Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000859
(815 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001075213.1| serpin A3-5 [Bos taurus]. 274 8e-74
Alignment gi|NP_001139774.1| serpin A3-6 [Bos taurus]. 273 1e-73
Alignment gi|NP_001075181.1| SERPINA3-8 [Bos taurus]. 266 2e-71
Alignment gi|XP_001252670.1| PREDICTED: endopin 1b-like isoform 1 [Bos ta... 265 3e-71
Alignment gi|XP_001252712.1| PREDICTED: endopin 1b-like isoform 3 [Bos ta... 265 3e-71
Alignment gi|NP_001033293.1| serpin A3-3 [Bos taurus]. 264 8e-71
Alignment gi|NP_001139773.1| serpin A3-2 [Bos taurus]. 263 1e-70
Alignment gi|NP_777193.2| serpin A3-1 precursor [Bos taurus]. 261 4e-70
Alignment gi|XP_001252647.3| PREDICTED: endopin 2B-like [Bos taurus]. 252 3e-67
Alignment gi|XP_002696874.1| PREDICTED: endopin 2C-like [Bos taurus]. 251 4e-67
>ref|NP_001075213.1| serpin A3-5 [Bos taurus].
Length = 411
Score = 274 bits (700), Expect = 8e-74
Identities = 144/223 (64%), Positives = 166/223 (74%)
Frame = +3
Query: 138 VHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLS 317
VHCLP + V +KDQ ++ +H + SSNTDFAFSLYKQLAL +NV FSPLS
Sbjct: 22 VHCLPEN------VVVKDQRRRVDSH--TLASSNTDFAFSLYKQLALKNPNKNVMFSPLS 73
Query: 318 VSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGN 497
VSMALAFLSLGAR KFN+TE E +IHQGFQHLL+ LNRPSN LQL +GN
Sbjct: 74 VSMALAFLSLGARGPTLTEILEGLKFNLTEIQETQIHQGFQHLLQALNRPSNQLQLSVGN 133
Query: 498 AMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKL 677
AMF+ E LKLLDKF++DA LY SEAFPTNF+D EAAR LINDYVKNKT+GKI EL K L
Sbjct: 134 AMFVQEELKLLDKFIEDARVLYSSEAFPTNFRDSEAARSLINDYVKNKTQGKIEELFKYL 193
Query: 678 SPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTRQ*RCP 806
SP+TV VLVNYIYFKA+WKT FDP+HT ++ F VSK + P
Sbjct: 194 SPRTVLVLVNYIYFKAQWKTRFDPKHTEQAEFHVSKNKTVEVP 236
>ref|NP_001139774.1| serpin A3-6 [Bos taurus].
Length = 414
Score = 273 bits (698), Expect = 1e-73
Identities = 144/245 (58%), Positives = 171/245 (69%)
Frame = +3
Query: 72 MRAEGMSXXXXXXXXXXXXCSRVHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFA 251
MR E +S CSRVHCLP + VT ++Q +++ SSNTDFA
Sbjct: 1 MRTERVSPLLALGILVAGLCSRVHCLPEN------VTPEEQHKVTSVDGHSLASSNTDFA 54
Query: 252 FSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQ 431
FSLYKQLAL +NV FSPLSVS+ALAFLSLGA KFN+TETPE EIHQ
Sbjct: 55 FSLYKQLALKDPNKNVIFSPLSVSIALAFLSLGAHGPTVTEILEGLKFNLTETPETEIHQ 114
Query: 432 GFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAAR 611
GFQHLL+T N+PSN LQL +GNA+F+ E LKLLDKF++DA LY SEAFPTNF+D EAA+
Sbjct: 115 GFQHLLQTFNQPSNQLQLSVGNAIFVQEELKLLDKFIEDARVLYSSEAFPTNFRDPEAAK 174
Query: 612 GLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTR 791
LINDYVKNKT+GKI EL K LSP+T VLVNY+YFKA+WKT FDP+HT ++ F VS +
Sbjct: 175 SLINDYVKNKTQGKIEELFKDLSPRTELVLVNYVYFKAQWKTRFDPKHTEKTEFHVSDNK 234
Query: 792 Q*RCP 806
P
Sbjct: 235 TVEVP 239
>ref|NP_001075181.1| SERPINA3-8 [Bos taurus].
Length = 418
Score = 266 bits (680), Expect = 2e-71
Identities = 143/245 (58%), Positives = 168/245 (68%)
Frame = +3
Query: 72 MRAEGMSXXXXXXXXXXXXCSRVHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFA 251
MRAE MS CSRVHCLP + + + + T + H ++ SSNTDFA
Sbjct: 1 MRAERMSPLLALGLLVSGLCSRVHCLPENVAPEE----RHKGTSVDGH--SLASSNTDFA 54
Query: 252 FSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQ 431
FSLYKQLAL +NV FSPLS+S+ALAFLSLGAR KFN+TETPE EIHQ
Sbjct: 55 FSLYKQLALKNPNKNVIFSPLSISIALAFLSLGARGPTVTEILEGLKFNLTETPEREIHQ 114
Query: 432 GFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAAR 611
GFQHLL+ L+RPSN LQL +GN MF+ E LKLLDKF +DA LY SEAF TNF+D E A+
Sbjct: 115 GFQHLLQMLSRPSNELQLSVGNTMFVQEQLKLLDKFREDALALYTSEAFSTNFKDPETAK 174
Query: 612 GLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTR 791
LINDYVKNKT GKIV+L K L P T +LVNYIYFKA+W+TPFDP+ T +S F VSK +
Sbjct: 175 SLINDYVKNKTRGKIVDLFKDLDPLTKVILVNYIYFKAQWRTPFDPKQTYKSQFHVSKNK 234
Query: 792 Q*RCP 806
P
Sbjct: 235 TVEVP 239
>ref|XP_001252670.1| PREDICTED: endopin 1b-like isoform 1 [Bos taurus].
Length = 299
Score = 265 bits (677), Expect = 3e-71
Identities = 140/223 (62%), Positives = 162/223 (72%)
Frame = +3
Query: 138 VHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLS 317
VHCLP + V +KD+ ++ H + SSNTDFAFSLYKQLAL +NV FSPLS
Sbjct: 22 VHCLPEN------VVVKDRHRRVDGH--TLASSNTDFAFSLYKQLALKNPNKNVMFSPLS 73
Query: 318 VSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGN 497
VSMALAFLSLGAR KFN+TE E +IHQGFQHLL+ LNRPSN LQL +GN
Sbjct: 74 VSMALAFLSLGARGPTLTEILEGLKFNLTEIQETQIHQGFQHLLQALNRPSNQLQLSVGN 133
Query: 498 AMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKL 677
AMF+ E LKLLDKF++DA LY SEAFPTNF D EAA+ LINDYVK KT+GKI EL K L
Sbjct: 134 AMFVQEELKLLDKFIEDARVLYSSEAFPTNFGDPEAAKSLINDYVKKKTQGKIEELFKDL 193
Query: 678 SPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTRQ*RCP 806
SP+TV VLVNYIYFKA+WKT FDP+HT ++ F VS + P
Sbjct: 194 SPRTVLVLVNYIYFKAQWKTRFDPKHTEQAEFHVSDNKTVEVP 236
>ref|XP_001252712.1| PREDICTED: endopin 1b-like isoform 3 [Bos taurus].
Length = 299
Score = 265 bits (677), Expect = 3e-71
Identities = 140/223 (62%), Positives = 162/223 (72%)
Frame = +3
Query: 138 VHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLS 317
VHCLP + V +KD+ ++ H + SSNTDFAFSLYKQLAL +NV FSPLS
Sbjct: 22 VHCLPEN------VVVKDRHRRVDGH--TLASSNTDFAFSLYKQLALKNPNKNVMFSPLS 73
Query: 318 VSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGN 497
VSMALAFLSLGAR KFN+TE E +IHQGFQHLL+ LNRPSN LQL +GN
Sbjct: 74 VSMALAFLSLGARGPTLTEILEGLKFNLTEIQETQIHQGFQHLLQALNRPSNQLQLSVGN 133
Query: 498 AMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKL 677
AMF+ E LKLLDKF++DA LY SEAFPTNF D EAA+ LINDYVK KT+GKI EL K L
Sbjct: 134 AMFVQEELKLLDKFIEDARVLYSSEAFPTNFGDPEAAKSLINDYVKKKTQGKIEELFKDL 193
Query: 678 SPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTRQ*RCP 806
SP+TV VLVNYIYFKA+WKT FDP+HT ++ F VS + P
Sbjct: 194 SPRTVLVLVNYIYFKAQWKTRFDPKHTEQAEFHVSDNKTVEVP 236
>ref|NP_001033293.1| serpin A3-3 [Bos taurus].
Length = 411
Score = 264 bits (674), Expect = 8e-71
Identities = 138/223 (61%), Positives = 162/223 (72%)
Frame = +3
Query: 138 VHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLS 317
VHCLP + V +KD+ ++ H + SSNTDFAFSLYKQLAL +NV FSPLS
Sbjct: 22 VHCLPEN------VVVKDRHRRVDGH--TLASSNTDFAFSLYKQLALKNPNKNVMFSPLS 73
Query: 318 VSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGN 497
VSMALAFLSLGAR KFN+TE E +IHQGFQHLL+ LNRP N LQL +GN
Sbjct: 74 VSMALAFLSLGARGPTLTEILEGLKFNLTEIQETQIHQGFQHLLQALNRPRNQLQLSVGN 133
Query: 498 AMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKL 677
AMF+ E LKLLDKF++DA LY SEAFPTNF+D EAA+ LINDYVKNKT+GKI EL K L
Sbjct: 134 AMFVQEELKLLDKFIEDARVLYSSEAFPTNFRDPEAAKSLINDYVKNKTQGKIEELFKDL 193
Query: 678 SPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTRQ*RCP 806
SP+T VLVNY+YFKA+WKT FDP+HT ++ F VS + P
Sbjct: 194 SPRTELVLVNYVYFKAQWKTRFDPKHTEQAEFHVSDNKTVEVP 236
>ref|NP_001139773.1| serpin A3-2 [Bos taurus].
Length = 411
Score = 263 bits (673), Expect = 1e-70
Identities = 139/223 (62%), Positives = 161/223 (72%)
Frame = +3
Query: 138 VHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLS 317
VHCLP + V +KDQ ++ H + SSNTDFAFSLYKQLAL +NV SPLS
Sbjct: 22 VHCLPEN------VVVKDQHRRVDGH--TLASSNTDFAFSLYKQLALKNPNKNVILSPLS 73
Query: 318 VSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGN 497
VS+ALAFLSLGAR KFN+TE E EIH FQHLL+ LN+PSN LQL +GN
Sbjct: 74 VSIALAFLSLGARGSTLTEILEGLKFNLTEIQEKEIHHSFQHLLQALNQPSNQLQLSVGN 133
Query: 498 AMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKL 677
AMF+ E LKLLDKF++DA LY SEAFPTNF+D EAAR LINDYVKNKT+GKI EL K L
Sbjct: 134 AMFVQEELKLLDKFIEDAQVLYSSEAFPTNFRDSEAARSLINDYVKNKTQGKIEELFKYL 193
Query: 678 SPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTRQ*RCP 806
SP+T VLVNYIYFKA+WKTPFDP+HT ++ F VS + P
Sbjct: 194 SPRTELVLVNYIYFKAQWKTPFDPKHTEQAEFHVSDNKTVEVP 236
>ref|NP_777193.2| serpin A3-1 precursor [Bos taurus].
