Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000850
(1751 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040000.1| RNA-binding protein with multiple splicing [... 297 2e-80
Alignment gi|XP_002690918.1| PREDICTED: RNA binding protein with multiple... 208 1e-53
Alignment gi|XP_596374.4| PREDICTED: RNA binding protein with multiple sp... 208 1e-53
>ref|NP_001040000.1| RNA-binding protein with multiple splicing [Bos taurus].
Length = 219
Score = 297 bits (760), Expect = 2e-80
Identities = 151/176 (85%), Positives = 152/176 (86%)
Frame = +1
Query: 517 MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 696
MNNG KAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
Sbjct: 1 MNNGSKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 60
Query: 697 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 876
QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
Sbjct: 61 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 120
Query: 877 PNTVPQFIAREPYELTVPALYPSSPEVWXXXXXXXXXXXXXXXXXXXXXXXSLHAQ 1044
PNTVPQFI+REPYELTVPALYPSSPEVW SLHAQ
Sbjct: 121 PNTVPQFISREPYELTVPALYPSSPEVWAPYPLYPADLAPALPPPAFTYPASLHAQ 176
>ref|XP_002690918.1| PREDICTED: RNA binding protein with multiple splicing 2-like [Bos
taurus].
Length = 188
Score = 208 bits (530), Expect = 1e-53
Identities = 103/132 (78%), Positives = 115/132 (87%)
Frame = +1
Query: 565 NLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEA 744
NL++++VRTLFVSGLP+DIKPRELYLLFRPFKGYEGSLIKLTS+QPVGFV FDSR+ AEA
Sbjct: 3 NLKKKKVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEA 62
Query: 745 AKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELT 924
AKNALNGIRFDPE PQTLRLEFAKANTKMAKNKL+ TPNP+ P FIAR+PY+L
Sbjct: 63 AKNALNGIRFDPENPQTLRLEFAKANTKMAKNKLMATPNPTNAHPTLGAHFIARDPYDLM 122
Query: 925 VPALYPSSPEVW 960
AL P+SPE W
Sbjct: 123 GAALIPASPEAW 134
>ref|XP_596374.4| PREDICTED: RNA binding protein with multiple splicing 2-like [Bos
taurus].
Length = 188
Score = 208 bits (530), Expect = 1e-53
Identities = 103/132 (78%), Positives = 115/132 (87%)
Frame = +1
Query: 565 NLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEA 744
NL++++VRTLFVSGLP+DIKPRELYLLFRPFKGYEGSLIKLTS+QPVGFV FDSR+ AEA
Sbjct: 3 NLKKKKVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEA 62
Query: 745 AKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELT 924
AKNALNGIRFDPE PQTLRLEFAKANTKMAKNKL+ TPNP+ P FIAR+PY+L
Sbjct: 63 AKNALNGIRFDPENPQTLRLEFAKANTKMAKNKLMATPNPTNAHPTLGAHFIARDPYDLM 122
Query: 925 VPALYPSSPEVW 960
AL P+SPE W
Sbjct: 123 GAALIPASPEAW 134
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,563,468
Number of extensions: 1545587
Number of successful extensions: 7977
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7880
Number of HSP's successfully gapped: 3
Length of query: 583
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 475
Effective length of database: 14,107,870
Effective search space: 6701238250
Effective search space used: 6701238250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000850
(1751 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532815.2| PREDICTED: similar to RNA-binding protein with ... 256 4e-68
Alignment gi|XP_853385.1| PREDICTED: similar to RNA binding protein with ... 204 2e-52
>ref|XP_532815.2| PREDICTED: similar to RNA-binding protein with multiple splicing
(RBP-MS) [Canis familiaris].
