Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000815
(907 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030222.1| vitronectin [Bos taurus]. 101 5e-52
Alignment gi|NP_001193562.1| proteoglycan 4 [Bos taurus]. 49 8e-06
>ref|NP_001030222.1| vitronectin [Bos taurus].
Length = 476
Score = 101 bits (251), Expect(3) = 5e-52
Identities = 60/112 (53%), Positives = 71/112 (63%), Gaps = 19/112 (16%)
Frame = +2
Query: 461 VTRGDVFLQPDDEYRAYDYHEETRHNTSVQEEQR----IPVLLAKTEETPV----LKPEE 616
VTRGDVF P+DEY +DY + N++V+ + PVL A+T ETPV L PE+
Sbjct: 62 VTRGDVFHLPEDEYGFHDYSDAQTVNSNVEAQPESTTLAPVLQAQTLETPVQAPVLNPEK 121
Query: 617 EAPP-------PGPQTDDLGVSE----EELCSGKPFDAFTNLKNGSVFAFRG 739
E PP PG T DLG SE EE CSGKPFDAFT+LKNGS+FAFRG
Sbjct: 122 EVPPSGRGDSEPGMGTSDLGTSESPAEEETCSGKPFDAFTDLKNGSLFAFRG 173
Score = 85.1 bits (209), Expect(3) = 5e-52
Identities = 34/40 (85%), Positives = 37/40 (92%)
Frame = +1
Query: 265 ESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQ 384
ESCKGRCT+GF A RKCQCDELCSYYQSCC D++AECKPQ
Sbjct: 22 ESCKGRCTEGFNATRKCQCDELCSYYQSCCADFMAECKPQ 61
Score = 58.2 bits (139), Expect(3) = 5e-52
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +3
Query: 813 GLYCYELDEKAVRPGYPKLIQDVWG 887
GLYCYELDEKAVRPGYPKLI+DVWG
Sbjct: 173 GLYCYELDEKAVRPGYPKLIRDVWG 197
>ref|NP_001193562.1| proteoglycan 4 [Bos taurus].
Length = 1195
Score = 48.5 bits (114), Expect = 8e-06
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 241 QLSYSLSTESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQGAFRG 399
Q + S SC GRC +G+ + C CD C +Y CC D+ EC + + +G
Sbjct: 19 QQASSQDLSSCAGRCGEGYSRDAICNCDYNCQHYTECCPDFKKECTVELSCKG 71
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,947,300
Number of extensions: 1367205
Number of successful extensions: 8352
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8242
Number of HSP's successfully gapped: 4
Length of query: 302
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 200
Effective length of database: 14,306,398
Effective search space: 2861279600
Effective search space used: 2861279600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000815
(907 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854040.1| PREDICTED: similar to Vitronectin precursor (Se... 98 2e-51
Alignment gi|XP_868139.1| PREDICTED: similar to Vitronectin precursor (Se... 98 2e-51
Alignment gi|XP_537741.1| PREDICTED: similar to Vitronectin precursor (Se... 98 2e-51
>ref|XP_854040.1| PREDICTED: similar to Vitronectin precursor (Serum spreading
factor) (S-protein) (V75) isoform 2 [Canis familiaris].
Length = 470
Score = 97.8 bits (242), Expect(3) = 2e-51
Identities = 58/111 (52%), Positives = 69/111 (62%), Gaps = 16/111 (14%)
Frame = +2
Query: 461 VTRGDVFLQPDDEYRAYDYHEETRHN---TSVQEEQRIPVLLAKTE----ETPVLKPEEE 619
VTRGDVF P+DEY D HE TR T ++ P L A++E + P+L PEEE
Sbjct: 62 VTRGDVFALPEDEYGVIDDHEGTREQSVLTQLESTTLSPGLQAQSEKFPAQVPILIPEEE 121
Query: 620 APPPGPQT-------DDLGVS--EEELCSGKPFDAFTNLKNGSVFAFRGDW 745
AP PG T D+ S EEELCSGKPFDAFT+LKNGS+FAFRG +
Sbjct: 122 APGPGQGTLVLEAPDQDISESAAEEELCSGKPFDAFTDLKNGSLFAFRGQY 172
Score = 88.6 bits (218), Expect(3) = 2e-51
Identities = 36/40 (90%), Positives = 38/40 (95%)
Frame = +1
Query: 265 ESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQ 384
ESCKGRCT+GF A+RKCQCDELCSYYQSCC DYVAECKPQ
Sbjct: 22 ESCKGRCTEGFNADRKCQCDELCSYYQSCCEDYVAECKPQ 61
Score = 55.8 bits (133), Expect(3) = 2e-51
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 813 GLYCYELDEKAVRPGYPKLIQDVWG 887
G YCYELDEKAVRPGYPKLI+DVWG
Sbjct: 170 GQYCYELDEKAVRPGYPKLIRDVWG 194
>ref|XP_868139.1| PREDICTED: similar to Vitronectin precursor (Serum spreading
factor) (S-protein) (V75) isoform 3 [Canis familiaris].