Length = 411
Score = 261 bits (668), Expect = 4e-70
Identities = 138/223 (61%), Positives = 160/223 (71%)
Frame = +3
Query: 138 VHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLS 317
VHCLP + V +KDQ ++ H + SSNTDFAFSLYKQL L +NV SPLS
Sbjct: 22 VHCLPEN------VVVKDQHRRVDGH--TLASSNTDFAFSLYKQLPLKNPNKNVILSPLS 73
Query: 318 VSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGN 497
VS+ALAFLSLGAR KFN+TE E EIH FQHLL+ LN+PSN LQL +GN
Sbjct: 74 VSIALAFLSLGARGSTLTEILEGLKFNLTEIQEKEIHHSFQHLLQALNQPSNQLQLSVGN 133
Query: 498 AMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKL 677
AMF+ E LKLLDKF++DA LY SEAFPTNF+D EAAR LINDYVKNKT+GKI EL K L
Sbjct: 134 AMFVQEELKLLDKFIEDAQVLYSSEAFPTNFRDSEAARSLINDYVKNKTQGKIEELFKYL 193
Query: 678 SPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTRQ*RCP 806
SP+T VLVNYIYFKA+WKTPFDP+HT ++ F VS + P
Sbjct: 194 SPRTELVLVNYIYFKAQWKTPFDPKHTEQAEFHVSDNKTVEVP 236
>ref|XP_001252647.3| PREDICTED: endopin 2B-like [Bos taurus].
Length = 417
Score = 252 bits (643), Expect = 3e-67
Identities = 135/241 (56%), Positives = 160/241 (66%)
Frame = +3
Query: 72 MRAEGMSXXXXXXXXXXXXCSRVHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFA 251
MR E MS CSRVHCLP + VT ++Q +++ SSNTDFA
Sbjct: 1 MRTERMSPLLALGLLVSGFCSRVHCLPEN------VTPEEQHKGTSVDGHSLASSNTDFA 54
Query: 252 FSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQ 431
FSLYKQLAL +NV FSPLS+S+ALAFLSLGA KFN+TETPE EIHQ
Sbjct: 55 FSLYKQLALKDPNKNVIFSPLSISIALAFLSLGAHDHTVTEILEGLKFNLTETPETEIHQ 114
Query: 432 GFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAAR 611
GFQHLL+T N+PSN LQL +GNAMF+ E LKLLDKF +DA Y SE TNF+D EAA
Sbjct: 115 GFQHLLQTFNQPSNQLQLSVGNAMFVSEELKLLDKFRKDAEAFYASEVLSTNFKDSEAAV 174
Query: 612 GLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTR 791
LIN+YVKNKT GKI +L L T +L+NYI+FKA+WKTPF+P HT ES F VS+
Sbjct: 175 KLINEYVKNKTHGKIEKLFNDLDVLTNLILLNYIFFKAQWKTPFNPNHTYESEFHVSQNE 234
Query: 792 Q 794
+
Sbjct: 235 R 235
>ref|XP_002696874.1| PREDICTED: endopin 2C-like [Bos taurus].
Length = 417
Score = 251 bits (642), Expect = 4e-67
Identities = 135/245 (55%), Positives = 162/245 (66%)
Frame = +3
Query: 72 MRAEGMSXXXXXXXXXXXXCSRVHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFA 251
MR E MS CSRVHCLP + VT ++Q +++ SSNTDFA
Sbjct: 1 MRTERMSPLLALGLLVSGLCSRVHCLPEN------VTPEEQHKVTSVDGHSLASSNTDFA 54
Query: 252 FSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQ 431
FSLYKQLAL +NV FSPLS+S+ALAFLSLGA KFN+TETPE EIHQ
Sbjct: 55 FSLYKQLALKDPNKNVIFSPLSISIALAFLSLGAHGPTVTEILEGLKFNLTETPETEIHQ 114
Query: 432 GFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAAR 611
GFQHLL+T N+PSN LQL +GNA+F+ E LKLLDKF +DA Y SE NF+D EAA
Sbjct: 115 GFQHLLQTFNQPSNQLQLSVGNAIFVPEELKLLDKFRKDAEAFYASEVLSINFKDSEAAV 174
Query: 612 GLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTR 791
LIN+YVKNKT GKI +L+ L T +L+NYI+FKA+WKTPF+P HT ES F VSK
Sbjct: 175 KLINEYVKNKTHGKIEKLLNDLDVLTNLILLNYIFFKAQWKTPFNPNHTYESEFHVSKNE 234
Query: 792 Q*RCP 806
+ + P
Sbjct: 235 RVKVP 239
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,533,318
Number of extensions: 840134
Number of successful extensions: 3636
Number of sequences better than 1.0e-05: 86
Number of HSP's gapped: 3516
Number of HSP's successfully gapped: 88
Length of query: 271
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 170
Effective length of database: 14,339,486
Effective search space: 2437712620
Effective search space used: 2437712620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000859
(815 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537546.2| PREDICTED: similar to Alpha-1-antichymotrypsin ... 249 2e-66
Alignment gi|NP_001073578.1| serpin peptidase inhibitor, clade A (alpha-1... 189 2e-48
Alignment gi|XP_538128.1| PREDICTED: similar to Thyroxine-binding globuli... 182 3e-46
Alignment gi|XP_547960.2| PREDICTED: similar to Corticosteroid-binding gl... 182 3e-46
Alignment gi|XP_537544.2| PREDICTED: similar to serine (or cysteine) prot... 178 6e-45
Alignment gi|XP_547962.2| PREDICTED: similar to serine (or cysteine) prot... 164 7e-41
Alignment gi|XP_855206.1| PREDICTED: similar to serine (or cysteine) prot... 162 3e-40
Alignment gi|XP_855210.1| PREDICTED: similar to serine (or cysteine) prot... 157 8e-39
Alignment gi|XP_537545.1| PREDICTED: similar to serine (or cysteine) prot... 148 5e-36
Alignment gi|XP_857036.1| PREDICTED: similar to Squamous cell carcinoma a... 110 1e-24
>ref|XP_537546.2| PREDICTED: similar to Alpha-1-antichymotrypsin precursor (ACT)
[Canis familiaris].
Length = 421
Score = 249 bits (636), Expect = 2e-66
Identities = 128/226 (56%), Positives = 159/226 (70%)
Frame = +3
Query: 129 CSRVHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFS 308
C VHCLP D + VT +D + + + SSNTDF SLYK+LA + +NV FS
Sbjct: 15 CPTVHCLPEGMRDPENVTQEDLPNETSENSLRLASSNTDFTLSLYKELASKSPDKNVIFS 74
Query: 309 PLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLR 488
P+S+S+ALAFLSLGA+ KFN+TE P+ EIH+GFQHLLR L++PS+ LQL
Sbjct: 75 PMSISIALAFLSLGAQGTTQTEILEGLKFNLTEIPDREIHRGFQHLLRALHQPSSELQLS 134
Query: 489 LGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELI 668
+GNAMF+ E LKLL+ FV+DA LY SEAF TNFQ+ AA LINDYVKN+T+GKIV+L+
Sbjct: 135 VGNAMFVGEQLKLLETFVEDARALYASEAFSTNFQNSAAAEKLINDYVKNRTQGKIVDLV 194
Query: 669 KKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTRQ*RCP 806
K L T VLVNYI+ KAKWKTPFDP T +S FQVSK+R + P
Sbjct: 195 KDLDLHTAVVLVNYIFLKAKWKTPFDPRDTFKSKFQVSKSRSVKVP 240
>ref|NP_001073578.1| serpin peptidase inhibitor, clade A (alpha-1 antiproteinase,
antitrypsin), member 1 [Canis lupus familiaris].
Length = 415
Score = 189 bits (481), Expect = 2e-48
Identities = 96/201 (47%), Positives = 129/201 (64%), Gaps = 3/201 (1%)
Frame = +3
Query: 192 QITKLPAHKNA---VVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXX 362
Q T P H+ A + + DFAFSLY+Q+A + N+FFSP+S++ A A LSLG +
Sbjct: 33 QETDDPEHQPACHKIAPNLADFAFSLYRQVAQESNTTNIFFSPVSIATAFAMLSLGTKGD 92
Query: 363 XXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFV 542
FN+TE E E+HQGF LL LN+P N LQL G+ +FI++ +KLL+KF+
Sbjct: 93 THTQIMQGLGFNLTERAEREVHQGFHQLLSILNQPDNQLQLTTGSGLFINDTIKLLNKFL 152
Query: 543 QDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFK 722
+D LYHSEAF NF+ E A+ IN+YV+ T+GKIV+L+K L TV LVNYI+FK
Sbjct: 153 EDVRNLYHSEAFTINFRHTEEAKKQINNYVEKGTQGKIVDLVKDLDEDTVFALVNYIFFK 212
Query: 723 AKWKTPFDPEHTIESTFQVSK 785
KW+ PF+ EHT E F V +
Sbjct: 213 GKWEKPFEVEHTTEEDFHVDE 233
>ref|XP_538128.1| PREDICTED: similar to Thyroxine-binding globulin precursor
(T4-binding globulin) [Canis familiaris].
Length = 414
Score = 182 bits (462), Expect = 3e-46
Identities = 96/224 (42%), Positives = 138/224 (61%), Gaps = 1/224 (0%)
Frame = +3
Query: 138 VHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLS 317
+HC + + K++T +K + S N DFAF+LY++ + N+FFSP+S
Sbjct: 14 LHCASSIRSEGKVITCNSPPKNATFYKMS--SINADFAFNLYRRFTVETPDRNIFFSPVS 71
Query: 318 VSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGN 497
+S ALA LS GA FN+T+TP AEI QGFQHL+ +LN P L+L++GN
Sbjct: 72 ISAALAMLSFGACYSTQIQILESLGFNLTDTPMAEIQQGFQHLICSLNIPKKELELQMGN 131
Query: 498 AMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKL 677
+FI + LK L +F+ D LY +E F T+F ++ AA+ LIN +V+ +T+G++V LI+ L
Sbjct: 132 TLFIGKQLKPLAQFLDDVKSLYATEVFSTDFSNVSAAQQLINSHVEKQTKGEVVGLIQDL 191
Query: 678 SPQTVAVLVNYIYFKAKWKTPFDPEHTIES-TFQVSKTRQ*RCP 806
P T+ VLVNYI+FKA+W PFDP T E +F V KT + P
Sbjct: 192 KPNTIMVLVNYIHFKAQWANPFDPSKTEEGFSFSVDKTTTVKVP 235
>ref|XP_547960.2| PREDICTED: similar to Corticosteroid-binding globulin precursor
(CBG) (Transcortin) [Canis familiaris].
Length = 404
Score = 182 bits (462), Expect = 3e-46
Identities = 91/190 (47%), Positives = 123/190 (64%)
Frame = +3
Query: 237 NTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPE 416
N DFAF+LY+ L ++ +NVF SP+S+SMALA LSLGA FN+T+ E
Sbjct: 42 NVDFAFNLYRHLVASSPDKNVFISPVSISMALAMLSLGACGYTRVQLLQGLGFNLTKMSE 101
Query: 417 AEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQD 596
AEIHQGF+HL L + +L++ +GNA+F+D L+LL+ F D Y EA+ T+FQD
Sbjct: 102 AEIHQGFRHLRHLLEKSDTMLEMTMGNALFLDRSLELLEPFSADTKHYYDLEAWATDFQD 161
Query: 597 LEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQ 776
A IN+Y+KNKT+GKIV+L+ KL + +LVNYI+FK W+ PFDPE T E F
Sbjct: 162 GTGASRQINEYIKNKTQGKIVDLLSKLDSSAMVILVNYIFFKGTWEHPFDPESTREEDFY 221
Query: 777 VSKTRQ*RCP 806
V++T R P
Sbjct: 222 VNETTVVRVP 231
>ref|XP_537544.2| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade A (alpha-1 antiproteinase, antitrypsin), member 9
[Canis familiaris].
