Animal-Genome cDNA 20110601C-000835

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000835
         (1065 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001030222.1| vitronectin [Bos taurus].                         424   e-119
Alignment   gi|NP_001193562.1| proteoglycan 4 [Bos taurus].                      129   3e-30
Alignment   gi|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membr...    72   8e-13
Alignment   gi|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane...    72   8e-13
Alignment   gi|XP_002694738.1| PREDICTED: matrix metallopeptidase 11-like [...    69   5e-12
Alignment   gi|XP_584877.3| PREDICTED: matrix metallopeptidase 11-like [Bos...    69   5e-12
Alignment   gi|NP_001179551.1| matrix metalloproteinase-16 [Bos taurus].          69   9e-12
Alignment   gi|XP_002692871.1| PREDICTED: matrix metallopeptidase 16 (membr...    69   9e-12
Alignment   gi|NP_776815.1| matrix metalloproteinase-14 precursor [Bos taur...    68   1e-11
Alignment   gi|NP_001178363.1| matrix metallopeptidase 15 (membrane-inserte...    63   5e-10

>ref|NP_001030222.1| vitronectin [Bos taurus].
          Length = 476

 Score =  424 bits (1090), Expect = e-119
 Identities = 205/299 (68%), Positives = 231/299 (77%), Gaps = 19/299 (6%)
 Frame = +2

Query: 194  DQESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQVTRGDVFLQPDDEYRAYD 373
            DQESCKGRCT+GF A RKCQCDELCSYYQSCC D++AECKPQVTRGDVF  P+DEY  +D
Sbjct: 20   DQESCKGRCTEGFNATRKCQCDELCSYYQSCCADFMAECKPQVTRGDVFHLPEDEYGFHD 79

Query: 374  YHEETRHNTSVQEEQR----IPVLLAKTEETPV----LKPEEEAPP-------PGPQTDD 508
            Y +    N++V+ +       PVL A+T ETPV    L PE+E PP       PG  T D
Sbjct: 80   YSDAQTVNSNVEAQPESTTLAPVLQAQTLETPVQAPVLNPEKEVPPSGRGDSEPGMGTSD 139

Query: 509  LGVPE----EELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIK 676
            LG  E    EE CSGKPFDAFT+LKNGS+FAFRGLYCYELDEKAVRPGYPKLI+DVWGI+
Sbjct: 140  LGTSESPAEEETCSGKPFDAFTDLKNGSLFAFRGLYCYELDEKAVRPGYPKLIRDVWGIE 199

Query: 677  GPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXH 856
            GPIDAAFTR+NCQGKTYLFKGSQYWRF DGVL+P++PR IS+GF GI            H
Sbjct: 200  GPIDAAFTRVNCQGKTYLFKGSQYWRFQDGVLEPDFPRNISDGFGGIPDDVDAALALPAH 259

Query: 857  SYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQRDSWEDIFRLLFW 1033
            +++GRERVYFFKG  YWEYVFQQQPS+E+CEGSS    F HFALMQRDSW DIFRLLFW
Sbjct: 260  NFNGRERVYFFKGNHYWEYVFQQQPSQEDCEGSSLPAAFKHFALMQRDSWVDIFRLLFW 318


>ref|NP_001193562.1| proteoglycan 4 [Bos taurus].
          Length = 1195

 Score =  129 bits (325), Expect = 3e-30
 Identities = 75/194 (38%), Positives = 107/194 (55%), Gaps = 8/194 (4%)
 Frame = +2

Query: 452  TPVLKPEEEAPPPGPQT----DDLGVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELD 619
            TP++ P  E    GP      + +   E  LC+G+P D  T L+NG++ AFRG Y + L 
Sbjct: 906  TPIVIPGTEIIVRGPSQGFGINPMFSDETNLCNGRPVDGLTTLRNGTLVAFRGHYFWMLT 965

Query: 620  EKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREIS 799
                 P  P+ I +VWGI  PID  FTR NC+GKT+ FKGSQYWRF + + D  YP+ IS
Sbjct: 966  PFTPPPP-PRRITEVWGIPSPIDTVFTRCNCEGKTFFFKGSQYWRFTNDIKDAGYPKLIS 1024

Query: 800  EGFKGIXXXXXXXXXXXXHSYSGRERVYFFK-GKQYWEYVFQQQPSREECEGSSPS---D 967
            +GF G+            +  S  E VYFFK G    +Y ++Q+P+ ++C G  P+    
Sbjct: 1025 KGFGGLNGKIVAALSIAQYK-SRPESVYFFKRGGSVQQYTYKQEPT-QKCTGRRPAINYS 1082

Query: 968  VFAHFALMQRDSWE 1009
            V+   A ++R  +E
Sbjct: 1083 VYGETAQVRRRRFE 1096



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 194 DQESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQVT 325
           D  SC GRC +G+  +  C CD  C +Y  CC D+  EC  +++
Sbjct: 25  DLSSCAGRCGEGYSRDAICNCDYNCQHYTECCPDFKKECTVELS 68


>ref|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
           taurus].
          Length = 596

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 5/169 (2%)
 Frame = +2

Query: 422 IPVLLAKTEETPVLKPEEEAP-PPGPQTDDLGVP---EEELCSGKPFDAFTNLKNGSVFA 589
           +P L  +   +P  +  E  P PP P   D       +  +C G  F+    L  G +F 
Sbjct: 290 LPTLPVRRIHSPSERKHERQPRPPRPPLGDRPATPGAKPNICDGN-FNTVA-LFRGEMFV 347

Query: 590 FRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDG 766
           F+  + + L    V+ GYP  I+  W G+   IDAA+ R +  G+   FKG +YW F + 
Sbjct: 348 FKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERAD--GRFVFFKGDKYWVFKEV 405

Query: 767 VLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
            ++P YP  + E    +              +    + YFFKG++YW Y
Sbjct: 406 TVEPGYPHSLGE----LGSCLPREGIDTALRWEPVGKTYFFKGERYWRY 450



 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
 Frame = +2

Query: 575 GSVFAFRG--LYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGK-TYLFKGSQ 745
           G  + F+G   + Y  + +A  PGYPK I    GI      AF  I+ +G  TY +KG  
Sbjct: 437 GKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQGAF--ISKEGYYTYFYKGRD 494

Query: 746 YWRFDDGVL--DPNYPREISEGFKG 814
           YW+FD+  L  +P YPR I   + G
Sbjct: 495 YWKFDNQKLSVEPGYPRNILRDWMG 519


>ref|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
           taurus].
          Length = 568

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 5/169 (2%)
 Frame = +2

Query: 422 IPVLLAKTEETPVLKPEEEAP-PPGPQTDDLGVP---EEELCSGKPFDAFTNLKNGSVFA 589
           +P L  +   +P  +  E  P PP P   D       +  +C G  F+    L  G +F 
Sbjct: 262 LPTLPVRRIHSPSERKHERQPRPPRPPLGDRPATPGAKPNICDGN-FNTVA-LFRGEMFV 319

Query: 590 FRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDG 766
           F+  + + L    V+ GYP  I+  W G+   IDAA+ R +  G+   FKG +YW F + 
Sbjct: 320 FKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERAD--GRFVFFKGDKYWVFKEV 377

Query: 767 VLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
            ++P YP  + E    +              +    + YFFKG++YW Y
Sbjct: 378 TVEPGYPHSLGE----LGSCLPREGIDTALRWEPVGKTYFFKGERYWRY 422



 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
 Frame = +2

Query: 575 GSVFAFRG--LYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGK-TYLFKGSQ 745
           G  + F+G   + Y  + +A  PGYPK I    GI      AF  I+ +G  TY +KG  
Sbjct: 409 GKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQGAF--ISKEGYYTYFYKGRD 466

Query: 746 YWRFDDGVL--DPNYPREISEGFKG 814
           YW+FD+  L  +P YPR I   + G
Sbjct: 467 YWKFDNQKLSVEPGYPRNILRDWMG 491


>ref|XP_002694738.1| PREDICTED: matrix metallopeptidase 11-like [Bos taurus].
          Length = 466

 Score = 69.3 bits (168), Expect = 5e-12
 Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 5/195 (2%)
 Frame = +2

Query: 401 SVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVPEEEL---CSGKPFDAFTNLK 571
           S  + + I  L  + +  P  +P +  P  G  T+++   E +         FDA   ++
Sbjct: 224 SPDDRRGIQQLYGRPQLAPTSRPPDLGPGTGADTNEIAPLEPDAPPDACQVSFDAAATIR 283

Query: 572 NGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQY 748
            G +F F+  + + L    ++PGYP L    W G+  P+DAAF   + QG  + F+G+QY
Sbjct: 284 -GELFFFKAGFVWRLRGGRLQPGYPALASRHWQGLPSPVDAAFE--DAQGHIWFFQGAQY 340

Query: 749 WRFDDGVLDPNYPREISE-GFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQ 925
           W + DG      P  +SE G +G                S + ++YFF+   YW +    
Sbjct: 341 WVY-DGEKPVLGPAPLSELGLQGSPIHAALVWG------SEKNKIYFFRSGDYWRF---- 389

Query: 926 QPSREECEGSSPSDV 970
           QPS    +   P  V
Sbjct: 390 QPSARRVDSPVPRRV 404


>ref|XP_584877.3| PREDICTED: matrix metallopeptidase 11-like [Bos taurus].
          Length = 466

 Score = 69.3 bits (168), Expect = 5e-12
 Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 5/195 (2%)
 Frame = +2

Query: 401 SVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVPEEEL---CSGKPFDAFTNLK 571
           S  + + I  L  + +  P  +P +  P  G  T+++   E +         FDA   ++
Sbjct: 224 SPDDRRGIQQLYGRPQLAPTSRPPDLGPGTGADTNEIAPLEPDAPPDACQVSFDAAATIR 283

Query: 572 NGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQY 748
            G +F F+  + + L    ++PGYP L    W G+  P+DAAF   + QG  + F+G+QY
Sbjct: 284 -GELFFFKAGFVWRLRGGRLQPGYPALASRHWQGLPSPVDAAFE--DAQGHIWFFQGAQY 340

Query: 749 WRFDDGVLDPNYPREISE-GFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEYVFQQ 925
           W + DG      P  +SE G +G                S + ++YFF+   YW +    
Sbjct: 341 WVY-DGEKPVLGPAPLSELGLQGSPIHAALVWG------SEKNKIYFFRSGDYWRF---- 389

Query: 926 QPSREECEGSSPSDV 970
           QPS    +   P  V
Sbjct: 390 QPSARRVDSPVPRRV 404


>ref|NP_001179551.1| matrix metalloproteinase-16 [Bos taurus].
          Length = 607

 Score = 68.6 bits (166), Expect = 9e-12
 Identities = 47/171 (27%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
 Frame = +2

Query: 443 TEETPVLKPEEEAPPPGPQTDDLGVP-------------EEELCSGKPFDAFTNLKNGSV 583
           T   P + P    PP  P+ +D   P             +  +C G  F+    L+   +
Sbjct: 300 TRPLPTVPPHRSVPPADPRKNDRPKPPRPPTGRPSYPGAKPNICDGN-FNTLAILRR-EM 357

Query: 584 FAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD 760
           F F+  + + +    V  GYP  I   W G+   IDA +   N  G    FKG++YW F 
Sbjct: 358 FVFKDQWFWRVRNHRVMDGYPMQITYFWRGLPPSIDAVYE--NSDGNFVFFKGNKYWVFK 415

Query: 761 DGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
           D  L P YP ++     GI              +    + YFFKG +YW Y
Sbjct: 416 DTTLQPGYPHDLITLGSGIPPHGIDSAIW----WEDVGKTYFFKGDRYWRY 462



 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 23/162 (14%)
 Frame = +2

Query: 551 DAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGP--IDAAFTRINCQGKT 724
           DA     +G+   F+G   +   +  ++PGYP  +  +     P  ID+A    +  GKT
Sbjct: 393 DAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDV-GKT 451

Query: 725 YLFKGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGK 898
           Y FKG +YWR+ + +  +DP YP+ I+  +KGI            + ++     YF+KGK
Sbjct: 452 YFFKGDRYWRYSEEMKTMDPGYPKPITV-WKGIPESPQGAFVHKENGFT-----YFYKGK 505

Query: 899 QYWEYVFQ-------------------QQPSREECEGSSPSD 967
           +YW++  Q                     P+  E EG SP D
Sbjct: 506 EYWKFNNQILKVEPGYPRSILKDFMGCDGPTDREKEGHSPPD 547


>ref|XP_002692871.1| PREDICTED: matrix metallopeptidase 16 (membrane-inserted) [Bos
           taurus].
          Length = 607

 Score = 68.6 bits (166), Expect = 9e-12
 Identities = 47/171 (27%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
 Frame = +2

Query: 443 TEETPVLKPEEEAPPPGPQTDDLGVP-------------EEELCSGKPFDAFTNLKNGSV 583
           T   P + P    PP  P+ +D   P             +  +C G  F+    L+   +
Sbjct: 300 TRPLPTVPPHRSVPPADPRKNDRPKPPRPPTGRPSYPGAKPNICDGN-FNTLAILRR-EM 357