Length = 306
Score = 256 bits (655), Expect = 4e-68
Identities = 131/158 (82%), Positives = 133/158 (84%)
Frame = +1
Query: 574 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKN 753
+ VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKN
Sbjct: 130 KRSVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKN 189
Query: 754 ALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPA 933
ALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPA
Sbjct: 190 ALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPA 249
Query: 934 LYPSSPEVWXXXXXXXXXXXXXXXXXXXXXXXSLHAQV 1047
LYPSSPEVW SLHAQ+
Sbjct: 250 LYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQM 287
>ref|XP_853385.1| PREDICTED: similar to RNA binding protein with multiple splicing 2
[Canis familiaris].
Length = 246
Score = 204 bits (519), Expect = 2e-52
Identities = 102/129 (79%), Positives = 111/129 (86%)
Frame = +1
Query: 574 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKN 753
E +VRTLFVSGLP+DIKPRELYLLFRPFKGYEGSLIKLTS+QPVGFV FDSR+ AEAAKN
Sbjct: 63 EGQVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEAAKN 122
Query: 754 ALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPA 933
ALNGIRFDPE PQTLRLEFAKANTKMAKNKL+ TPNP+ P FIAR+PY+L A
Sbjct: 123 ALNGIRFDPENPQTLRLEFAKANTKMAKNKLMATPNPTNAHPALGAHFIARDPYDLMGAA 182
Query: 934 LYPSSPEVW 960
L P+SPE W
Sbjct: 183 LIPASPEAW 191
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,837,067
Number of extensions: 1533820
Number of successful extensions: 8594
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8486
Number of HSP's successfully gapped: 2
Length of query: 583
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 475
Effective length of database: 15,274,216
Effective search space: 7255252600
Effective search space used: 7255252600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000850
(1751 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008711.1| RNA-binding protein with multiple splicing i... 299 6e-81
Alignment gi|NP_001008710.1| RNA-binding protein with multiple splicing i... 299 6e-81
Alignment gi|NP_006858.1| RNA-binding protein with multiple splicing isof... 299 6e-81
Alignment gi|NP_001008712.1| RNA-binding protein with multiple splicing i... 298 8e-81
Alignment gi|NP_919248.1| RNA-binding protein with multiple splicing 2 [H... 207 3e-53
>ref|NP_001008711.1| RNA-binding protein with multiple splicing isoform B [Homo sapiens].
Length = 204
Score = 299 bits (765), Expect = 6e-81
Identities = 152/177 (85%), Positives = 154/177 (87%)
Frame = +1
Query: 517 MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 696
MNNGGKAEKENTP+EANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
Sbjct: 1 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 60
Query: 697 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 876
QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
Sbjct: 61 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 120
Query: 877 PNTVPQFIAREPYELTVPALYPSSPEVWXXXXXXXXXXXXXXXXXXXXXXXSLHAQV 1047
PNTVPQFIAREPYELTVPALYPSSPEVW SLHAQ+
Sbjct: 121 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQL 177
>ref|NP_001008710.1| RNA-binding protein with multiple splicing isoform A [Homo sapiens].
Length = 196
Score = 299 bits (765), Expect = 6e-81
Identities = 152/177 (85%), Positives = 154/177 (87%)
Frame = +1
Query: 517 MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 696
MNNGGKAEKENTP+EANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
Sbjct: 1 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 60
Query: 697 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 876
QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
Sbjct: 61 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 120
Query: 877 PNTVPQFIAREPYELTVPALYPSSPEVWXXXXXXXXXXXXXXXXXXXXXXXSLHAQV 1047
PNTVPQFIAREPYELTVPALYPSSPEVW SLHAQ+
Sbjct: 121 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQM 177
>ref|NP_006858.1| RNA-binding protein with multiple splicing isoform A [Homo sapiens].
Length = 196
Score = 299 bits (765), Expect = 6e-81
Identities = 152/177 (85%), Positives = 154/177 (87%)
Frame = +1
Query: 517 MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 696
MNNGGKAEKENTP+EANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
Sbjct: 1 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 60
Query: 697 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 876
QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
Sbjct: 61 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 120
Query: 877 PNTVPQFIAREPYELTVPALYPSSPEVWXXXXXXXXXXXXXXXXXXXXXXXSLHAQV 1047
PNTVPQFIAREPYELTVPALYPSSPEVW SLHAQ+
Sbjct: 121 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQM 177
>ref|NP_001008712.1| RNA-binding protein with multiple splicing isoform C [Homo sapiens].