Length = 418
Score = 178 bits (451), Expect = 6e-45
Identities = 100/224 (44%), Positives = 131/224 (58%), Gaps = 1/224 (0%)
Frame = +3
Query: 138 VHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLS 317
++C+P SK A + + SSNTDFAF LY++L L +NVFFSPLS
Sbjct: 18 IYCVPPPRAPSKGSPCMSSTRSTAASQ--LSSSNTDFAFRLYQRLILKTPDQNVFFSPLS 75
Query: 318 VSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGN 497
VS LA LSLGAR FN+T PE+ IHQ FQHLL +L P L LR+G+
Sbjct: 76 VSACLAMLSLGARSATKTQILQGLGFNLTHLPESSIHQAFQHLLHSLRVPGKDLDLRMGS 135
Query: 498 AMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKL 677
+FI + L L F+ D LY S+ F T+F AR IN YV+ +T+GK+V LI+ L
Sbjct: 136 VLFIKKELWLQTNFLDDVKRLYESKVFSTDFSSSSTAREKINSYVEKETKGKVVNLIQSL 195
Query: 678 SPQTVAVLVNYIYFKAKWKTPFDPEHTIEST-FQVSKTRQ*RCP 806
P TV VLVN+I+FK KW+ PF+P +T +S+ F V K + P
Sbjct: 196 EPLTVMVLVNHIFFKGKWEKPFNPGYTSKSSPFLVGKRTTVKVP 239
>ref|XP_547962.2| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade A (alpha-1 antiproteinase, antitrypsin), member 4
[Canis familiaris].
Length = 417
Score = 164 bits (416), Expect = 7e-41
Identities = 81/187 (43%), Positives = 114/187 (60%)
Frame = +3
Query: 225 VVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVT 404
+ NT FA Y +A + N+FFSPLS+S + A LSLGAR FN+T
Sbjct: 45 IAPGNTAFALHFYHLMASQSPGSNIFFSPLSISASYAMLSLGARSHSKTQILEGLGFNLT 104
Query: 405 ETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPT 584
E E++IH+GFQHLL TL+ P + L++ +G+ +F+ + L +L +F+ D+ Y S+ F T
Sbjct: 105 EVSESDIHRGFQHLLHTLHLPDDRLEMHMGSTLFLSQDLLILPEFLNDSVAFYDSKLFLT 164
Query: 585 NFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIE 764
NF D LIND++K +T+GKIV+L+ KL+ VLVNYIYFKA W+ PF P T
Sbjct: 165 NFHDPVGTTQLINDHIKEETQGKIVDLVSKLNTDIAMVLVNYIYFKALWEKPFQPSMTTT 224
Query: 765 STFQVSK 785
F V +
Sbjct: 225 QDFHVDE 231
>ref|XP_855206.1| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade A (alpha-1 antiproteinase, antitrypsin), member 11
[Canis familiaris].
Length = 422
Score = 162 bits (410), Expect = 3e-40
Identities = 87/211 (41%), Positives = 129/211 (61%), Gaps = 4/211 (1%)
Frame = +3
Query: 138 VHCLPADDLDSKIVTL----KDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFF 305
VHC P K + + +D ++ + + + T+FA LYKQLA A N+FF
Sbjct: 17 VHCQPFSAHGDKSLGVPHAPRDHLSSPDPAYHKITPTITNFALHLYKQLA-AETSGNIFF 75
Query: 306 SPLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQL 485
SP+S+S +LA LSLGA+ FN+TETPEA+IH+GFQ L+ TL+ PS+ L+L
Sbjct: 76 SPVSISTSLALLSLGAQVNTSTQILEGLGFNLTETPEADIHRGFQSLIHTLDLPSSKLEL 135
Query: 486 RLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVEL 665
++GN++F+D+ LK F+ ELY + AF NF D R IN+YV+ +T G++ +
Sbjct: 136 KVGNSLFLDKQLKPQQHFLDTIRELYGAFAFSANFTDSATTRRQINEYVRKQTYGQVADG 195
Query: 666 IKKLSPQTVAVLVNYIYFKAKWKTPFDPEHT 758
+++ + T+ VL+NYI+FKAKWK PF T
Sbjct: 196 LQEFTQDTLMVLLNYIFFKAKWKHPFSRYQT 226
>ref|XP_855210.1| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade A (alpha-1 antiproteinase, antitrypsin), member 12
[Canis familiaris].
Length = 414
Score = 157 bits (398), Expect = 8e-39
Identities = 87/209 (41%), Positives = 124/209 (59%), Gaps = 2/209 (0%)
Frame = +3
Query: 186 KDQITKLPAHKNA--VVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARX 359
K QI K A ++ NTDF LY++LA + R+N+FFSPLS+S A + LSLGA+
Sbjct: 33 KSQIQSWKGMKAAEGLIKRNTDFGCKLYRKLASNSPRKNIFFSPLSISAAFSMLSLGAQD 92
Query: 360 XXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKF 539
FN PE +IH+GF +L+ +N+ S L+L L N +FID+ L+ KF
Sbjct: 93 STLDEIKQG--FNFRNMPERDIHEGFHYLIYRMNQGSQDLELHLRNTLFIDQKLQPEKKF 150
Query: 540 VQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYF 719
+ + LY ++ PTNFQ+L R INDYV KT+GKI LIK + P TV +L N I+F
Sbjct: 151 LTNVKNLYSADTVPTNFQNLGDTRKQINDYVSQKTQGKINNLIKNIDPGTVMLLTNCIFF 210
Query: 720 KAKWKTPFDPEHTIESTFQVSKTRQ*RCP 806
+A+W+ FDP+ T E F + ++ + P
Sbjct: 211 RARWQHEFDPKITKEEDFFLDGNQRVKVP 239
>ref|XP_537545.1| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade A (alpha-1 antiproteinase, antitrypsin), member 5
[Canis familiaris].
Length = 407
Score = 148 bits (374), Expect = 5e-36
Identities = 83/194 (42%), Positives = 112/194 (57%)
Frame = +3
Query: 201 KLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXX 380
K P + V ++ DFAF LY+ LA AA +N+FFSPLS+S LA LSLGA
Sbjct: 32 KEPPVASTVAPASRDFAFDLYRALATAAPDQNIFFSPLSISTTLAMLSLGAGSSTKVQIL 91
Query: 381 XXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHEL 560
+ E E +H+ LL +P +QL LGNA+FI ++L D F+Q L
Sbjct: 92 EGLGLHPQEGLEEALHRRIHQLLWDFAQPREDIQLSLGNALFISPTVRLQDTFLQAVKML 151
Query: 561 YHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTP 740
Y ++ FPTNF D A+ INDYV +T+GKIV+L K L V+VNYI+FKAKW+T
Sbjct: 152 YLADTFPTNFGDPAGAQKQINDYVAKQTKGKIVDLAKDLDSTEAMVMVNYIFFKAKWETG 211
Query: 741 FDPEHTIESTFQVS 782
F+ + T + F V+
Sbjct: 212 FNHKSTRKQDFHVT 225
>ref|XP_857036.1| PREDICTED: similar to Squamous cell carcinoma antigen 2 (SCCA-2)
(Leupin) isoform 3 [Canis familiaris].
Length = 368
Score = 110 bits (276), Expect = 1e-24
Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 14/206 (6%)
Frame = +3
Query: 219 NAVVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFN 398
N++ ++NT FAF L++Q + + +N+FFSPLS+S ALA LGA+ FN
Sbjct: 2 NSLSAANTRFAFDLFQQFKTSKKGDNIFFSPLSISSALAMTYLGAKENTALEIGKVLHFN 61
Query: 399 V--------TETPEAE----IHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFV 542
T T E +H FQ LL L +P++ +L + N + ++ + L +++
Sbjct: 62 EATESTTGRTTTDHVEKMENVHHQFQKLLTELKKPTDAYELNMANKFYGEKKYQFLQEYM 121
Query: 543 QDAHELYHSEAFPTNFQD-LEAARGLINDYVKNKTEGKIVELIKKLS-PQTVAVLVNYIY 716
+ + Y + +F + E +R IN +V+++T KI ++ K S T+ VLVN +Y
Sbjct: 122 DNIKKFYLASVESVDFNNAAEESRKKINSWVESQTNEKIKDMFPKDSLNHTILVLVNAVY 181
Query: 717 FKAKWKTPFDPEHTIESTFQVSKTRQ 794
FK +W T FD ++T+E F + K Q
Sbjct: 182 FKGQWDTKFDTKNTVEKEFWLDKDLQ 207
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,861,084
Number of extensions: 868222
Number of successful extensions: 3635
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 3555
Number of HSP's successfully gapped: 46
Length of query: 271
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 170
Effective length of database: 15,507,568
Effective search space: 2636286560
Effective search space used: 2636286560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000859
(815 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076.2| alpha-1-antichymotrypsin precursor [Homo sapien... 236 1e-62
Alignment gi|NP_001002236.1| alpha-1-antitrypsin precursor [Homo sapiens]. 200 1e-51
Alignment gi|NP_001002235.1| alpha-1-antitrypsin precursor [Homo sapiens]. 200 1e-51
Alignment gi|NP_000286.3| alpha-1-antitrypsin precursor [Homo sapiens]. 200 1e-51
Alignment gi|NP_001121179.1| alpha-1-antitrypsin precursor [Homo sapiens]. 200 1e-51
Alignment gi|NP_001121178.1| alpha-1-antitrypsin precursor [Homo sapiens]. 200 1e-51
Alignment gi|NP_001121177.1| alpha-1-antitrypsin precursor [Homo sapiens]. 200 1e-51
Alignment gi|NP_001121176.1| alpha-1-antitrypsin precursor [Homo sapiens]. 200 1e-51
Alignment gi|NP_001121175.1| alpha-1-antitrypsin precursor [Homo sapiens]. 200 1e-51
Alignment gi|NP_001121174.1| alpha-1-antitrypsin precursor [Homo sapiens]. 200 1e-51
>ref|NP_001076.2| alpha-1-antichymotrypsin precursor [Homo sapiens].