Query: 584 FAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD 760
           F F+  + + +    V  GYP  I   W G+   IDA +   N  G    FKG++YW F 
Sbjct: 358 FVFKDQWFWRVRNHRVMDGYPMQITYFWRGLPPSIDAVYE--NSDGNFVFFKGNKYWVFK 415

Query: 761 DGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
           D  L P YP ++     GI              +    + YFFKG +YW Y
Sbjct: 416 DTTLQPGYPHDLITLGSGIPPHGIDSAIW----WEDVGKTYFFKGDRYWRY 462



 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 23/162 (14%)
 Frame = +2

Query: 551 DAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGP--IDAAFTRINCQGKT 724
           DA     +G+   F+G   +   +  ++PGYP  +  +     P  ID+A    +  GKT
Sbjct: 393 DAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDV-GKT 451

Query: 725 YLFKGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGK 898
           Y FKG +YWR+ + +  +DP YP+ I+  +KGI            + ++     YF+KGK
Sbjct: 452 YFFKGDRYWRYSEEMKTMDPGYPKPITV-WKGIPESPQGAFVHKENGFT-----YFYKGK 505

Query: 899 QYWEYVFQ-------------------QQPSREECEGSSPSD 967
           +YW++  Q                     P+  E EG SP D
Sbjct: 506 EYWKFNNQILKVEPGYPRSILKDFMGCDGPTDREKEGHSPPD 547


>ref|NP_776815.1| matrix metalloproteinase-14 precursor [Bos taurus].
          Length = 582

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 6/243 (2%)
 Frame = +2

Query: 338  FLQPDDEYRAYD--YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDL 511
            F+ PDD+ R     Y  ++   T +  + R       T   P +  + + P  GP     
Sbjct: 268  FVLPDDDRRGIQQLYGSKSGSPTKMPPQPR-------TTSRPSVPDKPKNPTYGPN---- 316

Query: 512  GVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPID 688
                  +C G  FD    L+ G +F F+  + + + +  V  GYP  I   W G+   I+
Sbjct: 317  ------ICDGN-FDTVAMLR-GEMFVFKERWFWRVRKNQVMDGYPMPIGQFWRGLPASIN 368

Query: 689  AAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSG 868
             A+ R +  GK   FKG ++W FD+  L+P YP+ I E  +G+              +  
Sbjct: 369  TAYERKD--GKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDRIDAALF----WMP 422

Query: 869  RERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQRDSW---EDIFRLLFWSH 1039
              + YFF+G +Y  Y F ++    E E      V+       R S+   +++F   +  +
Sbjct: 423  NGKTYFFRGNKY--YRFNEELRIVESEYPKNIKVWEGIPESPRGSFMGSDEVFTYFYKGN 480

Query: 1040 FFW 1048
             +W
Sbjct: 481  KYW 483



 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
 Frame = +2

Query: 569 KNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGP-IDAAFTRINCQGKTYLFKGS 742
           K+G    F+G   +  DE ++ PGYPK I+++  G+    IDAA   +   GKTY F+G+
Sbjct: 374 KDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDRIDAALFWMP-NGKTYFFRGN 432

Query: 743 QYWRFDDG--VLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERV--YFFKGKQYWE 910
           +Y+RF++   +++  YP+ I   ++GI             S+ G + V  YF+KG +YW+
Sbjct: 433 KYYRFNEELRIVESEYPKNIKV-WEGIPESPRG-------SFMGSDEVFTYFYKGNKYWK 484

Query: 911 Y 913
           +
Sbjct: 485 F 485


>ref|NP_001178363.1| matrix metallopeptidase 15 (membrane-inserted) [Bos taurus].
          Length = 675

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 4/154 (2%)
 Frame = +2

Query: 464 KPEEEAPPPGPQTDDLGVPEE---ELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVR 634
           +P +  PPP P+  +   P++    +C G  FD    L+ G +F F+G + + +    V 
Sbjct: 346 RPPKPGPPPQPRATER--PDQYGPNICDGD-FDTVAMLR-GEMFVFKGRWFWRVRHNRVL 401

Query: 635 PGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFK 811
             YP  I   W G+   I AA+ R +  G+   FKG +YW F +  L+P YP+ ++    
Sbjct: 402 DNYPMPIGHFWRGLPSDISAAYERQD--GRFVFFKGDRYWLFREANLEPGYPQPLTSYGL 459

Query: 812 GIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
           GI              +      +FF+  +YW +
Sbjct: 460 GIPYDRIDTAIW----WEPTGHTFFFQEDRYWRF 489



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 11/184 (5%)
 Frame = +2

Query: 503  DDLGVPEEELCSGKPFD--AFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIK 676
            D+  +P      G P D  A    ++G    F+G   +   E  + PGYP+ +   +G+ 
Sbjct: 402  DNYPMPIGHFWRGLPSDISAAYERQDGRFVFFKGDRYWLFREANLEPGYPQPLTS-YGLG 460

Query: 677  GPIDAAFTRINCQ--GKTYLFKGSQYWRFDDGVL--DPNYPREISEGFKGIXXXXXXXXX 844
             P D   T I  +  G T+ F+  +YWRF++     DP YP+ IS  ++GI         
Sbjct: 461  IPYDRIDTAIWWEPTGHTFFFQEDRYWRFNEETQRGDPGYPKPISV-WQGIPASPKGAFL 519

Query: 845  XXXHSYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQR-----DSWE 1009
                +Y+     YF+KG +YW++       R   E   P  +   F   Q        W 
Sbjct: 520  SNDAAYT-----YFYKGTKYWKF----DNERLRMEPGYPKSILRDFMGCQEHVEPGPRWP 570

Query: 1010 DIFR 1021
            D+ R
Sbjct: 571  DVAR 574



 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
 Frame = +2

Query: 488 PGPQTD-DLGVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVR--PGYPKLIQ 658
           P P T   LG+P + + +   ++       G  F F+    +  +E+  R  PGYPK I 
Sbjct: 451 PQPLTSYGLGIPYDRIDTAIWWEP-----TGHTFFFQEDRYWRFNEETQRGDPGYPKPIS 505

Query: 659 DVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVL--DPNYPREISEGFKG 814
              GI      AF   N    TY +KG++YW+FD+  L  +P YP+ I   F G
Sbjct: 506 VWQGIPASPKGAFLS-NDAAYTYFYKGTKYWKFDNERLRMEPGYPKSILRDFMG 558


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,773,795
Number of extensions: 1336469
Number of successful extensions: 6989
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 6807
Number of HSP's successfully gapped: 33
Length of query: 355
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 252
Effective length of database: 14,273,310
Effective search space: 3596874120
Effective search space used: 3596874120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000835
         (1065 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537741.1| PREDICTED: similar to Vitronectin precursor (Se...   434   e-122
Alignment   gi|XP_868139.1| PREDICTED: similar to Vitronectin precursor (Se...   434   e-122
Alignment   gi|XP_854040.1| PREDICTED: similar to Vitronectin precursor (Se...   434   e-122
Alignment   gi|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-...    72   1e-12
Alignment   gi|XP_544165.2| PREDICTED: similar to matrix metalloproteinase ...    69   1e-11
Alignment   gi|XP_856947.1| PREDICTED: similar to matrix metalloproteinase ...    69   1e-11
Alignment   gi|NP_001229661.1| stromelysin-3 [Canis lupus familiaris].            65   1e-10
Alignment   gi|XP_848757.1| PREDICTED: similar to matrix metalloproteinase ...    65   1e-10
Alignment   gi|XP_544383.2| PREDICTED: similar to matrix metalloproteinase ...    60   3e-09
Alignment   gi|XP_852332.1| PREDICTED: similar to matrix metalloproteinase ...    55   1e-07

>ref|XP_537741.1| PREDICTED: similar to Vitronectin precursor (Serum spreading factor)
            (S-protein) (V75) isoform 1 [Canis familiaris].
          Length = 458

 Score =  434 bits (1116), Expect = e-122
 Identities = 212/297 (71%), Positives = 231/297 (77%), Gaps = 16/297 (5%)
 Frame = +2

Query: 194  DQESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQVTRGDVFLQPDDEYRAYD 373
            DQESCKGRCT+GF A+RKCQCDELCSYYQSCC DYVAECKPQVTRGDVF  P+DEY   D
Sbjct: 20   DQESCKGRCTEGFNADRKCQCDELCSYYQSCCEDYVAECKPQVTRGDVFALPEDEYGVID 79

Query: 374  YHEETRHN---TSVQEEQRIPVLLAKTE----ETPVLKPEEEAPPPGPQTDDLGVP---- 520
             HE TR     T ++     P L A++E    + P+L PEEEAP PG  T  L  P    
Sbjct: 80   DHEGTREQSVLTQLESTTLSPGLQAQSEKFPAQVPILIPEEEAPGPGQGTLVLEAPDQDI 139

Query: 521  -----EEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPI 685
                 EEELCSGKPFDAFT+LKNGS+FAFRG YCYELDEKAVRPGYPKLI+DVWGI+GPI
Sbjct: 140  SESAAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYPKLIRDVWGIEGPI 199

Query: 686  DAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYS 865
            DAAFTRINCQGKTYLFKGSQYWRF+DGVLDP+YPR ISEGFKGI             SYS
Sbjct: 200  DAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISEGFKGIPDNVDAAFALPARSYS 259

Query: 866  GRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQRDSWEDIFRLLFWS 1036
            GRERVYFFKG+QYWEY FQQQPS+EECEGSS S VF HFAL+QRDSWE  F LLFW+
Sbjct: 260  GRERVYFFKGRQYWEYEFQQQPSQEECEGSSLSTVFEHFALLQRDSWETFFELLFWN 316


>ref|XP_868139.1| PREDICTED: similar to Vitronectin precursor (Serum spreading factor)
            (S-protein) (V75) isoform 3 [Canis familiaris].
          Length = 459

 Score =  434 bits (1116), Expect = e-122
 Identities = 212/297 (71%), Positives = 231/297 (77%), Gaps = 16/297 (5%)
 Frame = +2

Query: 194  DQESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQVTRGDVFLQPDDEYRAYD 373
            DQESCKGRCT+GF A+RKCQCDELCSYYQSCC DYVAECKPQVTRGDVF  P+DEY   D
Sbjct: 20   DQESCKGRCTEGFNADRKCQCDELCSYYQSCCEDYVAECKPQVTRGDVFALPEDEYGVID 79

Query: 374  YHEETRHN---TSVQEEQRIPVLLAKTE----ETPVLKPEEEAPPPGPQTDDLGVP---- 520
             HE TR     T ++     P L A++E    + P+L PEEEAP PG  T  L  P    
Sbjct: 80   DHEGTREQSVLTQLESTTLSPGLQAQSEKFPAQVPILIPEEEAPGPGQGTLVLEAPDQDI 139

Query: 521  -----EEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPI 685
                 EEELCSGKPFDAFT+LKNGS+FAFRG YCYELDEKAVRPGYPKLI+DVWGI+GPI
Sbjct: 140  SESAAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYPKLIRDVWGIEGPI 199

Query: 686  DAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYS 865
            DAAFTRINCQGKTYLFKGSQYWRF+DGVLDP+YPR ISEGFKGI             SYS
Sbjct: 200  DAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISEGFKGIPDNVDAAFALPARSYS 259

Query: 866  GRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQRDSWEDIFRLLFWS 1036
            GRERVYFFKG+QYWEY FQQQPS+EECEGSS S VF HFAL+QRDSWE  F LLFW+
Sbjct: 260  GRERVYFFKGRQYWEYEFQQQPSQEECEGSSLSTVFEHFALLQRDSWETFFELLFWN 316


>ref|XP_854040.1| PREDICTED: similar to Vitronectin precursor (Serum spreading factor)
            (S-protein) (V75) isoform 2 [Canis familiaris].
          Length = 470

 Score =  434 bits (1116), Expect = e-122
 Identities = 212/297 (71%), Positives = 231/297 (77%), Gaps = 16/297 (5%)
 Frame = +2

Query: 194  DQESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQVTRGDVFLQPDDEYRAYD 373
            DQESCKGRCT+GF A+RKCQCDELCSYYQSCC DYVAECKPQVTRGDVF  P+DEY   D
Sbjct: 20   DQESCKGRCTEGFNADRKCQCDELCSYYQSCCEDYVAECKPQVTRGDVFALPEDEYGVID 79

Query: 374  YHEETRHN---TSVQEEQRIPVLLAKTE----ETPVLKPEEEAPPPGPQTDDLGVP---- 520
             HE TR     T ++     P L A++E    + P+L PEEEAP PG  T  L  P    
Sbjct: 80   DHEGTREQSVLTQLESTTLSPGLQAQSEKFPAQVPILIPEEEAPGPGQGTLVLEAPDQDI 139