Length = 219
Score = 298 bits (764), Expect = 8e-81
Identities = 152/176 (86%), Positives = 153/176 (86%)
Frame = +1
Query: 517 MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 696
MNNGGKAEKENTP+EANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
Sbjct: 1 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 60
Query: 697 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 876
QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
Sbjct: 61 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 120
Query: 877 PNTVPQFIAREPYELTVPALYPSSPEVWXXXXXXXXXXXXXXXXXXXXXXXSLHAQ 1044
PNTVPQFIAREPYELTVPALYPSSPEVW SLHAQ
Sbjct: 121 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQ 176
>ref|NP_919248.1| RNA-binding protein with multiple splicing 2 [Homo sapiens].
Length = 209
Score = 207 bits (526), Expect = 3e-53
Identities = 105/146 (71%), Positives = 116/146 (79%)
Frame = +1
Query: 523 NGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP 702
+GG + EEEVRTLFVSGLP+DIKPRELYLLFRPFKGYEGSLIKLT++QP
Sbjct: 10 HGGSTGTGSGAGSGGALEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTARQP 69
Query: 703 VGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPN 882
VGFV FDSR+ AEAAKNALNGIRFDPE PQTLRLEFAKANTKMAK+KL+ TPNPS P
Sbjct: 70 VGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLMATPNPSNVHPA 129
Query: 883 TVPQFIAREPYELTVPALYPSSPEVW 960
FIAR+PY+L AL P+SPE W
Sbjct: 130 LGAHFIARDPYDLMGAALIPASPEAW 155
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,474,768
Number of extensions: 1489681
Number of successful extensions: 7737
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7658
Number of HSP's successfully gapped: 5
Length of query: 583
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 475
Effective length of database: 14,737,052
Effective search space: 7000099700
Effective search space used: 7000099700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000850
(1751 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001036139.1| RNA-binding protein with multiple splicing i... 295 1e-80
Alignment gi|NP_062707.1| RNA-binding protein with multiple splicing isof... 295 1e-80
Alignment gi|NP_001036140.1| RNA-binding protein with multiple splicing i... 295 6e-80
Alignment gi|NP_082306.2| RNA-binding protein with multiple splicing 2 [M... 204 1e-52
Alignment gi|XP_001477472.1| PREDICTED: RNA-binding protein with multiple... 112 1e-24
Alignment gi|XP_003086536.1| PREDICTED: RNA-binding protein with multiple... 112 1e-24
>ref|NP_001036139.1| RNA-binding protein with multiple splicing isoform 2 [Mus
musculus].
Length = 197
Score = 295 bits (756), Expect(2) = 1e-80
Identities = 146/148 (98%), Positives = 147/148 (99%)
Frame = +1
Query: 517 MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 696
MN GGKAEKENTP+EANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
Sbjct: 1 MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 60
Query: 697 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 876
QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
Sbjct: 61 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 120
Query: 877 PNTVPQFIAREPYELTVPALYPSSPEVW 960
PNTVPQFIAREPYELTVPALYPSSPEVW
Sbjct: 121 PNTVPQFIAREPYELTVPALYPSSPEVW 148
Score = 24.6 bits (52), Expect(2) = 1e-80
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 1041 PGNLYPSATTSLTPPPVSFQTWFPRAHRTTNTSPANRATLQ 1163
P LYP+ PPP +F T+ H P + AT Q
Sbjct: 150 PYPLYPAELAPALPPPAAF-TYPASLHAQMRWIPPSEATSQ 189
>ref|NP_062707.1| RNA-binding protein with multiple splicing isoform 1 [Mus
musculus].
