLVDCSTAKYGNKGCNGGFMTEAFQYIIDNNGIDSEA 202
Query: 707 TYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVT-NDFLMY 883
+YPYK D C++ A + EEA+ EAVA PVS + + + F +Y
Sbjct: 203 SYPYKAMDGKCQYDVKNRAATCSRYIELPFGSEEALKEAVANKGPVSVGIDASHSSFFLY 262
Query: 884 RKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
+ G+Y SC VNH VL VGYG +G YW+VK
Sbjct: 263 KTGVYYDPSC---TQNVNHGVLVVGYGNLDGKDYWLVK 297
Score = 22.7 bits (47), Expect(2) = 1e-46
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIER--GKTC--AAWPPAP 1080
+NSWG +G GY + R G C A +P P
Sbjct: 297 KNSWGLHFGDQGYIRMARNSGNHCGIANYPSYP 329
>ref|NP_001068884.1| cathepsin F [Bos taurus].
Length = 460
Score = 157 bits (396), Expect(2) = 2e-41
Identities = 103/274 (37%), Positives = 146/274 (53%), Gaps = 8/274 (2%)
Frame = +2
Query: 200 FKSWMVQHQKKY-SLEEYHHRLQVFVSNW---RKINAHNAGNHTFKLGLNQFSDMSFDEI 367
FK ++ + + Y S EE R+ VF +N +KI A + G T + G+ +FSD++ +E
Sbjct: 163 FKDFVTTYNRTYDSQEEASWRMSVFANNMVRAQKIQALDRG--TARYGVTKFSDLTEEEF 220
Query: 368 RHKYLWSEPQNCSATKGNYLRGTGPY----PPSMDWRKKGNFVSPVKNQGSCGSCWTFST 535
R YL P A G +R P PP DWR KG V+ VK+QG CGSCW FS
Sbjct: 221 RTIYL--NPLLKDAP-GRNMRPAQPVTDVPPPQWDWRNKGA-VTNVKDQGMCGSCWAFSV 276
Query: 536 TGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYP 715
TG +E + G +LSL+EQ+L+DC + + C GGLPS A+ IR G+ ED Y
Sbjct: 277 TGNVEGQWFLKRGTLLSLSEQELLDCDK--TDKACLGGLPSNAYSAIRTLGGLETEDDYS 334
Query: 716 YKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGI 895
Y+G+ C F +KA ++ D ++ N E+ + +A PVS A YR GI
Sbjct: 335 YRGRLQTCSFSAEKAKVYINDSVELSKN-EQKLAAWLAKNGPVSIAINAFG-MQFYRHGI 392
Query: 896 YSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
+P ++HAVL VGYG + IP+W +K
Sbjct: 393 SHPLRPLCSPWLIDHAVLLVGYGNRSAIPFWAIK 426
Score = 31.6 bits (70), Expect(2) = 2e-41
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERG 1050
+NSWG WG GY+ + RG
Sbjct: 426 KNSWGTDWGEEGYYYLHRG 444
>ref|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus].
Length = 463
Score = 120 bits (302), Expect(2) = 8e-32
Identities = 73/197 (37%), Positives = 109/197 (55%), Gaps = 13/197 (6%)
Frame = +2
Query: 446 PPSMDWRKKG--NFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLS--LAEQQLVDC 613
P S DWR NFV+PV+NQGSCGSC++F++ G +E+ + I T + L+ Q++V C
Sbjct: 232 PTSWDWRNVHGINFVTPVRNQGSCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSC 291
Query: 614 AQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKD---VA 784
+Q GC+GG P + G++ ED +PY G D C+ + + + V
Sbjct: 292 SQ--YAQGCEGGFPYLIAGKYAQDFGLVEEDCFPYTGTDSPCRLKEGCFRYYSSEYHYVG 349
Query: 785 NITMNDEEAMVEAVALY-NPVSFAFEVTNDFLMYRKGIYSSTSCH---KTPDKVNHAVLA 952
EA+++ ++ P++ AFEV +DFL YRKG+Y T + NHAVL
Sbjct: 350 GFYGGCNEALMKLELVHQGPMAVAFEVYDDFLHYRKGVYHHTGLRDPFNPFELTNHAVLL 409
Query: 953 VGYGEE--NGIPYWIVK 997
VGYG + +G+ YWIVK
Sbjct: 410 VGYGTDAASGLDYWIVK 426
Score = 35.4 bits (80), Expect(2) = 8e-32
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERG 1050
+NSWG WG NGYF I RG
Sbjct: 426 KNSWGTSWGENGYFRIRRG 444
>ref|XP_874012.3| PREDICTED: cathepsin O [Bos taurus].
Length = 384
Score = 110 bits (275), Expect(2) = 7e-27
Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 5/234 (2%)
Frame = +2
Query: 311 NHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTG--PYPPSMDWRKKGNFV 484
N T G+NQFS + +E + YL S P P DWR K + V
Sbjct: 125 NSTAVYGINQFSYLFPEEFKAIYLRSSPSRFPRFPAEEYTSISNLSLPLRFDWRDK-HVV 183
Query: 485 SPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQA 664
+ V+NQ +CG CW FS GA+ES AI + L+ QQ++DC +++N+GC GG P A
Sbjct: 184 TQVRNQKTCGGCWAFSVVGAVESVCAIKGQPLEVLSVQQVIDC--SYSNYGCNGGSPLSA 241
Query: 665 FEYI-RYNKGIMGEDTYPYKGQDDHCKFQPDK-AIAFVKDVANITMN-DEEAMVEAVALY 835
++ + ++ + YP++ Q+ C++ D + + +K + + E+ M EA+
Sbjct: 242 LYWLNKLQVKLVRDSEYPFQAQNGLCRYFSDSHSGSSIKGYSAYDFSGQEDKMAEALLAL 301
Query: 836 NPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
P+ V D + ++ + H + + NHAVL G+ + IPYWIV+
Sbjct: 302 GPLI----VVVDAMSWQDYLGGIIQHHCSSGEANHAVLVTGFDKTGSIPYWIVR 351
Score = 29.3 bits (64), Expect(2) = 7e-27
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 997 NSWGPQWGMNGYFLIERG 1050
NSWG WG++GY ++ G
Sbjct: 352 NSWGTSWGIDGYVRVKMG 369
>ref|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [Bos taurus].
Length = 375
Score = 110 bits (275), Expect(2) = 7e-27
Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 5/234 (2%)
Frame = +2
Query: 311 NHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTG--PYPPSMDWRKKGNFV 484
N T G+NQFS + +E + YL S P P DWR K + V
Sbjct: 116 NSTAVYGINQFSYLFPEEFKAIYLRSSPSRFPRFPAEEYTSISNLSLPLRFDWRDK-HVV 174
Query: 485 SPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQA 664
+ V+NQ +CG CW FS GA+ES AI + L+ QQ++DC +++N+GC GG P A
Sbjct: 175 TQVRNQKTCGGCWAFSVVGAVESVCAIKGQPLEVLSVQQVIDC--SYSNYGCNGGSPLSA 232
Query: 665 FEYI-RYNKGIMGEDTYPYKGQDDHCKFQPDK-AIAFVKDVANITMN-DEEAMVEAVALY 835
++ + ++ + YP++ Q+ C++ D + + +K + + E+ M EA+
Sbjct: 233 LYWLNKLQVKLVRDSEYPFQAQNGLCRYFSDSHSGSSIKGYSAYDFSGQEDKMAEALLAL 292
Query: 836 NPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
P+ V D + ++ + H + + NHAVL G+ + IPYWIV+
Sbjct: 293 GPLI----VVVDAMSWQDYLGGIIQHHCSSGEANHAVLVTGFDKTGSIPYWIVR 342
Score = 29.3 bits (64), Expect(2) = 7e-27
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 997 NSWGPQWGMNGYFLIERG 1050
NSWG WG++GY ++ G
Sbjct: 343 NSWGTSWGIDGYVRVKMG 360
>ref|NP_001103540.1| cathepsin W [Bos taurus].
Length = 272
Score = 90.9 bits (224), Expect = 2e-18
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 9/202 (4%)
Frame = +2
Query: 200 FKSWMVQHQKKY-SLEEYHHRLQVFVSNWRK---INAHNAGNHTFKLGLNQFSDMSFDEI 367
F+ + +Q+ + Y + EY RL +F N K + + G T + G+ QFSD++ +E
Sbjct: 42 FRLFQMQYNRSYPNPAEYARRLDIFAQNLAKAQRLQEEDLG--TAEFGVTQFSDLTEEEF 99
Query: 368 RHKY---LWSEPQNCSATKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTT 538
Y + E S G+ G P + DWRK G +SPV++Q +C CW +
Sbjct: 100 VQLYGSQVAGEALGVSRKVGSEEWGESE-PQTCDWRKVGT-ISPVRDQRNCNCCWAMAAA 157
Query: 539 GALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPY 718
G +E+ AI + ++ QQL+DC + N GC+GG AF + N G+ E YP+
Sbjct: 158 GNIEALWAIKFRHFVEVSVQQLLDCDRCGN--GCRGGFVWDAFLTVLNNSGLASEKDYPF 215
Query: 719 --KGQDDHCKFQPDKAIAFVKD 778
G+ C + K +A+++D
Sbjct: 216 NGSGKTHRCLAKKYKKVAWIQD 237
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,467,014
Number of extensions: 1448860
Number of successful extensions: 5960
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 5902
Number of HSP's successfully gapped: 29
Length of query: 364
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,240,222
Effective search space: 3702457720
Effective search space used: 3702457720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000808
(1094 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Ca... 495 e-148
Alignment gi|NP_001029168.1| cathepsin K precursor [Canis lupus familiari... 193 2e-52
Alignment gi|XP_541257.2| PREDICTED: similar to Cathepsin L precursor (Ma... 186 2e-50
Alignment gi|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiar... 185 2e-50
Alignment gi|NP_001002938.1| cathepsin S precursor [Canis lupus familiari... 185 1e-47
Alignment gi|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CA... 151 8e-40
Alignment gi|XP_540846.2| PREDICTED: similar to cathepsin W preproprotein... 118 1e-30
Alignment gi|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiar... 116 4e-30
Alignment gi|XP_535784.2| PREDICTED: similar to Dipeptidyl-peptidase I pr... 112 2e-28
Alignment gi|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Ca... 112 2e-27
>ref|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Canis familiaris].
Length = 304
Score = 495 bits (1274), Expect(2) = e-148
Identities = 232/265 (87%), Positives = 246/265 (92%), Gaps = 1/265 (0%)
Frame = +2
Query: 221 HQKKYSLEEYHHRLQVFVSNWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQN 400
HQKKYS EEY RLQ FV NWRKINAHNAGNHTFK+GLNQFSDM+F EI+HKYLWSEPQN
Sbjct: 10 HQKKYSSEEYLQRLQTFVGNWRKINAHNAGNHTFKMGLNQFSDMNFAEIKHKYLWSEPQN 69
Query: 401 CSATKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKM 580
CSATKGNYLRGTGPYPP +DWRKKG FVSPVKNQGSCGSCWTFSTTGALESA+AI +GK+
Sbjct: 70 CSATKGNYLRGTGPYPPFVDWRKKGKFVSPVKNQGSCGSCWTFSTTGALESAIAIKSGKL 129
Query: 581 LSLAEQQLVDCAQNFNNHGCQG-GLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDK 757
LSLAEQQLVDCAQNFNNHGCQG G P QAFEYIRYNKGIMGED+YPYKGQD CK+QP K
Sbjct: 130 LSLAEQQLVDCAQNFNNHGCQGYGAPLQAFEYIRYNKGIMGEDSYPYKGQDGDCKYQPSK 189
Query: 758 AIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVN 937
AIAFVKDVANIT+NDE+AMVEAVALYNPVSFAFEVT+DF+MYRKGIYSSTSCHKTPDKVN
Sbjct: 190 AIAFVKDVANITINDEQAMVEAVALYNPVSFAFEVTSDFMMYRKGIYSSTSCHKTPDKVN 249
Query: 938 HAVLAVGYGEENGIPYWIVKTHGVP 1012
HAVLAVGYGE+NGIPYWIVK P
Sbjct: 250 HAVLAVGYGEQNGIPYWIVKNSWGP 274
Score = 50.4 bits (119), Expect(2) = e-148
Identities = 21/32 (65%), Positives = 25/32 (78%), Gaps = 6/32 (18%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK------TCAAWP 1071
+NSWGPQWGMNGYFL+ERGK CA++P
Sbjct: 269 KNSWGPQWGMNGYFLMERGKNMCGLAACASYP 300
>ref|NP_001029168.1| cathepsin K precursor [Canis lupus familiaris].