Length = 459
Score = 97.8 bits (242), Expect(3) = 2e-51
Identities = 58/111 (52%), Positives = 69/111 (62%), Gaps = 16/111 (14%)
Frame = +2
Query: 461 VTRGDVFLQPDDEYRAYDYHEETRHN---TSVQEEQRIPVLLAKTE----ETPVLKPEEE 619
VTRGDVF P+DEY D HE TR T ++ P L A++E + P+L PEEE
Sbjct: 62 VTRGDVFALPEDEYGVIDDHEGTREQSVLTQLESTTLSPGLQAQSEKFPAQVPILIPEEE 121
Query: 620 APPPGPQT-------DDLGVS--EEELCSGKPFDAFTNLKNGSVFAFRGDW 745
AP PG T D+ S EEELCSGKPFDAFT+LKNGS+FAFRG +
Sbjct: 122 APGPGQGTLVLEAPDQDISESAAEEELCSGKPFDAFTDLKNGSLFAFRGQY 172
Score = 88.6 bits (218), Expect(3) = 2e-51
Identities = 36/40 (90%), Positives = 38/40 (95%)
Frame = +1
Query: 265 ESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQ 384
ESCKGRCT+GF A+RKCQCDELCSYYQSCC DYVAECKPQ
Sbjct: 22 ESCKGRCTEGFNADRKCQCDELCSYYQSCCEDYVAECKPQ 61
Score = 55.8 bits (133), Expect(3) = 2e-51
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 813 GLYCYELDEKAVRPGYPKLIQDVWG 887
G YCYELDEKAVRPGYPKLI+DVWG
Sbjct: 170 GQYCYELDEKAVRPGYPKLIRDVWG 194
>ref|XP_537741.1| PREDICTED: similar to Vitronectin precursor (Serum spreading
factor) (S-protein) (V75) isoform 1 [Canis familiaris].
Length = 458
Score = 97.8 bits (242), Expect(3) = 2e-51
Identities = 58/111 (52%), Positives = 69/111 (62%), Gaps = 16/111 (14%)
Frame = +2
Query: 461 VTRGDVFLQPDDEYRAYDYHEETRHN---TSVQEEQRIPVLLAKTE----ETPVLKPEEE 619
VTRGDVF P+DEY D HE TR T ++ P L A++E + P+L PEEE
Sbjct: 62 VTRGDVFALPEDEYGVIDDHEGTREQSVLTQLESTTLSPGLQAQSEKFPAQVPILIPEEE 121
Query: 620 APPPGPQT-------DDLGVS--EEELCSGKPFDAFTNLKNGSVFAFRGDW 745
AP PG T D+ S EEELCSGKPFDAFT+LKNGS+FAFRG +
Sbjct: 122 APGPGQGTLVLEAPDQDISESAAEEELCSGKPFDAFTDLKNGSLFAFRGQY 172
Score = 88.6 bits (218), Expect(3) = 2e-51
Identities = 36/40 (90%), Positives = 38/40 (95%)
Frame = +1
Query: 265 ESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQ 384
ESCKGRCT+GF A+RKCQCDELCSYYQSCC DYVAECKPQ
Sbjct: 22 ESCKGRCTEGFNADRKCQCDELCSYYQSCCEDYVAECKPQ 61
Score = 55.8 bits (133), Expect(3) = 2e-51
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 813 GLYCYELDEKAVRPGYPKLIQDVWG 887
G YCYELDEKAVRPGYPKLI+DVWG
Sbjct: 170 GQYCYELDEKAVRPGYPKLIRDVWG 194
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,710,093
Number of extensions: 1406434
Number of successful extensions: 8653
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8556
Number of HSP's successfully gapped: 9
Length of query: 302
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 200
Effective length of database: 15,474,232
Effective search space: 3094846400
Effective search space used: 3094846400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000815
(907 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000629.3| vitronectin precursor [Homo sapiens]. 99 5e-51
Alignment gi|NP_001121182.1| proteoglycan 4 isoform D [Homo sapiens]. 49 8e-06
Alignment gi|NP_001121181.1| proteoglycan 4 isoform C [Homo sapiens]. 49 8e-06
Alignment gi|NP_001121180.1| proteoglycan 4 isoform B [Homo sapiens]. 49 8e-06
Alignment gi|NP_005798.2| proteoglycan 4 isoform A [Homo sapiens]. 49 8e-06
>ref|NP_000629.3| vitronectin precursor [Homo sapiens].