Length = 423
Score = 236 bits (603), Expect = 1e-62
Identities = 128/222 (57%), Positives = 154/222 (69%), Gaps = 1/222 (0%)
Frame = +3
Query: 129 CSRVHCLPADDLDSKIVTLKDQITKLPAHKN-AVVSSNTDFAFSLYKQLALAARRENVFF 305
C V C P LD + +T ++Q H + + S+N DFAFSLYKQL L A +NV F
Sbjct: 18 CPAVLCHPNSPLDEENLTQENQ--DRGTHVDLGLASANVDFAFSLYKQLVLKAPDKNVIF 75
Query: 306 SPLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQL 485
SPLS+S ALAFLSLGA KFN+TET EAEIHQ FQHLLRTLN+ S+ LQL
Sbjct: 76 SPLSISTALAFLSLGAHNTTLTEILKGLKFNLTETSEAEIHQSFQHLLRTLNQSSDELQL 135
Query: 486 RLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVEL 665
+GNAMF+ E L LLD+F +DA LY SEAF T+FQD AA+ LINDYVKN T GKI +L
Sbjct: 136 SMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKNGTRGKITDL 195
Query: 666 IKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTR 791
IK L QT+ VLVNYI+FKAKW+ PFDP+ T +S F +SK +
Sbjct: 196 IKDLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKK 237
>ref|NP_001002236.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 200 bits (508), Expect = 1e-51
Identities = 98/196 (50%), Positives = 131/196 (66%)
Frame = +3
Query: 219 NAVVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFN 398
N + + +FAFSLY+QLA + N+FFSP+S++ A A LSLG + FN
Sbjct: 48 NKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFN 107
Query: 399 VTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAF 578
+TE PEA+IH+GFQ LLRTLN+P + LQL GN +F+ E LKL+DKF++D +LYHSEAF
Sbjct: 108 LTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAF 167
Query: 579 PTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHT 758
NF D E A+ INDYV+ T+GKIV+L+K+L TV LVNYI+FK KW+ PF+ + T
Sbjct: 168 TVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDT 227
Query: 759 IESTFQVSKTRQ*RCP 806
E F V + + P
Sbjct: 228 EEEDFHVDQVTTVKVP 243
>ref|NP_001002235.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 200 bits (508), Expect = 1e-51
Identities = 98/196 (50%), Positives = 131/196 (66%)
Frame = +3
Query: 219 NAVVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFN 398
N + + +FAFSLY+QLA + N+FFSP+S++ A A LSLG + FN
Sbjct: 48 NKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFN 107
Query: 399 VTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAF 578
+TE PEA+IH+GFQ LLRTLN+P + LQL GN +F+ E LKL+DKF++D +LYHSEAF
Sbjct: 108 LTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAF 167
Query: 579 PTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHT 758
NF D E A+ INDYV+ T+GKIV+L+K+L TV LVNYI+FK KW+ PF+ + T
Sbjct: 168 TVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDT 227
Query: 759 IESTFQVSKTRQ*RCP 806
E F V + + P
Sbjct: 228 EEEDFHVDQVTTVKVP 243
>ref|NP_000286.3| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 200 bits (508), Expect = 1e-51
Identities = 98/196 (50%), Positives = 131/196 (66%)
Frame = +3
Query: 219 NAVVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFN 398
N + + +FAFSLY+QLA + N+FFSP+S++ A A LSLG + FN
Sbjct: 48 NKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFN 107
Query: 399 VTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAF 578
+TE PEA+IH+GFQ LLRTLN+P + LQL GN +F+ E LKL+DKF++D +LYHSEAF
Sbjct: 108 LTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAF 167
Query: 579 PTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHT 758
NF D E A+ INDYV+ T+GKIV+L+K+L TV LVNYI+FK KW+ PF+ + T
Sbjct: 168 TVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDT 227
Query: 759 IESTFQVSKTRQ*RCP 806
E F V + + P
Sbjct: 228 EEEDFHVDQVTTVKVP 243
>ref|NP_001121179.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 200 bits (508), Expect = 1e-51
Identities = 98/196 (50%), Positives = 131/196 (66%)
Frame = +3
Query: 219 NAVVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFN 398
N + + +FAFSLY+QLA + N+FFSP+S++ A A LSLG + FN
Sbjct: 48 NKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFN 107
Query: 399 VTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAF 578
+TE PEA+IH+GFQ LLRTLN+P + LQL GN +F+ E LKL+DKF++D +LYHSEAF
Sbjct: 108 LTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAF 167
Query: 579 PTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHT 758
NF D E A+ INDYV+ T+GKIV+L+K+L TV LVNYI+FK KW+ PF+ + T
Sbjct: 168 TVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDT 227
Query: 759 IESTFQVSKTRQ*RCP 806
E F V + + P
Sbjct: 228 EEEDFHVDQVTTVKVP 243
>ref|NP_001121178.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 200 bits (508), Expect = 1e-51
Identities = 98/196 (50%), Positives = 131/196 (66%)
Frame = +3
Query: 219 NAVVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFN 398
N + + +FAFSLY+QLA + N+FFSP+S++ A A LSLG + FN
Sbjct: 48 NKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFN 107
Query: 399 VTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAF 578
+TE PEA+IH+GFQ LLRTLN+P + LQL GN +F+ E LKL+DKF++D +LYHSEAF
Sbjct: 108 LTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAF 167
Query: 579 PTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHT 758
NF D E A+ INDYV+ T+GKIV+L+K+L TV LVNYI+FK KW+ PF+ + T
Sbjct: 168 TVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDT 227
Query: 759 IESTFQVSKTRQ*RCP 806
E F V + + P
Sbjct: 228 EEEDFHVDQVTTVKVP 243
>ref|NP_001121177.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 200 bits (508), Expect = 1e-51
Identities = 98/196 (50%), Positives = 131/196 (66%)
Frame = +3
Query: 219 NAVVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFN 398
N + + +FAFSLY+QLA + N+FFSP+S++ A A LSLG + FN
Sbjct: 48 NKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFN 107
Query: 399 VTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAF 578
+TE PEA+IH+GFQ LLRTLN+P + LQL GN +F+ E LKL+DKF++D +LYHSEAF
Sbjct: 108 LTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAF 167
Query: 579 PTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHT 758
NF D E A+ INDYV+ T+GKIV+L+K+L TV LVNYI+FK KW+ PF+ + T
Sbjct: 168 TVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDT 227
Query: 759 IESTFQVSKTRQ*RCP 806
E F V + + P
Sbjct: 228 EEEDFHVDQVTTVKVP 243
>ref|NP_001121176.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 200 bits (508), Expect = 1e-51
Identities = 98/196 (50%), Positives = 131/196 (66%)
Frame = +3
Query: 219 NAVVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFN 398
N + + +FAFSLY+QLA + N+FFSP+S++ A A LSLG + FN
Sbjct: 48 NKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFN 107
Query: 399 VTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAF 578
+TE PEA+IH+GFQ LLRTLN+P + LQL GN +F+ E LKL+DKF++D +LYHSEAF
Sbjct: 108 LTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAF 167
Query: 579 PTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHT 758
NF D E A+ INDYV+ T+GKIV+L+K+L TV LVNYI+FK KW+ PF+ + T
Sbjct: 168 TVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDT 227
Query: 759 IESTFQVSKTRQ*RCP 806
E F V + + P
Sbjct: 228 EEEDFHVDQVTTVKVP 243
>ref|NP_001121175.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 200 bits (508), Expect = 1e-51
Identities = 98/196 (50%), Positives = 131/196 (66%)
Frame = +3
Query: 219 NAVVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFN 398
N + + +FAFSLY+QLA + N+FFSP+S++ A A LSLG + FN
Sbjct: 48 NKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFN 107
Query: 399 VTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAF 578
+TE PEA+IH+GFQ LLRTLN+P + LQL GN +F+ E LKL+DKF++D +LYHSEAF
Sbjct: 108 LTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAF 167
Query: 579 PTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHT 758
NF D E A+ INDYV+ T+GKIV+L+K+L TV LVNYI+FK KW+ PF+ + T
Sbjct: 168 TVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDT 227
Query: 759 IESTFQVSKTRQ*RCP 806
E F V + + P
Sbjct: 228 EEEDFHVDQVTTVKVP 243
>ref|NP_001121174.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 200 bits (508), Expect = 1e-51
Identities = 98/196 (50%), Positives = 131/196 (66%)
Frame = +3
Query: 219 NAVVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFN 398
N + + +FAFSLY+QLA + N+FFSP+S++ A A LSLG + FN
Sbjct: 48 NKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFN 107
Query: 399 VTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAF 578
+TE PEA+IH+GFQ LLRTLN+P + LQL GN +F+ E LKL+DKF++D +LYHSEAF
Sbjct: 108 LTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAF 167
Query: 579 PTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHT 758
NF D E A+ INDYV+ T+GKIV+L+K+L TV LVNYI+FK KW+ PF+ + T
Sbjct: 168 TVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDT 227
Query: 759 IESTFQVSKTRQ*RCP 806
E F V + + P
Sbjct: 228 EEEDFHVDQVTTVKVP 243
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,204,649
Number of extensions: 845135
Number of successful extensions: 3352
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 3281
Number of HSP's successfully gapped: 60
Length of query: 271
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 170
Effective length of database: 14,967,800
Effective search space: 2544526000
Effective search space used: 2544526000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000859
(815 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035588.2| serine protease inhibitor A3K precursor [Mus mu... 202 3e-52
Alignment gi|NP_033279.2| serine protease inhibitor A3M precursor [Mus mu... 201 5e-52
Alignment gi|NP_001161766.1| serine protease inhibitor A3F [Mus musculus]. 199 2e-51
Alignment gi|NP_001028507.2| serine protease inhibitor A3F [Mus musculus]. 199 2e-51
Alignment gi|NP_001161767.1| serine protease inhibitor A3F [Mus musculus]. 199 2e-51
Alignment gi|NP_033278.2| serine protease inhibitor A3N precursor [Mus mu... 199 3e-51
Alignment gi|NP_033277.1| serine protease inhibitor A3G [Mus musculus]. 198 4e-51
Alignment gi|NP_032484.1| serine protease inhibitor A3C precursor [Mus mu... 198 5e-51
Alignment gi|XP_003086957.1| PREDICTED: serine protease inhibitor A3K-lik... 197 6e-51
Alignment gi|NP_001186869.1| serine (or cysteine) peptidase inhibitor, cl... 195 3e-50
>ref|NP_035588.2| serine protease inhibitor A3K precursor [Mus musculus].
Length = 418
Score = 202 bits (513), Expect = 3e-52
Identities = 106/226 (46%), Positives = 144/226 (63%)
Frame = +3
Query: 129 CSRVHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFS 308
C V C P + IV + Q + S NTDFAFSLYK+LAL + +N+ FS
Sbjct: 16 CPAVLCFPDGTKEMDIVFHEHQDNGTQDDSLTLASVNTDFAFSLYKKLALKNQDKNIVFS 75
Query: 309 PLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLR 488
PLS+S ALA +SLGA+ KFN+TETPEA+IHQGF +LL++L++P + Q+
Sbjct: 76 PLSISAALALVSLGAKGKTMEEILEGLKFNLTETPEADIHQGFGNLLQSLSQPEDQDQIN 135
Query: 489 LGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELI 668
+GNAMFI++ L++L +F + LY +EAF +FQ A+ LINDYV N+T+G I +LI
Sbjct: 136 IGNAMFIEKDLQILAEFHEKTRALYQTEAFTADFQQPTEAKNLINDYVSNQTQGMIKKLI 195
Query: 669 KKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTRQ*RCP 806
+L T+ VLVNYIYFK KWK FDP+ T ES F + + R + P
Sbjct: 196 SELDDGTLMVLVNYIYFKGKWKISFDPQDTFESEFYLDEKRSVKVP 241
>ref|NP_033279.2| serine protease inhibitor A3M precursor [Mus musculus].
Length = 418
Score = 201 bits (511), Expect = 5e-52
Identities = 106/226 (46%), Positives = 143/226 (63%)
Frame = +3
Query: 129 CSRVHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFS 308
C V C D I+ K+Q + P + S NTDFAFSLYK++AL +N+ FS
Sbjct: 15 CPTVLCFSDDTWGIDILLHKNQESGTPDDSLTLASINTDFAFSLYKKMALKNPDKNIVFS 74
Query: 309 PLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLR 488
PLS+S ALA +SLGA+ KFN+TET EA+IHQGF HLL+ L++P + Q+
Sbjct: 75 PLSISAALALVSLGAKGNTLEEILEGLKFNLTETSEADIHQGFGHLLQRLSQPEDQDQIN 134
Query: 489 LGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELI 668
+GNAMFI++ L++L +F + LY +EAF +FQ A LINDYV N+T+G I +LI
Sbjct: 135 IGNAMFIEKDLQILAEFHEKTRALYQTEAFTADFQQPTEATKLINDYVSNQTQGMIKKLI 194
Query: 669 KKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTRQ*RCP 806
+L +T+ VLVNYIYFK KWK FDP+ T ES F + + R + P
Sbjct: 195 SELDDRTLMVLVNYIYFKGKWKISFDPQDTFESEFYLDEKRSVKVP 240
>ref|NP_001161766.1| serine protease inhibitor A3F [Mus musculus].
Length = 445
Score = 199 bits (507), Expect = 2e-51
Identities = 101/194 (52%), Positives = 132/194 (68%)
Frame = +3
Query: 225 VVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVT 404
+ SSNTDFAFSLYK+L L ENV FSP S+ ALA LSLGA+ KFN+T
Sbjct: 37 LASSNTDFAFSLYKELVLKNPDENVVFSPFSICTALALLSLGAKSNTLKEILEGLKFNLT 96
Query: 405 ETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPT 584
ETPE +IHQGF++LL L++P N +Q+ G+A+FI++HL++L +F + A LY +EAF
Sbjct: 97 ETPEPDIHQGFRYLLDLLSQPGNQVQISTGSALFIEKHLQILAEFKEKARALYQAEAFTA 156
Query: 585 NFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIE 764
+FQ A LINDYV N T+GKI ELI L +T+ VLVNYIYFK KW+ PFDP+ T +
Sbjct: 157 DFQQPLEATKLINDYVSNHTQGKIKELISDLDKRTLMVLVNYIYFKGKWEMPFDPDDTCK 216
Query: 765 STFQVSKTRQ*RCP 806
S F + + R + P
Sbjct: 217 SEFYLDENRSVKVP 230
>ref|NP_001028507.2| serine protease inhibitor A3F [Mus musculus].