Length = 330
Score = 193 bits (491), Expect(2) = 2e-52
Identities = 109/273 (39%), Positives = 158/273 (57%), Gaps = 10/273 (3%)
Frame = +2
Query: 209 WMVQHQKKYS--LEEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSFDEIR 370
W ++K+Y+ ++E RL ++ N + I+ HN G HT++L +N DM+ +E+
Sbjct: 30 WKKTYRKQYNSKVDELSRRL-IWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVV 88
Query: 371 HKY--LWSEPQNCSATKGNYLRG-TGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTG 541
K L P + + Y+ P S+D+RKKG +V+PVKNQG CGSCW FS+ G
Sbjct: 89 QKMTGLKVPPSHSRSNDTLYIPDWESRAPDSVDYRKKG-YVTPVKNQGQCGSCWAFSSVG 147
Query: 542 ALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK 721
ALE + TGK+L+L+ Q LVDC N GC GG + AF+Y++ N+GI ED YPY
Sbjct: 148 ALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV 205
Query: 722 GQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVT-NDFLMYRKGIY 898
GQD+ C + P A + I +E+A+ AVA P+S A + + F Y KG+Y
Sbjct: 206 GQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPISVAIDASLTSFQFYSKGVY 265
Query: 899 SSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
+C+ D +NHAVLAVGYG + G +WI+K
Sbjct: 266 YDENCNS--DNLNHAVLAVGYGIQKGNKHWIIK 296
Score = 31.6 bits (70), Expect(2) = 2e-52
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGKTCA 1062
+NSWG WG GY L+ R K A
Sbjct: 296 KNSWGENWGNKGYILMARNKNNA 318
>ref|XP_541257.2| PREDICTED: similar to Cathepsin L precursor (Major excreted
protein) (MEP) [Canis familiaris].
Length = 333
Score = 186 bits (473), Expect(3) = 2e-50
Identities = 108/278 (38%), Positives = 155/278 (55%), Gaps = 11/278 (3%)
Frame = +2
Query: 197 HFKSWMVQHQKKYSLEEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSFDE 364
H+ W H K Y +E R V+ N I HN G H+F L +N F DM+ +E
Sbjct: 28 HWSQWKEAHGKLYDKDEEGWRRTVWERNMEMIEQHNQEYSQGEHSFTLAMNAFGDMTNEE 87
Query: 365 IRHKYLWSEPQNCSATKGNYLRGT--GPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTT 538
K + ++ + KG P S+DWR++G +V+PVK+QG C CW FS T
Sbjct: 88 F--KQVLNDFKIQKHKKGKVFPAPLFAEVPSSVDWREQG-YVTPVKDQGQCLGCWAFSAT 144
Query: 539 GALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPY 718
GALE + TGK++SL+EQ LVDC+ + N GC GGL AF+Y++ N G+ E++YPY
Sbjct: 145 GALEGQMFRKTGKLVSLSEQNLVDCSWSQGNRGCNGGLMEYAFQYVKDNGGLDSEESYPY 204
Query: 719 KGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVT-NDFLMYRKGI 895
+++ CK++P+K+ A V I +N+E+ ++ VA PVS A + + F Y+KGI
Sbjct: 205 LARNEPCKYRPEKSAANVTAFWPI-LNEEDGLMTTVATVGPVSAAVDSSPQSFQFYKKGI 263
Query: 896 YSSTSCHKTPDKVNHAVLAVGYG----EENGIPYWIVK 997
Y C + +NH VL VGYG E + YWIVK
Sbjct: 264 YYDPKC--SNKLLNHGVLVVGYGFEGAESDNKKYWIVK 299
Score = 31.6 bits (70), Expect(3) = 2e-50
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK 1053
+NSWG WGM GY L+ + +
Sbjct: 299 KNSWGTNWGMQGYMLLAKDR 318
Score = 21.2 bits (43), Expect(3) = 2e-50
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 1059 CGLAACASYPI 1091
CG+A ASYP+
Sbjct: 322 CGIATRASYPV 332
>ref|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiaris].
Length = 333
Score = 185 bits (470), Expect(3) = 2e-50
Identities = 107/279 (38%), Positives = 155/279 (55%), Gaps = 11/279 (3%)
Frame = +2
Query: 209 WMVQHQKKYSLEEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSFDEIRHK 376
W H++ Y + E R V+ N + I HN G H F + +N F DM+ +E R
Sbjct: 32 WKATHRRLYGMNEEGWRRAVWEKNMKMIELHNREYSQGKHGFTMAMNAFGDMTNEEFRQ- 90
Query: 377 YLWSEPQNCSATKGNYLRGT--GPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALE 550
+ + QN KG + P S+DWR+KG +V+PVKNQG CGSCW FS TGALE
Sbjct: 91 -VMNGFQNQKHKKGKMFQEPLFAEIPKSVDWREKG-YVTPVKNQGQCGSCWAFSATGALE 148
Query: 551 SAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD 730
+ TGK++SL+EQ LVDC++ N GC GGL AF Y++ N G+ E++YPY G+D
Sbjct: 149 GQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNGGLMDNAFRYVKDNGGLDSEESYPYLGRD 208
Query: 731 -DHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTN-DFLMYRKGIYSS 904
+ C ++P+ + A ++ E+A+++AVA P+S A + + F Y+ GIY
Sbjct: 209 TETCNYKPECSAANDTGFVDLPQR-EKALMKAVATLGPISVAIDAGHQSFQFYKSGIYFD 267
Query: 905 TSCHKTPDKVNHAVLAVGYGEE---NGIPYWIVKTHGVP 1012
C + ++H VL VGYG E + +WIVK P
Sbjct: 268 PDC--SSKDLDHGVLVVGYGFEGTDSNNKFWIVKNSWGP 304
Score = 32.3 bits (72), Expect(3) = 2e-50
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 994 ENSWGPQWGMNGY 1032
+NSWGP+WG NGY
Sbjct: 299 KNSWGPEWGWNGY 311
Score = 21.6 bits (44), Expect(3) = 2e-50
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 1020 NEWVLPHRAWKDMCGLAACASYP 1088
N +V + + CG+A ASYP
Sbjct: 309 NGYVKMAKDQNNHCGIATAASYP 331
>ref|NP_001002938.1| cathepsin S precursor [Canis lupus familiaris].
Length = 331
Score = 185 bits (470), Expect(2) = 1e-47
Identities = 113/305 (37%), Positives = 157/305 (51%), Gaps = 17/305 (5%)
Frame = +2
Query: 134 WLLGP-PACGASNLAVSSFEKL--HFKSWMVQHQKKYSLE-EYHHRLQVFVSNWRKINAH 301
WL+G P C + V L H+ W + K+Y E E R ++ N + + H
Sbjct: 3 WLVGLLPLCSYAVAQVHKDPTLDHHWNLWKKTYSKQYKEENEEVARRLIWEKNLKFVMLH 62
Query: 302 NA----GNHTFKLGLNQFSDMSFDEI-------RHKYLWSEPQNCSATKGNYLRGTGPYP 448
N G H++ LG+N DM+ +E+ R W + L P
Sbjct: 63 NLEHSMGMHSYDLGMNHLGDMTGEEVISLMGSLRVPSQWQRNVTYRSNSNQKL------P 116
Query: 449 PSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCA-QNF 625
S+DWR+KG V+ VK QGSCG+CW FS GALE+ + + TGK++SL+ Q LVDC+ + +
Sbjct: 117 DSVDWREKG-CVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 175
Query: 626 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDE 805
N GC GG + AF+YI N GI E +YPYK + C++ K A + E
Sbjct: 176 GNKGCNGGFMTTAFQYIIDNNGIDSEASYPYKAMNGKCRYDSKKRAATCSKYTELPFGSE 235
Query: 806 EAMVEAVALYNPVSFAFEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIP 982
+A+ EAVA PVS A + ++ F +YR G+Y SC VNH VL VGYG NG
Sbjct: 236 DALKEAVANKGPVSVAIDASHYSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGNLNGKD 292
Query: 983 YWIVK 997
YW+VK
Sbjct: 293 YWLVK 297
Score = 23.9 bits (50), Expect(2) = 1e-47
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIER--GKTC--AAWPPAP 1080
+NSWG +G GY + R G C A++P P
Sbjct: 297 KNSWGLNFGDQGYIRMARNSGNHCGIASYPSYP 329
>ref|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CATSF) [Canis
familiaris].
Length = 442
Score = 151 bits (382), Expect(2) = 8e-40
Identities = 97/272 (35%), Positives = 141/272 (51%), Gaps = 6/272 (2%)
Frame = +2
Query: 200 FKSWMVQHQKKYSL-EEYHHRLQVFVSNW---RKINAHNAGNHTFKLGLNQFSDMSFDEI 367
FK ++ + + Y EE R+ VF +N +KI A + G T + G+ +FSD++ +E
Sbjct: 144 FKEFVTTYNRTYETKEEAEWRMSVFSNNMVRAQKIQALDRG--TAQYGITKFSDLTEEEF 201
Query: 368 RHKYLWSEPQNCSATKGNYLRGTGPY--PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTG 541
R YL + K + + PP DWR KG V+ VK+QG CGSCW FS TG
Sbjct: 202 RTIYLNPLLRENRGKKMRLAKSISDHAPPPEWDWRSKGA-VTKVKDQGMCGSCWAFSVTG 260
Query: 542 ALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK 721
+E + G +LSL+EQ+L+DC + + C GGLPS A+ I G+ ED Y Y+
Sbjct: 261 NVEGQWFLKEGTLLSLSEQELLDCDK--VDKACLGGLPSNAYSAIMTLGGLETEDDYSYQ 318
Query: 722 GQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYS 901
G C F KA ++ D ++ N E+ + +A P+S A YR GI
Sbjct: 319 GHLQACSFSAKKARVYINDSMELSQN-EQKLAAWLAKKGPISVAINAFG-MQFYRHGISH 376
Query: 902 STSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
+P ++HAVL VGYG +GIP+W +K
Sbjct: 377 PLRPLCSPWLIDHAVLLVGYGNRSGIPFWAIK 408
Score = 31.6 bits (70), Expect(2) = 8e-40
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERG 1050
+NSWG WG GY+ + RG
Sbjct: 408 KNSWGTDWGEEGYYYLHRG 426
>ref|XP_540846.2| PREDICTED: similar to cathepsin W preproprotein [Canis familiaris].
Length = 374
Score = 118 bits (296), Expect(2) = 1e-30
Identities = 80/293 (27%), Positives = 137/293 (46%), Gaps = 27/293 (9%)
Frame = +2
Query: 200 FKSWMVQHQKKYSL-EEYHHRLQVFVSNW---RKINAHNAGNHTFKLGLNQFSDMSFDEI 367
F + +Q+ + YS EEY RL +F N +++ + G T + G+ FSD++ +E
Sbjct: 42 FALFQIQYNRSYSNPEEYARRLDIFAHNLAQAQQLEDEDLG--TAEFGVTPFSDLTEEEF 99
Query: 368 RHKYLWSEPQNCSATKGNYLRGTG---PYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTT 538
Y + + G + P PP+ DWRK +SP+K QG+C CW +
Sbjct: 100 GQFYGHQRMAGEAPSVGRKVESEEWGEPVPPTCDWRKLPGIISPIKQQGNCRCCWAMAAA 159
Query: 539 GALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPY 718
G +E+ I + + ++ Q+L+DC + GC+GG AF + N G+ YP+
Sbjct: 160 GNIEALWGIRYHQPVEVSVQELLDCGR--CGDGCKGGFTWDAFITVLNNSGLASAKDYPF 217
Query: 719 KG--QDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKG 892
G + C + K +A+++D + N E+A+ +A P++ + Y+KG
Sbjct: 218 LGNTKPHRCLAKKYKKVAWIQDFIMLQGN-EQAIAWYLATKGPITVTINM-KLLQHYQKG 275
Query: 893 IYSSTSCHKTPDKVNHAVLAVGYGEENG------------------IPYWIVK 997
+ +T P +V+H+VL VG+G+ IPYWI+K
Sbjct: 276 VIQATHTTCDPQRVDHSVLLVGFGKSKSVAGKQAEGGSSRPRPHHPIPYWILK 328
Score = 33.9 bits (76), Expect(2) = 1e-30
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERG-KTC 1059
+NSWG +WG GYF + RG TC
Sbjct: 328 KNSWGAEWGEEGYFRLHRGNNTC 350
>ref|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiaris].