Length = 478
Score = 98.6 bits (244), Expect(3) = 5e-51
Identities = 60/119 (50%), Positives = 72/119 (60%), Gaps = 24/119 (20%)
Frame = +2
Query: 461 VTRGDVFLQPDDEYRAYDYHEETRHNTSVQEEQRIPVLLA--------KTEETPVLKPEE 616
VTRGDVF P+DEY YD EE ++N +V E+ P L + E+TPVLKPEE
Sbjct: 62 VTRGDVFTMPEDEYTVYDDGEE-KNNATVHEQVGGPSLTSDLQAQSKGNPEQTPVLKPEE 120
Query: 617 EAPPPG------------PQTDDLG----VSEEELCSGKPFDAFTNLKNGSVFAFRGDW 745
EAP P P+T G +EEELCSGKPFDAFT+LKNGS+FAFRG +
Sbjct: 121 EAPAPEVGASKPEGIDSRPETLHPGRPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQY 179
Score = 86.7 bits (213), Expect(3) = 5e-51
Identities = 34/40 (85%), Positives = 37/40 (92%)
Frame = +1
Query: 265 ESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQ 384
ESCKGRCT+GF ++KCQCDELCSYYQSCCTDY AECKPQ
Sbjct: 22 ESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQ 61
Score = 55.8 bits (133), Expect(3) = 5e-51
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 813 GLYCYELDEKAVRPGYPKLIQDVWG 887
G YCYELDEKAVRPGYPKLI+DVWG
Sbjct: 177 GQYCYELDEKAVRPGYPKLIRDVWG 201
>ref|NP_001121182.1| proteoglycan 4 isoform D [Homo sapiens].
Length = 1270
Score = 48.5 bits (114), Expect = 8e-06
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +1
Query: 268 SCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAEC 375
SCKGRC + F R+C CD C Y CC DY + C
Sbjct: 28 SCKGRCFESFERGRECDCDAQCKKYDKCCPDYESFC 63
>ref|NP_001121181.1| proteoglycan 4 isoform C [Homo sapiens].
Length = 1311
Score = 48.5 bits (114), Expect = 8e-06
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +1
Query: 268 SCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAEC 375
SCKGRC + F R+C CD C Y CC DY + C
Sbjct: 69 SCKGRCFESFERGRECDCDAQCKKYDKCCPDYESFC 104
>ref|NP_001121180.1| proteoglycan 4 isoform B [Homo sapiens].
Length = 1363
Score = 48.5 bits (114), Expect = 8e-06
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +1
Query: 268 SCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAEC 375
SCKGRC + F R+C CD C Y CC DY + C
Sbjct: 28 SCKGRCFESFERGRECDCDAQCKKYDKCCPDYESFC 63
>ref|NP_005798.2| proteoglycan 4 isoform A [Homo sapiens].