Length = 445
Score = 199 bits (507), Expect = 2e-51
Identities = 101/194 (52%), Positives = 132/194 (68%)
Frame = +3
Query: 225 VVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVT 404
+ SSNTDFAFSLYK+L L ENV FSP S+ ALA LSLGA+ KFN+T
Sbjct: 37 LASSNTDFAFSLYKELVLKNPDENVVFSPFSICTALALLSLGAKSNTLKEILEGLKFNLT 96
Query: 405 ETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPT 584
ETPE +IHQGF++LL L++P N +Q+ G+A+FI++HL++L +F + A LY +EAF
Sbjct: 97 ETPEPDIHQGFRYLLDLLSQPGNQVQISTGSALFIEKHLQILAEFKEKARALYQAEAFTA 156
Query: 585 NFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIE 764
+FQ A LINDYV N T+GKI ELI L +T+ VLVNYIYFK KW+ PFDP+ T +
Sbjct: 157 DFQQPLEATKLINDYVSNHTQGKIKELISDLDKRTLMVLVNYIYFKGKWEMPFDPDDTCK 216
Query: 765 STFQVSKTRQ*RCP 806
S F + + R + P
Sbjct: 217 SEFYLDENRSVKVP 230
>ref|NP_001161767.1| serine protease inhibitor A3F [Mus musculus].
Length = 445
Score = 199 bits (507), Expect = 2e-51
Identities = 101/194 (52%), Positives = 132/194 (68%)
Frame = +3
Query: 225 VVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVT 404
+ SSNTDFAFSLYK+L L ENV FSP S+ ALA LSLGA+ KFN+T
Sbjct: 37 LASSNTDFAFSLYKELVLKNPDENVVFSPFSICTALALLSLGAKSNTLKEILEGLKFNLT 96
Query: 405 ETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPT 584
ETPE +IHQGF++LL L++P N +Q+ G+A+FI++HL++L +F + A LY +EAF
Sbjct: 97 ETPEPDIHQGFRYLLDLLSQPGNQVQISTGSALFIEKHLQILAEFKEKARALYQAEAFTA 156
Query: 585 NFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIE 764
+FQ A LINDYV N T+GKI ELI L +T+ VLVNYIYFK KW+ PFDP+ T +
Sbjct: 157 DFQQPLEATKLINDYVSNHTQGKIKELISDLDKRTLMVLVNYIYFKGKWEMPFDPDDTCK 216
Query: 765 STFQVSKTRQ*RCP 806
S F + + R + P
Sbjct: 217 SEFYLDENRSVKVP 230
>ref|NP_033278.2| serine protease inhibitor A3N precursor [Mus musculus].
Length = 418
Score = 199 bits (505), Expect = 3e-51
Identities = 103/221 (46%), Positives = 136/221 (61%)
Frame = +3
Query: 129 CSRVHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFS 308
C V C P L +D + S NTDFAFSLYK+L L +N+ FS
Sbjct: 15 CPAVLCFPDGTLGMDAAVQEDHDNGTQLDSLTLASINTDFAFSLYKELVLKNPDKNIVFS 74
Query: 309 PLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLR 488
PLS+S ALA +SLGA+ KFN+TET EA+IHQGF HLL+ LN+P + +Q+
Sbjct: 75 PLSISAALAVMSLGAKGNTLEEILEGLKFNLTETSEADIHQGFGHLLQRLNQPKDQVQIS 134
Query: 489 LGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELI 668
G+A+FI++ ++L +F + A LY +EAF +FQ A+ LINDYV+ +T+G I EL+
Sbjct: 135 TGSALFIEKRQQILTEFQEKARALYQAEAFTADFQQPRQAKKLINDYVRKQTQGMIKELV 194
Query: 669 KKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTR 791
L +T+ VLVNYIYFKAKWK PFDP T +S F K R
Sbjct: 195 SDLDKRTLMVLVNYIYFKAKWKVPFDPLDTFKSEFYAGKRR 235
>ref|NP_033277.1| serine protease inhibitor A3G [Mus musculus].
Length = 440
Score = 198 bits (504), Expect = 4e-51
Identities = 101/189 (53%), Positives = 129/189 (68%)
Frame = +3
Query: 225 VVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVT 404
+VSSNTDFAFSLY++L L ENV FSP S+ ALA LSLGA+ KFN+T
Sbjct: 37 LVSSNTDFAFSLYRKLVLKNPDENVVFSPFSICTALALLSLGAKSNTLKEILEGLKFNLT 96
Query: 405 ETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPT 584
ETPE +IHQGF++LL L++P N +Q+ G+A+FI++HL++L +F + A LY +EAF
Sbjct: 97 ETPEPDIHQGFRYLLDLLSQPGNQVQISTGSALFIEKHLQILAEFKEKARALYQAEAFTA 156
Query: 585 NFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIE 764
+FQ A LINDYV N T+GKI ELI L T+ VLVNYIYFK KWK PFDP T +
Sbjct: 157 DFQQPLKATKLINDYVSNHTQGKIKELISGLKESTLMVLVNYIYFKGKWKNPFDPNDTFK 216
Query: 765 STFQVSKTR 791
S F + + R
Sbjct: 217 SEFYLDEKR 225
>ref|NP_032484.1| serine protease inhibitor A3C precursor [Mus musculus].
Length = 417
Score = 198 bits (503), Expect = 5e-51
Identities = 105/226 (46%), Positives = 137/226 (60%)
Frame = +3
Query: 129 CSRVHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFS 308
C V C P L+ + KD+ + S NTDFAFSLYK+LAL N+ FS
Sbjct: 15 CPGVLCFPDGTLERDTLFHKDKENGTQLDSLTLASINTDFAFSLYKKLALKNPDTNIVFS 74
Query: 309 PLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLR 488
PLS+S ALA +SLGA+ FN+TETPEA+IHQGF HLL+ L+ P +Q+
Sbjct: 75 PLSISAALAIVSLGAKGNTLEEILEGLNFNLTETPEADIHQGFGHLLQRLSHPGEQVQIS 134
Query: 489 LGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELI 668
G+A+F+++HL++L +F + A LY +EAF +FQ A LINDYV N+T+ KI LI
Sbjct: 135 TGSALFVEKHLQILAEFQEKARALYQAEAFTADFQQPLEATKLINDYVSNQTQRKIKGLI 194
Query: 669 KKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTRQ*RCP 806
L T+ VLVNYIYFK KWK PF+P T ES F + R + P
Sbjct: 195 SDLDTDTLMVLVNYIYFKGKWKMPFNPRDTFESEFYLDVKRSVKVP 240
>ref|XP_003086957.1| PREDICTED: serine protease inhibitor A3K-like [Mus musculus].
Length = 382
Score = 197 bits (502), Expect = 6e-51
Identities = 100/194 (51%), Positives = 134/194 (69%)
Frame = +3
Query: 225 VVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVT 404
+ S NTDFAFSLYK+LAL N+ FSPLS+S ALA +SLGA+ KFN+T
Sbjct: 20 LASVNTDFAFSLYKKLALKNPDTNIVFSPLSISAALALVSLGAKGKTMEEILEGLKFNLT 79
Query: 405 ETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPT 584
ETPEA+IHQGF +LL++L++P + Q+ +GNAMFI++ L++L +F + LY +EAF
Sbjct: 80 ETPEADIHQGFGNLLQSLSQPEDQDQINIGNAMFIEKDLQILAEFHEKTRALYQTEAFTA 139
Query: 585 NFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIE 764
+FQ A+ LINDYV N+T+G I ELI +L +T+ VLVNYIYFK KWK FDP+ T E
Sbjct: 140 DFQQPTEAKNLINDYVSNQTQGMIKELISELDERTLMVLVNYIYFKGKWKISFDPQDTFE 199
Query: 765 STFQVSKTRQ*RCP 806
S F + + R + P
Sbjct: 200 SEFYLDEKRSVKVP 213
>ref|NP_001186869.1| serine (or cysteine) peptidase inhibitor, clade A, member 3I [Mus
musculus].
Length = 408
Score = 195 bits (496), Expect = 3e-50
Identities = 99/194 (51%), Positives = 130/194 (67%)
Frame = +3
Query: 225 VVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVT 404
V SSNTDFAFSLY++L L ENV FSP S+ ALA LSLGA+ KFN+T
Sbjct: 37 VASSNTDFAFSLYRKLVLKNPDENVVFSPFSIFTALALLSLGAKSNTLKEILEGLKFNLT 96
Query: 405 ETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPT 584
ETPE +IHQGF++LL L++P + +Q+ G+A+F+++HL++L +F + A LY +EAF
Sbjct: 97 ETPEPDIHQGFRYLLDLLSQPGDQVQISTGSALFVEKHLQILAEFKEKARALYQAEAFTA 156
Query: 585 NFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIE 764
+F A+ LINDYV N+T+GKI ELI L T+ VLVNYIYFK KWK PFDP T
Sbjct: 157 DFLQPCQAKKLINDYVSNQTQGKIKELISDLDKSTLMVLVNYIYFKGKWKMPFDPRDTFN 216
Query: 765 STFQVSKTRQ*RCP 806
S F + + R + P
Sbjct: 217 SKFYLDEKRSVKVP 230
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,484,621
Number of extensions: 699454
Number of successful extensions: 2836
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 2753
Number of HSP's successfully gapped: 80
Length of query: 271
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 171
Effective length of database: 12,613,959
Effective search space: 2156986989
Effective search space used: 2156986989
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000859
(815 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928637.3| PREDICTED: serpin A3-5 [Sus scrofa]. 359 1e-99
Alignment gi|NP_998952.1| alpha-1-antichymotrypsin 2 [Sus scrofa]. 346 8e-96
Alignment gi|XP_001928879.1| PREDICTED: serpin A3-6 [Sus scrofa]. 345 2e-95
Alignment gi|XP_003356842.1| PREDICTED: serpin A3-6 [Sus scrofa]. 331 3e-91
Alignment gi|XP_001928857.3| PREDICTED: serpin A3-8 [Sus scrofa]. 321 3e-88
Alignment gi|XP_003356841.1| PREDICTED: serpin A3-8-like, partial [Sus sc... 219 1e-57
Alignment gi|NP_999560.1| alpha-1-antitrypsin precursor [Sus scrofa]. 196 2e-50
Alignment gi|XP_003361568.1| PREDICTED: thyroxine-binding globulin-like [... 185 3e-47
Alignment gi|NP_999223.1| thyroxine-binding globulin precursor [Sus scrof... 185 3e-47
Alignment gi|XP_003128752.2| PREDICTED: serpin A12-like [Sus scrofa]. 168 4e-42
>ref|XP_001928637.3| PREDICTED: serpin A3-5 [Sus scrofa].
Length = 393
Score = 359 bits (921), Expect = 1e-99
Identities = 195/265 (73%), Positives = 201/265 (75%)
Frame = +3
Query: 12 ALRAGGGSGSTQRIPLCEADMRAEGMSXXXXXXXXXXXXCSRVHCLPADDLDSKIVTLKD 191
ALRAGGGSGSTQRI LCEA ADD SKIVTLKD
Sbjct: 40 ALRAGGGSGSTQRILLCEA----------------------------ADDPASKIVTLKD 71
Query: 192 QITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXX 371
QI KLPAH AVVSSNTDFAFSLYKQLAL ENV FSPLSVSMALAFLSLGAR
Sbjct: 72 QIRKLPAHNTAVVSSNTDFAFSLYKQLALTNPHENVIFSPLSVSMALAFLSLGARGPTLT 131
Query: 372 XXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDA 551
KFN+T+TPEAEIHQGFQHLL TL+R SNLLQLRLGNAMFIDE L+LLDKFVQDA
Sbjct: 132 ELLEGLKFNLTKTPEAEIHQGFQHLLSTLDRSSNLLQLRLGNAMFIDEQLELLDKFVQDA 191
Query: 552 HELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKW 731
HELYHSEAFPTNFQDLEAAR LINDYVKNKTEGKIV+L KKL P T VLVNYIYFKAKW
Sbjct: 192 HELYHSEAFPTNFQDLEAARRLINDYVKNKTEGKIVDLFKKLDPLTKVVLVNYIYFKAKW 251
Query: 732 KTPFDPEHTIESTFQVSKTRQ*RCP 806
KTPFDPEHTIESTF VSK R + P
Sbjct: 252 KTPFDPEHTIESTFHVSKNRTVKVP 276
>ref|NP_998952.1| alpha-1-antichymotrypsin 2 [Sus scrofa].