Length = 459
Score = 116 bits (291), Expect(2) = 4e-30
Identities = 74/198 (37%), Positives = 106/198 (53%), Gaps = 14/198 (7%)
Frame = +2
Query: 446 PPSMDWR--KKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLS--LAEQQLVDC 613
P S DWR + NFVSPV+NQ SCGSC+ F++T LE+ + I T + L+ Q++V C
Sbjct: 229 PTSWDWRNVRGTNFVSPVRNQASCGSCYAFASTAMLEARIRILTNNTQTPILSPQEIVSC 288
Query: 614 AQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKD----V 781
+Q GC+GG P + G++ E +PY G D CK P+ + V
Sbjct: 289 SQ--YAQGCEGGFPYLIAGKYAQDFGLVEEACFPYAGSDSPCK--PNDCFRYYSSEYYYV 344
Query: 782 ANITMNDEEAMVE-AVALYNPVSFAFEVTNDFLMYRKGIYSSTSCH---KTPDKVNHAVL 949
EA+++ + + P++ AFEV +DF Y+KGIY T + NHAVL
Sbjct: 345 GGFYGACNEALMKLELVRHGPMAVAFEVYDDFFHYQKGIYYHTGLRDPFNPFELTNHAVL 404
Query: 950 AVGYGEE--NGIPYWIVK 997
VGYG + +G+ YWIVK
Sbjct: 405 LVGYGTDSASGMDYWIVK 422
Score = 33.9 bits (76), Expect(2) = 4e-30
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERG 1050
+NSWG +WG +GYF I RG
Sbjct: 422 KNSWGSRWGEDGYFRIRRG 440
>ref|XP_535784.2| PREDICTED: similar to Dipeptidyl-peptidase I precursor (DPP-I)
(DPPI) (Cathepsin C) (Cathepsin J) (Dipeptidyl
transferase), partial [Canis familiaris].
Length = 481
Score = 112 bits (281), Expect(2) = 2e-28
Identities = 72/198 (36%), Positives = 103/198 (52%), Gaps = 14/198 (7%)
Frame = +2
Query: 446 PPSMDWR--KKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLS--LAEQQLVDC 613
P S DWR + NFVSPV+NQ SCGSC+ F++T LE+ + I T + L+ Q++V C
Sbjct: 251 PTSWDWRNVRGTNFVSPVRNQASCGSCYAFASTVMLEARIRILTNNTQTPILSPQEIVSC 310
Query: 614 AQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANIT 793
+Q GC+GG P + G++ E + Y G D CK P+ + +
Sbjct: 311 SQ--YAQGCEGGFPYLIAGKYAQDFGLVDEACFSYAGSDSPCK--PNDCFHYYSSEYHYV 366
Query: 794 MN-----DEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCH---KTPDKVNHAVL 949
+E M + + P++ AFEV +DF Y+KGIY T + NHAVL
Sbjct: 367 GGFYGACNEALMKLELVRHGPMAVAFEVYDDFFHYQKGIYYHTGLRDPINPFELTNHAVL 426
Query: 950 AVGYGEE--NGIPYWIVK 997
VGYG + +G+ YWIVK
Sbjct: 427 LVGYGTDSASGMDYWIVK 444
Score = 32.3 bits (72), Expect(2) = 2e-28
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERG 1050
+NSWG +WG +GYF I RG
Sbjct: 444 KNSWGSRWGEDGYFQICRG 462
>ref|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Canis familiaris].
Length = 518
Score = 112 bits (281), Expect(2) = 2e-27
Identities = 72/235 (30%), Positives = 118/235 (50%), Gaps = 6/235 (2%)
Frame = +2
Query: 311 NHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCS---ATKGNYLRGTGPYPPSMDWRKKGNF 481
N + G+NQFS +S +E + YL S+P A +R P DWR K
Sbjct: 257 NSSAVYGINQFSYLSPEEFKAIYLRSKPSRSPRYPAEVRTSIRNVS-LPLRFDWRDK-RV 314
Query: 482 VSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQ 661
V+ V+NQ +CG CW FS GA+ESA AI + ++ QQ++DC ++NN+GC GG
Sbjct: 315 VTQVRNQQTCGGCWAFSVVGAVESAYAIKGKPLADISVQQVIDC--SYNNYGCSGGSTLN 372
Query: 662 AFEYIRYNK-GIMGEDTYPYKGQDDHCKFQPDKAIAF-VKDVANITMND-EEAMVEAVAL 832
A ++ + ++ + YP+K Q+ C + D F ++ + +D E+ M + +
Sbjct: 373 ALNWLNKTQVKLVRDSEYPFKAQNGLCHYFSDSYSGFSIRGYSAYDFSDQEDEMAKVLLT 432
Query: 833 YNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
+ P+ V D + ++ + H + + NHAVL G+ + PYWIV+
Sbjct: 433 FGPL----VVVVDAVSWQDYLGGIIQHHCSSGEANHAVLITGFDKIGSTPYWIVR 483
Score = 28.5 bits (62), Expect(2) = 2e-27
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 997 NSWGPQWGMNGYFLIERG 1050
NSWG WG++GY ++ G
Sbjct: 484 NSWGSSWGVDGYAHVKMG 501
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,482,882
Number of extensions: 1490180
Number of successful extensions: 6506
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6459
Number of HSP's successfully gapped: 29
Length of query: 364
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 260
Effective length of database: 15,407,560
Effective search space: 4005965600
Effective search space used: 4005965600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000808
(1094 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens]. 563 e-169
Alignment gi|NP_000387.1| cathepsin K preproprotein [Homo sapiens]. 199 5e-54
Alignment gi|NP_001188504.1| cathepsin L2 preproprotein [Homo sapiens]. 192 4e-53
Alignment gi|NP_001324.2| cathepsin L2 preproprotein [Homo sapiens]. 192 4e-53
Alignment gi|NP_666023.1| cathepsin L1 preproprotein [Homo sapiens]. 196 8e-53
Alignment gi|NP_001903.1| cathepsin L1 preproprotein [Homo sapiens]. 196 8e-53
Alignment gi|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapie... 180 3e-46
Alignment gi|NP_003784.2| cathepsin F precursor [Homo sapiens]. 160 1e-42
Alignment gi|NP_001186668.1| cathepsin S isoform 2 preproprotein [Homo sa... 145 8e-36
Alignment gi|NP_001326.2| cathepsin W preproprotein [Homo sapiens]. 132 4e-35
>ref|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens].
Length = 335
Score = 563 bits (1450), Expect(2) = e-169
Identities = 261/305 (85%), Positives = 277/305 (90%)
Frame = +2
Query: 98 MWAVLSLLCAGAWLLGPPACGASNLAVSSFEKLHFKSWMVQHQKKYSLEEYHHRLQVFVS 277
MWA L LLCAGAWLLG P CGA+ L V+S EK HFKSWM +H+K YS EEYHHRLQ F S
Sbjct: 1 MWATLPLLCAGAWLLGVPVCGAAELCVNSLEKFHFKSWMSKHRKTYSTEEYHHRLQTFAS 60
Query: 278 NWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTGPYPPSM 457
NWRKINAHN GNHTFK+ LNQFSDMSF EI+HKYLWSEPQNCSATK NYLRGTGPYPPS+
Sbjct: 61 NWRKINAHNNGNHTFKMALNQFSDMSFAEIKHKYLWSEPQNCSATKSNYLRGTGPYPPSV 120
Query: 458 DWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHG 637
DWRKKGNFVSPVKNQG+CGSCWTFSTTGALESA+AIATGKMLSLAEQQLVDCAQ+FNNHG
Sbjct: 121 DWRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAEQQLVDCAQDFNNHG 180
Query: 638 CQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMV 817
CQGGLPSQAFEYI YNKGIMGEDTYPY+G+D +CKFQP KAI FVKDVANIT+ DEEAMV
Sbjct: 181 CQGGLPSQAFEYILYNKGIMGEDTYPYQGKDGYCKFQPGKAIGFVKDVANITIYDEEAMV 240
Query: 818 EAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
EAVALYNPVSFAFEVT DF+MYR GIYSSTSCHKTPDKVNHAVLAVGYGE+NGIPYWIVK
Sbjct: 241 EAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEKNGIPYWIVK 300
Query: 998 THGVP 1012
P
Sbjct: 301 NSWGP 305
Score = 51.6 bits (122), Expect(2) = e-169
Identities = 22/32 (68%), Positives = 25/32 (78%), Gaps = 6/32 (18%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK------TCAAWP 1071
+NSWGPQWGMNGYFLIERGK CA++P
Sbjct: 300 KNSWGPQWGMNGYFLIERGKNMCGLAACASYP 331
>ref|NP_000387.1| cathepsin K preproprotein [Homo sapiens].
Length = 329
Score = 199 bits (505), Expect(2) = 5e-54
Identities = 111/277 (40%), Positives = 160/277 (57%), Gaps = 10/277 (3%)
Frame = +2
Query: 197 HFKSWMVQHQKKYS--LEEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSF 358
H++ W H+K+Y+ ++E RL ++ N + I+ HN G HT++L +N DM+
Sbjct: 25 HWELWKKTHRKQYNNKVDEISRRL-IWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTS 83
Query: 359 DEIRHKYLWSEPQNCSATKGNYL---RGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTF 529
+E+ K + + + L G P S+D+RKKG +V+PVKNQG CGSCW F
Sbjct: 84 EEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKG-YVTPVKNQGQCGSCWAF 142
Query: 530 STTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDT 709
S+ GALE + TGK+L+L+ Q LVDC N GC GG + AF+Y++ N+GI ED
Sbjct: 143 SSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKNRGIDSEDA 200
Query: 710 YPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVT-NDFLMYR 886
YPY GQ++ C + P A + I +E+A+ AVA PVS A + + F Y
Sbjct: 201 YPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYS 260
Query: 887 KGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
KG+Y SC+ D +NHAVLAVGYG + G +WI+K
Sbjct: 261 KGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWIIK 295
Score = 31.6 bits (70), Expect(2) = 5e-54
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGKTCA 1062
+NSWG WG GY L+ R K A
Sbjct: 295 KNSWGENWGNKGYILMARNKNNA 317
>ref|NP_001188504.1| cathepsin L2 preproprotein [Homo sapiens].
Length = 334
Score = 192 bits (488), Expect(2) = 4e-53
Identities = 107/279 (38%), Positives = 153/279 (54%), Gaps = 11/279 (3%)
Frame = +2
Query: 209 WMVQHQKKYSLEEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSFDEIRHK 376
W H++ Y E R V+ N + I HN G H F + +N F DM+ +E R
Sbjct: 32 WKATHRRLYGANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQ- 90
Query: 377 YLWSEPQNCSATKGNYLRGTG--PYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALE 550
+ +N KG R P S+DWRKKG +V+PVKNQ CGSCW FS TGALE
Sbjct: 91 -MMGCFRNQKFRKGKVFREPLFLDLPKSVDWRKKG-YVTPVKNQKQCGSCWAFSATGALE 148
Query: 551 SAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD 730
+ TGK++SL+EQ LVDC++ N GC GG ++AF+Y++ N G+ E++YPY D
Sbjct: 149 GQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD 208
Query: 731 DHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEV-TNDFLMYRKGIYSST 907
+ CK++P+ ++A + E+A+++AVA P+S A + + F Y+ GIY
Sbjct: 209 EICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEP 268
Query: 908 SCHKTPDKVNHAVLAVGYGEE----NGIPYWIVKTHGVP 1012
C + ++H VL VGYG E N YW+VK P
Sbjct: 269 DC--SSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGP 305
Score = 35.0 bits (79), Expect(2) = 4e-53
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK-------TCAAWP 1071
+NSWGP+WG NGY I + K T A++P
Sbjct: 300 KNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 332
>ref|NP_001324.2| cathepsin L2 preproprotein [Homo sapiens].