Length = 1404
Score = 48.5 bits (114), Expect = 8e-06
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +1
Query: 268 SCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAEC 375
SCKGRC + F R+C CD C Y CC DY + C
Sbjct: 69 SCKGRCFESFERGRECDCDAQCKKYDKCCPDYESFC 104
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,858,897
Number of extensions: 1378694
Number of successful extensions: 8251
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8176
Number of HSP's successfully gapped: 7
Length of query: 302
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 200
Effective length of database: 14,934,836
Effective search space: 2986967200
Effective search space used: 2986967200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000815
(907 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035837.1| vitronectin precursor [Mus musculus]. 92 3e-48
Alignment gi|NP_001103616.1| proteoglycan 4 isoform 2 [Mus musculus]. 50 3e-06
Alignment gi|NP_067375.3| proteoglycan 4 isoform 1 [Mus musculus]. 50 3e-06
>ref|NP_035837.1| vitronectin precursor [Mus musculus].
Length = 478
Score = 92.0 bits (227), Expect(3) = 3e-48
Identities = 57/117 (48%), Positives = 70/117 (59%), Gaps = 22/117 (18%)
Frame = +2
Query: 461 VTRGDVFLQPDDEYRAYDYHEETRHNTS--VQEEQRIPV--LLAKTE----ETPVLKPEE 616
VTRGDVF P+D+Y +YDY EE ++NT+ VQ E P L +T+ T L PEE
Sbjct: 62 VTRGDVFTMPEDDYWSYDYVEEPKNNTNTGVQPENTSPPGDLNPRTDGTLKPTAFLDPEE 121
Query: 617 EAPPPGPQ-----------TDDLGVSE---EELCSGKPFDAFTNLKNGSVFAFRGDW 745
+ P P+ T D G E EELCSGKPFDAFT+LKNGS+FAFRG +
Sbjct: 122 QPSTPAPKVEQQEEILRPDTTDQGTPEFPEEELCSGKPFDAFTDLKNGSLFAFRGQY 178
Score = 84.3 bits (207), Expect(3) = 3e-48
Identities = 36/60 (60%), Positives = 42/60 (70%)
Frame = +1
Query: 205 VGWVSVAWPGRCQLSYSLSTESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQ 384
V WVS+A ESCKGRCT GF+A +KCQCDELC+YYQSCC DY+ +CKPQ
Sbjct: 13 VAWVSLA-----------DQESCKGRCTQGFMASKKCQCDELCTYYQSCCADYMEQCKPQ 61
Score = 55.1 bits (131), Expect(3) = 3e-48
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +3
Query: 813 GLYCYELDEKAVRPGYPKLIQDVWG 887
G YCYELDE AVRPGYPKLIQDVWG
Sbjct: 176 GQYCYELDETAVRPGYPKLIQDVWG 200
>ref|NP_001103616.1| proteoglycan 4 isoform 2 [Mus musculus].
Length = 423
Score = 49.7 bits (117), Expect = 3e-06
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +1
Query: 268 SCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECK 378
SCKGRC + F R+C CD C Y CC DY + C+
Sbjct: 69 SCKGRCFESFARGRECDCDSQCKQYGKCCADYDSFCE 105
>ref|NP_067375.3| proteoglycan 4 isoform 1 [Mus musculus].
Length = 1221
Score = 49.7 bits (117), Expect = 3e-06
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +1
Query: 268 SCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECK 378
SCKGRC + F R+C CD C Y CC DY + C+
Sbjct: 69 SCKGRCFESFARGRECDCDSQCKQYGKCCADYDSFCE 105
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,179,484
Number of extensions: 1142713
Number of successful extensions: 6330
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6268
Number of HSP's successfully gapped: 5
Length of query: 302
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 201
Effective length of database: 12,583,923
Effective search space: 2529368523
Effective search space used: 2529368523
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000815
(907 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999269.1| vitronectin precursor [Sus scrofa]. 193 2e-83
>ref|NP_999269.1| vitronectin precursor [Sus scrofa].