Query: 521  -----EEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPI 685
                 EEELCSGKPFDAFT+LKNGS+FAFRG YCYELDEKAVRPGYPKLI+DVWGI+GPI
Sbjct: 140  SESAAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYPKLIRDVWGIEGPI 199

Query: 686  DAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYS 865
            DAAFTRINCQGKTYLFKGSQYWRF+DGVLDP+YPR ISEGFKGI             SYS
Sbjct: 200  DAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISEGFKGIPDNVDAAFALPARSYS 259

Query: 866  GRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQRDSWEDIFRLLFWS 1036
            GRERVYFFKG+QYWEY FQQQPS+EECEGSS S VF HFAL+QRDSWE  F LLFW+
Sbjct: 260  GRERVYFFKGRQYWEYEFQQQPSQEECEGSSLSTVFEHFALLQRDSWETFFELLFWN 316


>ref|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-24 precursor
           (MMP-24) (Membrane-type matrix metalloproteinase 5)
           (MT-MMP 5) (Membrane-type-5 matrix metalloproteinase)
           (MT5-MMP) [Canis familiaris].
          Length = 626

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 5/169 (2%)
 Frame = +2

Query: 422 IPVLLAKTEETPVLKPEEEAP-PPGPQTDDL-GVP--EEELCSGKPFDAFTNLKNGSVFA 589
           +P L  +   +P  +  E  P PP P   D    P  +  +C G  F+    L  G +F 
Sbjct: 320 LPTLPVRRIHSPSERKHERQPRPPRPPLGDRPSTPGAKPNICDGN-FNTVA-LFRGEMFV 377

Query: 590 FRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDG 766
           F+  + + L    V+ GYP  I+  W G+   IDAA+ R +  G+   FKG +YW F + 
Sbjct: 378 FKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERAD--GRFVFFKGDKYWVFKEV 435

Query: 767 VLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
            ++P YP  + E    +              +    + YFFKG++YW Y
Sbjct: 436 TVEPGYPHSLGE----LGSCLPREGIDTALRWEPVGKTYFFKGERYWRY 480



 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
 Frame = +2

Query: 575 GSVFAFRG--LYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGK-TYLFKGSQ 745
           G  + F+G   + Y  + +A  PGYPK I    GI      AF  I+ +G  TY +KG  
Sbjct: 467 GKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQGAF--ISKEGYYTYFYKGRD 524

Query: 746 YWRFDDGVL--DPNYPREISEGFKG 814
           YW+FD+  L  +P YPR I   + G
Sbjct: 525 YWKFDNQKLSVEPGYPRNILRDWMG 549


>ref|XP_544165.2| PREDICTED: similar to matrix metalloproteinase 16 isoform 1 [Canis
           familiaris].
          Length = 595

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 47/171 (27%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
 Frame = +2

Query: 443 TEETPVLKPEEEAPPPGPQTDDLGVP-------------EEELCSGKPFDAFTNLKNGSV 583
           T   P + P    PP  P+ +D   P             +  +C G  F+    L+   +
Sbjct: 288 TRPLPTVPPHRSIPPADPRKNDRPKPPRPPTGRPSYPGAKPNICDGN-FNTLAILRR-EM 345

Query: 584 FAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD 760
           F F+  + + +    V  GYP  I   W G+   IDA +   N  G    FKG++YW F 
Sbjct: 346 FVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYE--NSDGNFVFFKGNKYWVFK 403

Query: 761 DGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
           D  L P YP ++     GI              +    + YFFKG +YW Y
Sbjct: 404 DTTLQPGYPHDLITLGSGIPPHGIDSAIW----WEDVGKTYFFKGDRYWRY 450



 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
 Frame = +2

Query: 551 DAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGP--IDAAFTRINCQGKT 724
           DA     +G+   F+G   +   +  ++PGYP  +  +     P  ID+A    +  GKT
Sbjct: 381 DAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDV-GKT 439

Query: 725 YLFKGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGK 898
           Y FKG +YWR+ + +  +DP YP+ I+  +KGI            + ++     YF+KGK
Sbjct: 440 YFFKGDRYWRYSEEMKTMDPGYPKPITV-WKGIPESPQGAFVHKENGFT-----YFYKGK 493

Query: 899 QYWEY 913
           +YW++
Sbjct: 494 EYWKF 498



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
 Frame = +2

Query: 575 GSVFAFRG--LYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQY 748
           G  + F+G   + Y  + K + PGYPK I    GI      AF      G TY +KG +Y
Sbjct: 437 GKTYFFKGDRYWRYSEEMKTMDPGYPKPITVWKGIPESPQGAFVHKE-NGFTYFYKGKEY 495

Query: 749 WRFDDGVL--DPNYPREISEGFKG 814
           W+F++ +L  +P YPR I + F G
Sbjct: 496 WKFNNQILKVEPGYPRSILKDFMG 519


>ref|XP_856947.1| PREDICTED: similar to matrix metalloproteinase 14 preproprotein
           isoform 2 [Canis familiaris].
          Length = 582

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 3/195 (1%)
 Frame = +2

Query: 338 FLQPDDEYRAYD--YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDL 511
           F+ PDD+ R     Y  E+   T +  + R       T   P +  + + P  GP     
Sbjct: 268 FVLPDDDRRGIQQLYGSESGSPTKMPPQPR-------TTSRPSVPDKPKNPTYGPN---- 316

Query: 512 GVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPID 688
                 +C G  FD    L+ G +F F+  + + +    V  GYP  I   W G+   I+
Sbjct: 317 ------ICDGN-FDTVAVLR-GEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASIN 368

Query: 689 AAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSG 868
            A+ R +  GK   FKG ++W FD+  L+P YP+ I E  +G+              +  
Sbjct: 369 TAYERKD--GKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALF----WMP 422

Query: 869 RERVYFFKGKQYWEY 913
             + YFF+G +Y+ +
Sbjct: 423 NGKTYFFRGNKYYRF 437



 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
 Frame = +2

Query: 569 KNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIK-GPIDAAFTRINCQGKTYLFKGS 742
           K+G    F+G   +  DE ++ PGYPK I+++  G+    IDAA   +   GKTY F+G+
Sbjct: 374 KDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMP-NGKTYFFRGN 432

Query: 743 QYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERV--YFFKGKQYWE 910
           +Y+RF++ +  +D  YP+ I + ++GI             S+ G + V  YF+KG +YW+
Sbjct: 433 KYYRFNEELRAVDSEYPKNI-KVWEGIPESPRG-------SFMGSDEVFTYFYKGNKYWK 484

Query: 911 Y 913
           +
Sbjct: 485 F 485


>ref|NP_001229661.1| stromelysin-3 [Canis lupus familiaris].
          Length = 489

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 55/205 (26%), Positives = 87/205 (42%), Gaps = 11/205 (5%)
 Frame = +2

Query: 401 SVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVPEEELCSGK---PFDAFTNLK 571
           S  + + I  L  +    P  +P    P  G  T+++   E E         FDA + ++
Sbjct: 247 SPDDRRGIQHLYGQPRTAPTSRPPAVGPQAGVDTNEIAPLEPEAPPDACEITFDAVSTIR 306

Query: 572 NGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQY 748
            G +F F+  + + L    ++PGYP L    W G+  P+DAAF   + QG  + F+G+QY
Sbjct: 307 -GELFFFKAGFVWRLRGGRLQPGYPALASRHWQGLPSPVDAAFE--DAQGHIWFFQGAQY 363

Query: 749 WRFDDGVLDPNYPREISE-GFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY---- 913
           W + +G      P  +SE G  G                  + ++YFF G+ YW +    
Sbjct: 364 WVY-NGEKPVLGPAPLSELGLLGSPIQAALAWGPE------KNKIYFFGGRDYWRFHLST 416

Query: 914 --VFQQQPSREECEGSSPSDVFAHF 982
             V    P R       PS++ A F
Sbjct: 417 RRVDSPVPRRATDWRGVPSEIDAAF 441


>ref|XP_848757.1| PREDICTED: similar to matrix metalloproteinase 14 preproprotein
           isoform 1 [Canis familiaris].
          Length = 585

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 6/198 (3%)
 Frame = +2

Query: 338 FLQPDDEYRAYD--YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDL 511
           F+ PDD+ R     Y  E+   T +  + R       T   P +  + + P  GP     
Sbjct: 268 FVLPDDDRRGIQQLYGSESGSPTKMPPQPR-------TTSRPSVPDKPKNPTYGPN---- 316

Query: 512 GVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPID 688
                 +C G  FD    L+ G +F F+  + + +    V  GYP  I   W G+   I+
Sbjct: 317 ------ICDGN-FDTVAVLR-GEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASIN 368

Query: 689 AAFTRINCQGKTYLFKGS---QYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHS 859
            A+ R +  GK   FKG+   Q+W FD+  L+P YP+ I E  +G+              
Sbjct: 369 TAYERKD--GKFVFFKGNHGTQHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALF---- 422

Query: 860 YSGRERVYFFKGKQYWEY 913
           +    + YFF+G +Y+ +
Sbjct: 423 WMPNGKTYFFRGNKYYRF 440



 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 9/124 (7%)
 Frame = +2

Query: 569 KNGSVFAFRGLYCYE---LDEKAVRPGYPKLIQDVW-GIK-GPIDAAFTRINCQGKTYLF 733
           K+G    F+G +  +    DE ++ PGYPK I+++  G+    IDAA   +   GKTY F
Sbjct: 374 KDGKFVFFKGNHGTQHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMP-NGKTYFF 432

Query: 734 KGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERV--YFFKGKQ 901
           +G++Y+RF++ +  +D  YP+ I + ++GI             S+ G + V  YF+KG +
Sbjct: 433 RGNKYYRFNEELRAVDSEYPKNI-KVWEGIPESPRG-------SFMGSDEVFTYFYKGNK 484

Query: 902 YWEY 913
           YW++
Sbjct: 485 YWKF 488


>ref|XP_544383.2| PREDICTED: similar to matrix metalloproteinase 14
           (membrane-inserted) [Canis familiaris].
          Length = 741

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 17/211 (8%)
 Frame = +2

Query: 332 DVFLQPDDEYRAYDYHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEE--EAPPPGPQTD 505
           D F  P+D+ R       T      Q  + +P +  +    P  +P    + PPPG + +
Sbjct: 350 DTFQLPEDDLRGIQQLYGTPDGQP-QPTRPLPTVTPRRPGRPDHRPPRPPQPPPPGGKPE 408

Query: 506 ---DLGVPEEELCSGKP-----------FDAFTNLKNGSVFAFRGLYCYELDEKAVRPGY 643
                G P +   + +P           FD    L+ G +F F+G + + +    V   Y
Sbjct: 409 RPPKPGPPAQPRATERPDQYGPNICDGDFDTVAMLR-GEMFVFKGRWFWRVRHNRVLDNY 467

Query: 644 PKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIX 820
           P  I   W G+   I AA+ R +  G+   FKG +YW F +  L+P YP+ ++    GI 
Sbjct: 468 PMPIGHFWRGLPSDISAAYERQD--GRFVFFKGDRYWLFREANLEPGYPQPLTSYGLGIP 525

Query: 821 XXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
                        +      +FF+  +YW +
Sbjct: 526 YDRIDTAIW----WEPTGHTFFFQEDRYWRF 552



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 11/184 (5%)
 Frame = +2

Query: 503  DDLGVPEEELCSGKPFD--AFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIK 676
            D+  +P      G P D  A    ++G    F+G   +   E  + PGYP+ +   +G+ 
Sbjct: 465  DNYPMPIGHFWRGLPSDISAAYERQDGRFVFFKGDRYWLFREANLEPGYPQPLTS-YGLG 523

Query: 677  GPIDAAFTRINCQ--GKTYLFKGSQYWRFDDGVL--DPNYPREISEGFKGIXXXXXXXXX 844
             P D   T I  +  G T+ F+  +YWRF++     DP YP+ IS  ++GI         
Sbjct: 524  IPYDRIDTAIWWEPTGHTFFFQEDRYWRFNEETQRGDPGYPKPISV-WQGIPTSPKGAFL 582

Query: 845  XXXHSYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQRD-----SWE 1009
                +Y+     YF+KG +YW++       R   E   P  +   F   Q        W 
Sbjct: 583  SNDAAYT-----YFYKGTKYWKF----DNERLRMEPGYPKSILRDFMGCQEQVEPGPRWP 633

Query: 1010 DIFR 1021
            D+ R
Sbjct: 634  DVAR 637


>ref|XP_852332.1| PREDICTED: similar to matrix metalloproteinase 17 preproprotein
           [Canis familiaris].
          Length = 661

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
 Frame = +2

Query: 590 FRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGV 769
           F+G   +   +  V  GYP+ + D     G +DAAF+  +   KTY FK   YWRFD+  
Sbjct: 466 FKGDRYWVFKDNNVEEGYPRPVSDFGLPPGGVDAAFSWSH-NDKTYFFKDQLYWRFDEHT 524

Query: 770 --LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWE 910
             +DP +P   S  ++GI             +       YFF+GK+YW+
Sbjct: 525 RRMDPGHPAR-SPPWRGIPSTLDDAMCWSDGA------AYFFRGKEYWK 566