Length = 334
Score = 192 bits (488), Expect(2) = 4e-53
Identities = 107/279 (38%), Positives = 153/279 (54%), Gaps = 11/279 (3%)
Frame = +2
Query: 209 WMVQHQKKYSLEEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSFDEIRHK 376
W H++ Y E R V+ N + I HN G H F + +N F DM+ +E R
Sbjct: 32 WKATHRRLYGANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQ- 90
Query: 377 YLWSEPQNCSATKGNYLRGTG--PYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALE 550
+ +N KG R P S+DWRKKG +V+PVKNQ CGSCW FS TGALE
Sbjct: 91 -MMGCFRNQKFRKGKVFREPLFLDLPKSVDWRKKG-YVTPVKNQKQCGSCWAFSATGALE 148
Query: 551 SAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD 730
+ TGK++SL+EQ LVDC++ N GC GG ++AF+Y++ N G+ E++YPY D
Sbjct: 149 GQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD 208
Query: 731 DHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEV-TNDFLMYRKGIYSST 907
+ CK++P+ ++A + E+A+++AVA P+S A + + F Y+ GIY
Sbjct: 209 EICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEP 268
Query: 908 SCHKTPDKVNHAVLAVGYGEE----NGIPYWIVKTHGVP 1012
C + ++H VL VGYG E N YW+VK P
Sbjct: 269 DC--SSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGP 305
Score = 35.0 bits (79), Expect(2) = 4e-53
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK-------TCAAWP 1071
+NSWGP+WG NGY I + K T A++P
Sbjct: 300 KNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 332
>ref|NP_666023.1| cathepsin L1 preproprotein [Homo sapiens].
Length = 333
Score = 196 bits (497), Expect(3) = 8e-53
Identities = 107/274 (39%), Positives = 158/274 (57%), Gaps = 11/274 (4%)
Frame = +2
Query: 209 WMVQHQKKYSLEEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSFDEIRHK 376
W H + Y + E R V+ N + I HN G H+F + +N F DM+ +E R
Sbjct: 32 WKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQ- 90
Query: 377 YLWSEPQNCSATKGNYLRGTGPY--PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALE 550
+ + QN KG + Y P S+DWR+KG +V+PVKNQG CGSCW FS TGALE
Sbjct: 91 -VMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKG-YVTPVKNQGQCGSCWAFSATGALE 148
Query: 551 SAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD 730
+ TG+++SL+EQ LVDC+ N GC GGL AF+Y++ N G+ E++YPY+ +
Sbjct: 149 GQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE 208
Query: 731 DHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTND-FLMYRKGIYSST 907
+ CK+ P ++A +I E+A+++AVA P+S A + ++ FL Y++GIY
Sbjct: 209 ESCKYNPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEP 267
Query: 908 SCHKTPDKVNHAVLAVGYG----EENGIPYWIVK 997
C + + ++H VL VGYG E + YW+VK
Sbjct: 268 DC--SSEDMDHGVLVVGYGFESTESDNNKYWLVK 299
Score = 29.3 bits (64), Expect(3) = 8e-53
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 994 ENSWGPQWGMNGY 1032
+NSWG +WGM GY
Sbjct: 299 KNSWGEEWGMGGY 311
Score = 22.3 bits (46), Expect(3) = 8e-53
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Frame = +3
Query: 1017 GNEW-----VLPHRAWKDMCGLAACASYP 1088
G EW V + ++ CG+A+ ASYP
Sbjct: 303 GEEWGMGGYVKMAKDRRNHCGIASAASYP 331
>ref|NP_001903.1| cathepsin L1 preproprotein [Homo sapiens].
Length = 333
Score = 196 bits (497), Expect(3) = 8e-53
Identities = 107/274 (39%), Positives = 158/274 (57%), Gaps = 11/274 (4%)
Frame = +2
Query: 209 WMVQHQKKYSLEEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSFDEIRHK 376
W H + Y + E R V+ N + I HN G H+F + +N F DM+ +E R
Sbjct: 32 WKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQ- 90
Query: 377 YLWSEPQNCSATKGNYLRGTGPY--PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALE 550
+ + QN KG + Y P S+DWR+KG +V+PVKNQG CGSCW FS TGALE
Sbjct: 91 -VMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKG-YVTPVKNQGQCGSCWAFSATGALE 148
Query: 551 SAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD 730
+ TG+++SL+EQ LVDC+ N GC GGL AF+Y++ N G+ E++YPY+ +
Sbjct: 149 GQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE 208
Query: 731 DHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTND-FLMYRKGIYSST 907
+ CK+ P ++A +I E+A+++AVA P+S A + ++ FL Y++GIY
Sbjct: 209 ESCKYNPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEP 267
Query: 908 SCHKTPDKVNHAVLAVGYG----EENGIPYWIVK 997
C + + ++H VL VGYG E + YW+VK
Sbjct: 268 DC--SSEDMDHGVLVVGYGFESTESDNNKYWLVK 299
Score = 29.3 bits (64), Expect(3) = 8e-53
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 994 ENSWGPQWGMNGY 1032
+NSWG +WGM GY
Sbjct: 299 KNSWGEEWGMGGY 311
Score = 22.3 bits (46), Expect(3) = 8e-53
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Frame = +3
Query: 1017 GNEW-----VLPHRAWKDMCGLAACASYP 1088
G EW V + ++ CG+A+ ASYP
Sbjct: 303 GEEWGMGGYVKMAKDRRNHCGIASAASYP 331
>ref|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapiens].
Length = 331
Score = 180 bits (456), Expect(2) = 3e-46
Identities = 107/278 (38%), Positives = 151/278 (54%), Gaps = 11/278 (3%)
Frame = +2
Query: 197 HFKSWMVQHQKKYSL--EEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSF 358
H+ W + K+Y EE RL ++ N + + HN G H++ LG+N DM+
Sbjct: 27 HWHLWKKTYGKQYKEKNEEAVRRL-IWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTS 85
Query: 359 DEIRHKYLWSEPQNCSATKGNYLRGTGP---YPPSMDWRKKGNFVSPVKNQGSCGSCWTF 529
+E+ L S + S + N + P P S+DWR+KG V+ VK QGSCG+CW F
Sbjct: 86 EEVMS--LMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKG-CVTEVKYQGSCGACWAF 142
Query: 530 STTGALESAVAIATGKMLSLAEQQLVDCA-QNFNNHGCQGGLPSQAFEYIRYNKGIMGED 706
S GALE+ + + TGK++SL+ Q LVDC+ + + N GC GG + AF+YI NKGI +
Sbjct: 143 SAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDA 202
Query: 707 TYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTN-DFLMY 883
+YPYK D C++ A + E+ + EAVA PVS + + F +Y
Sbjct: 203 SYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 262
Query: 884 RKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
R G+Y SC VNH VL VGYG+ NG YW+VK
Sbjct: 263 RSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVK 297
Score = 24.6 bits (52), Expect(2) = 3e-46
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK 1053
+NSWG +G GY + R K
Sbjct: 297 KNSWGHNFGEEGYIRMARNK 316
>ref|NP_003784.2| cathepsin F precursor [Homo sapiens].
Length = 484
Score = 160 bits (406), Expect(2) = 1e-42
Identities = 99/271 (36%), Positives = 147/271 (54%), Gaps = 5/271 (1%)
Frame = +2
Query: 200 FKSWMVQHQKKY-SLEEYHHRLQVFVSNW---RKINAHNAGNHTFKLGLNQFSDMSFDEI 367
FK++++ + + Y S EE RL VFV+N +KI A + G T + G+ +FSD++ +E
Sbjct: 187 FKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRG--TAQYGVTKFSDLTEEEF 244
Query: 368 RHKYLWSEPQNCSATKGNYLRGTGPY-PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGA 544
R YL + + K + G PP DWR KG V+ VK+QG CGSCW FS TG
Sbjct: 245 RTIYLNTLLRKEPGNKMKQAKSVGDLAPPEWDWRSKGA-VTKVKDQGMCGSCWAFSVTGN 303
Query: 545 LESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKG 724
+E + G +LSL+EQ+L+DC + + C GGLPS A+ I+ G+ ED Y Y+G
Sbjct: 304 VEGQWFLNQGTLLSLSEQELLDCDK--MDKACMGGLPSNAYSAIKNLGGLETEDDYSYQG 361
Query: 725 QDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSS 904
C F +KA ++ D ++ N E+ + +A P+S A YR GI
Sbjct: 362 HMQSCNFSAEKAKVYINDSVELSQN-EQKLAAWLAKRGPISVAINAFG-MQFYRHGISRP 419
Query: 905 TSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
+P ++HAVL VGYG + +P+W +K
Sbjct: 420 LRPLCSPWLIDHAVLLVGYGNRSDVPFWAIK 450
Score = 31.6 bits (70), Expect(2) = 1e-42
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERG 1050
+NSWG WG GY+ + RG
Sbjct: 450 KNSWGTDWGEKGYYYLHRG 468
>ref|NP_001186668.1| cathepsin S isoform 2 preproprotein [Homo sapiens].
Length = 281
Score = 145 bits (365), Expect(2) = 8e-36
Identities = 72/169 (42%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Frame = +2
Query: 497 NQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCA-QNFNNHGCQGGLPSQAFEY 673
+ GSCG+CW FS GALE+ + + TGK++SL+ Q LVDC+ + + N GC GG + AF+Y
Sbjct: 82 DMGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQY 141
Query: 674 IRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFA 853
I NKGI + +YPYK D C++ A + E+ + EAVA PVS
Sbjct: 142 IIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVG 201
Query: 854 FEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
+ + F +YR G+Y SC VNH VL VGYG+ NG YW+VK
Sbjct: 202 VDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVK 247
Score = 24.6 bits (52), Expect(2) = 8e-36
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK 1053
+NSWG +G GY + R K
Sbjct: 247 KNSWGHNFGEEGYIRMARNK 266
>ref|NP_001326.2| cathepsin W preproprotein [Homo sapiens].
Length = 376
Score = 132 bits (332), Expect(2) = 4e-35
Identities = 99/338 (29%), Positives = 160/338 (47%), Gaps = 32/338 (9%)
Frame = +2
Query: 80 VAATAEMWAVLSLLCAGA--WLLGPPACGASNLAVSSFE-KLHFKSWMVQHQKKY-SLEE 247
+A TA +L+LL AG + GP A +L E K FK + +Q + Y S EE
Sbjct: 1 MALTAHPSCLLALLVAGLAQGIRGP--LRAQDLGPQPLELKEAFKLFQIQFNRSYLSPEE 58
Query: 248 YHHRLQVFVSNW---RKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKG 418
+ HRL +F N +++ + G T + G+ FSD++ +E Y + + G
Sbjct: 59 HAHRLDIFAHNLAQAQRLQEEDLG--TAEFGVTPFSDLTEEEFGQLYGYRRAAGGVPSMG 116
Query: 419 NYLRGTGP---YPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSL 589
+R P P S DWRK +SP+K+Q +C CW + G +E+ I+ + +
Sbjct: 117 REIRSEEPEESVPFSCDWRKVAGAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDV 176
Query: 590 AEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDK--AI 763
+ Q+L+DC + GC GG AF + N G+ E YP++G+ + P K +
Sbjct: 177 SVQELLDCGR--CGDGCHGGFVWDAFITVLNNSGLASEKDYPFQGKVRAHRCHPKKYQKV 234
Query: 764 AFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHA 943
A+++D + N+E + + +A Y P++ + +YRKG+ +T P V+H+
Sbjct: 235 AWIQDFI-MLQNNEHRIAQYLATYGPITVTINM-KPLQLYRKGVIKATPTTCDPQLVDHS 292
Query: 944 VLAVGYG---EENGI-----------------PYWIVK 997
VL VG+G E GI PYWI+K
Sbjct: 293 VLLVGFGSVKSEEGIWAETVSSQSQPQPPHPTPYWILK 330
Score = 35.0 bits (79), Expect(2) = 4e-35
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERG-KTC 1059
+NSWG QWG GYF + RG TC
Sbjct: 330 KNSWGAQWGEKGYFRLHRGSNTC 352
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,514,756
Number of extensions: 1456597
Number of successful extensions: 5773
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 5714
Number of HSP's successfully gapped: 49
Length of query: 364
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,868,908
Effective search space: 3865916080
Effective search space used: 3865916080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000808
(1094 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031827.2| pro-cathepsin H preproprotein [Mus musculus]. 509 e-151
Alignment gi|NP_031828.2| cathepsin K precursor [Mus musculus]. 197 2e-53
Alignment gi|NP_081620.2| cathepsin L-like 3 [Mus musculus]. 187 1e-50
Alignment gi|NP_062414.3| cathepsin 8 [Mus musculus]. 186 2e-50
Alignment gi|NP_034114.1| cathepsin L1 preproprotein [Mus musculus]. 184 1e-49
Alignment gi|NP_036137.1| cathepsin J [Mus musculus]. 181 5e-49
Alignment gi|NP_954599.2| hypothetical protein LOC218275 [Mus musculus]. 181 3e-48
Alignment gi|NP_062412.1| cathepsin 7 [Mus musculus]. 187 9e-48
Alignment gi|NP_067420.1| cathepsin 6 [Mus musculus]. 179 3e-47
Alignment gi|NP_071721.2| cathepsin M precursor [Mus musculus]. 179 6e-47
>ref|NP_031827.2| pro-cathepsin H preproprotein [Mus musculus].