Length = 459
Score = 193 bits (491), Expect(3) = 2e-83
Identities = 92/93 (98%), Positives = 92/93 (98%)
Frame = +2
Query: 461 VTRGDVFLQPDDEYRAYDYHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQ 640
VTRGDVFLQPDDEYRAYDYHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQ
Sbjct: 62 VTRGDVFLQPDDEYRAYDYHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQ 121
Query: 641 TDDLGVSEEELCSGKPFDAFTNLKNGSVFAFRG 739
TDDLGV EEELCSGKPFDAFTNLKNGSVFAFRG
Sbjct: 122 TDDLGVPEEELCSGKPFDAFTNLKNGSVFAFRG 154
Score = 96.3 bits (238), Expect(3) = 2e-83
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 265 ESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQ 384
ESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQ
Sbjct: 22 ESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQ 61
Score = 59.7 bits (143), Expect(3) = 2e-83
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +3
Query: 813 GLYCYELDEKAVRPGYPKLIQDVWG 887
GLYCYELDEKAVRPGYPKLIQDVWG
Sbjct: 154 GLYCYELDEKAVRPGYPKLIQDVWG 178
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,479,522
Number of extensions: 882666
Number of successful extensions: 5685
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5624
Number of HSP's successfully gapped: 3
Length of query: 302
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,904,026
Effective search space: 1816421304
Effective search space used: 1816421304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000815
(907 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 1752 0.0
Sscrofa_Chr12 1713 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 1752 bits (884), Expect = 0.0
Identities = 902/907 (99%), Gaps = 2/907 (0%)
Strand = Plus / Minus
Query: 1 ctcctcttctctggttccctcatccatgacctctcatctctctgtcccttcctcaggcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8455 ctcctcttctctggttccctcatccatgacctctcatctctctgtcccttcctcaggcat 8396
Query: 61 cagaacctagtttaccaggcgtgaggccggaggtgctgccatggcacccctgaggcccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8395 cagaacctagtttaccaggcgtgaggccggaggtgctgccatggcacccctgaggcccct 8336
Query: 121 tctgatgctggccctgctggcatgggttgctctggctgaccaaggtgcgggaggatatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8335 tctgatgctggccctgctggcatgggttgctctggctgaccaaggtgcgggaggatatgg 8276
Query: 181 atattggtgaccatttgggtcaatgtagggtgggtaagtgtggcctggcctgggcggtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8275 atattggtgaccatttgggtcaatgtagggtgggtaagtgtggcctggcctgggcggtgc 8216
Query: 241 cagctgtcatactccctctccacagagtcgtgcaagggccgctgcacagacggcttcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8215 cagctgtcatactccctctccacagagtcgtgcaagggccgctgcacagacggcttcatt 8156
Query: 301 gccgaaaggaagtgtcagtgtgacgagctgtgctcttactaccagagctgctgcactgac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 8155 gccgaaaggaagtgtcagtgtgacgagctgtgctcttactaccagagctgctgcgccgac 8096
Query: 361 tacgtggccgagtgcaagccccaaggtgcgttcagaggggctgggcgggcctggggtccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8095 tacgtggccgagtgcaagccccaaggtgcgttcagaggggctgggcgggcctggggtccc 8036
Query: 421 ctctgcagctggagactcaccacccccctctttgtctgcagtgactcgcggggatgtatt 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8035 ctctgcagctggagactcaccacccccctccttgtctgcagtgactcgcggggatgtatt 7976
Query: 481 ccttcagccagatgatgagtacagggcctatgactaccacgaggagaccagacacaacac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7975 ccttcagccagatgatgagtacagggcctatgactaccacgaggagaccagacacaacac 7916
Query: 541 cagcgtccaagaagagcagaggatccctgtcctgctggccaagactgaagagactccggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7915 cagcgtccaagaagagcagaggatccctgtcctgctggccaagactgaagagactccggt 7856
Query: 601 tctgaaacctgaggaagaggccccaccacctgggcctcagactgatgatctaggggtctc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7855 tctgaaacctgaggaagaggccccaccacctgggcctcagactgatgatctaggggtctc 7796
Query: 661 tgaggaagagctgtgcagtgggaaaccctttgatgccttcaccaacctcaagaacggttc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7795 tgaggaagagctgtgcagtgggaaaccctttgatgccttcaccaacctcaagaacggttc 7736
Query: 721 cgtctttgccttccgaggtgactggaatggcagaccttgggactagggtctgccgcagga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7735 cgtctttgccttccgaggtgactggaatggcagaccttgggactagggtctgccgcagga 7676