Length = 197
Score = 295 bits (756), Expect(2) = 1e-80
Identities = 146/148 (98%), Positives = 147/148 (99%)
Frame = +1
Query: 517 MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 696
MN GGKAEKENTP+EANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
Sbjct: 1 MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 60
Query: 697 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 876
QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
Sbjct: 61 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 120
Query: 877 PNTVPQFIAREPYELTVPALYPSSPEVW 960
PNTVPQFIAREPYELTVPALYPSSPEVW
Sbjct: 121 PNTVPQFIAREPYELTVPALYPSSPEVW 148
Score = 24.6 bits (52), Expect(2) = 1e-80
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 1041 PGNLYPSATTSLTPPPVSFQTWFPRAHRTTNTSPANRATLQ 1163
P LYP+ PPP +F T+ H P + AT Q
Sbjct: 150 PYPLYPAELAPALPPPAAF-TYPASLHAQMRWIPPSEATSQ 189
>ref|NP_001036140.1| RNA-binding protein with multiple splicing isoform 3 [Mus
musculus].
Length = 220
Score = 295 bits (756), Expect = 6e-80
Identities = 146/148 (98%), Positives = 147/148 (99%)
Frame = +1
Query: 517 MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 696
MN GGKAEKENTP+EANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
Sbjct: 1 MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 60
Query: 697 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 876
QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
Sbjct: 61 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL 120
Query: 877 PNTVPQFIAREPYELTVPALYPSSPEVW 960
PNTVPQFIAREPYELTVPALYPSSPEVW
Sbjct: 121 PNTVPQFIAREPYELTVPALYPSSPEVW 148
>ref|NP_082306.2| RNA-binding protein with multiple splicing 2 [Mus musculus].
Length = 206
Score = 204 bits (520), Expect = 1e-52
Identities = 102/129 (79%), Positives = 112/129 (86%)
Frame = +1
Query: 574 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKN 753
EEEVRTLFVSGLP+DIKPRELYLLFRPFKGYEGSLIKLTS+QPVGFV FDSR+ AEAAKN
Sbjct: 21 EEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEAAKN 80
Query: 754 ALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPA 933
ALNGIRFDPE PQTLRLEFAKANTKMAK+KL+ TPNP++ P IAR+PY+L A
Sbjct: 81 ALNGIRFDPENPQTLRLEFAKANTKMAKSKLIATPNPTSVHPALGAHLIARDPYDLMGTA 140
Query: 934 LYPSSPEVW 960
L P+SPE W
Sbjct: 141 LIPASPEAW 149
>ref|XP_001477472.1| PREDICTED: RNA-binding protein with multiple splicing 2-like [Mus
musculus].
Length = 141
Score = 112 bits (279), Expect = 1e-24
Identities = 56/81 (69%), Positives = 64/81 (79%)
Frame = +1
Query: 718 FDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQF 897
FDSR+ AEAAKNALNGIRFDPE PQTLRLEFAKANTKMAK+KL+ TPNP++
Sbjct: 4 FDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLIATPNPTSVHLALGAHL 63
Query: 898 IAREPYELTVPALYPSSPEVW 960
IAR+PY+L AL P+SPE W
Sbjct: 64 IARDPYDLMGTALIPASPEAW 84
>ref|XP_003086536.1| PREDICTED: RNA-binding protein with multiple splicing 2-like [Mus
musculus].