Length = 333
Score = 509 bits (1311), Expect(2) = e-151
Identities = 239/300 (79%), Positives = 261/300 (87%)
Frame = +2
Query: 98 MWAVLSLLCAGAWLLGPPACGASNLAVSSFEKLHFKSWMVQHQKKYSLEEYHHRLQVFVS 277
MWA L LLCAGAWLL A + L V++ EK HFKSWM QHQK YS EY+HRLQ+F +
Sbjct: 1 MWAALPLLCAGAWLLSTGA--TAELTVNAIEKFHFKSWMKQHQKTYSSVEYNHRLQMFAN 58
Query: 278 NWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTGPYPPSM 457
NWRKI AHN NHTFK+ LNQFSDMSF EI+HK+LWSEPQNCSATK NYLRGTGPYP SM
Sbjct: 59 NWRKIQAHNQRNHTFKMALNQFSDMSFAEIKHKFLWSEPQNCSATKSNYLRGTGPYPSSM 118
Query: 458 DWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHG 637
DWRKKGN VSPVKNQG+CGSCWTFSTTGALESAVAIA+GKMLSLAEQQLVDCAQ FNNHG
Sbjct: 119 DWRKKGNVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMLSLAEQQLVDCAQAFNNHG 178
Query: 638 CQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMV 817
C+GGLPSQAFEYI YNKGIM ED+YPY G+D C+F P KA+AFVK+V NIT+NDE AMV
Sbjct: 179 CKGGLPSQAFEYILYNKGIMEEDSYPYIGKDSSCRFNPQKAVAFVKNVVNITLNDEAAMV 238
Query: 818 EAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
EAVALYNPVSFAFEVT DFLMY+ G+YSS SCHKTPDKVNHAVLAVGYGE+NG+ YWIVK
Sbjct: 239 EAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQNGLLYWIVK 298
Score = 45.8 bits (107), Expect(2) = e-151
Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 6/32 (18%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK------TCAAWP 1071
+NSWG QWG NGYFLIERGK CA++P
Sbjct: 298 KNSWGSQWGENGYFLIERGKNMCGLAACASYP 329
>ref|NP_031828.2| cathepsin K precursor [Mus musculus].
Length = 329
Score = 197 bits (500), Expect(2) = 2e-53
Identities = 114/289 (39%), Positives = 166/289 (57%), Gaps = 12/289 (4%)
Frame = +2
Query: 167 NLAVSSFEKL--HFKSWMVQHQKKYS--LEEYHHRLQVFVSNWRKINAHNA----GNHTF 322
+ A+S E L ++ W HQK+Y+ ++E RL ++ N ++I+AHN G HT+
Sbjct: 13 SFALSPEEMLDTQWELWKKTHQKQYNSKVDEISRRL-IWEKNLKQISAHNLEASLGVHTY 71
Query: 323 KLGLNQFSDMSFDEIRHKY--LWSEPQNCSATKGNYL-RGTGPYPPSMDWRKKGNFVSPV 493
+L +N DM+ +E+ K L P + Y G P S+D+RKKG +V+PV
Sbjct: 72 ELAMNHLGDMTSEEVVQKMTGLRIPPSRSYSNDTLYTPEWEGRVPDSIDYRKKG-YVTPV 130
Query: 494 KNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEY 673
KNQG CGSCW FS+ GALE + TGK+L+L+ Q LVDC N+GC GG + AF+Y
Sbjct: 131 KNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVT--ENYGCGGGYMTTAFQY 188
Query: 674 IRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFA 853
++ N GI ED YPY GQD+ C + A + I + +E+A+ AVA P+S +
Sbjct: 189 VQQNGGIDSEDAYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVS 248
Query: 854 FEVT-NDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
+ + F Y +G+Y +C + D VNHAVL VGYG + G +WI+K
Sbjct: 249 IDASLASFQFYSRGVYYDENCDR--DNVNHAVLVVGYGTQKGSKHWIIK 295
Score = 31.2 bits (69), Expect(2) = 2e-53
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGKTCA 1062
+NSWG WG GY L+ R K A
Sbjct: 295 KNSWGESWGNKGYALLARNKNNA 317
>ref|NP_081620.2| cathepsin L-like 3 [Mus musculus].
Length = 331
Score = 187 bits (475), Expect(3) = 1e-50
Identities = 109/304 (35%), Positives = 166/304 (54%), Gaps = 7/304 (2%)
Frame = +2
Query: 107 VLSLLCAGAWLLGPPACGASNLAVSSFEKLHFKSWMVQHQKKYSLEEYHHRLQVFVSNWR 286
+L+ LC G + PA S AV ++ W +H+K Y++ + + V+ +N +
Sbjct: 6 LLATLCLGV-VSAAPAHNPSLDAV-------WEEWKTKHKKTYNMNDEGQKRAVWENNKK 57
Query: 287 KINAHNA----GNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGT-GPYPP 451
I+ HN G H F L +N F D++ E R + Q + G P
Sbjct: 58 MIDLHNEDYLKGKHGFSLEMNAFGDLTNTEFRELMTGFQGQKTKMMMKVFQEPLLGDVPK 117
Query: 452 SMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNN 631
S+DWR G +V+PVK+QGSCGSCW FS G+LE + TGK++ L+ Q LVDC+ + N
Sbjct: 118 SVDWRDHG-YVTPVKDQGSCGSCWAFSAVGSLEGQMFRKTGKLVPLSVQNLVDCSWSQGN 176
Query: 632 HGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEA 811
GC GGLP AF+Y++ N G+ +YPY+ + C++ P + A V N+ + E+A
Sbjct: 177 QGCDGGLPDLAFQYVKDNGGLDTSVSYPYEALNGTCRYNPKNSAATVTGFVNV-QSSEDA 235
Query: 812 MVEAVALYNPVSFAFEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEE-NGIPY 985
+++AVA P+S + + F Y++G+Y C T ++HAVL VGYGEE +G Y
Sbjct: 236 LMKAVATVGPISVGIDTKHKSFQFYKEGMYYEPDCSST--VLDHAVLVVGYGEESDGRKY 293
Query: 986 WIVK 997
W+VK
Sbjct: 294 WLVK 297
Score = 31.2 bits (69), Expect(3) = 1e-50
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLI--ERGKTC 1059
+NSWG WGMNGY + +R C
Sbjct: 297 KNSWGRDWGMNGYIKMAKDRNNNC 320
Score = 21.6 bits (44), Expect(3) = 1e-50
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 1059 CGLAACASYPI 1091
CG+A+ ASYP+
Sbjct: 320 CGIASDASYPV 330
>ref|NP_062414.3| cathepsin 8 [Mus musculus].
Length = 333
Score = 186 bits (471), Expect(2) = 2e-50
Identities = 108/304 (35%), Positives = 163/304 (53%), Gaps = 12/304 (3%)
Frame = +2
Query: 131 AWLLGPPACGASNLAVSSFEKL--HFKSWMVQHQKKYSLEEYHHRLQVFVSNWRKINAHN 304
A LL G + + SS L ++ W + K YS+EE + V+ N + + HN
Sbjct: 4 AVLLAILCLGVAEVTQSSDPSLDSEWQEWKRKFNKNYSMEEEGQKRAVWEENMKLVKQHN 63
Query: 305 A----GNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTGPYPPSMDWRKK 472
G F + +N F DM+ +E R N K + G P +DWRK+
Sbjct: 64 IEYDQGKKNFTMDVNAFGDMTGEEYRKMLTDIPVPNFRKKKSIHQPIAGYLPKFVDWRKR 123
Query: 473 GNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGL 652
G V+PVKNQG+C SCW FS GA+E + TGK++ L+ Q LVDC++ N GC G
Sbjct: 124 G-CVTPVKNQGTCNSCWAFSAAGAIEGQMFRKTGKLVPLSTQNLVDCSRLEGNFGCFKGS 182
Query: 653 PSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVAL 832
A +Y+ N+G+ E TYPYKG D HC++ P+++ A + + ++ N E+ ++ AVA
Sbjct: 183 TFLALKYVWKNRGLEAESTYPYKGTDGHCRYHPERSAARITSFSFVS-NSEKDLMRAVAT 241
Query: 833 YNPVSFAFEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYG----EENGIPYWIVK 997
P+S + + F +YR+GIY C + + +NH+VL VGYG E +G YW++K
Sbjct: 242 IGPISVGIDARHKSFRLYREGIYYEPKC--SSNIINHSVLVVGYGYEGKESDGNKYWLIK 299
Query: 998 -THG 1006
+HG
Sbjct: 300 NSHG 303
Score = 32.3 bits (72), Expect(2) = 2e-50
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK 1053
+NS G QWGMNGY + RG+
Sbjct: 299 KNSHGEQWGMNGYMKLARGR 318
>ref|NP_034114.1| cathepsin L1 preproprotein [Mus musculus].
Length = 334
Score = 184 bits (468), Expect(2) = 1e-49
Identities = 110/295 (37%), Positives = 158/295 (53%), Gaps = 14/295 (4%)
Frame = +2
Query: 155 CGASNLAVSSFEKL---HFKSWMVQHQKKYSLEEYHHRLQVFVSNWRKINAHNA----GN 313
C + LA F++ + W H++ Y E R ++ N R I HN G
Sbjct: 11 CLGTALATPKFDQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQLHNGEYSNGQ 70
Query: 314 HTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTG--PYPPSMDWRKKGNFVS 487
H F + +N F DM+ +E R Q KG + P S+DWR+KG V+
Sbjct: 71 HGFSMEMNAFGDMTNEEFRQVVNGYRHQKHK--KGRLFQEPLMLKIPKSVDWREKG-CVT 127
Query: 488 PVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAF 667
PVKNQG CGSCW FS +G LE + + TGK++SL+EQ LVDC+ N GC GGL AF
Sbjct: 128 PVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNGGLMDFAF 187
Query: 668 EYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVS 847
+YI+ N G+ E++YPY+ +D CK++ + A+A +I E+A+++AVA P+S
Sbjct: 188 QYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTGFVDIP-QQEKALMKAVATVGPIS 246
Query: 848 FAFEVTNDFL-MYRKGIYSSTSCHKTPDKVNHAVLAVGYGEE----NGIPYWIVK 997
A + ++ L Y GIY +C + ++H VL VGYG E N YW+VK
Sbjct: 247 VAMDASHPSLQFYSSGIYYEPNC--SSKNLDHGVLLVGYGYEGTDSNKNKYWLVK 299
Score = 31.2 bits (69), Expect(2) = 1e-49
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK-------TCAAWP 1071
+NSWG +WGM GY I + + T A++P
Sbjct: 299 KNSWGSEWGMEGYIKIAKDRDNHCGLATAASYP 331
>ref|NP_036137.1| cathepsin J [Mus musculus].