Query: 781 gcatcctgcctcacacggcctcccttcctctagggctgtactgctatgagctggatgaaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7675 gcatcctgcctcacacggcctcccttcctctagggctgtactgctatgagctggatgaaa 7616
Query: 841 aggcagtgaggcctgggtaccccaagctcatccaagatgtctggggggcatcaagggccc 900
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7615 aggcagtgaggcctgggtaccccaagctcatccaagatgtct--ggggcatcaagggccc 7558
Query: 901 cattgat 907
|||||||
Sbjct: 7557 cattgat 7551
>Sscrofa_Chr12
|| Length = 63588571
Score = 1713 bits (864), Expect = 0.0
Identities = 898/907 (99%), Gaps = 3/907 (0%)
Strand = Plus / Minus
Query: 1 ctcctcttctctggttccctcatccatgacctctcatctctctgtcccttcctcaggcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601947 ctcctcttctctggttccctcatccatgacctctcatctctctgtcccttcctcaggcat 46601888
Query: 61 cagaacctagtttaccaggcgtgaggccggaggtgctgccatggcacccctgaggcccct 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601887 cagaacctagtttaccagacgtgaggccggaggtgctgccatggcacccctgaggcccct 46601828
Query: 121 tctgatgctggccctgctggcatgggttgctctggctgaccaaggtgcgggaggatatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601827 tctgatgctggccctgctggcatgggttgctctggctgaccaaggtgcgggaggatatgg 46601768
Query: 181 atattggtgaccatttgggtcaatgtagggtgggtaagtgtggcctggcctgggcggtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601767 atattggtgaccatttgggtcaatgtagggtgggtaagtgtggcctggcctgggcggtgc 46601708
Query: 241 cagctgtcatactccctctccacagagtcgtgcaagggccgctgcacagacggcttcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601707 cagctgtcatactccctctccacagagtcgtgcaagggccgctgcacagacggcttcatt 46601648
Query: 301 gccgaaaggaagtgtcagtgtgacgagctgtgctcttactaccagagctgctgcactgac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 46601647 gccgaaaggaagtgtcagtgtgacgagctgtgctcttactaccagagctgctgcgctgac 46601588
Query: 361 tacgtggccgagtgcaagccccaaggtgcgttcagaggggctgggcgggcctggggtccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601587 tacgtggccgagtgcaagccccaaggtgcgttcagaggggctgggcgggcctggggtccc 46601528
Query: 421 ctctgcagctggagactcaccacccccctctttgtctgcagtgactcgcggggatgtatt 480
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 46601527 ctctgcagctggagactcaccacccccctccttgtctgcagtgactcgcggggatgta-t 46601469
Query: 481 ccttcagccagatgatgagtacagggcctatgactaccacgaggagaccagacacaacac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601468 ccttcagccagatgatgagtacagggcctatgactaccacgaggagaccagacacaacac 46601409
Query: 541 cagcgtccaagaagagcagaggatccctgtcctgctggccaagactgaagagactccggt 600
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601408 cagcgtccaagaagagccaaggatccctgtcctgctggccaagactgaagagactccggt 46601349
Query: 601 tctgaaacctgaggaagaggccccaccacctgggcctcagactgatgatctaggggtctc 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 46601348 tctgaaacctgaggaagaggccccaccacctgggcctcagactgatgatctaggggtccc 46601289
Query: 661 tgaggaagagctgtgcagtgggaaaccctttgatgccttcaccaacctcaagaacggttc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601288 tgaggaagagctgtgcagtgggaaaccctttgatgccttcaccaacctcaagaacggttc 46601229
Query: 721 cgtctttgccttccgaggtgactggaatggcagaccttgggactagggtctgccgcagga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601228 cgtctttgccttccgaggtgactggaatggcagaccttgggactagggtctgccgcagga 46601169
Query: 781 gcatcctgcctcacacggcctcccttcctctagggctgtactgctatgagctggatgaaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601168 gcatcctgcctcacacggcctcccttcctctagggctgtactgctatgagctggatgaaa 46601109
Query: 841 aggcagtgaggcctgggtaccccaagctcatccaagatgtctggggggcatcaagggccc 900
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 46601108 aggcagtgaggcctgggtaccccaagctcatccaagatgtct--ggggcatcaagggccc 46601051
Query: 901 cattgat 907
|||||||
Sbjct: 46601050 cattgat 46601044
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,266,218
Number of extensions: 208
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 2
Length of query: 907
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 886
Effective length of database: 2,808,413,156
Effective search space: 2488254056216
Effective search space used: 2488254056216
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)