Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000826
(1260 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094637.1| cell differentiation protein RCD1 homolog [B... 516 e-146
>ref|NP_001094637.1| cell differentiation protein RCD1 homolog [Bos taurus].
Length = 299
Score = 516 bits (1329), Expect = e-146
Identities = 263/280 (93%), Positives = 263/280 (93%)
Frame = +3
Query: 420 MHSXXXXXXXXXXXXXXDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF 599
MHS DREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
Sbjct: 1 MHSLATAAPVPTALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF 60
Query: 600 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY 779
GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
Sbjct: 61 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY 120
Query: 780 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT 959
PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
Sbjct: 121 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT 180
Query: 960 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKRVLQLSKEPSARLLKHVVRCYLRLS 1139
VATFILQKILLDDTGLAYICQTYERFSHVAMILGK VLQLSKEPSARLLKHVVRCYLRLS
Sbjct: 181 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS 240
Query: 1140 DNPRAREALRQCLPDQLKDTNFAQVLKDDTTTKRWAAQLV 1259
DNPRAREALRQCLPDQLKDT FAQVLKDDTTTKRW AQLV
Sbjct: 241 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLV 280
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,137,440
Number of extensions: 1251896
Number of successful extensions: 4202
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4193
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 315
Effective length of database: 14,207,134
Effective search space: 4475247210
Effective search space used: 4475247210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000826
(1260 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853052.1| PREDICTED: similar to rcd1 (required for cell d... 581 e-166
>ref|XP_853052.1| PREDICTED: similar to rcd1 (required for cell differentiation)
homolog 1 (S. pombe) (predicted) [Canis familiaris].
Length = 437
Score = 581 bits (1497), Expect = e-166
Identities = 311/417 (74%), Positives = 318/417 (76%)
Frame = +3
Query: 9 RVSPVGHAHYLSPPDCRVFPALYWPLEEAQSSRPSMGIPAPSRGMRGLVXXXXXXXXXXX 188
+ SPVGHAHY+S R+FP + P GIPA S+ +RGLV
Sbjct: 43 KTSPVGHAHYVSSETVRLFPPFPGLRRRVRVHAPVWGIPAQSQRLRGLVIGP-------- 94
Query: 189 XTKDKL*DC*LFGELXXXXXXXXXXXXXXXXXLRRGRSEPEADGGCGGSSSLAAEALKLX 368
RRGRSEPEADGGCGGSSSLAAE+LK
Sbjct: 95 ---------------------------------RRGRSEPEADGGCGGSSSLAAESLKRG 121
Query: 369 XXXXXXXXXXXXXXXPNMHSXXXXXXXXXXXXXXDREKIYQWINELSSPETRENALLELS 548
PNMHS DREKIYQWINELSSPETRENALLELS
Sbjct: 122 RGCGASGSGRRAAAAPNMHSLATAAPVPTALAQVDREKIYQWINELSSPETRENALLELS 181
Query: 549 KKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH 728
KKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH
Sbjct: 182 KKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH 241
Query: 729 PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEI 908
PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEI
Sbjct: 242 PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEI 301
Query: 909 IPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKRVLQLSKE 1088
IPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGK VLQLSKE
Sbjct: 302 IPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKE 361
Query: 1089 PSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTNFAQVLKDDTTTKRWAAQLV 1259
PSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDT FAQVLKDDTTTKRW AQLV
Sbjct: 362 PSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLV 418
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,996,256
Number of extensions: 1283662
Number of successful extensions: 4290
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4282
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 315
Effective length of database: 15,374,224
Effective search space: 4842880560
Effective search space used: 4842880560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000826
(1260 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005435.1| cell differentiation protein RCD1 homolog [Homo... 516 e-146
>ref|NP_005435.1| cell differentiation protein RCD1 homolog [Homo sapiens].
Length = 299
Score = 516 bits (1329), Expect = e-146
Identities = 263/280 (93%), Positives = 263/280 (93%)
Frame = +3
Query: 420 MHSXXXXXXXXXXXXXXDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF 599
MHS DREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
Sbjct: 1 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF 60
Query: 600 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY 779
GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
Sbjct: 61 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY 120
Query: 780 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT 959
PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
Sbjct: 121 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT 180
Query: 960 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKRVLQLSKEPSARLLKHVVRCYLRLS 1139
VATFILQKILLDDTGLAYICQTYERFSHVAMILGK VLQLSKEPSARLLKHVVRCYLRLS
Sbjct: 181 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS 240
Query: 1140 DNPRAREALRQCLPDQLKDTNFAQVLKDDTTTKRWAAQLV 1259
DNPRAREALRQCLPDQLKDT FAQVLKDDTTTKRW AQLV
Sbjct: 241 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLV 280
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,094,897
Number of extensions: 1264132
Number of successful extensions: 3969
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3967
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 315
Effective length of database: 14,835,944
Effective search space: 4673322360
Effective search space used: 4673322360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000826
(1260 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067358.1| cell differentiation protein RCD1 homolog [Mus ... 516 e-146
>ref|NP_067358.1| cell differentiation protein RCD1 homolog [Mus musculus].