 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 15/164 (9%)
 Frame = +2

Query: 467 PEEEAPP---PGPQTDDLGVPEEEL---CSGKPFDAFTNLKNGSVFAFRGLYCYELDEKA 628
           PE + PP     P      +P +++   CS   FDA   ++ G  F F+G Y + L    
Sbjct: 370 PEPKEPPLLPEPPNNRSSTLPRKDVPHRCS-TDFDAVAQIR-GEAFFFKGKYFWRL---- 423

Query: 629 VRPGY-----PKLIQDVW-GIK---GPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPN 781
            R G+     P  +   W G+      +DA + R +   K   FKG +YW F D  ++  
Sbjct: 424 TRDGHLVSLQPAQMHRFWRGLPLQLDSVDAVYERTS-DHKIVFFKGDRYWVFKDNNVEEG 482

Query: 782 YPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
           YPR +S+                  S+S  ++ YFFK + YW +
Sbjct: 483 YPRPVSD------FGLPPGGVDAAFSWSHNDKTYFFKDQLYWRF 520


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,616,597
Number of extensions: 1372763
Number of successful extensions: 7543
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 7228
Number of HSP's successfully gapped: 23
Length of query: 355
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 251
Effective length of database: 15,407,560
Effective search space: 3867297560
Effective search space used: 3867297560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000835
         (1065 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000629.3| vitronectin precursor [Homo sapiens].                436   e-122
Alignment   gi|NP_001121182.1| proteoglycan 4 isoform D [Homo sapiens].          120   2e-27
Alignment   gi|NP_001121181.1| proteoglycan 4 isoform C [Homo sapiens].          120   2e-27
Alignment   gi|NP_001121180.1| proteoglycan 4 isoform B [Homo sapiens].          120   2e-27
Alignment   gi|NP_005798.2| proteoglycan 4 isoform A [Homo sapiens].             120   2e-27
Alignment   gi|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo...    72   1e-12
Alignment   gi|NP_005932.2| matrix metalloproteinase-16 [Homo sapiens].           69   1e-11
Alignment   gi|NP_004986.1| matrix metalloproteinase-14 preproprotein [Homo...    68   1e-11
Alignment   gi|NP_002419.1| matrix metalloproteinase-15 preproprotein [Homo...    63   5e-10
Alignment   gi|NP_005931.2| stromelysin-3 preproprotein [Homo sapiens].           63   5e-10

>ref|NP_000629.3| vitronectin precursor [Homo sapiens].
          Length = 478

 Score =  436 bits (1122), Expect = e-122
 Identities = 214/304 (70%), Positives = 234/304 (76%), Gaps = 24/304 (7%)
 Frame = +2

Query: 194  DQESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQVTRGDVFLQPDDEYRAYD 373
            DQESCKGRCT+GF  ++KCQCDELCSYYQSCCTDY AECKPQVTRGDVF  P+DEY  YD
Sbjct: 20   DQESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVTRGDVFTMPEDEYTVYD 79

Query: 374  YHEETRHNTSVQEEQRIPVLLA--------KTEETPVLKPEEEAPPPG------------ 493
              EE ++N +V E+   P L +          E+TPVLKPEEEAP P             
Sbjct: 80   DGEE-KNNATVHEQVGGPSLTSDLQAQSKGNPEQTPVLKPEEEAPAPEVGASKPEGIDSR 138

Query: 494  PQTDDLGVP----EEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQD 661
            P+T   G P    EEELCSGKPFDAFT+LKNGS+FAFRG YCYELDEKAVRPGYPKLI+D
Sbjct: 139  PETLHPGRPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYPKLIRD 198

Query: 662  VWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXX 841
            VWGI+GPIDAAFTRINCQGKTYLFKGSQYWRF+DGVLDP+YPR IS+GF GI        
Sbjct: 199  VWGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAAL 258

Query: 842  XXXXHSYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQRDSWEDIFR 1021
                HSYSGRERVYFFKGKQYWEY FQ QPS+EECEGSS S VF HFA+MQRDSWEDIF 
Sbjct: 259  ALPAHSYSGRERVYFFKGKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE 318

Query: 1022 LLFW 1033
            LLFW
Sbjct: 319  LLFW 322


>ref|NP_001121182.1| proteoglycan 4 isoform D [Homo sapiens].
          Length = 1270

 Score =  120 bits (301), Expect = 2e-27
 Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
 Frame = +2

Query: 446  EETPVLKPEEEAPPPGPQTDDLGVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEK 625
            E TP +      P  G   + +   E  +C+GKP D  T L+NG++ AFRG Y + L   
Sbjct: 983  EVTPDMDYLPRVPNQGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLSPF 1042

Query: 626  AVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEG 805
            +  P   + I +VWGI  PID  FTR NC+GKT+ FK SQYWRF + + D  YP+ I +G
Sbjct: 1043 SP-PSPARRITEVWGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKG 1101

Query: 806  FKGIXXXXXXXXXXXXHSYSGRERVYFFK-GKQYWEYVFQQQPSREECEGSSPS 964
            F G+            +  +  E VYFFK G    +Y+++Q+P  ++C G  P+
Sbjct: 1102 FGGLTGQIVAALSTAKYK-NWPESVYFFKRGGSIQQYIYKQEPV-QKCPGRRPA 1153


>ref|NP_001121181.1| proteoglycan 4 isoform C [Homo sapiens].
          Length = 1311

 Score =  120 bits (301), Expect = 2e-27
 Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
 Frame = +2

Query: 446  EETPVLKPEEEAPPPGPQTDDLGVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEK 625
            E TP +      P  G   + +   E  +C+GKP D  T L+NG++ AFRG Y + L   
Sbjct: 1024 EVTPDMDYLPRVPNQGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLSPF 1083

Query: 626  AVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEG 805
            +  P   + I +VWGI  PID  FTR NC+GKT+ FK SQYWRF + + D  YP+ I +G
Sbjct: 1084 SP-PSPARRITEVWGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKG 1142

Query: 806  FKGIXXXXXXXXXXXXHSYSGRERVYFFK-GKQYWEYVFQQQPSREECEGSSPS 964
            F G+            +  +  E VYFFK G    +Y+++Q+P  ++C G  P+
Sbjct: 1143 FGGLTGQIVAALSTAKYK-NWPESVYFFKRGGSIQQYIYKQEPV-QKCPGRRPA 1194


>ref|NP_001121180.1| proteoglycan 4 isoform B [Homo sapiens].
          Length = 1363

 Score =  120 bits (301), Expect = 2e-27
 Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
 Frame = +2

Query: 446  EETPVLKPEEEAPPPGPQTDDLGVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEK 625
            E TP +      P  G   + +   E  +C+GKP D  T L+NG++ AFRG Y + L   
Sbjct: 1076 EVTPDMDYLPRVPNQGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLSPF 1135

Query: 626  AVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEG 805
            +  P   + I +VWGI  PID  FTR NC+GKT+ FK SQYWRF + + D  YP+ I +G
Sbjct: 1136 SP-PSPARRITEVWGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKG 1194

Query: 806  FKGIXXXXXXXXXXXXHSYSGRERVYFFK-GKQYWEYVFQQQPSREECEGSSPS 964
            F G+            +  +  E VYFFK G    +Y+++Q+P  ++C G  P+
Sbjct: 1195 FGGLTGQIVAALSTAKYK-NWPESVYFFKRGGSIQQYIYKQEPV-QKCPGRRPA 1246


>ref|NP_005798.2| proteoglycan 4 isoform A [Homo sapiens].
          Length = 1404

 Score =  120 bits (301), Expect = 2e-27
 Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
 Frame = +2

Query: 446  EETPVLKPEEEAPPPGPQTDDLGVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEK 625
            E TP +      P  G   + +   E  +C+GKP D  T L+NG++ AFRG Y + L   
Sbjct: 1117 EVTPDMDYLPRVPNQGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLSPF 1176

Query: 626  AVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEG 805
            +  P   + I +VWGI  PID  FTR NC+GKT+ FK SQYWRF + + D  YP+ I +G
Sbjct: 1177 SP-PSPARRITEVWGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKG 1235

Query: 806  FKGIXXXXXXXXXXXXHSYSGRERVYFFK-GKQYWEYVFQQQPSREECEGSSPS 964
            F G+            +  +  E VYFFK G    +Y+++Q+P  ++C G  P+
Sbjct: 1236 FGGLTGQIVAALSTAKYK-NWPESVYFFKRGGSIQQYIYKQEPV-QKCPGRRPA 1287


>ref|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo sapiens].
          Length = 645

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 5/169 (2%)
 Frame = +2

Query: 422 IPVLLAKTEETPVLKPEEEAP-PPGPQTDDL-GVP--EEELCSGKPFDAFTNLKNGSVFA 589
           +P L  +   +P  +  E  P PP P   D    P  +  +C G  F+    L  G +F 
Sbjct: 339 LPTLPVRRIHSPSERKHERQPRPPRPPLGDRPSTPGTKPNICDGN-FNTVA-LFRGEMFV 396

Query: 590 FRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDG 766
           F+  + + L    V+ GYP  I+  W G+   IDAA+ R +  G+   FKG +YW F + 
Sbjct: 397 FKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERAD--GRFVFFKGDKYWVFKEV 454

Query: 767 VLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
            ++P YP  + E    +              +    + YFFKG++YW Y
Sbjct: 455 TVEPGYPHSLGE----LGSCLPREGIDTALRWEPVGKTYFFKGERYWRY 499



 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
 Frame = +2

Query: 575 GSVFAFRG--LYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGK-TYLFKGSQ 745
           G  + F+G   + Y  + +A  PGYPK I    GI      AF  I+ +G  TY +KG  
Sbjct: 486 GKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQGAF--ISKEGYYTYFYKGRD 543

Query: 746 YWRFDDGVL--DPNYPREISEGFKG 814
           YW+FD+  L  +P YPR I   + G
Sbjct: 544 YWKFDNQKLSVEPGYPRNILRDWMG 568


>ref|NP_005932.2| matrix metalloproteinase-16 [Homo sapiens].
          Length = 607

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 47/171 (27%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
 Frame = +2

Query: 443 TEETPVLKPEEEAPPPGPQTDDLGVP-------------EEELCSGKPFDAFTNLKNGSV 583
           T   P + P    PP  P+ +D   P             +  +C G  F+    L+   +
Sbjct: 300 TRPLPTVPPHRSIPPADPRKNDRPKPPRPPTGRPSYPGAKPNICDGN-FNTLAILRR-EM 357

Query: 584 FAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD 760
           F F+  + + +    V  GYP  I   W G+   IDA +   N  G    FKG++YW F 
Sbjct: 358 FVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYE--NSDGNFVFFKGNKYWVFK 415

Query: 761 DGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
           D  L P YP ++     GI              +    + YFFKG +YW Y
Sbjct: 416 DTTLQPGYPHDLITLGSGIPPHGIDSAIW----WEDVGKTYFFKGDRYWRY 462



 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
 Frame = +2

Query: 551 DAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGP--IDAAFTRINCQGKT 724
           DA     +G+   F+G   +   +  ++PGYP  +  +     P  ID+A    +  GKT
Sbjct: 393 DAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDV-GKT 451

Query: 725 YLFKGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGK 898
           Y FKG +YWR+ + +  +DP YP+ I+  +KGI            + ++     YF+KGK
Sbjct: 452 YFFKGDRYWRYSEEMKTMDPGYPKPITV-WKGIPESPQGAFVHKENGFT-----YFYKGK 505

Query: 899 QYWEY 913
           +YW++
Sbjct: 506 EYWKF 510



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
 Frame = +2

Query: 575 GSVFAFRG--LYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQY 748
           G  + F+G   + Y  + K + PGYPK I    GI      AF      G TY +KG +Y
Sbjct: 449 GKTYFFKGDRYWRYSEEMKTMDPGYPKPITVWKGIPESPQGAFVHKE-NGFTYFYKGKEY 507

Query: 749 WRFDDGVL--DPNYPREISEGFKG 814
           W+F++ +L  +P YPR I + F G
Sbjct: 508 WKFNNQILKVEPGYPRSILKDFMG 531


>ref|NP_004986.1| matrix metalloproteinase-14 preproprotein [Homo sapiens].
          Length = 582

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 3/195 (1%)
 Frame = +2

Query: 338 FLQPDDEYRAYD--YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDL 511
           F+ PDD+ R     Y  E+   T +  + R       T   P +  + + P  GP     
Sbjct: 269 FVLPDDDRRGIQQLYGGESGFPTKMPPQPR-------TTSRPSVPDKPKNPTYGPN---- 317

Query: 512 GVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPID 688
                 +C G  FD    L+ G +F F+  + + +    V  GYP  I   W G+   I+
Sbjct: 318 ------ICDGN-FDTVAMLR-GEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASIN 369

Query: 689 AAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSG 868
            A+ R +  GK   FKG ++W FD+  L+P YP+ I E  +G+              +  
Sbjct: 370 TAYERKD--GKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALF----WMP 423