Length = 333
Score = 181 bits (458), Expect(2) = 5e-49
Identities = 107/276 (38%), Positives = 153/276 (55%), Gaps = 10/276 (3%)
Frame = +2
Query: 200 FKSWMVQHQKKYSLEEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSFDEI 367
+K W ++ K YS EE R V+ N R I HN G + F + +N+F D + +E
Sbjct: 29 WKDWKTKYAKSYSPEEALRRA-VWEENMRMIKLHNKENSLGKNNFTMKMNKFGDQTSEEF 87
Query: 368 RHKYLWSEPQNCSATKGNYLRGTG-PYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGA 544
R K + + P + T + P DWR++G +V+PV+NQG CGSCW F+ GA
Sbjct: 88 R-KSIDNIPIPAAMTDPHAQNHVSIGLPDYKDWREEG-YVTPVRNQGKCGSCWAFAAAGA 145
Query: 545 LESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKG 724
+E + TG + L+ Q L+DC++ N GCQ G QAFEY+ NKG+ E TYPY+G
Sbjct: 146 IEGQMFWKTGNLTPLSVQNLLDCSKTVGNKGCQSGTAHQAFEYVLKNKGLEAEATYPYEG 205
Query: 725 QDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTND-FLMYRKGIYS 901
+D C+++ + A A + D N+ N+ V AVA PVS A + ++D F Y GIY
Sbjct: 206 KDGPCRYRSENASANITDYVNLPPNELYLWV-AVASIGPVSAAIDASHDSFRFYNGGIYY 264
Query: 902 STSCHKTPDKVNHAVLAVGYGEE----NGIPYWIVK 997
+C + VNHAVL VGYG E +G YW++K
Sbjct: 265 EPNC--SSYFVNHAVLVVGYGSEGDVKDGNNYWLIK 298
Score = 32.7 bits (73), Expect(2) = 5e-49
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIER 1047
+NSWG +WGMNGY I +
Sbjct: 298 KNSWGEEWGMNGYMQIAK 315
>ref|NP_954599.2| hypothetical protein LOC218275 [Mus musculus].
Length = 330
Score = 181 bits (460), Expect(2) = 3e-48
Identities = 106/303 (34%), Positives = 160/303 (52%), Gaps = 6/303 (1%)
Frame = +2
Query: 107 VLSLLCAGAWLLGPPACGASNLAVSSFEKLHFKSWMVQHQKKYSLEEYHHRLQVFVSNWR 286
+L+ LC G + PA S AV ++ W +H+K Y++ E + V+ +N +
Sbjct: 6 LLATLCLGV-VSAAPAHDPSLDAV-------WEEWKTKHRKTYNMNEEAQKRAVWENNMK 57
Query: 287 KINAHNA----GNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTGPYPPS 454
I HN G H F L +N F D++ E R + G P S
Sbjct: 58 MIGLHNEDYLKGKHGFNLEMNAFGDLTNTEFRELMTGFQSMGHKEMTIFQEPLLGDVPKS 117
Query: 455 MDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNH 634
+DWR G +V+PVK+QG CGSCW FS G+LE + TGK++ L+EQ L+DC+ ++ N
Sbjct: 118 VDWRDHG-YVTPVKDQGHCGSCWAFSAVGSLEGQIFRKTGKLVPLSEQNLMDCSWSYGNV 176
Query: 635 GCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAM 814
GC GGL AF+Y++ N+G+ ++Y Y+ D C++ P + + + ++ E+A+
Sbjct: 177 GCNGGLMELAFQYVKENRGLDTRESYAYEAWDGPCRYDPKYSAVNITGFVKVPLS-EDAL 235
Query: 815 VEAVALYNPVSFAFEV-TNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEE-NGIPYW 988
+ AVA PVS + + F YR G Y C T ++HAVL VGYGEE +G YW
Sbjct: 236 MNAVASVGPVSVGIDTHHHSFRFYRGGTYYEPDCSST--NLDHAVLVVGYGEESDGRKYW 293
Query: 989 IVK 997
+VK
Sbjct: 294 LVK 296
Score = 29.3 bits (64), Expect(2) = 3e-48
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK 1053
+NSWG WGM+GY + + +
Sbjct: 296 KNSWGEDWGMDGYIKMAKDR 315
>ref|NP_062412.1| cathepsin 7 [Mus musculus].
Length = 331
Score = 187 bits (476), Expect = 9e-48
Identities = 106/315 (33%), Positives = 173/315 (54%), Gaps = 11/315 (3%)
Frame = +2
Query: 110 LSLLCAGAWLLGPPACGASNLAVSSFEKLHFKSWMVQHQKKYSLEEYHHRLQVFVSNWRK 289
LS+LC G L P A ++ W + + YS EE R V+ N +
Sbjct: 7 LSILCLGVALAAP--------APDYNLDAEWEEWKRSNDRTYSPEEEKQRRAVWEGNVKW 58
Query: 290 INAHNAGN----HTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTGP-YPPS 454
I H N + F + +N+F DM+ +E++ + +E + G +++ P PP+
Sbjct: 59 IKQHIMENGLWMNNFTIEMNEFGDMTGEEMK---MLTESSSYPLRNGKHIQKRNPKIPPT 115
Query: 455 MDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNH 634
+DWRK+G +V+PV+ QGSCG+CW FS T +E + TGK++ L+ Q L+DC+ ++
Sbjct: 116 LDWRKEG-YVTPVRRQGSCGACWAFSVTACIEGQLFKKTGKLIPLSVQNLMDCSVSYGTK 174
Query: 635 GCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAM 814
GC GG P AF+Y++ N G+ E TYPY+ + HC+++P++++ V + N EEA+
Sbjct: 175 GCDGGRPYDAFQYVKNNGGLEAEATYPYEAKAKHCRYRPERSVVKVNRFFVVPRN-EEAL 233
Query: 815 VEAVALYNPVSFAFEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYG----EENGI 979
++A+ + P++ A + ++ F YR GIY C K D ++H +L VGYG E
Sbjct: 234 LQALVTHGPIAVAIDGSHASFHSYRGGIYHEPKCRK--DTLDHGLLLVGYGYEGHESENR 291
Query: 980 PYWIVK-THGVPSGE 1021
YW++K +HG GE
Sbjct: 292 KYWLLKNSHGERWGE 306
>ref|NP_067420.1| cathepsin 6 [Mus musculus].
Length = 334
Score = 179 bits (454), Expect(2) = 3e-47
Identities = 109/310 (35%), Positives = 163/310 (52%), Gaps = 14/310 (4%)
Frame = +2
Query: 110 LSLLCAGAWLLGPPACGASNLAVSSFEKLHFKSWMVQHQKKYSLEEYHHRLQVFVSNWRK 289
L++LC G G+ LA+ + W Q++K Y++EE R ++ N R
Sbjct: 7 LAILCLGV--------GSGALALDPNLNAEWHDWKKQYEKSYTMEEEGLRRAIWEENMRM 58
Query: 290 INAHN----AGNHTFKLGLNQFSDMSFDEIRHKY----LWSEPQNCSATKGNYLRGTGPY 445
I HN G + F L +N+F D++ +E+R +WS + K R G
Sbjct: 59 IKLHNWENSLGKNNFTLKMNEFGDLTPEELRKMMNNFPIWSHKKRKIIRK----RAVGDV 114
Query: 446 PPS-MDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQN 622
P +DWRKKG +V+ V+ Q C SCW F+ GA+E + TGK+ L+ Q LVDC +
Sbjct: 115 LPKFVDWRKKG-YVTRVRRQKFCNSCWAFAVNGAIEGQMFKKTGKLTPLSVQNLVDCTKT 173
Query: 623 FNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMND 802
N GCQ G P A+EY+ N G+ E TYPY+G++ C++ P + A + ++
Sbjct: 174 QGNDGCQWGDPYIAYEYVLNNGGLEAEATYPYEGKEGPCRYNPKNSKAEITGFVSLP-ES 232
Query: 803 EEAMVEAVALYNPVSFAFEVT-NDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYG----E 967
E+ ++EAVA P+S A + + N F Y GIY +C + + VNHAVL VGYG E
Sbjct: 233 EDILMEAVATIGPISAAVDASFNRFSFYDGGIYHQPNC--SNNTVNHAVLVVGYGTEGNE 290
Query: 968 ENGIPYWIVK 997
+G YW++K
Sbjct: 291 TDGNKYWLIK 300
Score = 28.5 bits (62), Expect(2) = 3e-47
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIER 1047
+NSWG +WG+ GY I R
Sbjct: 300 KNSWGRRWGIGGYMKIIR 317
>ref|NP_071721.2| cathepsin M precursor [Mus musculus].
Length = 333
Score = 179 bits (454), Expect(2) = 6e-47
Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 9/305 (2%)
Frame = +2
Query: 110 LSLLCAGAWLLGPPACGASNLAVSSFEKLHFKSWMVQHQKKYSLEEYHHRLQVFVSNWRK 289
L++LC G L P A + ++ W +++ K YSLEE + V+ N +K
Sbjct: 7 LAMLCLGMALPSP--------APDPILDVEWQKWKIKYGKAYSLEEEGQKRAVWEDNMKK 58
Query: 290 INAHNA----GNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTGPYPPSM 457
I HN G H F + +N F DM+ +E R + K R + P +
Sbjct: 59 IKLHNGENGLGKHGFTMEMNAFGDMTLEEFRKVMIEIPVPTVKKGKSVQKRLSVNLPKFI 118
Query: 458 DWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHG 637
+W+K+G +V+PV+ QG C SCW FS TGA+E + TG+++ L+ Q LVDC++ N G
Sbjct: 119 NWKKRG-YVTPVQTQGRCNSCWAFSVTGAIEGQMFRKTGQLIPLSVQNLVDCSRPQGNWG 177
Query: 638 CQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMV 817
C G A Y+ N G+ E TYPY+ +D C++ P+ + A + + N E+A++
Sbjct: 178 CYLGNTYLALHYVMENGGLESEATYPYEEKDGSCRYSPENSTANITGFEFVPKN-EDALM 236
Query: 818 EAVALYNPVSFAFEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYG----EENGIP 982
AVA P+S A + + FL Y++GIY +C + V H++L VGYG E +G
Sbjct: 237 NAVASIGPISVAIDARHASFLFYKRGIYYEPNC--SSSVVTHSMLLVGYGFTGRESDGRK 294
Query: 983 YWIVK 997
YW+VK
Sbjct: 295 YWLVK 299
Score = 27.3 bits (59), Expect(2) = 6e-47
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK 1053
+NS G QWG GY I R K
Sbjct: 299 KNSMGTQWGNKGYMKISRDK 318
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,978,703
Number of extensions: 1215072
Number of successful extensions: 4737
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 4649
Number of HSP's successfully gapped: 61
Length of query: 364
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 261
Effective length of database: 12,523,851
Effective search space: 3268725111
Effective search space used: 3268725111
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000808
(1094 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999094.1| pro-cathepsin H precursor [Sus scrofa]. 637 0.0
Alignment gi|NP_999467.1| cathepsin K precursor [Sus scrofa]. 197 1e-53
Alignment gi|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa]. 192 1e-51
Alignment gi|NP_999057.1| cathepsin L1 precursor [Sus scrofa]. 181 4e-49
Alignment gi|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa]. 185 3e-47
Alignment gi|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa]. 185 3e-47
Alignment gi|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa]. 155 5e-41
Alignment gi|XP_003122571.1| PREDICTED: cathepsin W-like [Sus scrofa]. 114 3e-30
Alignment gi|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus ... 115 1e-29
Alignment gi|NP_001090927.1| cathepsin B precursor [Sus scrofa]. 84 2e-19
>ref|NP_999094.1| pro-cathepsin H precursor [Sus scrofa].