Length = 299
Score = 516 bits (1329), Expect = e-146
Identities = 263/280 (93%), Positives = 263/280 (93%)
Frame = +3
Query: 420 MHSXXXXXXXXXXXXXXDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF 599
MHS DREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
Sbjct: 1 MHSLATAAPVPTALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF 60
Query: 600 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY 779
GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
Sbjct: 61 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY 120
Query: 780 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT 959
PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
Sbjct: 121 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT 180
Query: 960 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKRVLQLSKEPSARLLKHVVRCYLRLS 1139
VATFILQKILLDDTGLAYICQTYERFSHVAMILGK VLQLSKEPSARLLKHVVRCYLRLS
Sbjct: 181 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS 240
Query: 1140 DNPRAREALRQCLPDQLKDTNFAQVLKDDTTTKRWAAQLV 1259
DNPRAREALRQCLPDQLKDT FAQVLKDDTTTKRW AQLV
Sbjct: 241 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLV 280
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,959,360
Number of extensions: 1072528
Number of successful extensions: 3466
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3463
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 316
Effective length of database: 12,493,815
Effective search space: 3948045540
Effective search space used: 3948045540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000826
(1260 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925255.2| PREDICTED: cell differentiation protein RCD1... 516 e-146
>ref|XP_001925255.2| PREDICTED: cell differentiation protein RCD1 homolog [Sus scrofa].
Length = 299
Score = 516 bits (1329), Expect = e-146
Identities = 263/280 (93%), Positives = 263/280 (93%)
Frame = +3
Query: 420 MHSXXXXXXXXXXXXXXDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF 599
MHS DREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
Sbjct: 1 MHSLATAAPVPTALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF 60
Query: 600 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY 779
GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
Sbjct: 61 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY 120
Query: 780 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT 959
PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
Sbjct: 121 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT 180
Query: 960 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKRVLQLSKEPSARLLKHVVRCYLRLS 1139
VATFILQKILLDDTGLAYICQTYERFSHVAMILGK VLQLSKEPSARLLKHVVRCYLRLS
Sbjct: 181 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS 240
Query: 1140 DNPRAREALRQCLPDQLKDTNFAQVLKDDTTTKRWAAQLV 1259
DNPRAREALRQCLPDQLKDT FAQVLKDDTTTKRW AQLV
Sbjct: 241 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLV 280
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,374,694
Number of extensions: 805265
Number of successful extensions: 2798
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2794
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 318
Effective length of database: 8,804,438
Effective search space: 2799811284
Effective search space used: 2799811284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000826
(1260 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 827 0.0
>Sscrofa_Chr15
|| Length = 157681621
Score = 827 bits (417), Expect = 0.0
Identities = 439/444 (98%), Gaps = 2/444 (0%)
Strand = Plus / Plus
Query: 1 tttccctccgcgtcagccctgttgggcatgcgcactacttgtcccctccagactgccggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133604824 tttccctccgcgtcagccctgttgggcatgcgcactacttgtcccctccagactgccggg 133604883
Query: 61 tttttcccgccctttactggcctctggaggaggctcagagttcacgcccctctatgggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133604884 tttttcccgccctttactggcctctggaggaggctcagagttcacgcccctctatgggga 133604943
Query: 121 tacctgctccgagccgggggatgcgaggactagtaggtggcagacgtccttctggtcctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133604944 tacctgctccgagccgggggatgcgaggactagtaggtggcagacgtccttctggtcctg 133605003
Query: 181 aatcttaagggacaaaggataaactctaggactgttaactctttggagagctgagaggcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133605004 aatcttaagggacaaaggataaactctaggactgttaactctttggagagctgagaggcg 133605063
Query: 241 ggaagaggtagtgtgggaggggtcagaggtgaaaggtcagagggctgcgaagggggcgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133605064 ggaagaggtagtgtgggaggggtcagaggtgaaaggtcagagggctgcgaagggggcgga 133605123