Query: 869 RERVYFFKGKQYWEY 913
             + YFF+G +Y+ +
Sbjct: 424 NGKTYFFRGNKYYRF 438



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
 Frame = +2

Query: 569 KNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIK-GPIDAAFTRINCQGKTYLFKGS 742
           K+G    F+G   +  DE ++ PGYPK I+++  G+    IDAA   +   GKTY F+G+
Sbjct: 375 KDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMP-NGKTYFFRGN 433

Query: 743 QYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERV--YFFKGKQYWE 910
           +Y+RF++ +  +D  YP+ I + ++GI             S+ G + V  YF+KG +YW+
Sbjct: 434 KYYRFNEELRAVDSEYPKNI-KVWEGIPESPRG-------SFMGSDEVFTYFYKGNKYWK 485

Query: 911 Y 913
           +
Sbjct: 486 F 486


>ref|NP_002419.1| matrix metalloproteinase-15 preproprotein [Homo sapiens].
          Length = 669

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 17/211 (8%)
 Frame = +2

Query: 332 DVFLQPDDEYRAYDYHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEE--EAPPPGPQTD 505
           D F  P+D+ R       T      Q  Q +P +  +    P  +P    + PPPG + +
Sbjct: 287 DNFKLPEDDLRGIQQLYGTPDGQP-QPTQPLPTVTPRRPGRPDHRPPRPPQPPPPGGKPE 345

Query: 506 ---DLGVPEEELCSGKP-----------FDAFTNLKNGSVFAFRGLYCYELDEKAVRPGY 643
                G P +   + +P           FD    L+ G +F F+G + + +    V   Y
Sbjct: 346 RPPKPGPPVQPRATERPDQYGPNICDGDFDTVAMLR-GEMFVFKGRWFWRVRHNRVLDNY 404

Query: 644 PKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIX 820
           P  I   W G+ G I AA+ R +  G+   FKG +YW F +  L+P YP+ ++    GI 
Sbjct: 405 PMPIGHFWRGLPGDISAAYERQD--GRFVFFKGDRYWLFREANLEPGYPQPLTSYGLGIP 462

Query: 821 XXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
                        +      +FF+  +YW +
Sbjct: 463 YDRIDTAIW----WEPTGHTFFFQEDRYWRF 489



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 11/190 (5%)
 Frame = +2

Query: 503  DDLGVPEEELCSGKPFD--AFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIK 676
            D+  +P      G P D  A    ++G    F+G   +   E  + PGYP+ +   +G+ 
Sbjct: 402  DNYPMPIGHFWRGLPGDISAAYERQDGRFVFFKGDRYWLFREANLEPGYPQPLTS-YGLG 460

Query: 677  GPIDAAFTRINCQ--GKTYLFKGSQYWRFDDGVL--DPNYPREISEGFKGIXXXXXXXXX 844
             P D   T I  +  G T+ F+  +YWRF++     DP YP+ IS  ++GI         
Sbjct: 461  IPYDRIDTAIWWEPTGHTFFFQEDRYWRFNEETQRGDPGYPKPISV-WQGIPASPKGAFL 519

Query: 845  XXXHSYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQR-----DSWE 1009
                +Y+     YF+KG +YW++       R   E   P  +   F   Q        W 
Sbjct: 520  SNDAAYT-----YFYKGTKYWKF----DNERLRMEPGYPKSILRDFMGCQEHVEPGPRWP 570

Query: 1010 DIFRLLFWSH 1039
            D+ R  F  H
Sbjct: 571  DVARPPFNPH 580



 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
 Frame = +2

Query: 488 PGPQTD-DLGVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVR--PGYPKLIQ 658
           P P T   LG+P + + +   ++       G  F F+    +  +E+  R  PGYPK I 
Sbjct: 451 PQPLTSYGLGIPYDRIDTAIWWEP-----TGHTFFFQEDRYWRFNEETQRGDPGYPKPIS 505

Query: 659 DVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVL--DPNYPREISEGFKG 814
              GI      AF   N    TY +KG++YW+FD+  L  +P YP+ I   F G
Sbjct: 506 VWQGIPASPKGAFLS-NDAAYTYFYKGTKYWKFDNERLRMEPGYPKSILRDFMG 558


>ref|NP_005931.2| stromelysin-3 preproprotein [Homo sapiens].
          Length = 488

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 13/193 (6%)
 Frame = +2

Query: 443 TEETPVLKPEEEAPPPGPQTDDLGVPEEEL----CSGKPFDAFTNLKNGSVFAFRGLYCY 610
           T  TP L P+      G  T+++   E +     C    FDA + ++ G +F F+  + +
Sbjct: 265 TSRTPALGPQA-----GIDTNEIAPLEPDAPPDACEAS-FDAVSTIR-GELFFFKAGFVW 317

Query: 611 ELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD--DGVLDPN 781
            L    ++PGYP L    W G+  P+DAAF   + QG  + F+G+QYW +D    VL P 
Sbjct: 318 RLRGGQLQPGYPALASRHWQGLPSPVDAAFE--DAQGHIWFFQGAQYWVYDGEKPVLGPA 375

Query: 782 YPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY------VFQQQPSREE 943
              E+     G+                 + ++YFF+G+ YW +      V    P R  
Sbjct: 376 PLTEL-----GLVRFPVHAALVWGPE---KNKIYFFRGRDYWRFHPSTRRVDSPVPRRAT 427

Query: 944 CEGSSPSDVFAHF 982
                PS++ A F
Sbjct: 428 DWRGVPSEIDAAF 440


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,785,084
Number of extensions: 1348374
Number of successful extensions: 6924
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 6775
Number of HSP's successfully gapped: 27
Length of query: 355
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 251
Effective length of database: 14,868,908
Effective search space: 3732095908
Effective search space used: 3732095908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000835
         (1065 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035837.1| vitronectin precursor [Mus musculus].                425   e-119
Alignment   gi|NP_001103616.1| proteoglycan 4 isoform 2 [Mus musculus].          157   2e-38
Alignment   gi|NP_067375.3| proteoglycan 4 isoform 1 [Mus musculus].             128   7e-30
Alignment   gi|NP_034938.3| matrix metalloproteinase-24 [Mus musculus].           71   1e-12
Alignment   gi|NP_062698.2| matrix metalloproteinase-16 precursor [Mus musc...    68   1e-11
Alignment   gi|NP_032634.3| matrix metalloproteinase-14 [Mus musculus].           67   2e-11
Alignment   gi|NP_032632.1| stromelysin-3 precursor [Mus musculus].               65   7e-11
Alignment   gi|NP_032635.1| matrix metalloproteinase-15 precursor [Mus musc...    64   2e-10
Alignment   gi|NP_001157669.1| matrix metalloproteinase-19 isoform 2 [Mus m...    57   3e-08
Alignment   gi|NP_067387.1| matrix metalloproteinase-19 isoform 1 [Mus musc...    57   3e-08

>ref|NP_035837.1| vitronectin precursor [Mus musculus].
          Length = 478

 Score =  425 bits (1092), Expect = e-119
 Identities = 208/302 (68%), Positives = 230/302 (76%), Gaps = 22/302 (7%)
 Frame = +2

Query: 194  DQESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQVTRGDVFLQPDDEYRAYD 373
            DQESCKGRCT GF+A +KCQCDELC+YYQSCC DY+ +CKPQVTRGDVF  P+D+Y +YD
Sbjct: 20   DQESCKGRCTQGFMASKKCQCDELCTYYQSCCADYMEQCKPQVTRGDVFTMPEDDYWSYD 79

Query: 374  YHEETRHNTS--VQEEQRIPV--LLAKTE----ETPVLKPEEEAPPPGPQ---------- 499
            Y EE ++NT+  VQ E   P   L  +T+     T  L PEE+   P P+          
Sbjct: 80   YVEEPKNNTNTGVQPENTSPPGDLNPRTDGTLKPTAFLDPEEQPSTPAPKVEQQEEILRP 139

Query: 500  -TDDLGVPE---EELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW 667
             T D G PE   EELCSGKPFDAFT+LKNGS+FAFRG YCYELDE AVRPGYPKLIQDVW
Sbjct: 140  DTTDQGTPEFPEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDETAVRPGYPKLIQDVW 199

Query: 668  GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXX 847
            GI+GPIDAAFTRINCQGKTYLFKGSQYWRF+DGVLDP YPR ISEGF GI          
Sbjct: 200  GIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPGYPRNISEGFSGIPDNVDAAFAL 259

Query: 848  XXHSYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQRDSWEDIFRLL 1027
              H YSGRERVYFFKGKQYWEY FQQQPS+EECEGSS S VF HFAL+QRDSWE+IF LL
Sbjct: 260  PAHRYSGRERVYFFKGKQYWEYEFQQQPSQEECEGSSLSAVFEHFALLQRDSWENIFELL 319

Query: 1028 FW 1033
            FW
Sbjct: 320  FW 321


>ref|NP_001103616.1| proteoglycan 4 isoform 2 [Mus musculus].
          Length = 423

 Score =  157 bits (396), Expect = 2e-38
 Identities = 104/307 (33%), Positives = 146/307 (47%), Gaps = 35/307 (11%)
 Frame = +2

Query: 194  DQESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQVT-RGDVF------LQPD 352
            D  SC GRC +G+  +  C CD  C +Y  CC D+   C  +++ +G  F       + D
Sbjct: 26   DLSSCAGRCGEGYSRDATCNCDYNCQHYMECCPDFKRVCTTELSCKGRCFESFARGRECD 85

Query: 353  DEYRAYDYHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPG----------PQT 502
             + +   Y +      S  EE +        + TP  KP  E P             P T
Sbjct: 86   CDSQCKQYGKCCADYDSFCEEVK-----DNKKNTPKKKPNPEPPAVDEAGSGLDNAIPGT 140

Query: 503  DDLG-------------VPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGY 643
            D L                E  LC+GKP D  T L+NG++ AFRG Y + L+     P  
Sbjct: 141  DLLAGRLNQGININPMLSDETNLCNGKPVDGLTTLRNGTLVAFRGHYFWMLNPFRP-PSP 199

Query: 644  PKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXX 823
            P+ I +VWGI  PID  FTR NC+GKT+ FK SQYWRF + V+DP YP++I +GF G+  
Sbjct: 200  PRRITEVWGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDVVDPGYPKQIVKGFGGLTG 259

Query: 824  XXXXXXXXXXHSYSGR-ERVYFFK-GKQYWEYVFQQQPSREECEGSSPS---DVFAHFAL 988
                        Y  R E VYFFK G    +Y ++Q+P + +C G  P+    V+   A 
Sbjct: 260  KIVAALSIA--KYKDRPESVYFFKRGGNIQQYTYKQEPMK-KCTGRRPAINYSVYGEAAQ 316

Query: 989  MQRDSWE 1009
            ++R  +E
Sbjct: 317  VRRRRFE 323


>ref|NP_067375.3| proteoglycan 4 isoform 1 [Mus musculus].
          Length = 1221

 Score =  128 bits (322), Expect = 7e-30
 Identities = 71/168 (42%), Positives = 98/168 (58%), Gaps = 5/168 (2%)
 Frame = +2

Query: 521  EEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFT 700
            E  LC+GKP D  T L+NG++ AFRG Y + L+     P  P+ I +VWGI  PID  FT
Sbjct: 958  ETNLCNGKPVDGLTTLRNGTLVAFRGHYFWMLNPFRP-PSPPRRITEVWGIPSPIDTVFT 1016

Query: 701  RINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGR-ER 877
            R NC+GKT+ FK SQYWRF + V+DP YP++I +GF G+              Y  R E 
Sbjct: 1017 RCNCEGKTFFFKDSQYWRFTNDVVDPGYPKQIVKGFGGLTGKIVAALSIA--KYKDRPES 1074

Query: 878  VYFFK-GKQYWEYVFQQQPSREECEGSSPS---DVFAHFALMQRDSWE 1009
            VYFFK G    +Y ++Q+P + +C G  P+    V+   A ++R  +E
Sbjct: 1075 VYFFKRGGNIQQYTYKQEPMK-KCTGRRPAINYSVYGEAAQVRRRRFE 1121



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = +2

Query: 203 SCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECK 313
           SCKGRC + F   R+C CD  C  Y  CC DY + C+
Sbjct: 69  SCKGRCFESFARGRECDCDSQCKQYGKCCADYDSFCE 105


>ref|NP_034938.3| matrix metalloproteinase-24 [Mus musculus].
          Length = 618

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 5/169 (2%)
 Frame = +2

Query: 422 IPVLLAKTEETPVLKPEEEAP-PPGPQTDDL-GVP--EEELCSGKPFDAFTNLKNGSVFA 589
           +P L  +   +P  +  E  P PP P   D    P  +  +C G  F+    L  G +F 
Sbjct: 312 LPTLPVRRIHSPSERKHERHPRPPRPPLGDRPSTPGAKPNICDGN-FNTVA-LFRGEMFV 369