Length = 335
Score = 637 bits (1644), Expect(2) = 0.0
Identities = 301/305 (98%), Positives = 301/305 (98%)
Frame = +2
Query: 98 MWAVLSLLCAGAWLLGPPACGASNLAVSSFEKLHFKSWMVQHQKKYSLEEYHHRLQVFVS 277
MWAVLSLLCAGAWLLGPPACGASNLAVSSFEKLHFKSWMVQHQKKYSLEEYHHRLQVFVS
Sbjct: 1 MWAVLSLLCAGAWLLGPPACGASNLAVSSFEKLHFKSWMVQHQKKYSLEEYHHRLQVFVS 60
Query: 278 NWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTGPYPPSM 457
NWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTGPYPPSM
Sbjct: 61 NWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTGPYPPSM 120
Query: 458 DWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHG 637
DWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHG
Sbjct: 121 DWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHG 180
Query: 638 CQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMV 817
CQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMV
Sbjct: 181 CQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMV 240
Query: 818 EAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
EAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK
Sbjct: 241 EAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 300
Query: 998 THGVP 1012
P
Sbjct: 301 NSWGP 305
Score = 51.6 bits (122), Expect(2) = 0.0
Identities = 22/32 (68%), Positives = 25/32 (78%), Gaps = 6/32 (18%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGK------TCAAWP 1071
+NSWGPQWGMNGYFLIERGK CA++P
Sbjct: 300 KNSWGPQWGMNGYFLIERGKNMCGLAACASYP 331
>ref|NP_999467.1| cathepsin K precursor [Sus scrofa].
Length = 330
Score = 197 bits (500), Expect(2) = 1e-53
Identities = 111/273 (40%), Positives = 160/273 (58%), Gaps = 10/273 (3%)
Frame = +2
Query: 209 WMVQHQKKYS--LEEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSFDEIR 370
W ++K+Y+ ++E RL ++ N + I+ HN G HT++L +N DM+ +E+
Sbjct: 30 WKKTYRKQYNSKVDEISRRL-IWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVV 88
Query: 371 HKY--LWSEPQNCSATKGNYLRG-TGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTG 541
K L P + + Y+ G P S+D+RKKG +V+PVKNQG CGSCW FS+ G
Sbjct: 89 QKMTGLKVPPSHSRSNDTLYIPDWEGRTPDSIDYRKKG-YVTPVKNQGQCGSCWAFSSVG 147
Query: 542 ALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK 721
ALE + TGK+L+L+ Q LVDC N GC GG + AF+Y++ N+GI ED YPY
Sbjct: 148 ALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV 205
Query: 722 GQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVT-NDFLMYRKGIY 898
GQD++C + P A + I +E+A+ AVA PVS A + + F Y KG+Y
Sbjct: 206 GQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVY 265
Query: 899 SSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
+C+ D +NHAVLAVGYG + G +WI+K
Sbjct: 266 YDENCNS--DNLNHAVLAVGYGIQKGKKHWIIK 296
Score = 31.6 bits (70), Expect(2) = 1e-53
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERGKTCA 1062
+NSWG WG GY L+ R K A
Sbjct: 296 KNSWGENWGNKGYILMARNKNNA 318
>ref|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa].
Length = 332
Score = 192 bits (487), Expect(3) = 1e-51
Identities = 106/271 (39%), Positives = 151/271 (55%), Gaps = 8/271 (2%)
Frame = +2
Query: 209 WMVQHQKKYSLEEYHHRLQVFVSNWRKINAHN----AGNHTFKLGLNQFSDMSFDEIRHK 376
W H+K Y L E R ++ N + I HN G H+F + +N F DM+ +E R
Sbjct: 32 WKATHRKLYGLNEEGRRRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKT 91
Query: 377 YLWSEPQNCSATKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESA 556
+ Q K G+ P S+DWR+KG +V+ VKNQG CGSCW FS TGALE
Sbjct: 92 MNGFQNQKHKKGKVFLDAGSALTPHSVDWREKG-YVTAVKNQGHCGSCWAFSATGALEGQ 150
Query: 557 VAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDH 736
+ T K++SL+EQ LVDC+ N GC GGL AF+YI+ N G+ E++YPY G+D
Sbjct: 151 MFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGS 210
Query: 737 CKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTND-FLMYRKGIYSSTSC 913
CK++P + A +I E+A+++AVA P+S + +++ F Y GIY C
Sbjct: 211 CKYKPQSSAANDTGYVDIP-KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEPQC 269
Query: 914 HKTPDKVNHAVLAVGYGEE---NGIPYWIVK 997
+ + ++H VL VGYG E + YW+VK
Sbjct: 270 --SSEDLDHGVLVVGYGVEGAHSNNKYWLVK 298
Score = 28.1 bits (61), Expect(3) = 1e-51
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 994 ENSWGPQWGMNGY 1032
+NSWG WGM+GY
Sbjct: 298 KNSWGNTWGMDGY 310
Score = 22.3 bits (46), Expect(3) = 1e-51
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Frame = +3
Query: 1017 GNEWVLPH--RAWKDM---CGLAACASYPI 1091
GN W + + KD CG+A ASYP+
Sbjct: 302 GNTWGMDGYIKMTKDQNNHCGIATMASYPV 331
>ref|NP_999057.1| cathepsin L1 precursor [Sus scrofa].
Length = 334
Score = 181 bits (459), Expect(2) = 4e-49
Identities = 106/280 (37%), Positives = 154/280 (55%), Gaps = 12/280 (4%)
Frame = +2
Query: 209 WMVQHQKKYSLEEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSFDEIRHK 376
W H + Y + E R V+ N + I HN G H F + +N F DM+ +E R
Sbjct: 32 WKATHGRLYGMNEEGWRRAVWEKNMKMIELHNQEYSQGKHGFSMAMNAFGDMTNEEFRQ- 90
Query: 377 YLWSEPQNCSATKGNYLRGTG--PYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALE 550
+ + QN KG + P S+DWR+KG +V+ VKNQG CGSCW FS TGALE
Sbjct: 91 -VMNGFQNQKHKKGKVFHESLVLEVPKSVDWREKG-YVTAVKNQGQCGSCWAFSATGALE 148
Query: 551 SAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD 730
+ TGK++SL+EQ LVDC++ N GC GGL AF+Y++ N G+ E++YPY G++
Sbjct: 149 GQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGLMDNAFQYVKDNGGLDTEESYPYLGRE 208
Query: 731 -DHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEV-TNDFLMYRKGIYSS 904
+ C ++P+ + A +I E+A+++AVA P+S A + + F Y+ GIY
Sbjct: 209 TNSCTYKPECSAANDTGFVDIPQR-EKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYD 267
Query: 905 TSCHKTPDKVNHAVLAVGYG----EENGIPYWIVKTHGVP 1012
C + ++H VL VGYG + N +WIVK P
Sbjct: 268 PDC--SSKDLDHGVLVVGYGFEGTDSNSSKFWIVKNSWGP 305
Score = 32.3 bits (72), Expect(2) = 4e-49
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 994 ENSWGPQWGMNGY 1032
+NSWGP+WG NGY
Sbjct: 300 KNSWGPEWGWNGY 312
>ref|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa].
Length = 331
Score = 185 bits (470), Expect(2) = 3e-47
Identities = 113/278 (40%), Positives = 150/278 (53%), Gaps = 11/278 (3%)
Frame = +2
Query: 197 HFKSWMVQHQKKYSL--EEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSF 358
H+ W + K+Y EE RL ++ N + + HN G H++ LG+N DM+
Sbjct: 27 HWDLWKKTYGKQYKEKNEEVARRL-IWEKNLKTVMLHNLEHSMGMHSYDLGMNHLGDMTS 85
Query: 359 DEIRHKYLWSEPQNCSATKGNYLRGTGP---YPPSMDWRKKGNFVSPVKNQGSCGSCWTF 529
+E+ L S + S N + P P SMDWR+KG V+ VK QGSCGSCW F
Sbjct: 86 EEVIS--LMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKG-CVTEVKYQGSCGSCWAF 142
Query: 530 STTGALESAVAIATGKMLSLAEQQLVDCA-QNFNNHGCQGGLPSQAFEYIRYNKGIMGED 706
S GALE+ V + TG+++SL+ Q LVDC+ + + N GC GG ++AF+YI N GI E
Sbjct: 143 SAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEA 202
Query: 707 TYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVT-NDFLMY 883
+YPYK D CK+ A + DE A+ EAVA PVS A + + F Y
Sbjct: 203 SYPYKAVDGKCKYDSKNRAATCSRYTELPFADEYALKEAVANKGPVSVAIDAKHSSFFFY 262
Query: 884 RKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
R G+Y SC VNH VL VGYG NG YW+VK
Sbjct: 263 RSGVYYDPSC---TQNVNHGVLVVGYGNLNGKDYWLVK 297
Score = 21.9 bits (45), Expect(2) = 3e-47
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIER 1047
+NSWG +G GY + R
Sbjct: 297 KNSWGLNFGDGGYIRMAR 314
>ref|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa].
Length = 331
Score = 185 bits (470), Expect(2) = 3e-47
Identities = 113/278 (40%), Positives = 150/278 (53%), Gaps = 11/278 (3%)
Frame = +2
Query: 197 HFKSWMVQHQKKYSL--EEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSF 358
H+ W + K+Y EE RL ++ N + + HN G H++ LG+N DM+
Sbjct: 27 HWDLWKKTYGKQYKEKNEEVARRL-IWEKNLKTVMLHNLEHSMGMHSYDLGMNHLGDMTS 85
Query: 359 DEIRHKYLWSEPQNCSATKGNYLRGTGP---YPPSMDWRKKGNFVSPVKNQGSCGSCWTF 529
+E+ L S + S N + P P SMDWR+KG V+ VK QGSCGSCW F
Sbjct: 86 EEVIS--LMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKG-CVTEVKYQGSCGSCWAF 142
Query: 530 STTGALESAVAIATGKMLSLAEQQLVDCA-QNFNNHGCQGGLPSQAFEYIRYNKGIMGED 706
S GALE+ V + TG+++SL+ Q LVDC+ + + N GC GG ++AF+YI N GI E
Sbjct: 143 SAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEA 202
Query: 707 TYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVT-NDFLMY 883
+YPYK D CK+ A + DE A+ EAVA PVS A + + F Y
Sbjct: 203 SYPYKAVDGKCKYDSKNRAATCSRYTELPFADEYALKEAVANKGPVSVAIDAKHSSFFFY 262
Query: 884 RKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
R G+Y SC VNH VL VGYG NG YW+VK
Sbjct: 263 RSGVYYDPSC---TQNVNHGVLVVGYGNLNGKDYWLVK 297
Score = 21.9 bits (45), Expect(2) = 3e-47
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIER 1047
+NSWG +G GY + R
Sbjct: 297 KNSWGLNFGDGGYIRMAR 314
>ref|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa].
Length = 490
Score = 155 bits (392), Expect(2) = 5e-41
Identities = 97/271 (35%), Positives = 142/271 (52%), Gaps = 5/271 (1%)
Frame = +2
Query: 200 FKSWMVQHQKKYSL-EEYHHRLQVFVSNW---RKINAHNAGNHTFKLGLNQFSDMSFDEI 367
FK ++ + + Y EE R+ VF +N +KI A + G T + G+ +FSD++ +E
Sbjct: 193 FKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTG--TARYGVTKFSDLTEEEF 250
Query: 368 RHKYLWSEPQNCSATKGNYLRGTGPYPP-SMDWRKKGNFVSPVKNQGSCGSCWTFSTTGA 544
R YL Q K + PP DWRKKG V+ VK+QG CGSCW FS TG
Sbjct: 251 RTIYLNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGA-VTKVKDQGMCGSCWAFSVTGN 309
Query: 545 LESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKG 724
+E + G +LSL+EQ+L+DC + + GC GGLPS A+ I+ G+ E+ Y Y+G
Sbjct: 310 VEGQWFLKQGTLLSLSEQELLDCDK--VDKGCMGGLPSNAYSAIKTLGGLETEEDYSYRG 367
Query: 725 QDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSS 904
C F +KA ++ D ++ N E+ + +A P+S A YR GI
Sbjct: 368 HLQTCSFNAEKAKVYINDSVELSQN-EQKLAAWLAEKGPISVAINAFG-MQFYRHGISHP 425
Query: 905 TSCHKTPDKVNHAVLAVGYGEENGIPYWIVK 997
+P ++HAVL VGYG + P+W +K
Sbjct: 426 LRPLCSPWLIDHAVLLVGYGNRSATPFWAIK 456
Score = 30.8 bits (68), Expect(2) = 5e-41
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERG 1050
+NSWG WG GY+ + RG
Sbjct: 456 KNSWGTDWGEEGYYYLYRG 474
>ref|XP_003122571.1| PREDICTED: cathepsin W-like [Sus scrofa].