Length = 141
Score = 112 bits (279), Expect = 1e-24
Identities = 56/81 (69%), Positives = 64/81 (79%)
Frame = +1
Query: 718 FDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQF 897
FDSR+ AEAAKNALNGIRFDPE PQTLRLEFAKANTKMAK+KL+ TPNP++
Sbjct: 4 FDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLIATPNPTSVHLALGAHL 63
Query: 898 IAREPYELTVPALYPSSPEVW 960
IAR+PY+L AL P+SPE W
Sbjct: 64 IARDPYDLMGTALIPASPEAW 84
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,447,610
Number of extensions: 1240393
Number of successful extensions: 6184
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6124
Number of HSP's successfully gapped: 8
Length of query: 583
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 476
Effective length of database: 12,403,707
Effective search space: 5904164532
Effective search space used: 5904164532
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000850
(1751 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133441.2| PREDICTED: RNA-binding protein with multiple... 257 1e-68
Alignment gi|XP_003121510.2| PREDICTED: RNA-binding protein with multiple... 206 4e-53
Alignment gi|XP_003359550.1| PREDICTED: hypothetical protein LOC100622871... 142 6e-34
>ref|XP_003133441.2| PREDICTED: RNA-binding protein with multiple splicing-like [Sus
scrofa].
Length = 263
Score = 257 bits (657), Expect = 1e-68
Identities = 131/156 (83%), Positives = 133/156 (85%)
Frame = +1
Query: 577 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNA 756
++VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNA
Sbjct: 86 QQVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNA 145
Query: 757 LNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPAL 936
LNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPAL
Sbjct: 146 LNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPAL 205
Query: 937 YPSSPEVWXXXXXXXXXXXXXXXXXXXXXXXSLHAQ 1044
YPSSPEVW SLHAQ
Sbjct: 206 YPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQ 241
>ref|XP_003121510.2| PREDICTED: RNA-binding protein with multiple splicing 2-like [Sus
scrofa].
Length = 260
Score = 206 bits (523), Expect = 4e-53
Identities = 107/145 (73%), Positives = 116/145 (80%), Gaps = 4/145 (2%)
Frame = +1
Query: 538 EKENTPNEA----NLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPV 705
EKE P E N + VRTLFVSGLP+DIKPRELYLLFRPFKGYEGSLIKLTS+QPV
Sbjct: 61 EKEKCPEEGFEKFNAVKLWVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPV 120
Query: 706 GFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNT 885
GFV FDSR+ AEAAKNALNGIRFDPE PQTLRLEFAKANTKMAKNKL+ TPNP+ P
Sbjct: 121 GFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKNKLMATPNPTNTHPAL 180
Query: 886 VPQFIAREPYELTVPALYPSSPEVW 960
FIAR+PY+L AL P+SPE W
Sbjct: 181 GAHFIARDPYDLMGAALIPASPEAW 205
>ref|XP_003359550.1| PREDICTED: hypothetical protein LOC100622871 [Sus scrofa].
Length = 393
Score = 142 bits (358), Expect = 6e-34
Identities = 93/222 (41%), Positives = 97/222 (43%)
Frame = +3
Query: 3 FQSQPGARTQRLSGSQPRPATXXXXXXXXXXXXXXXXXXXXXXXRRLPPSLYSATSPTLG 182
FQSQPGARTQRLSGSQPRPAT RRLPPSLYSATSPTLG
Sbjct: 121 FQSQPGARTQRLSGSQPRPATPHLLLLLLSGYPSPPPSSSCYLGRRLPPSLYSATSPTLG 180
Query: 183 SLLGRASSPHPFFLPSLTPARPLQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPPQS 362
SLLGRASSPHPFFLPSLTPARPLQV RPPPQS
Sbjct: 181 SLLGRASSPHPFFLPSLTPARPLQVSLLGPDCLRPLLCPPAPSPAPSSPSHFLSRPPPQS 240
Query: 363 RRGXXXXXXXXXXXXXXXXXXXXXXXXXEKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 542
RRG EKW
Sbjct: 241 RRGTPSRSPSQAATAPAAAPAARGARGREKWASSPSPSPAPQPCPAREDREDEQRRQSRE 300
Query: 543 XXHPERGQPSGGRGPDPICQWSPSGH*TSGAVSAFQTV*GLR 668
HPERGQPSGGRG + W +G + A FQ+ G R
Sbjct: 301 GEHPERGQPSGGRG--TVRWWVRAG---TAAAGLFQSAGGWR 337