Query: 590 FRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDG 766
           F+  + + L    V+ GYP  I+  W G+   IDAA+ R +  G+   FKG +YW F + 
Sbjct: 370 FKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERAD--GRFVFFKGDKYWVFKEV 427

Query: 767 VLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
            ++P YP  + E    +              +    + YFFKG++YW Y
Sbjct: 428 TVEPGYPHSLGE----LGSCLPREGIDTALRWEPVGKTYFFKGERYWRY 472



 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
 Frame = +2

Query: 575 GSVFAFRG--LYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGK-TYLFKGSQ 745
           G  + F+G   + Y  + +A  PGYPK I    GI      AF  I+ +G  TY +KG  
Sbjct: 459 GKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQGAF--ISKEGYYTYFYKGRD 516

Query: 746 YWRFDDGVL--DPNYPREISEGFKG 814
           YW+FD+  L  +P YPR I   + G
Sbjct: 517 YWKFDNQKLSVEPGYPRNILRDWMG 541


>ref|NP_062698.2| matrix metalloproteinase-16 precursor [Mus musculus].
          Length = 607

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 47/171 (27%), Positives = 67/171 (39%), Gaps = 14/171 (8%)
 Frame = +2

Query: 443 TEETPVLKPEEEAPPPGPQTDDLGVP-------------EEELCSGKPFDAFTNLKNGSV 583
           T   P + P    PP  P+  D   P             +  +C G  F+    L+   +
Sbjct: 300 TRPLPTVPPHRSVPPADPRRHDRPKPPRPPTGRPSYPGAKPNICDGN-FNTLAILRR-EM 357

Query: 584 FAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD 760
           F F+  + + +    V  GYP  I   W G+   IDA +   N  G    FKG++YW F 
Sbjct: 358 FVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYE--NSDGNFVFFKGNKYWVFK 415

Query: 761 DGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
           D  L P YP ++     GI              +    + YFFKG +YW Y
Sbjct: 416 DTTLQPGYPHDLITLGNGIPPHGIDSAIW----WEDVGKTYFFKGDRYWRY 462



 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
 Frame = +2

Query: 551 DAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGP--IDAAFTRINCQGKT 724
           DA     +G+   F+G   +   +  ++PGYP  +  +     P  ID+A    +  GKT
Sbjct: 393 DAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGNGIPPHGIDSAIWWEDV-GKT 451

Query: 725 YLFKGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGK 898
           Y FKG +YWR+ + +  +DP YP+ I+  +KGI            + ++     YF+KGK
Sbjct: 452 YFFKGDRYWRYSEEMKTMDPGYPKPITI-WKGIPESPQGAFVHKENGFT-----YFYKGK 505

Query: 899 QYWEY 913
           +YW++
Sbjct: 506 EYWKF 510



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
 Frame = +2

Query: 575 GSVFAFRG--LYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQY 748
           G  + F+G   + Y  + K + PGYPK I    GI      AF      G TY +KG +Y
Sbjct: 449 GKTYFFKGDRYWRYSEEMKTMDPGYPKPITIWKGIPESPQGAFVHKE-NGFTYFYKGKEY 507

Query: 749 WRFDDGVL--DPNYPREISEGFKG 814
           W+F++ +L  +P YPR I + F G
Sbjct: 508 WKFNNQILKVEPGYPRSILKDFMG 531


>ref|NP_032634.3| matrix metalloproteinase-14 [Mus musculus].
          Length = 582

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 3/195 (1%)
 Frame = +2

Query: 338 FLQPDDEYRAYD--YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDL 511
           F+ PDD+ R     Y  ++   T +  + R       T   P +  + + P  GP     
Sbjct: 269 FVLPDDDRRGIQQLYGSKSGSPTKMPPQPR-------TTSRPSVPDKPKNPAYGPN---- 317

Query: 512 GVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPID 688
                 +C G  FD    L+ G +F F+  + + +    V  GYP  I   W G+   I+
Sbjct: 318 ------ICDGN-FDTVAMLR-GEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASIN 369

Query: 689 AAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSG 868
            A+ R +  GK   FKG ++W FD+  L+P YP+ I E  +G+              +  
Sbjct: 370 TAYERKD--GKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALF----WMP 423

Query: 869 RERVYFFKGKQYWEY 913
             + YFF+G +Y+ +
Sbjct: 424 NGKTYFFRGNKYYRF 438



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
 Frame = +2

Query: 569 KNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIK-GPIDAAFTRINCQGKTYLFKGS 742
           K+G    F+G   +  DE ++ PGYPK I+++  G+    IDAA   +   GKTY F+G+
Sbjct: 375 KDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMP-NGKTYFFRGN 433

Query: 743 QYWRFDD--GVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERV--YFFKGKQYWE 910
           +Y+RF++    +D  YP+ I + ++GI             S+ G + V  YF+KG +YW+
Sbjct: 434 KYYRFNEEFRAVDSEYPKNI-KVWEGIPESPRG-------SFMGSDEVFTYFYKGNKYWK 485

Query: 911 Y 913
           +
Sbjct: 486 F 486


>ref|NP_032632.1| stromelysin-3 precursor [Mus musculus].
          Length = 492

 Score = 65.5 bits (158), Expect = 7e-11
 Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 16/192 (8%)
 Frame = +2

Query: 455 PVLKPEEEAPP----PGPQTDDLGVPEEE----LCSGKPFDAFTNLKNGSVFAFRGLYCY 610
           P + P   AP      G  T+++ + E E    +C    FDA + ++ G +F F+  + +
Sbjct: 264 PQMAPTSPAPTLSSQAGTDTNEIALLEPETPPDVCETS-FDAVSTIR-GELFFFKAGFVW 321

Query: 611 ELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYP 787
            L    ++PGYP L    W G+  P+DAAF   + QG+ + F+G+QYW + DG      P
Sbjct: 322 RLRSGRLQPGYPALASRHWQGLPSPVDAAFE--DAQGQIWFFQGAQYWVY-DGEKPVLGP 378

Query: 788 REISE-GFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY------VFQQQPSREEC 946
             +S+ G +G                  + ++YFF+G  YW +      V    P R   
Sbjct: 379 APLSKLGLQGSPVHAALVWGPE------KNKIYFFRGGDYWRFHPRTQRVDNPVPRRSTD 432

Query: 947 EGSSPSDVFAHF 982
               PS++ A F
Sbjct: 433 WRGVPSEIDAAF 444


>ref|NP_032635.1| matrix metalloproteinase-15 precursor [Mus musculus].
          Length = 657

 Score = 63.5 bits (153), Expect(2) = 2e-10
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 4/154 (2%)
 Frame = +2

Query: 464 KPEEEAPPPGPQTDDLGVPEE---ELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVR 634
           +P +  PPP P+  +   P++    +C G  FD    L+ G +F F+G + + +    V 
Sbjct: 342 RPPKPGPPPQPRATER--PDQYGPNICDGN-FDTVAVLR-GEMFVFKGRWFWRVRHNRVL 397

Query: 635 PGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFK 811
             YP  I   W G+ G I AA+ R +  G    FKG++YW F +  L+P YP+ +S    
Sbjct: 398 DNYPMPIGHFWRGLPGNISAAYERQD--GHFVFFKGNRYWLFREANLEPGYPQPLSSYGT 455

Query: 812 GIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
            I              +      +FF+  +YW +
Sbjct: 456 DIPYDRIDTAIW----WEPTGHTFFFQADRYWRF 485



 Score = 20.4 bits (41), Expect(2) = 2e-10
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 379 RGDQTQHQRPRRAEDPCPAGQ 441
           R  +  HQ PR  + P P G+
Sbjct: 319 RPGRPDHQPPRPPQPPHPGGK 339


>ref|NP_001157669.1| matrix metalloproteinase-19 isoform 2 [Mus musculus].
          Length = 455

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 1/167 (0%)
 Frame = +2

Query: 416 QRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVPEEELCSGKPFDAFTNLKNGSVFAFR 595
           +R P    + EET +L        PGP  +         CSG+  DA      G  +AF+
Sbjct: 186 KRSPETRDEEEETEMLTVSPVTAKPGPMPNP--------CSGE-VDAMVLGPRGKTYAFK 236

Query: 596 GLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVL 772
           G Y + + +    PG    I  +W G+ G +DAA      + +T+ FKG++ WR+ D  +
Sbjct: 237 GDYVWTVTDSG--PGPLFQISALWEGLPGNLDAAVYSPRTR-RTHFFKGNKVWRYVDFKM 293

Query: 773 DPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
            P +P + +     +              +   ++V+ FKG  YW++
Sbjct: 294 SPGFPMKFNRVEPNLDAALY---------WPVNQKVFLFKGSGYWQW 331


>ref|NP_067387.1| matrix metalloproteinase-19 isoform 1 [Mus musculus].
          Length = 527

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 1/167 (0%)
 Frame = +2

Query: 416 QRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVPEEELCSGKPFDAFTNLKNGSVFAFR 595
           +R P    + EET +L        PGP  +         CSG+  DA      G  +AF+
Sbjct: 258 KRSPETRDEEEETEMLTVSPVTAKPGPMPNP--------CSGE-VDAMVLGPRGKTYAFK 308

Query: 596 GLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVL 772
           G Y + + +    PG    I  +W G+ G +DAA      + +T+ FKG++ WR+ D  +
Sbjct: 309 GDYVWTVTDSG--PGPLFQISALWEGLPGNLDAAVYSPRTR-RTHFFKGNKVWRYVDFKM 365

Query: 773 DPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
            P +P + +     +              +   ++V+ FKG  YW++
Sbjct: 366 SPGFPMKFNRVEPNLDAALY---------WPVNQKVFLFKGSGYWQW 403


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,963,777
Number of extensions: 1123330
Number of successful extensions: 5342
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 5209
Number of HSP's successfully gapped: 26
Length of query: 355
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 253
Effective length of database: 12,553,887
Effective search space: 3176133411
Effective search space used: 3176133411
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000835
         (1065 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999269.1| vitronectin precursor [Sus scrofa].                  581   e-166
Alignment   gi|XP_003131061.2| PREDICTED: proteoglycan 4-like [Sus scrofa].      117   1e-26
Alignment   gi|XP_003360593.1| PREDICTED: matrix metalloproteinase-24 [Sus ...    69   6e-12
Alignment   gi|XP_001926652.1| PREDICTED: matrix metalloproteinase-16 [Sus ...    69   6e-12
Alignment   gi|NP_999404.1| matrix metalloproteinase-14 precursor [Sus scro...    66   4e-11
Alignment   gi|XP_001929480.1| PREDICTED: stromelysin-3 [Sus scrofa].             64   2e-10
Alignment   gi|XP_003357310.1| PREDICTED: neutrophil collagenase-like [Sus ...    60   3e-09
Alignment   gi|XP_003129864.1| PREDICTED: neutrophil collagenase [Sus scrof...    60   3e-09
Alignment   gi|XP_003127010.2| PREDICTED: matrix metalloproteinase-15 [Sus ...    60   3e-09
Alignment   gi|XP_003126306.2| PREDICTED: matrix metalloproteinase-19 [Sus ...    58   1e-08

>ref|NP_999269.1| vitronectin precursor [Sus scrofa].
          Length = 459

 Score =  581 bits (1497), Expect = e-166
 Identities = 271/284 (95%), Positives = 271/284 (95%)
 Frame = +2

Query: 194  DQESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQVTRGDVFLQPDDEYRAYD 373
            DQESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQVTRGDVFLQPDDEYRAYD
Sbjct: 20   DQESCKGRCTDGFIAERKCQCDELCSYYQSCCTDYVAECKPQVTRGDVFLQPDDEYRAYD 79

Query: 374  YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVPEEELCSGKPFD 553
            YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVPEEELCSGKPFD
Sbjct: 80   YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDLGVPEEELCSGKPFD 139

Query: 554  AFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLF 733
            AFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLF
Sbjct: 140  AFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLF 199

Query: 734  KGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
            KGSQYWRFDDGVLDPNYPREISEGFKGI            HSYSGRERVYFFKGKQYWEY
Sbjct: 200  KGSQYWRFDDGVLDPNYPREISEGFKGIPDDVDAALALPAHSYSGRERVYFFKGKQYWEY 259

Query: 914  VFQQQPSREECEGSSPSDVFAHFALMQRDSWEDIFRLLFWSHFF 1045
            VFQQQPSREECEGSSPSDVFAHFALMQRDSWEDIFRLLFWSH F
Sbjct: 260  VFQQQPSREECEGSSPSDVFAHFALMQRDSWEDIFRLLFWSHSF 303


>ref|XP_003131061.2| PREDICTED: proteoglycan 4-like [Sus scrofa].
          Length = 752

 Score =  117 bits (293), Expect = 1e-26
 Identities = 64/150 (42%), Positives = 85/150 (56%), Gaps = 2/150 (1%)
 Frame = +2