Length = 415
Score = 346 bits (888), Expect = 8e-96
Identities = 179/226 (79%), Positives = 187/226 (82%)
Frame = +3
Query: 129 CSRVHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFS 308
CSRVHC+PADD SKIVTLKDQI KLPAH AVVSSNTDFAFSLYKQLAL ENV FS
Sbjct: 15 CSRVHCVPADDPASKIVTLKDQIKKLPAHNTAVVSSNTDFAFSLYKQLALTNPHENVIFS 74
Query: 309 PLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLR 488
PLSVSMALAFLSLGAR KFN+T+TPEAEIHQGFQHLL TL+R SNLLQLR
Sbjct: 75 PLSVSMALAFLSLGARGPTLTELLEGLKFNLTKTPEAEIHQGFQHLLSTLDRSSNLLQLR 134
Query: 489 LGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELI 668
LGNAMFIDE L+LLDKFVQDAHELYHSEAFPTNFQDLEAAR LINDYVKNKTEGKIV+L
Sbjct: 135 LGNAMFIDEQLELLDKFVQDAHELYHSEAFPTNFQDLEAARRLINDYVKNKTEGKIVDLF 194
Query: 669 KKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTRQ*RCP 806
KKL P T VLVNYIYFKAKWKTPF+P T E+ F VSK R R P
Sbjct: 195 KKLDPLTKVVLVNYIYFKAKWKTPFNPNLTTEADFHVSKNRTVRVP 240
>ref|XP_001928879.1| PREDICTED: serpin A3-6 [Sus scrofa].
Length = 423
Score = 345 bits (885), Expect = 2e-95
Identities = 179/245 (73%), Positives = 195/245 (79%)
Frame = +3
Query: 72 MRAEGMSXXXXXXXXXXXXCSRVHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFA 251
MRAEGMS CSRVHC+PADDL SKIVTLK QITKLPAH AVVSSNTDFA
Sbjct: 1 MRAEGMSLFLALGLLVAGLCSRVHCVPADDLASKIVTLKGQITKLPAHNTAVVSSNTDFA 60
Query: 252 FSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQ 431
FSLYKQL +NV FSPLSVS+ALAFLSLGA+ KFN+T+TPEAEIHQ
Sbjct: 61 FSLYKQLVSLDPSKNVIFSPLSVSIALAFLSLGAQGSTLTELLEGLKFNLTKTPEAEIHQ 120
Query: 432 GFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAAR 611
GFQHLL+ L++PSNLLQL +GNAMF+DEHLKLLDKFVQDA ELYHSEAFPTNFQDLEAAR
Sbjct: 121 GFQHLLQALSQPSNLLQLNVGNAMFVDEHLKLLDKFVQDARELYHSEAFPTNFQDLEAAR 180
Query: 612 GLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTR 791
LINDYVKNKTEGKIVELIKKL P+TVAVLVNYIYFKA+W T FDP T E+ F VSK +
Sbjct: 181 RLINDYVKNKTEGKIVELIKKLFPRTVAVLVNYIYFKAQWMTHFDPNLTTEADFYVSKNK 240
Query: 792 Q*RCP 806
+ P
Sbjct: 241 TVKVP 245
>ref|XP_003356842.1| PREDICTED: serpin A3-6 [Sus scrofa].
Length = 345
Score = 331 bits (849), Expect = 3e-91
Identities = 173/217 (79%), Positives = 179/217 (82%)
Frame = +3
Query: 72 MRAEGMSXXXXXXXXXXXXCSRVHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFA 251
MRAEGMS CSRVHC+PADDL SKIVTLKDQI KLP H AVVSSNTDFA
Sbjct: 1 MRAEGMSLFLALGLLVAGLCSRVHCVPADDLASKIVTLKDQIKKLPVHNTAVVSSNTDFA 60
Query: 252 FSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQ 431
FSLYKQL+L R +N+ FSPLSVSMALAFLSLGAR KFNVTETPEAEIHQ
Sbjct: 61 FSLYKQLSLTNRHKNIIFSPLSVSMALAFLSLGARGPTLTELLEGLKFNVTETPEAEIHQ 120
Query: 432 GFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAAR 611
GFQHLLRTLNRPSNLLQLRLGNAMFIDE L+LLDKFVQDA ELYHSEAFPTNFQDLEAAR
Sbjct: 121 GFQHLLRTLNRPSNLLQLRLGNAMFIDEQLELLDKFVQDARELYHSEAFPTNFQDLEAAR 180
Query: 612 GLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFK 722
LINDYVKNKTEGKIVELIK+L P T AVLVNYIYFK
Sbjct: 181 RLINDYVKNKTEGKIVELIKRLIPVTEAVLVNYIYFK 217
>ref|XP_001928857.3| PREDICTED: serpin A3-8 [Sus scrofa].
Length = 423
Score = 321 bits (823), Expect = 3e-88
Identities = 168/245 (68%), Positives = 185/245 (75%)
Frame = +3
Query: 72 MRAEGMSXXXXXXXXXXXXCSRVHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFA 251
MRAEGMS CSRVHC+PADDL SK VTLK QITKLPAH AVVSSNTDFA
Sbjct: 1 MRAEGMSLFLALGLLVAGLCSRVHCVPADDLASKTVTLKGQITKLPAHNTAVVSSNTDFA 60
Query: 252 FSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQ 431
FSLYKQL +NV FSPLSVS+ALAFLSLGAR KFN+T+TPEAEIHQ
Sbjct: 61 FSLYKQLVSLDPNKNVIFSPLSVSIALAFLSLGARGSTLTELLEGLKFNLTKTPEAEIHQ 120
Query: 432 GFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAAR 611
GFQHLLR L++PSNLLQL +GNAMF+DE LKLLDKFVQDA ELY SE F +F+D +AA
Sbjct: 121 GFQHLLRALSQPSNLLQLNVGNAMFVDERLKLLDKFVQDARELYFSEVFSISFKDSDAAV 180
Query: 612 GLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVSKTR 791
IN+YVKNKT+GKIV+L K+LSP TV VLVN IYFKAKWKTPFDP T E+ F VSK R
Sbjct: 181 EFINNYVKNKTKGKIVDLFKQLSPDTVLVLVNCIYFKAKWKTPFDPSFTTEADFHVSKNR 240
Query: 792 Q*RCP 806
R P
Sbjct: 241 TVRVP 245
>ref|XP_003356841.1| PREDICTED: serpin A3-8-like, partial [Sus scrofa].
Length = 201
Score = 219 bits (558), Expect = 1e-57
Identities = 116/194 (59%), Positives = 140/194 (72%)
Frame = +3
Query: 138 VHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLS 317
VHC+P D + T DQ ++ P +A+V SNTDFAFSLYKQL +NV FSPLS
Sbjct: 7 VHCVPEGKPDPENGTPNDQHSRTPVDPHAIVPSNTDFAFSLYKQLVSLDPSKNVIFSPLS 66
Query: 318 VSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGN 497
VS+ALAFLSLGAR KFN+T+TPEAEIHQGFQHLL+ L++PSNLLQL +GN
Sbjct: 67 VSIALAFLSLGARGPTLTELLEGLKFNLTKTPEAEIHQGFQHLLQALSQPSNLLQLNVGN 126
Query: 498 AMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKL 677
AMF+DEHLKLLD+F QDA + S+ F TNF+D AA INDYVKNKT+GKI +L +
Sbjct: 127 AMFVDEHLKLLDEFRQDAQAKFASDVFSTNFKDPGAAVVFINDYVKNKTKGKIPKLFDEH 186
Query: 678 SPQTVAVLVNYIYF 719
+ +V VLVNYIYF
Sbjct: 187 ATFSVMVLVNYIYF 200
>ref|NP_999560.1| alpha-1-antitrypsin precursor [Sus scrofa].
Length = 421
Score = 196 bits (497), Expect = 2e-50
Identities = 95/188 (50%), Positives = 125/188 (66%)
Frame = +3
Query: 243 DFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAE 422
DFAFSLY+Q+A + N+F SP++++ A A LSLG + +FN+TE EAE
Sbjct: 59 DFAFSLYRQVARQSNTSNIFLSPVTIARAFAMLSLGTKGATHAEILEGLQFNLTEKAEAE 118
Query: 423 IHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLE 602
IH+GFQHLL TLN+P N LQL GN +FIDE KL+ KF++D LYHSEAF NF+D E
Sbjct: 119 IHEGFQHLLHTLNQPDNQLQLTTGNGLFIDEKAKLVPKFLEDVKNLYHSEAFSINFRDTE 178
Query: 603 AARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKAKWKTPFDPEHTIESTFQVS 782
A+ INDYV+ ++GKIV+L+ +L TV LVNYI+FK KW+ PF+ E T E F V
Sbjct: 179 EAKKCINDYVEKGSQGKIVDLVDELDKDTVFALVNYIFFKGKWEKPFEVEQTTEEDFHVD 238
Query: 783 KTRQ*RCP 806
+ + P
Sbjct: 239 EETTVKVP 246
>ref|XP_003361568.1| PREDICTED: thyroxine-binding globulin-like [Sus scrofa].
Length = 420
Score = 185 bits (469), Expect = 3e-47
Identities = 99/224 (44%), Positives = 139/224 (62%), Gaps = 1/224 (0%)
Frame = +3
Query: 138 VHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLS 317
+HC+ + + K+ + HK + S N DFAF+LY++ A+ +N+FFSP+S
Sbjct: 22 IHCVQPNISEGKVTSCLSPQQNATLHKMS--SINADFAFNLYRRFAVETPDQNIFFSPVS 79
Query: 318 VSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGN 497
+S ALA LS GA +N+TE P AEI QGFQHL+ +LN P L+L++GN
Sbjct: 80 ISAALAMLSFGACSSTQTQILESLGYNLTEMPMAEIQQGFQHLICSLNFPKKELELQMGN 139
Query: 498 AMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKL 677
A+FI++ LK L KF+ D LY +E F T+F ++ AA+ +N +V+ +T+GKIV LI L
Sbjct: 140 ALFIEKQLKPLAKFLDDVKNLYETEVFSTDFSNVSAAQQELNSHVERQTKGKIVGLIPDL 199
Query: 678 SPQTVAVLVNYIYFKAKWKTPFDPEHTIE-STFQVSKTRQ*RCP 806
P T+ VLVNYI FKA+W PFDP T E S+F V KT + P
Sbjct: 200 KPNTIMVLVNYICFKAQWANPFDPSKTEEGSSFLVDKTTTVQVP 243
>ref|NP_999223.1| thyroxine-binding globulin precursor [Sus scrofa].
Length = 412
Score = 185 bits (469), Expect = 3e-47
Identities = 99/224 (44%), Positives = 139/224 (62%), Gaps = 1/224 (0%)
Frame = +3
Query: 138 VHCLPADDLDSKIVTLKDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLS 317
+HC+ + + K+ + HK + S N DFAF+LY++ A+ +N+FFSP+S
Sbjct: 14 IHCVQPNISEGKVTSCLSPQQNATLHKMS--SINADFAFNLYRRFAVETPDQNIFFSPVS 71
Query: 318 VSMALAFLSLGARXXXXXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGN 497
+S ALA LS GA +N+TE P AEI QGFQHL+ +LN P L+L++GN
Sbjct: 72 ISAALAMLSFGACSSTQTQILESLGYNLTEMPMAEIQQGFQHLICSLNFPKKELELQMGN 131
Query: 498 AMFIDEHLKLLDKFVQDAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKL 677
A+FI++ LK L KF+ D LY +E F T+F ++ AA+ +N +V+ +T+GKIV LI L
Sbjct: 132 ALFIEKQLKPLAKFLDDVKNLYETEVFSTDFSNVSAAQQELNSHVERQTKGKIVGLIPDL 191
Query: 678 SPQTVAVLVNYIYFKAKWKTPFDPEHTIE-STFQVSKTRQ*RCP 806
P T+ VLVNYI FKA+W PFDP T E S+F V KT + P
Sbjct: 192 KPNTIMVLVNYICFKAQWANPFDPSKTEEGSSFLVDKTTTVQVP 235
>ref|XP_003128752.2| PREDICTED: serpin A12-like [Sus scrofa].