Length = 367
Score = 114 bits (285), Expect(2) = 3e-30
Identities = 93/338 (27%), Positives = 149/338 (44%), Gaps = 27/338 (7%)
Frame = +2
Query: 80 VAATAEMWAVLSLLCAGAWLLGPPACGASNLAVSSFE-------KLHFKSWMVQHQKKYS 238
+A TA + +L L+ AG PA G + S K F + +Q+ + YS
Sbjct: 1 MALTAHLSCLLVLVVAG------PAQGLKDALRSQDPGPQPMGLKEVFTLFQIQYNRSYS 54
Query: 239 LEEYH-HRLQVFVSNWRK---INAHNAGNHTFKLGLNQFSDMSFDEIR--HKYLWSEPQN 400
H RL +F N K + + G T + G+ FSD++ +E H + W +
Sbjct: 55 NPAEHARRLDIFAQNLAKAQRLQEEDLG--TAEFGVTPFSDLTEEEFGQLHGHHWGAGKA 112
Query: 401 CS-ATKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGK 577
S K P S DWRKK +S +K+Q C CW + +E+ AI +
Sbjct: 113 PSMGIKVGSEESGETVPQSCDWRKKPGVISAIKHQKDCNCCWAMAAVDNVEAQWAIKYHQ 172
Query: 578 MLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKG--QDDHCKFQP 751
+ L+ QQ++DC + N GC GG AF + G+ E YPYKG + C +
Sbjct: 173 AVQLSVQQVLDCDRCGN--GCNGGFVWDAFLTVLNTSGLASEQDYPYKGTVKTHRCLAKQ 230
Query: 752 DKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDK 931
+ +A+++D + E+++ +A P++ Y++G+ +T P
Sbjct: 231 HRKVAWIQDFLMLQF-CEQSIARYLATEGPITVTIN-AGLLQQYKRGVIRATPATCDPHL 288
Query: 932 VNHAVLAVGYGEE-----------NGIPYWIVKTHGVP 1012
VNH+VL VG+G+ + IPYWI+K P
Sbjct: 289 VNHSVLLVGFGKSKSVEGRRPRPGHSIPYWILKNSWGP 326
Score = 36.2 bits (82), Expect(2) = 3e-30
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERG-KTC 1059
+NSWGP WG GYF + RG TC
Sbjct: 321 KNSWGPDWGEEGYFRLHRGSNTC 343
>ref|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus scrofa].
Length = 463
Score = 115 bits (287), Expect(2) = 1e-29
Identities = 92/298 (30%), Positives = 143/298 (47%), Gaps = 16/298 (5%)
Frame = +2
Query: 152 ACGASNLAVSSFEKLHFKS-WMVQHQKKYS--LEEYHHRLQVFVSNWRKINAHNAGNHTF 322
AC A ++FEK++ + + QKKYS L +Y+H ++ +K A
Sbjct: 135 ACFTGEKAGNTFEKVNVNTAHLKSRQKKYSNRLYKYNHDFVKAINGIQKSWTATAYMEYE 194
Query: 323 KLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNYLRGTGPYPPSMDWR--KKGNFVSPVK 496
L L + + + P+ T + P S DWR + NFV+PV+
Sbjct: 195 TLTLKEMTQRGGG---YNQRLPRPKPAPIT-AEIQEKSLHLPASWDWRNVRGTNFVTPVR 250
Query: 497 NQGSCGSCWTFSTTGALESAVAIATGKMLS--LAEQQLVDCAQNFNNHGCQGGLPSQAFE 670
NQ SCGSC++F++ G +E+ + I T + L+ Q++V C+Q GC GG P
Sbjct: 251 NQASCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSCSQ--YAQGCAGGFPYLIAG 308
Query: 671 YIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKD---VANITMNDEEAMVEAVALYN- 838
+ G++ E +PY G D C + + + V EA+++ +++
Sbjct: 309 KYAQDFGLVEEACFPYTGTDSPCTVKEGCFRYYSSEYHYVGGFYGGCNEALMKLELVHHG 368
Query: 839 PVSFAFEVTNDFLMYRKGIYSSTSCH---KTPDKVNHAVLAVGYGEE--NGIPYWIVK 997
P++ AFEV +DFL YRKGIY T + NHAVL VGYG + +G+ YWIVK
Sbjct: 369 PMAVAFEVYDDFLHYRKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDLASGMDYWIVK 426
Score = 33.5 bits (75), Expect(2) = 1e-29
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 994 ENSWGPQWGMNGYFLIERG 1050
+NSWG WG +GYF I RG
Sbjct: 426 KNSWGTSWGEDGYFRIRRG 444
>ref|NP_001090927.1| cathepsin B precursor [Sus scrofa].
Length = 335
Score = 84.0 bits (206), Expect(2) = 2e-19
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 36/207 (17%)
Frame = +2
Query: 482 VSPVKNQGSCGSCWTFSTTGALESAVAI-ATGKM-LSLAEQQLVDCAQNFNNHGCQGGLP 655
+ +++QGSCGSCW F A+ + I + G++ + ++ + ++ C + GC GG P
Sbjct: 96 IKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTCCGDECGDGCNGGFP 155
Query: 656 SQAFEYIRYNKGIMGEDTY-----------------------PYKGQDDHCKF----QPD 754
S A+ + KG++ Y P G+ D K +P
Sbjct: 156 SGAWNFWT-KKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPG 214
Query: 755 KAIAFVKDVA------NITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCH 916
++ +D +I+ N++E M E + PV AF V +DFL Y+ G+Y H
Sbjct: 215 YTPSYKEDKHFGCSSYSISRNEKEIMAE-IYKNGPVEGAFTVYSDFLQYKSGVYQ----H 269
Query: 917 KTPDKVN-HAVLAVGYGEENGIPYWIV 994
T D + HA+ +G+G ENG PYW+V
Sbjct: 270 VTGDLMGGHAIRILGWGVENGTPYWLV 296
Score = 30.0 bits (66), Expect(2) = 2e-19
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 997 NSWGPQWGMNGYFLIERGK 1053
NSW WG NG+F I RG+
Sbjct: 298 NSWNTDWGDNGFFKILRGQ 316
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,645,823
Number of extensions: 936314
Number of successful extensions: 3943
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3901
Number of HSP's successfully gapped: 31
Length of query: 364
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,854,232
Effective search space: 2337517248
Effective search space used: 2337517248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000808
(1094 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 365 3e-98
>Sscrofa_Chr07
|| Length = 134764511
Score = 365 bits (184), Expect = 3e-98
Identities = 187/188 (99%)
Strand = Plus / Minus
Query: 1 ctgtctccgcccctcccgccctcgcgaggcggcttttgacccgcaccgcggcggccctgc 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 53644262 ctgtctccgcccctcccgccctcgcgaggccgcttttgacccgcaccgcggcggccctgc 53644203
Query: 61 gagcctgtgtgctggccgagtcgccgccaccgccgagatgtgggccgtcctgtcgctgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53644202 gagcctgtgtgctggccgagtcgccgccaccgccgagatgtgggccgtcctgtcgctgct 53644143
Query: 121 ctgcgctggggcctggctcctcggtcccccagcctgcggcgcctccaacctggccgtgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53644142 ctgcgctggggcctggctcctcggtcccccagcctgcggcgcctccaacctggccgtgag 53644083
Query: 181 ctccttcg 188
||||||||
Sbjct: 53644082 ctccttcg 53644075
Score = 250 bits (126), Expect = 1e-63
Identities = 133/134 (99%), Gaps = 1/134 (0%)
Strand = Plus / Minus
Query: 899 tccagtacctcctgccataaaactccagataaagtcaaccacgcagtactggctgttggg 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53624905 tccagtacctcctgccataaaactccagataaagtcaaccacgcagtactggctgttggg 53624846
Query: 959 tacggagaagaaaatgggataccatattggattgtg-aaaactcatggggtccccagtgg 1017
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 53624845 tacggagaagaaaatgggataccatattggattgtgaaaaactcatggggtccccagtgg 53624786
Query: 1018 ggaatgaatgggta 1031
||||||||||||||
Sbjct: 53624785 ggaatgaatgggta 53624772
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 394 tcagaattgttcagccaccaaaggtaactacctgcggggtaccggtccctacccaccctc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53637284 tcagaattgttcagccaccaaaggtaactacctgcggggtaccggtccctacccaccctc 53637225
Query: 454 tatggactggcggaaaaaaggaaattttgtctcaccagtgaaaaatcagg 503
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53637224 tatggactggcggaaaaaaggaaattttgtctcaccagtgaaaaatcagg 53637175
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 796 gaatgacgaggaggcgatggtggaggcggtggccctgtacaaccctgtgagctttgcctt 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53626950 gaatgacgaggaggcgatggtggaggcggtggccctgtacaaccctgtgagctttgcctt 53626891
Query: 856 cgaggtgactaatgactttctcatgtacagaaagggcatctactccag 903
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53626890 cgaggtgactaatgactttctcatgtacagaaagggcatctactccag 53626843
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 219 agcaccaaaagaaatacagcttggaggagtaccaccaccggctgcaggtgtttgtcagca 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53639566 agcaccaaaagaaatacagcttggaggagtaccaccaccggctgcaggtgtttgtcagca 53639507
Query: 279 actggaggaagatcaatgcccacaacgctgggaaccacacatttaaac 326
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53639506 actggaggaagatcaatgcccacaacgctgggaaccacacatttaaac 53639459
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 501 agggcagctgcggcagttgctggaccttctctaccacaggggccttggagtctgctgttg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53634274 agggcagctgcggcagttgctggaccttctctaccacaggggccttggagtctgctgttg 53634215
Query: 561 ccatcgcaactgggaagatgctgtccttgg 590
||||||||||||||||||||||||||||||
Sbjct: 53634214 ccatcgcaactgggaagatgctgtccttgg 53634185
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 645 ggggtctccccagccaggccttcgagtacatccgctacaacaagggcatcatgggtgaag 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53631634 ggggtctccccagccaggccttcgagtacatccgctacaacaagggcatcatgggtgaag 53631575
Query: 705 acacctacccgtacaagggccagg 728
||||||||||||||||||||||||
Sbjct: 53631574 acacctacccgtacaagggccagg 53631551
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 725 caggatgatcactgcaagttccagcccgataaggccattgcttttgtcaaggatgtagcc 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53630318 caggatgatcactgcaagttccagcccgataaggccattgcttttgtcaaggatgtagcc 53630259
Query: 785 aacatcacaatg 796
||||||||||||
Sbjct: 53630258 aacatcacaatg 53630247
Score = 133 bits (67), Expect = 2e-28
Identities = 70/71 (98%)
Strand = Plus / Minus
Query: 327 tgggactgaaccaattttcagacatgagctttgatgaaataagacacaagtatctttggt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53637920 tgggactgaaccaattttcagacatgagctttgatgaaataagacacaagtatctttggt 53637861
Query: 387 cagagcctcag 397
|||| ||||||
Sbjct: 53637860 cagaacctcag 53637850
Score = 119 bits (60), Expect = 3e-24
Identities = 67/68 (98%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 1028 ggtacttcctcatcgagcgtggaaaga-catgtgcggcctggccgcctgcgcctcctacc 1086
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 53623458 ggtacttcctcatcgagcgtggaaagaacatgtgcggcctggccgcctgcgcctcctacc 53623399
Query: 1087 cgatcccc 1094
||||||||
Sbjct: 53623398 cgatcccc 53623391
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 589 ggcagaacagcagctggtggactgcgcccagaacttcaacaatcacggctgccaaggg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53633362 ggcagaacagcagctggtggactgcgcccagaacttcaacaatcacggctgccaaggg 53633305
Score = 65.9 bits (33), Expect = 4e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 188 gagaagttgcactttaagtcctggatggtgcag 220
|||||||||||||||||||||||||||||||||
Sbjct: 53640224 gagaagttgcactttaagtcctggatggtgcag 53640192
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,561,950
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 12
Length of query: 1094
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1073
Effective length of database: 2,808,413,156
Effective search space: 3013427316388
Effective search space used: 3013427316388
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)