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,108,280
Number of extensions: 1085575
Number of successful extensions: 5175
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5100
Number of HSP's successfully gapped: 3
Length of query: 583
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 479
Effective length of database: 8,754,644
Effective search space: 4193474476
Effective search space used: 4193474476
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000850
(1751 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1429 0.0
>Sscrofa_Chr15
|| Length = 157681621
Score = 1429 bits (721), Expect = 0.0
Identities = 744/754 (98%)
Strand = Plus / Minus
Query: 914 atgagctcacagtgcctgcactttaccccagtagccctgaagtgtgggccccgtaccctc 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61963171 atgagctcacagtgcctgcactttaccccagtagccctgaagtgtgggccccgtaccctc 61963112
Query: 974 tgtacccagcggagttagcgcctgctctacctcctcctgctttcacctatcccgcttcac 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61963111 tgtacccagcggagttagcgcctgctctacctcctcctgctttcacctatcccgcttcac 61963052
Query: 1034 tgcatgcccaggtaatttatacccctcggccacgacttcactcannnnnnnaccggtctc 1093
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61963051 tgcatgcccaggtaatttatacccctcggccacgacttcactcacccccccaccggtctc 61962992
Query: 1094 ctttcaaacctggttccccagagcacaccgtacaactaacacctctccagctaacagagc 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61962991 ctttcaaacctggttccccagagcacaccgtacaactaacacctctccagctaacagagc 61962932
Query: 1154 caccctccagagatgaacggtcccctcccagtccagttgacactgctccaggatcagagg 1213
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61962931 caccctccagagatgaacggtcccctcccagtccacttgacactgctccaggatcagagg 61962872
Query: 1214 accatctgacagcaatgacatcacccactgcctgatgtttgcccccaacaacacctctct 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61962871 accatctgacagcaatgacatcacccactgcctgatgtttgcccccaacaacacctctct 61962812
Query: 1274 tctccttaatgatctcaccctcatattgcacatgagagactgggccccgggtacctcccc 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61962811 tctccttaatgatctcaccctcatattgcacatgagagactgggccccgggtacctcccc 61962752
Query: 1334 agctcccagccagccagagggcgtcaccagagcctagccgtgtatgccggctctggacgg 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61962751 agctcccagccagccagagggcgtcaccagagcctagccgtgtatgccggctctggacgg 61962692
Query: 1394 gctgcagagggaggcatgcactggccataggagttttgtgtctgcgtgtgttttctgtgt 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61962691 gctgcagagggaggcatgcactggccataggagttttgtgtctgcgtgtgttttctgtgt 61962632
Query: 1454 gttgagattctgctctcgtgttctgtgtgatctagtgacgaaggagaaagttggaagttt 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61962631 gttgagattctgctctcgtgttctgtgtgatctagtgacgaaggagaaagttggaagttt 61962572
Query: 1514 ctgggaggaagattatatgctatcatgcatacgtcaaaggaaagatgaagggtttctttt 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61962571 ctgggaggaagattatatgctatcatgcatacgtcaaaggaaagatgaagggtttctttt 61962512
Query: 1574 ttctatttttaagagaccttgtagaaaaggaggtacgatgtagtgtaattgtaggttaag 1633
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 61962511 ttctatttttaagagaccttgtagaaaaggaggtacgatgtactgtaattgtaggttaag 61962452
Query: 1634 gtggaggtgtctctcctgaccagctttctttctt 1667
|||||||||||||| |||||||||||||||||||
Sbjct: 61962451 gtggaggtgtctcttctgaccagctttctttctt 61962418
Score = 513 bits (259), Expect = e-142
Identities = 259/259 (100%)
Strand = Plus / Minus
Query: 114 tccagcagctgctacctcgggcggcggctgcccccgagcctctactcagccacatcccca 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62143482 tccagcagctgctacctcgggcggcggctgcccccgagcctctactcagccacatcccca 62143423