Query: 521 EEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFT 700
           E  LC+G+P D  T L NG++ AFRG Y + L+     P  P+ I +VWGI  PID  FT
Sbjct: 490 ETNLCNGRPVDGLTTLHNGTLVAFRGHYFWMLNP-FTPPSPPRRITEVWGIPSPIDTVFT 548

Query: 701 RINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGR-ER 877
           R NC+ KT+ FK SQYWRF + + D  YP+ IS+GF G+              Y  R E 
Sbjct: 549 RCNCERKTFFFKDSQYWRFTNDIKDAGYPKLISKGFGGLNGKIVAALSIA--KYKNRPES 606

Query: 878 VYFFK-GKQYWEYVFQQQPSREECEGSSPS 964
           VYFFK G    +Y ++Q+P   +C G  P+
Sbjct: 607 VYFFKRGGSIQQYTYKQEPI-TKCTGRRPA 635


>ref|XP_003360593.1| PREDICTED: matrix metalloproteinase-24 [Sus scrofa].
          Length = 393

 Score = 68.6 bits (166), Expect = 6e-12
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 1/145 (0%)
 Frame = +2

Query: 482 PPPGPQTDDLGVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQD 661
           PP G +    G  +  +C G  F+    L  G +F F+  + + L    V+ GYP  I+ 
Sbjct: 112 PPLGDRPASPGA-KPNICDGN-FNTVA-LFRGEMFVFKDRWFWRLRNNRVQEGYPMQIEQ 168

Query: 662 VW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXX 838
            W G+   IDAA+ R +  G+   FKG +YW F +  ++P YP  + E    +       
Sbjct: 169 FWKGLPARIDAAYERAD--GRFVFFKGDKYWVFKEVTVEPGYPHSLGE----LGSCLPRE 222

Query: 839 XXXXXHSYSGRERVYFFKGKQYWEY 913
                  +    + YFFKG++YW Y
Sbjct: 223 GIDTALRWEPVGKTYFFKGERYWRY 247



 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
 Frame = +2

Query: 524 EELCSGKP--FDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGI--KGPIDA 691
           E+   G P   DA     +G    F+G   +   E  V PGYP  + ++     +  ID 
Sbjct: 167 EQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDT 226

Query: 692 AFTRINCQGKTYLFKGSQYWRFDD--GVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYS 865
           A  R    GKTY FKG +YWR+ +     DP YP+ I+  +KGI              Y+
Sbjct: 227 AL-RWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITV-WKGIPQAPQGAFISKEGYYT 284

Query: 866 GRERVYFFKGKQYWEY 913
                YF+KG+ YW++
Sbjct: 285 -----YFYKGRDYWKF 295


>ref|XP_001926652.1| PREDICTED: matrix metalloproteinase-16 [Sus scrofa].
          Length = 607

 Score = 68.6 bits (166), Expect = 6e-12
 Identities = 47/171 (27%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
 Frame = +2

Query: 443 TEETPVLKPEEEAPPPGPQTDDLGVP-------------EEELCSGKPFDAFTNLKNGSV 583
           T   P + P    PP  P+ +D   P             +  +C G  F+    L+   +
Sbjct: 300 TRPLPTVPPHRSIPPVDPRKNDRPKPPRPPTGRPSYPGAKPNICDGN-FNTLAILRR-EM 357

Query: 584 FAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFD 760
           F F+  + + +    V  GYP  I   W G+   IDA +   N  G    FKG++YW F 
Sbjct: 358 FVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYE--NSDGNFVFFKGNKYWVFK 415

Query: 761 DGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
           D  L P YP ++     GI              +    + YFFKG +YW Y
Sbjct: 416 DTTLQPGYPHDLMTLGSGIPPHGIDSAIW----WEDVGKTYFFKGDRYWRY 462



 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
 Frame = +2

Query: 551 DAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGP--IDAAFTRINCQGKT 724
           DA     +G+   F+G   +   +  ++PGYP  +  +     P  ID+A    +  GKT
Sbjct: 393 DAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLMTLGSGIPPHGIDSAIWWEDV-GKT 451

Query: 725 YLFKGSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERVYFFKGK 898
           Y FKG +YWR+ + +  +DP YP+ I+  +KGI            + ++     YF+KGK
Sbjct: 452 YFFKGDRYWRYSEEMKTMDPGYPKPITV-WKGIPESPQGAFVHKENGFT-----YFYKGK 505

Query: 899 QYWEY 913
           +YW++
Sbjct: 506 EYWKF 510



 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
 Frame = +2

Query: 575 GSVFAFRG--LYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLFKGSQY 748
           G  + F+G   + Y  + K + PGYPK I    GI      AF      G TY +KG +Y
Sbjct: 449 GKTYFFKGDRYWRYSEEMKTMDPGYPKPITVWKGIPESPQGAFVHKE-NGFTYFYKGKEY 507

Query: 749 WRFDDGVL--DPNYPREISEGFKG 814
           W+F++ +L  +P YPR I + F G
Sbjct: 508 WKFNNQILKVEPGYPRSILKDFMG 531


>ref|NP_999404.1| matrix metalloproteinase-14 precursor [Sus scrofa].
          Length = 580

 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 3/195 (1%)
 Frame = +2

Query: 338 FLQPDDEYRAYD--YHEETRHNTSVQEEQRIPVLLAKTEETPVLKPEEEAPPPGPQTDDL 511
           F+ PDD+ R     Y  E+   T +  + R       T   P +  + + P  GP     
Sbjct: 267 FVLPDDDRRGIQQLYGSESGFPTKMPPQPR-------TTSKPSVPDKPKNPTYGPN---- 315

Query: 512 GVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPID 688
                 +C G  FD    L+ G +F F+  + + + +  V  GYP  I   W G+   I+
Sbjct: 316 ------ICDGN-FDTVAMLR-GEMFVFKERWFWRVRKNQVMDGYPMPIGQFWRGLPASIN 367

Query: 689 AAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKGIXXXXXXXXXXXXHSYSG 868
            A+ R +  GK   FKG ++W FD+  L+P YP+ I E   G                +G
Sbjct: 368 TAYERKD--GKFVFFKGDKHWVFDEASLEPGYPKHIKE--LGRRLPTDKIDAALFWMPNG 423

Query: 869 RERVYFFKGKQYWEY 913
           ++  YFF+G +Y+ +
Sbjct: 424 KD--YFFRGNKYYRF 436



 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
 Frame = +2

Query: 569 KNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPID----AAFTRINCQGKTYLFK 736
           K+G    F+G   +  DE ++ PGYPK I+++ G + P D    A F   N  GK Y F+
Sbjct: 373 KDGKFVFFKGDKHWVFDEASLEPGYPKHIKEL-GRRLPTDKIDAALFWMPN--GKDYFFR 429

Query: 737 GSQYWRFDDGV--LDPNYPREISEGFKGIXXXXXXXXXXXXHSYSGRERV--YFFKGKQY 904
           G++Y+RF++ +  +D  YP+ I + ++GI             S+ G + V  YF+KG +Y
Sbjct: 430 GNKYYRFNEELRAVDSEYPKNI-KVWEGIPESPRG-------SFMGSDEVFTYFYKGNKY 481

Query: 905 WEY 913
           W++
Sbjct: 482 WKF 484


>ref|XP_001929480.1| PREDICTED: stromelysin-3 [Sus scrofa].
          Length = 491

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 18/194 (9%)
 Frame = +2

Query: 455 PVLKPEEEAPPPGPQTDDLGVPEEELCSGKP----------FDAFTNLKNGSVFAFRGLY 604
           P L P   +P  G +    GV   E+   +P          FDA   ++ G +F F+  +
Sbjct: 263 PQLAPTSGSPDLGHRA---GVDTNEIAPLEPDTLPDACQVSFDAVATIR-GELFFFKAGF 318

Query: 605 CYELDEKAVRPGYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPN 781
            + L    ++PGYP L    W G+  P+DAAF   + QG  + F+G+QYW + DG     
Sbjct: 319 VWRLRRGHLQPGYPALASRHWQGLPSPVDAAFE--DAQGHIWFFQGAQYWVY-DGEKPAL 375

Query: 782 YPREISE-GFKGIXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY------VFQQQPSRE 940
            P  +SE G  G                  + +VYFF+G  YW +      V    P R 
Sbjct: 376 GPAPLSELGLPGSPVHAALVWGPE------KNKVYFFRGGDYWRFHPSTHRVDSPVPRRA 429

Query: 941 ECEGSSPSDVFAHF 982
                 PS++ A F
Sbjct: 430 TDWRGVPSEIDAAF 443


>ref|XP_003357310.1| PREDICTED: neutrophil collagenase-like [Sus scrofa].
          Length = 468

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
 Frame = +2

Query: 554 AFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLF 733
           A+ +     VF F+G   + L    ++ GYPK I + +G    + A    ++ +GKTY F
Sbjct: 335 AYEDSDKDLVFVFKGNKYWALSGYDIQQGYPKSISN-YGFPSSVQAIDAAVSYRGKTYFF 393

Query: 734 KGSQYWRFDD--GVLDPNYPREISEGFKGI 817
             +Q+WR+DD    +DP YP+  +  F+GI
Sbjct: 394 VNNQFWRYDDQRQSMDPGYPKSTASTFQGI 423


>ref|XP_003129864.1| PREDICTED: neutrophil collagenase [Sus scrofa].
          Length = 468

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
 Frame = +2

Query: 554 AFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIKGPIDAAFTRINCQGKTYLF 733
           A+ +     VF F+G   + L    ++ GYPK I + +G    + A    ++ +GKTY F
Sbjct: 335 AYEDSDKDLVFVFKGNKYWALSGYDIQQGYPKSISN-YGFPSSVQAIDAAVSYRGKTYFF 393

Query: 734 KGSQYWRFDD--GVLDPNYPREISEGFKGI 817
             +Q+WR+DD    +DP YP+  +  F+GI
Sbjct: 394 VNNQFWRYDDQRQSMDPGYPKSTASTFQGI 423


>ref|XP_003127010.2| PREDICTED: matrix metalloproteinase-15 [Sus scrofa].
          Length = 819

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 6/153 (3%)
 Frame = +2

Query: 473 EEAPPPGPQTDDLGVPEEE-----LCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVRP 637
           E  P PGP          +     +C G  FD    L+ G +F F+G + + +    V  
Sbjct: 489 ERPPKPGPPAQPRATERPDQYGPNICDGD-FDTVAMLR-GEMFVFKGRWFWRVRHNRVLD 546

Query: 638 GYPKLIQDVW-GIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNYPREISEGFKG 814
            YP  I   W G+   I AA+ R +  G+   FKG +YW F +  L+P YP+ ++    G
Sbjct: 547 NYPMPIGHFWRGLPSDISAAYERQD--GRFVFFKGDRYWLFREANLEPGYPQPLTSYGLG 604

Query: 815 IXXXXXXXXXXXXHSYSGRERVYFFKGKQYWEY 913
           I              +      +FF+  +YW +
Sbjct: 605 IPYDRIDTAIW----WEPTGHTFFFQEDRYWRF 633



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 11/184 (5%)
 Frame = +2

Query: 503  DDLGVPEEELCSGKPFD--AFTNLKNGSVFAFRGLYCYELDEKAVRPGYPKLIQDVWGIK 676
            D+  +P      G P D  A    ++G    F+G   +   E  + PGYP+ +   +G+ 
Sbjct: 546  DNYPMPIGHFWRGLPSDISAAYERQDGRFVFFKGDRYWLFREANLEPGYPQPLTS-YGLG 604

Query: 677  GPIDAAFTRINCQ--GKTYLFKGSQYWRFDDGVL--DPNYPREISEGFKGIXXXXXXXXX 844
             P D   T I  +  G T+ F+  +YWRF++     DP YP+ IS  ++GI         
Sbjct: 605  IPYDRIDTAIWWEPTGHTFFFQEDRYWRFNEDTQRGDPGYPKPISV-WQGIPASPKGAFL 663

Query: 845  XXXHSYSGRERVYFFKGKQYWEYVFQQQPSREECEGSSPSDVFAHFALMQR-----DSWE 1009
                +Y+     YF+KG +YW++       R   E   P  +   F   Q        W 
Sbjct: 664  SNDAAYT-----YFYKGTKYWKF----DNERLRMEPGYPKSILRDFMGCQEHVEPGPRWP 714

Query: 1010 DIFR 1021
            D+ R
Sbjct: 715  DVAR 718



 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
 Frame = +2

Query: 488 PGPQTD-DLGVPEEELCSGKPFDAFTNLKNGSVFAFRGLYCYELDEKAVR--PGYPKLIQ 658
           P P T   LG+P + + +   ++       G  F F+    +  +E   R  PGYPK I 
Sbjct: 595 PQPLTSYGLGIPYDRIDTAIWWEP-----TGHTFFFQEDRYWRFNEDTQRGDPGYPKPIS 649

Query: 659 DVWGIKGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVL--DPNYPREISEGFKG 814
              GI      AF   N    TY +KG++YW+FD+  L  +P YP+ I   F G
Sbjct: 650 VWQGIPASPKGAFLS-NDAAYTYFYKGTKYWKFDNERLRMEPGYPKSILRDFMG 702