Length = 414
Score = 168 bits (425), Expect = 4e-42
Identities = 85/207 (41%), Positives = 126/207 (60%)
Frame = +3
Query: 186 KDQITKLPAHKNAVVSSNTDFAFSLYKQLALAARRENVFFSPLSVSMALAFLSLGARXXX 365
+DQ+ K + NTDF F LYK+L+ +N+FFSP S+S+A + L+LGA+
Sbjct: 35 RDQVGKGRRAAQELAKRNTDFGFRLYKKLSCNNSNKNIFFSPWSISVAFSMLTLGAQDST 94
Query: 366 XXXXXXXXKFNVTETPEAEIHQGFQHLLRTLNRPSNLLQLRLGNAMFIDEHLKLLDKFVQ 545
FN PE ++H+GF +L+ LN+ ++ L LGNA+FID+ LK KF+
Sbjct: 95 LAEIKQG--FNFRNMPEKDLHEGFHYLINRLNQRNHGHDLGLGNALFIDKKLKPQKKFLT 152
Query: 546 DAHELYHSEAFPTNFQDLEAARGLINDYVKNKTEGKIVELIKKLSPQTVAVLVNYIYFKA 725
D LY ++ P NF++LE A+ INDYV KT+GKI L+KK+ P T+ +L+NY++F+A
Sbjct: 153 DVKNLYKADTIPINFRNLENAQRQINDYVNQKTQGKISNLVKKIDPSTLILLINYVFFQA 212
Query: 726 KWKTPFDPEHTIESTFQVSKTRQ*RCP 806
+WK FDP+ T E F + R + P
Sbjct: 213 RWKHEFDPQATKEEDFILEGNRTVKVP 239
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,069,078
Number of extensions: 542021
Number of successful extensions: 2329
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 2293
Number of HSP's successfully gapped: 39
Length of query: 271
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 174
Effective length of database: 8,928,923
Effective search space: 1553632602
Effective search space used: 1553632602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000859
(815 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1011 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1011 bits (510), Expect = 0.0
Identities = 623/658 (94%), Gaps = 2/658 (0%)
Strand = Plus / Plus
Query: 67 cagacatgagggcagagggaatgtccctcttcctggctctgggcctcctggtggctgggc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122933474 cagacatgagggcagagggaatgtccctcttcctggctctgggcctcctggtggctgggc 122933533
Query: 127 tctgctccagggtccactgcctcccagcagatgaccttgactcaaagattgtgaccctga 186
|||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||
Sbjct: 122933534 tctgctccagggtccactgcgtcccagcggatgaccttgcctcaaagattgtgaccctga 122933593
Query: 187 aggaccagatcacgaagctgccagcgcacaaaaacgccgttgtctccagcaacaccgact 246
|||||||||||| ||||||||||| |||||| | |||||| |||||||||||||||||||
Sbjct: 122933594 aggaccagatcaagaagctgccagtgcacaacaccgccgtggtctccagcaacaccgact 122933653
Query: 247 tcgccttcagcctctacaagcagctggctctggccgcacg-cagagaaaatgtcttcttc 305
|||||||||||||||||||||||||| ||||| | || || | | ||| || |||||
Sbjct: 122933654 tcgccttcagcctctacaagcagctgtctctgacgaaccgtcata-agaatatcatcttc 122933712
Query: 306 tccccgctgagcgtctccatggccttggccttcctgtccttgggagcccgaggcaccacc 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 122933713 tccccgctgagcgtctccatggccttggccttcctgtccttgggagcccgaggccccacc 122933772
Query: 366 ctgacagagctcctggaaggcctcaagttcaatgtcacagagacccctgaggcagaaatc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122933773 ctgacagagctcctggaaggcctcaagttcaatgtcacagagacccctgaggcagaaatc 122933832
Query: 426 caccagggtttccagcacctcctgaggacgctcaacaggccgagcaacctgctgcagctg 485
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122933833 caccagggcttccagcacctcctgaggacgctcaacaggccgagcaacctgctgcagctg 122933892
Query: 486 aggttgggcaacgccatgttcattgatgagcatctgaagctgctggacaagttcgtccaa 545
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 122933893 aggttgggcaacgccatgttcattgatgagcagctggagctgctggacaagttcgtccaa 122933952
Query: 546 gatgcccatgagctgtaccactccgaggccttccccactaacttccaggatttagaagct 605
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122933953 gatgcccgtgagctgtaccactccgaggccttccccactaacttccaggatttagaagct 122934012
Query: 606 gccagaggactcattaatgactatgtgaagaacaaaactgaggggaaaatcgtggagttg 665
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 122934013 gccaggagactcattaatgactatgtgaagaacaaaaccgaggggaaaatcgtggagttg 122934072
Query: 666 atcaagaagctttcccctcagaccgtggccgtcctggtgaattacatttactttaaag 723
||||||| |||| |||| ||| | ||||||||||||||||||||||||||||||||
Sbjct: 122934073 atcaagaggcttatccctgtgactgaggccgtcctggtgaattacatttactttaaag 122934130
Score = 882 bits (445), Expect = 0.0
Identities = 604/657 (91%)
Strand = Plus / Minus
Query: 67 cagacatgagggcagagggaatgtccctcttcctggctctgggcctcctggtggctgggc 126
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123101427 cagacatgagggcggagggaatgtccctcttcctggctctgggcctcctggtggctgggc 123101368
Query: 127 tctgctccagggtccactgcctcccagcagatgaccttgactcaaagattgtgaccctga 186
|||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||
Sbjct: 123101367 tctgctccagggtccactgcgtcccagcggatgaccttgcctcaaagattgtgaccctga 123101308
Query: 187 aggaccagatcacgaagctgccagcgcacaaaaacgccgttgtctccagcaacaccgact 246
||| ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 123101307 agggccagatcacgaagctgccagcgcacaacaccgccgtcgtctccagcaacaccgact 123101248
Query: 247 tcgccttcagcctctacaagcagctggctctggccgcacgcagagaaaatgtcttcttct 306
||||||||||||||||||||||||||| | | | ||| | || ||| ||||||
Sbjct: 123101247 tcgccttcagcctctacaagcagctggtttctttagaccccagtaagaacgtcatcttct 123101188
Query: 307 ccccgctgagcgtctccatggccttggccttcctgtccttgggagcccgaggcaccaccc 366
||||||||||||||||||| ||||||||||||||||| |||| |||| |||| ||||||
Sbjct: 123101187 ccccgctgagcgtctccatagccttggccttcctgtctctgggggcccaaggctccaccc 123101128
Query: 367 tgacagagctcctggaaggcctcaagttcaatgtcacagagacccctgaggcagaaatcc 426
||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||
Sbjct: 123101127 tgacagagctcctggaaggcctcaagttcaacctcacaaagacccccgaggcagaaatcc 123101068
Query: 427 accagggtttccagcacctcctgaggacgctcaacaggccgagcaacctgctgcagctga 486
||||||| ||||||||||||||| | | |||| | || |||||||||||||||||||
Sbjct: 123101067 accagggcttccagcacctcctgcaggccctcagccaacccagcaacctgctgcagctga 123101008
Query: 487 ggttgggcaacgccatgttcattgatgagcatctgaagctgctggacaagttcgtccaag 546
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 123101007 acgtgggcaacgccatgttcgtggatgagcatctgaagctgctggacaagttcgtccaag 123100948
Query: 547 atgcccatgagctgtaccactccgaggccttccccactaacttccaggatttagaagctg 606
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123100947 atgcccgtgagctgtaccactccgaggccttccccactaacttccaggatttagaagctg 123100888
Query: 607 ccagaggactcattaatgactatgtgaagaacaaaactgaggggaaaatcgtggagttga 666
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123100887 ccaggagactcattaatgactatgtgaagaacaaaactgaggggaaaatcgtggagttga 123100828
Query: 667 tcaagaagctttcccctcagaccgtggccgtcctggtgaattacatttactttaaag 723
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 123100827 tcaagaagcttttccctcggaccgtggccgtcctggtgaattacatttactttaaag 123100771
Score = 844 bits (426), Expect = 0.0
Identities = 602/658 (91%), Gaps = 2/658 (0%)
Strand = Plus / Minus
Query: 67 cagacatgagggcagagggaatgtccctcttcctggctctgggcctcctggtggctgggc 126
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 123117426 cagacacgagggtagagggaatgtccctcttcctggctctgggcctcctggtggctggac 123117367
Query: 127 tctgctccagggtccactgcctcccagcagatgaccttgactcaaagattgtgaccctga 186
|||||||||||||||||||| ||||||| ||||||| || ||||||||||||||||||||
Sbjct: 123117366 tctgctccagggtccactgcgtcccagcggatgaccctgcctcaaagattgtgaccctga 123117307
Query: 187 aggaccagatcacgaagctgccagcgcacaaaaacgccgttgtctccagcaacaccgact 246
|||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 123117306 aggaccagatcaagaagctgccagcgcacaacaccgccgtcgtctccagcaacaccgact 123117247
Query: 247 tcgccttcagcctctacaagcagctggctctggccg-cacgcagagaaaatgtcttcttc 305
|||||||||||||||||||||||||||||||| | | |||| || |||||| |||||
Sbjct: 123117246 tcgccttcagcctctacaagcagctggctctgacgaacccgcat-gagaatgtcatcttc 123117188
Query: 306 tccccgctgagcgtctccatggccttggccttcctgtccttgggagcccgaggcaccacc 365
|||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct: 123117187 tccccgctgagcgtctccatggccttggccttcctgtctctgggggcccgaggccccacc 123117128
Query: 366 ctgacagagctcctggaaggcctcaagttcaatgtcacagagacccctgaggcagaaatc 425
|||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct: 123117127 ctgacagagctcctggaaggcctcaagttcaacctcacaaagacccccgaggcagaaatc 123117068
Query: 426 caccagggtttccagcacctcctgaggacgctcaacaggccgagcaacctgctgcagctg 485
|||||||| ||||||||||||||||| |||||| ||||| |||| |||||||||||||||
Sbjct: 123117067 caccagggcttccagcacctcctgagcacgctcgacaggtcgagtaacctgctgcagctg 123117008
Query: 486 aggttgggcaacgccatgttcattgatgagcatctgaagctgctggacaagttcgtccaa 545
||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 123117007 aggttgggcaatgccatgttcattgatgagcagctggagctgctggacaagttcgtccaa 123116948
Query: 546 gatgcccatgagctgtaccactccgaggccttccccactaacttccaggatttagaagct 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123116947 gatgcccatgagctgtaccactccgaggccttccccactaacttccaggatttagaagct 123116888
Query: 606 gccagaggactcattaatgactatgtgaagaacaaaactgaggggaaaatcgtggagttg 665
||||| ||||||||||||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 123116887 gccaggagactcattaatgactatgtgaagaataagaccgagggaaaaattgtggacttg 123116828
Query: 666 atcaagaagctttcccctcagaccgtggccgtcctggtgaattacatttactttaaag 723
||||||||||| ||| | ||| || ||||||||||| ||||| ||||||||||
Sbjct: 123116827 ttcaagaagcttgacccactcaccaaggtggtcctggtgaactacatctactttaaag 123116770
Score = 666 bits (336), Expect = 0.0
Identities = 468/512 (91%)
Strand = Plus / Plus
Query: 67 cagacatgagggcagagggaatgtccctcttcctggctctgggcctcctggtggctgggc 126
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 123036214 cagacatgagggcggagggaatgtccctcttcctggctctggggctcctggtggctgggc 123036273
Query: 127 tctgctccagggtccactgcctcccagcagatgaccttgactcaaagattgtgaccctga 186
|||||||||||||||||||| ||||||| |||||||||| |||||||| |||||||||||
Sbjct: 123036274 tctgctccagggtccactgcgtcccagcggatgaccttgcctcaaagactgtgaccctga 123036333
Query: 187 aggaccagatcacgaagctgccagcgcacaaaaacgccgttgtctccagcaacaccgact 246