Query: 174 actctgggctcactcctgggacgcgcgtcctcgccccatcctttcttccttccttccctc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62143422 actctgggctcactcctgggacgcgcgtcctcgccccatcctttcttccttccttccctc 62143363
Query: 234 acgcccgcccgccctctccaggtctccctcctgggtcccgattgtctccgtccccttctc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62143362 acgcccgcccgccctctccaggtctccctcctgggtcccgattgtctccgtccccttctc 62143303
Query: 294 tgtccgccggcgcctagccctgccccgtcctctccctcgcacttcctgagtcgcccgccg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62143302 tgtccgccggcgcctagccctgccccgtcctctccctcgcacttcctgagtcgcccgccg 62143243
Query: 354 ccgcagtctcgccgcggga 372
|||||||||||||||||||
Sbjct: 62143242 ccgcagtctcgccgcggga 62143224
Score = 291 bits (147), Expect = 7e-76
Identities = 150/151 (99%)
Strand = Plus / Minus
Query: 763 ggcatccgcttcgatcctgaaattccacaaacactacggctagagtttgctaaggcaaac 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62005252 ggcatccgcttcgatcctgaaattccacaaacactacggctagagtttgctaaggcaaac 62005193
Query: 823 acgaagatggccaagaacaaactagtcgggacgccaaaccctagtactcctctgcccaac 882
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 62005192 acgaagatggccaagaacaaactagtagggacgccaaaccctagtactcctctgcccaac 62005133
Query: 883 actgtacctcagttcattgccagagagccat 913
|||||||||||||||||||||||||||||||
Sbjct: 62005132 actgtacctcagttcattgccagagagccat 62005102
Score = 285 bits (144), Expect = 4e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 441 ggaagggaaaagtgggcgagctcgccctcgcccagccccgcgccccaaccctgcccggcg 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62143155 ggaagggaaaagtgggcgagctcgccctcgcccagccccgcgccccaaccctgcccggcg 62143096
Query: 501 agggaggaccgggaagatgaacaacggcggcaaagccgagaaggagaacaccccgaacga 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62143095 agggaggaccgggaagatgaacaacggcggcaaagccgagaaggagaacaccccgaacga 62143036
Query: 561 ggccaaccttcaggaggaagaggt 584
||||||||||||||||||||||||
Sbjct: 62143035 ggccaaccttcaggaggaagaggt 62143012
Score = 161 bits (81), Expect = 2e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 581 aggtccggaccctatttgtcagtggtctccctctggacattaaacctcgggagctgtatc 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62045564 aggtccggaccctatttgtcagtggtctccctctggacattaaacctcgggagctgtatc 62045505
Query: 641 tgcttttcagaccgtttaagg 661
|||||||||||||||||||||
Sbjct: 62045504 tgcttttcagaccgtttaagg 62045484
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 698 agcccgtaggttttgtcagttttgacagtcgctcagaagcagaagctgccaagaatgctt 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62040603 agcccgtaggttttgtcagttttgacagtcgctcagaagcagaagctgccaagaatgctt 62040544
Query: 758 tgaatg 763
||||||
Sbjct: 62040543 tgaatg 62040538
Score = 99.6 bits (50), Expect = 5e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 1 ctttccagagccagccaggagcgcgcactcagcggctctccgggtcccag 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62143595 ctttccagagccagccaggagcgcgcactcagcggctctccgggtcccag 62143546
Score = 81.8 bits (41), Expect = 1e-12
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 659 agggctacgaaggttctcttataaagctcacatccaagcag 699
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 62042144 agggctacgaaggttctcttataaagctcacatccaagcag 62042104
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,012,939
Number of extensions: 2411
Number of successful extensions: 2411
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2410
Number of HSP's successfully gapped: 8
Length of query: 1751
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1729
Effective length of database: 2,808,408,574
Effective search space: 4855738424446
Effective search space used: 4855738424446
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)