>ref|XP_003126306.2| PREDICTED: matrix metalloproteinase-19 [Sus scrofa].
          Length = 539

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 58/212 (27%), Positives = 86/212 (40%), Gaps = 48/212 (22%)
 Frame = +2

Query: 416 QRIPVLLAKTEET--PVLKPEEEAPPPGPQTDDLGVPEEELCSGKPFDAFTNLKNGSVFA 589
           ++IP +  + EET  P + P    PPP P            CSG+  DA      G  +A
Sbjct: 257 KKIPEMEDEEEETELPTVPPVPTQPPPMPDP----------CSGE-LDAIMLGPRGKTYA 305

Query: 590 FRGLYCYELDEKAVRPGYPKLIQDVW-GIKGPIDAAF----------------------- 697
           F+G Y + + +  + P +   +  +W G+ G +DAA                        
Sbjct: 306 FKGNYVWTVTDSGLGPLFQ--VSALWEGLPGNLDAAVYSPRTQWIHFFKGDKVWRYVNFK 363

Query: 698 ------TRIN-------------CQGKTYLFKGSQYWRFDD-GVLD-PNYPREISEGFKG 814
                  R+N                K +LFKGS YW++D+   +D  +YP+ I   F G
Sbjct: 364 MSPGFPKRLNRVEPNLDAALYWPLNQKVFLFKGSGYWQWDELAQMDFSSYPKPIKRLFTG 423

Query: 815 IXXXXXXXXXXXXHSYSGRE-RVYFFKGKQYW 907
           +             + S R+ RVYFFKGKQYW
Sbjct: 424 VPDQPSA-------AMSWRDGRVYFFKGKQYW 448


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,611,931
Number of extensions: 860087
Number of successful extensions: 4459
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4367
Number of HSP's successfully gapped: 21
Length of query: 355
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,854,232
Effective search space: 2257829160
Effective search space used: 2257829160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000835
         (1065 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr18                                                         545   e-152
Sscrofa_Chr12                                                         521   e-145

>Sscrofa_Chr18 
||          Length = 61220071

 Score =  545 bits (275), Expect = e-152
 Identities = 278/279 (99%)
 Strand = Plus / Minus

                                                                        
Query: 319  agtgactcgcggggatgtattccttcagccagatgatgagtacagggcctatgactacca 378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7996 agtgactcgcggggatgtattccttcagccagatgatgagtacagggcctatgactacca 7937

                                                                        
Query: 379  cgaggagaccagacacaacaccagcgtccaagaagagcagaggatccctgtcctgctggc 438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7936 cgaggagaccagacacaacaccagcgtccaagaagagcagaggatccctgtcctgctggc 7877

                                                                        
Query: 439  caagactgaagagactccggttctgaaacctgaggaagaggccccaccacctgggcctca 498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7876 caagactgaagagactccggttctgaaacctgaggaagaggccccaccacctgggcctca 7817

                                                                        
Query: 499  gactgatgatctaggggtccctgaggaagagctgtgcagtgggaaaccctttgatgcctt 558
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7816 gactgatgatctaggggtctctgaggaagagctgtgcagtgggaaaccctttgatgcctt 7757

                                                   
Query: 559  caccaacctcaagaacggttccgtctttgccttccgagg 597
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 7756 caccaacctcaagaacggttccgtctttgccttccgagg 7718



 Score =  389 bits (196), Expect = e-105
 Identities = 199/200 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctggagcttgagcaaacagagcagtagaaaaggcaactcctcttctctggttccctcatc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8491 ctggagcttgagcaaacagagcagtagaaaaggcaactcctcttctctggttccctcatc 8432

                                                                        
Query: 61   catgacctctcatctctctgtcccttcctcaggcatcagaacctagtttaccagacgtga 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8431 catgacctctcatctctctgtcccttcctcaggcatcagaacctagtttaccaggcgtga 8372

                                                                        
Query: 121  ggccggaggtgctgccatggcacccctgaggccccttctgatgctggccctgctggcatg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8371 ggccggaggtgctgccatggcacccctgaggccccttctgatgctggccctgctggcatg 8312

                                
Query: 181  ggttgctctggctgaccaag 200
            ||||||||||||||||||||
Sbjct: 8311 ggttgctctggctgaccaag 8292



 Score =  317 bits (160), Expect = 7e-84
 Identities = 160/160 (100%)
 Strand = Plus / Minus

                                                                        
Query: 735  agggtagtcagtactggcgctttgatgatggtgtcctggaccccaattacccccgcgaga 794
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7250 agggtagtcagtactggcgctttgatgatggtgtcctggaccccaattacccccgcgaga 7191

                                                                        
Query: 795  tctctgaaggcttcaagggtattccggacgatgtggatgcagccttggccctgccggctc 854
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7190 tctctgaaggcttcaagggtattccggacgatgtggatgcagccttggccctgccggctc 7131

                                                    
Query: 855  atagctacagtggccgggagcgggtctacttcttcaaagg 894
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7130 atagctacagtggccgggagcgggtctacttcttcaaagg 7091



 Score =  297 bits (150), Expect = 6e-78
 Identities = 153/154 (99%)
 Strand = Plus / Minus

                                                                        
Query: 892  agggaaacagtactgggagtatgtgttccagcagcagcccagtcgagaggagtgcgaagg 951
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6955 agggaaacagtactgggagtatgtgttccagcagcagcccagtcgagaggagtgcgaagg 6896

                                                                        
Query: 952  cagctccccgtcggacgtctttgcacactttgccctgatgcagcgggacagctgggagga 1011
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6895 cagctccccgtcggacgtctttgcacactttgccctgatgcagcgggacagctgggagga 6836

                                              
Query: 1012 catcttcagacttctcttctggagccatttcttt 1045
            ||||||||||||||||||||||||||||| ||||
Sbjct: 6835 catcttcagacttctcttctggagccattccttt 6802



 Score =  283 bits (143), Expect = 1e-73
 Identities = 143/143 (100%)
 Strand = Plus / Minus

                                                                        
Query: 595  agggctgtactgctatgagctggatgaaaaggcagtgaggcctgggtaccccaagctcat 654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7644 agggctgtactgctatgagctggatgaaaaggcagtgaggcctgggtaccccaagctcat 7585

                                                                        
Query: 655  ccaagatgtctggggcatcaagggccccattgatgccgccttcacccgcatcaactgtca 714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7584 ccaagatgtctggggcatcaagggccccattgatgccgccttcacccgcatcaactgtca 7525

                                   
Query: 715  ggggaagacctacctcttcaagg 737
            |||||||||||||||||||||||
Sbjct: 7524 ggggaagacctacctcttcaagg 7502



 Score =  226 bits (114), Expect = 2e-56
 Identities = 120/122 (98%)
 Strand = Plus / Minus

                                                                        
Query: 199  agagtcgtgcaagggccgctgcacagacggcttcattgccgaaaggaagtgtcagtgtga 258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8192 agagtcgtgcaagggccgctgcacagacggcttcattgccgaaaggaagtgtcagtgtga 8133

                                                                        
Query: 259  cgagctgtgctcttactaccagagctgctgcactgactacgtggccgagtgcaagcccca 318
            ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 8132 cgagctgtgctcttactaccagagctgctgcgccgactacgtggccgagtgcaagcccca 8073

              
Query: 319  ag 320
            ||
Sbjct: 8072 ag 8071


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  521 bits (263), Expect = e-145
 Identities = 276/279 (98%), Gaps = 1/279 (0%)
 Strand = Plus / Minus

                                                                            
Query: 319      agtgactcgcggggatgtattccttcagccagatgatgagtacagggcctatgactacca 378
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 46601488 agtgactcgcggggatgtat-ccttcagccagatgatgagtacagggcctatgactacca 46601430

                                                                            
Query: 379      cgaggagaccagacacaacaccagcgtccaagaagagcagaggatccctgtcctgctggc 438
                ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 46601429 cgaggagaccagacacaacaccagcgtccaagaagagccaaggatccctgtcctgctggc 46601370

                                                                            
Query: 439      caagactgaagagactccggttctgaaacctgaggaagaggccccaccacctgggcctca 498
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601369 caagactgaagagactccggttctgaaacctgaggaagaggccccaccacctgggcctca 46601310

                                                                            
Query: 499      gactgatgatctaggggtccctgaggaagagctgtgcagtgggaaaccctttgatgcctt 558
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601309 gactgatgatctaggggtccctgaggaagagctgtgcagtgggaaaccctttgatgcctt 46601250

                                                       
Query: 559      caccaacctcaagaacggttccgtctttgccttccgagg 597
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 46601249 caccaacctcaagaacggttccgtctttgccttccgagg 46601211



 Score =  396 bits (200), Expect = e-108
 Identities = 200/200 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        ctggagcttgagcaaacagagcagtagaaaaggcaactcctcttctctggttccctcatc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601983 ctggagcttgagcaaacagagcagtagaaaaggcaactcctcttctctggttccctcatc 46601924

                                                                            
Query: 61       catgacctctcatctctctgtcccttcctcaggcatcagaacctagtttaccagacgtga 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601923 catgacctctcatctctctgtcccttcctcaggcatcagaacctagtttaccagacgtga 46601864

                                                                            
Query: 121      ggccggaggtgctgccatggcacccctgaggccccttctgatgctggccctgctggcatg 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601863 ggccggaggtgctgccatggcacccctgaggccccttctgatgctggccctgctggcatg 46601804

                                    
Query: 181      ggttgctctggctgaccaag 200
                ||||||||||||||||||||
Sbjct: 46601803 ggttgctctggctgaccaag 46601784



 Score =  317 bits (160), Expect = 7e-84
 Identities = 160/160 (100%)
 Strand = Plus / Minus

                                                                            
Query: 735      agggtagtcagtactggcgctttgatgatggtgtcctggaccccaattacccccgcgaga 794
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46600743 agggtagtcagtactggcgctttgatgatggtgtcctggaccccaattacccccgcgaga 46600684

                                                                            
Query: 795      tctctgaaggcttcaagggtattccggacgatgtggatgcagccttggccctgccggctc 854
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46600683 tctctgaaggcttcaagggtattccggacgatgtggatgcagccttggccctgccggctc 46600624

                                                        
Query: 855      atagctacagtggccgggagcgggtctacttcttcaaagg 894
                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 46600623 atagctacagtggccgggagcgggtctacttcttcaaagg 46600584



 Score =  297 bits (150), Expect = 6e-78
 Identities = 153/154 (99%)
 Strand = Plus / Minus

                                                                            
Query: 892      agggaaacagtactgggagtatgtgttccagcagcagcccagtcgagaggagtgcgaagg 951
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46600448 agggaaacagtactgggagtatgtgttccagcagcagcccagtcgagaggagtgcgaagg 46600389

                                                                            
Query: 952      cagctccccgtcggacgtctttgcacactttgccctgatgcagcgggacagctgggagga 1011
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46600388 cagctccccgtcggacgtctttgcacactttgccctgatgcagcgggacagctgggagga 46600329

                                                  
Query: 1012     catcttcagacttctcttctggagccatttcttt 1045
                ||||||||||||||||||||||||||||| ||||
Sbjct: 46600328 catcttcagacttctcttctggagccattccttt 46600295



 Score =  283 bits (143), Expect = 1e-73
 Identities = 143/143 (100%)
 Strand = Plus / Minus

                                                                            
Query: 595      agggctgtactgctatgagctggatgaaaaggcagtgaggcctgggtaccccaagctcat 654
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601137 agggctgtactgctatgagctggatgaaaaggcagtgaggcctgggtaccccaagctcat 46601078

                                                                            
Query: 655      ccaagatgtctggggcatcaagggccccattgatgccgccttcacccgcatcaactgtca 714
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601077 ccaagatgtctggggcatcaagggccccattgatgccgccttcacccgcatcaactgtca 46601018

                                       
Query: 715      ggggaagacctacctcttcaagg 737
                |||||||||||||||||||||||
Sbjct: 46601017 ggggaagacctacctcttcaagg 46600995



 Score =  234 bits (118), Expect = 8e-59
 Identities = 121/122 (99%)
 Strand = Plus / Minus

                                                                            
Query: 199      agagtcgtgcaagggccgctgcacagacggcttcattgccgaaaggaagtgtcagtgtga 258
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46601684 agagtcgtgcaagggccgctgcacagacggcttcattgccgaaaggaagtgtcagtgtga 46601625

                                                                            
Query: 259      cgagctgtgctcttactaccagagctgctgcactgactacgtggccgagtgcaagcccca 318
                ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 46601624 cgagctgtgctcttactaccagagctgctgcgctgactacgtggccgagtgcaagcccca 46601565

                  
Query: 319      ag 320
                ||
Sbjct: 46601564 ag 46601563


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,903,781
Number of extensions: 193
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 12
Length of query: 1065
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1044
Effective length of database: 2,808,413,156
Effective search space: 2931983334864
Effective search space used: 2931983334864
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)