||| |||||||| |||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 123036334 agggccagatcaagaagctgccagcgcacaacaccgccgtcgtctccagcaacaccgact 123036393
Query: 247 tcgccttcagcctctacaagcagctggctctggccgcacgcagagaaaatgtcttcttct 306
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 123036394 tcgccttcagcctctacaagcagctggctctggccgaacgcagagaaaatgtcatcttct 123036453
Query: 307 ccccgctgagcgtctccatggccttggccttcctgtccttgggagcccgaggcaccaccc 366
||||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||
Sbjct: 123036454 ccccgctgagcgtctccatagccttggccttcctgtctctgggggcccgaggccccaccc 123036513
Query: 367 tgacagagctcctggaaggcctcaagttcaatgtcacagagacccctgaggcagaaatcc 426
||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||
Sbjct: 123036514 tgatagagctcctggaaggcctcaagttcaacctcacaaagacccccgaggcagaaatcc 123036573
Query: 427 accagggtttccagcacctcctgaggacgctcaacaggccgagcaacctgctgcagctga 486
||||||| ||||||||||||||| | | |||| | || |||||||||||||||||||
Sbjct: 123036574 accagggcttccagcacctcctgcaggccctcagccaacccagcaacctgctgcagctga 123036633
Query: 487 ggttgggcaacgccatgttcattgatgagcatctgaagctgctggacaagttcgtccaag 546
||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct: 123036634 acgtgggcaacgccatgttcgtggatgagcggctgaagctgctggacaagttcgtccaag 123036693
Query: 547 atgcccatgagctgtaccactccgaggccttc 578
|||||| |||||||||| |||||||| ||||
Sbjct: 123036694 atgcccgtgagctgtacttctccgaggtcttc 123036725
Score = 579 bits (292), Expect = e-163
Identities = 457/512 (89%)
Strand = Plus / Plus
Query: 67 cagacatgagggcagagggaatgtccctcttcctggctctgggcctcctggtggctgggc 126
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 122963667 cagacatgagggcggagggcatgtccctcttcctggctctgggcctcctggtggctgggc 122963726
Query: 127 tctgctccagggtccactgcctcccagcagatgaccttgactcaaagattgtgaccctga 186
|||||||||||||||||||| ||||||| |||||||||| |||||||| |||||||||||
Sbjct: 122963727 tctgctccagggtccactgcgtcccagcggatgaccttgcctcaaagactgtgaccctga 122963786
Query: 187 aggaccagatcacgaagctgccagcgcacaaaaacgccgttgtctccagcaacaccgact 246
||| ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 122963787 agggccagatcacgaagctgccagcgcacaacaccgccgtcgtctccagcaacaccgact 122963846
Query: 247 tcgccttcagcctctacaagcagctggctctggccgcacgcagagaaaatgtcttcttct 306
||||||||||||||||||||||||||| | | | || | || ||| ||||||
Sbjct: 122963847 tcgccttcagcctctacaagcagctggtttctttagaccccaataagaacgtcatcttct 122963906
Query: 307 ccccgctgagcgtctccatggccttggccttcctgtccttgggagcccgaggcaccaccc 366
||||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||
Sbjct: 122963907 ccccgctgagcgtctccatagccttggccttcctgtctctgggggcccgaggctccaccc 122963966
Query: 367 tgacagagctcctggaaggcctcaagttcaatgtcacagagacccctgaggcagaaatcc 426
||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||
Sbjct: 122963967 tgacagagctcctggaaggcctcaagttcaacctcacaaagacccccgaggcagaaatcc 122964026
Query: 427 accagggtttccagcacctcctgaggacgctcaacaggccgagcaacctgctgcagctga 486
||||||| ||||||||||||||| || | |||| | || |||||||||||||||||||
Sbjct: 122964027 accagggcttccagcacctcctgcgggccctcagccaacccagcaacctgctgcagctga 122964086
Query: 487 ggttgggcaacgccatgttcattgatgagcatctgaagctgctggacaagttcgtccaag 546
||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct: 122964087 acgtgggcaacgccatgttcgtggatgagcggctgaagctgctggacaagttcgtccaag 122964146
Query: 547 atgcccatgagctgtaccactccgaggccttc 578
|||||| |||||||||| |||||||| ||||
Sbjct: 122964147 atgcccgtgagctgtacttctccgaggtcttc 122964178
Score = 335 bits (169), Expect = 2e-89
Identities = 394/469 (84%)
Strand = Plus / Minus
Query: 71 catgagggcagagggaatgtccctcttcctggctctgggcctcctggtggctgggctctg 130
||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 123023071 catgaaggcagagggcatgtcccccttcctggctctggggctcctggtggctgggctctg 123023012
Query: 131 ctccagggtccactgcctcccagcagatgaccttgactcaaagattgtgaccctgaagga 190
|||||||||||||||| |||| | || | | |||| || ||| || ||||| ||| ||
Sbjct: 123023011 ctccagggtccactgcgtccccgaaggcaaacctgacccagagaatgggaccccgaacga 123022952
Query: 191 ccagatcacgaagctgccagcgcacaaaaacgccgttgtctccagcaacaccgacttcgc 250
|||| || | | || | | || ||||| ||||| |||||||||||||||||||
Sbjct: 123022951 ccagcacagcaggactcccgtggacccccacgccattgtccccagcaacaccgacttcgc 123022892
Query: 251 cttcagcctctacaagcagctggctctggccgcacgcagagaaaatgtcttcttctcccc 310
||||||||||||||||||||||| | | | ||| | || ||| ||||||||||
Sbjct: 123022891 cttcagcctctacaagcagctggtttctttagaccccagtaagaacgtcatcttctcccc 123022832
Query: 311 gctgagcgtctccatggccttggccttcctgtccttgggagcccgaggcaccaccctgac 370
||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 123022831 gctgagcgtctccatagccttggccttcctgtctctgggggcccgaggccccaccctgac 123022772
Query: 371 agagctcctggaaggcctcaagttcaatgtcacagagacccctgaggcagaaatccacca 430
||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||
Sbjct: 123022771 agagctcctggaaggcctcaagttcaacctcacaaagacccccgaggcagaaatccacca 123022712
Query: 431 gggtttccagcacctcctgaggacgctcaacaggccgagcaacctgctgcagctgaggtt 490
||| ||||||||||||||| | | |||| | || ||||||||||||||||||| |
Sbjct: 123022711 gggcttccagcacctcctgcaggccctcagccaacccagcaacctgctgcagctgaacgt 123022652
Query: 491 gggcaacgccatgttcattgatgagcatctgaagctgctggacaagttc 539
|||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct: 123022651 gggcaacgccatgttcgtggatgagcatctgaagctgctggacgagttc 123022603
Score = 327 bits (165), Expect = 5e-87
Identities = 393/469 (83%)
Strand = Plus / Plus
Query: 71 catgagggcagagggaatgtccctcttcctggctctgggcctcctggtggctgggctctg 130
||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 122999382 catgaaggcagagggcatgtcccccttcctggctctggggctcctggtggctgggctctg 122999441
Query: 131 ctccagggtccactgcctcccagcagatgaccttgactcaaagattgtgaccctgaagga 190
|||||||||||||||| |||| | | | | |||| || ||| || ||||| ||||||
Sbjct: 122999442 ctccagggtccactgcgtccccgaaagcaaacctgacccagagaatgggaccccgaagga 122999501
Query: 191 ccagatcacgaagctgccagcgcacaaaaacgccgttgtctccagcaacaccgacttcgc 250
|||| || | | || | | || ||||| |||| |||||||||||||||||||
Sbjct: 122999502 ccagcacagcaggactcccgtggacccccacgccattgttcccagcaacaccgacttcgc 122999561
Query: 251 cttcagcctctacaagcagctggctctggccgcacgcagagaaaatgtcttcttctcccc 310
||||||||||||||||||||||| | | | ||| | || ||| ||||||||||
Sbjct: 122999562 cttcagcctctacaagcagctggtttctttagaccccagtaagaacgtcatcttctcccc 122999621
Query: 311 gctgagcgtctccatggccttggccttcctgtccttgggagcccgaggcaccaccctgac 370
||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 122999622 gctgagcgtctccatggccttggccttcctgtctctgggggcccgaggccccaccctgac 122999681
Query: 371 agagctcctggaaggcctcaagttcaatgtcacagagacccctgaggcagaaatccacca 430
||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||
Sbjct: 122999682 agagctcctggaaggcctcaagttcaacctcacaaagacccccgaggcagaaatccacca 122999741
Query: 431 gggtttccagcacctcctgaggacgctcaacaggccgagcaacctgctgcagctgaggtt 490
||| ||||||||||||||| | | |||| | || ||||||||||||||||||| |
Sbjct: 122999742 gggcttccagcacctcctgcaggccctcagccaacccagcaacctgctgcagctgaacgt 122999801
Query: 491 gggcaacgccatgttcattgatgagcatctgaagctgctggacaagttc 539
|||||||||||||||| | ||||| |||||||||||||||||| |||||
Sbjct: 122999802 gggcaacgccatgttcgtggatgaacatctgaagctgctggacgagttc 122999850
Score = 157 bits (79), Expect = 1e-35
Identities = 92/95 (96%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 722 agccaagtggaagacgccctttgatccagaacatactatagagtccacgttccaagtgag 781
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 123020864 agccaagtggaagacgccctttgatccagaacatactatagagtccacgttccacgtgag 123020805
Query: 782 caag-acaagacagtgaaggtgcccatgatgagcc 815
|||| ||| ||||||||||||||||||||||||||
Sbjct: 123020804 caagaacaggacagtgaaggtgcccatgatgagcc 123020770
Score = 109 bits (55), Expect = 2e-21
Identities = 58/59 (98%)
Strand = Plus / Minus
Query: 11 agcattgcgggcaggtggcggctctgggtccactcagcgcatcccgctctgcgaggcag 69
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122953936 agcattgcgggcaggcggcggctctgggtccactcagcgcatcccgctctgcgaggcag 122953878
Score = 109 bits (55), Expect = 2e-21
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 11 agcattgcgggcaggtggcggctctgggtccactcagcgcatcccgctctgcgaggcag 69
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 122961778 agcattgcgggcaggtggtggctctgggtccactcagcgcatcccgctctgcgaggcag 122961836
Score = 109 bits (55), Expect = 2e-21
Identities = 58/59 (98%)
Strand = Plus / Minus
Query: 11 agcattgcgggcaggtggcggctctgggtccactcagcgcatcccgctctgcgaggcag 69
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123103334 agcattgcgggcaggcggcggctctgggtccactcagcgcatcccgctctgcgaggcag 123103276
Score = 101 bits (51), Expect = 6e-19
Identities = 57/59 (96%)
Strand = Plus / Minus
Query: 11 agcattgcgggcaggtggcggctctgggtccactcagcgcatcccgctctgcgaggcag 69
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 123024977 agcattgcgggcaggcggcggctctgggtccactcagcacatcccgctctgcgaggcag 123024919
Score = 101 bits (51), Expect = 6e-19
Identities = 57/59 (96%)
Strand = Plus / Minus
Query: 11 agcattgcgggcaggtggcggctctgggtccactcagcgcatcccgctctgcgaggcag 69
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 123119625 agcattgcgggcaggcggcggctctgggtccactcagcgcatcctgctctgcgaggcag 123119567
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,747,264
Number of extensions: 198
Number of successful extensions: 198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 25
Length of query: 815
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 794
Effective length of database: 2,808,413,156
Effective search space: 2229880045864
Effective search space used: 2229880045864
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)