Query: 301 gcgagccgg-aggcggatggcggctgcggcggctcatcatctttggcggcagaggcgctg 359
||||||||| | ||||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct: 133605124 gcgagccggaaagcggatggc-gctgcngcggctcatcatctttggcggcagaagcgctg 133605182
Query: 360 aagctgggacgcgagtccggcgcgtccggcagttggaggagagcggcggccgctcccaac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133605183 aagctgggacgcgagtccggcgcgtccggcagttggaggagagcggcggccgctcccaac 133605242
Query: 420 atgcacagtctggcgacggctgcg 443
||||||||||||||||||||||||
Sbjct: 133605243 atgcacagtctggcgacggctgcg 133605266
Score = 361 bits (182), Expect = 6e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 443 gcctgtgcctactgcactggctcaagtggatagagaaaagatctatcagtggatcaatga 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133614873 gcctgtgcctactgcactggctcaagtggatagagaaaagatctatcagtggatcaatga 133614932
Query: 503 gctgtccagtcctgaaacaagggaaaatgctttgctggagctaagtaagaagcgagaatc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133614933 gctgtccagtcctgaaacaagggaaaatgctttgctggagctaagtaagaagcgagaatc 133614992
Query: 563 tgttcctgaccttgcacccatgctgtggcattcatttggtactattgcagcacttttaca 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133614993 tgttcctgaccttgcacccatgctgtggcattcatttggtactattgcagcacttttaca 133615052
Query: 623 gg 624
||
Sbjct: 133615053 gg 133615054
Score = 238 bits (120), Expect = 6e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 622 aggaaattgtaaatatttacccatctatcaacccacccaccttgacagcacaccaatcta 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133617124 aggaaattgtaaatatttacccatctatcaacccacccaccttgacagcacaccaatcta 133617183
Query: 682 acagagtttgcaacgctctggcattactgcaatgtgtggcatcacacccagaaaccaggt 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133617184 acagagtttgcaacgctctggcattactgcaatgtgtggcatcacacccagaaaccaggt 133617243
Score = 224 bits (113), Expect = 9e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 849 ggggccctggtaaaaacagatgagcaggaagtaatcaacttcttattgacaacagaaatt 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133627144 ggggccctggtaaaaacagatgagcaggaagtaatcaacttcttattgacaacagaaatt 133627203
Query: 909 atccctttgtgtttgcgcattatggaatctggaagtgaactttctaaaacggt 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133627204 atccctttgtgtttgcgcattatggaatctggaagtgaactttctaaaacggt 133627256
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 959 ggttgccacattcatcctccagaagatcctcttagatgacactggtttggcttatatatg 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133632038 ggttgccacattcatcctccagaagatcctcttagatgacactggtttggcttatatatg 133632097
Query: 1019 ccagacatatgagcgtttctcccatgttgccatgatcttgg 1059
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 133632098 ccagacatatgagcgtttctcccatgttgccatgatcttgg 133632138
Score = 190 bits (96), Expect = 1e-45
Identities = 108/112 (96%)
Strand = Plus / Plus
Query: 1149 agggcacgtgaagcgctcaggcaatgcctccctgaccagctgaaggacacaaacttcgcc 1208
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 133634247 agggcacgtgaagcgctcaggcagtgcctccctgaccagctgaaggacacaaccttcgcc 133634306
Query: 1209 caggtgctaaaagatgacaccaccacaaaacgctgggctgcacaactggtaa 1260
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 133634307 caggtgctaaaagatgacaccaccacaaaacgctggcttgcacaactggtaa 133634358
Score = 186 bits (94), Expect = 2e-44
Identities = 108/115 (93%)
Strand = Plus / Plus
Query: 736 ccaggtcagcatttcttgcagcacacatcccacnnnnnnngtacccctttttgcacactg 795
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 133619730 ccaggtcagcatttcttgcagcacacatcccactttttttgtacccctttttgcacactg 133619789
Query: 796 tcagcaaaacacgtccctttgaatatcttcggctaaccagtcttggagttattgg 850
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133619790 tcagcaaaacacgtccctttgaatatcttcggctaaccagtcttggagttattgg 133619844
Score = 178 bits (90), Expect = 5e-42
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 1058 gggtaagagggtcctgcagctatccaaagagccttctgcccgtctgctgaagcatgtagt 1117
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133632627 gggtaagatggtcctgcagctatccaaagagccttctgcccgtctgctgaagcatgtagt 133632686
Query: 1118 aagatgctaccttcgactctcagataatcccagg 1151
||||||||||||||||||||||||||||||||||
Sbjct: 133632687 aagatgctaccttcgactctcagataatcccagg 133632720
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,024,206
Number of extensions: 220
Number of successful extensions: 220
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 8
Length of query: 1260
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1239
Effective length of database: 2,808,413,156
Effective search space: 3479623900284
Effective search space used: 3479623900284
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)